AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122190 MtrunA17_Chr1g0181911 87.805 246 24 3 36 280 1 241 3.27e-118 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122190 AT2G37300.3 66.667 48 16 0 46 93 35 82 7.47e-14 68.9
Msa0122190 AT2G37300.6 66.667 48 16 0 46 93 35 82 7.47e-14 68.9
Msa0122190 AT2G37300.5 66.667 48 16 0 46 93 35 82 7.47e-14 68.9
Msa0122190 AT2G37300.4 66.667 48 16 0 46 93 13 60 7.56e-14 68.6
Msa0122190 AT2G37300.1 66.667 48 16 0 46 93 13 60 7.56e-14 68.6
Msa0122190 AT2G37300.2 66.667 48 16 0 46 93 92 139 2.85e-13 68.6

Find 49 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCTTCTGAATAATATT+TGG 0.158875 1_3:+48525927 None:intergenic
GACAGTAATGAGTGCATATT+TGG 0.183388 1_3:-48525369 Msa0122190:three_prime_UTR
ATTTAGCCTTAGTCCATATT+TGG 0.185131 1_3:+48525263 None:intergenic
TTCAAAGTTCCTTAGGAATA+AGG 0.235437 1_3:-48525432 Msa0122190:CDS
ATTTACGGTCGGTCCAAATA+TGG 0.256611 1_3:-48525276 Msa0122190:three_prime_UTR
CTAACATCTTCAAACTCTTT+TGG 0.261115 1_3:-48526674 Msa0122190:five_prime_UTR
TTAACACTTCTTCTATTATA+AGG 0.268996 1_3:-48525060 Msa0122190:three_prime_UTR
TAAGGAACAAGCAGAATTAA+TGG 0.292596 1_3:-48526325 Msa0122190:CDS
AGAATCCTTTGATAATTCTT+TGG 0.307251 1_3:-48525575 Msa0122190:CDS
AGCAGAATTAATGGCCAATA+AGG 0.318363 1_3:-48526316 Msa0122190:intron
CAGCAATAACCTTGAGTAAT+GGG 0.327225 1_3:-48525168 Msa0122190:three_prime_UTR
GTCTCTGAAACAATTTGATT+TGG 0.356428 1_3:+48525886 None:intergenic
GAAAAGCTTCAAAGTTCCTT+AGG 0.408448 1_3:-48525439 Msa0122190:CDS
ATCCTCCAAATCAAAACAAT+TGG 0.439241 1_3:-48526022 Msa0122190:CDS
CCAAACAGGACCACTATTGC+AGG 0.439932 1_3:-48526552 Msa0122190:intron
CTGATTCTGAAATATAAAGA+TGG 0.456768 1_3:-48526644 Msa0122190:exon
TGAAGCTCTAGATGCATTGA+GGG 0.457114 1_3:-48525470 Msa0122190:CDS
CCTGCAATAGTGGTCCTGTT+TGG 0.464615 1_3:+48526552 None:intergenic
ACAGGCTTCAAAAGTAGCTA+AGG 0.474167 1_3:-48526343 Msa0122190:CDS
CACAGAAAACATGTGACGTT+GGG 0.483603 1_3:-48525096 Msa0122190:three_prime_UTR
AAATTCTCAAAGTCAGAGCT+TGG 0.486036 1_3:+48525790 None:intergenic
ATTTGAAGAATGATGAAAGC+AGG 0.488578 1_3:-48525771 Msa0122190:intron
GAGGTTACTAGCAGAGAGAC+AGG 0.488693 1_3:-48526361 Msa0122190:CDS
TCGGAGTGAGAAGTTACATT+AGG 0.490921 1_3:+48525392 None:intergenic
AACACTGTGGCATGTCTAAG+AGG 0.493592 1_3:-48526384 Msa0122190:CDS
GGTAAAGTTCTTGTGAATTG+TGG 0.495003 1_3:-48525131 Msa0122190:three_prime_UTR
CAGAATTGTGAAAATTCTTG+TGG 0.501754 1_3:-48525982 Msa0122190:CDS
CATAACTGCTAACACCAAAC+AGG 0.505299 1_3:-48526566 Msa0122190:CDS
AATCGTTCGCCTTATTCCTA+AGG 0.511083 1_3:+48525423 None:intergenic
ACAGCAATAACCTTGAGTAA+TGG 0.513860 1_3:-48525169 Msa0122190:three_prime_UTR
TTGAAGCTCTAGATGCATTG+AGG 0.524675 1_3:-48525471 Msa0122190:CDS
GGGAGAGATACCTGCAATAG+TGG 0.525589 1_3:+48526542 None:intergenic
TCTACCAATCCCATTACTCA+AGG 0.530854 1_3:+48525159 None:intergenic
AAGAAAATGGAAGTAGATGA+AGG 0.533758 1_3:-48526417 Msa0122190:CDS
TAATGGGATTGGTAGAAGAA+TGG 0.537470 1_3:-48525152 Msa0122190:three_prime_UTR
GTCGGTCCAAATATGGACTA+AGG 0.537825 1_3:-48525269 Msa0122190:three_prime_UTR
ATATGCACTCATTACTGTCT+CGG 0.540267 1_3:+48525373 None:intergenic
TGATTCTGAAATATAAAGAT+GGG 0.543392 1_3:-48526643 Msa0122190:exon
AGAATTGTGAAAATTCTTGT+GGG 0.556054 1_3:-48525981 Msa0122190:CDS
GCTGTCACATTCACAGTCAC+AGG 0.564805 1_3:+48525544 None:intergenic
AGATGCATTGAGGGTTGCCA+AGG 0.577687 1_3:-48525461 Msa0122190:CDS
ATAACCTTGAGTAATGGGAT+TGG 0.584601 1_3:-48525163 Msa0122190:three_prime_UTR
CCACAGAAAACATGTGACGT+TGG 0.585448 1_3:-48525097 Msa0122190:three_prime_UTR
TTCAGCATGTAGATAGAGAG+AGG 0.597216 1_3:-48525197 Msa0122190:three_prime_UTR
TAATGCCAAAGAATTATCAA+AGG 0.628211 1_3:+48525570 None:intergenic
ATAAGGCGAACGATTCGCGT+TGG 0.628535 1_3:-48525415 Msa0122190:CDS
ACACTGTGGCATGTCTAAGA+GGG 0.632958 1_3:-48526383 Msa0122190:CDS
CTGTGGCATGTCTAAGAGGG+AGG 0.653297 1_3:-48526380 Msa0122190:CDS
AGGTTTGAATTTGAACACTG+TGG 0.756754 1_3:-48526397 Msa0122190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTATTACCTTAT+TGG + chr1_3:48525489-48525508 None:intergenic 10.0%
!! AAAAAATATTATTACCTTAT+TGG + chr1_3:48525489-48525508 None:intergenic 10.0%
!!! ATGTTAGTATTTTTGAAAAA+GGG + chr1_3:48525101-48525120 None:intergenic 15.0%
!!! ATGTTAGTATTTTTGAAAAA+GGG + chr1_3:48525101-48525120 None:intergenic 15.0%
!!! GATGTTAGTATTTTTGAAAA+AGG + chr1_3:48525102-48525121 None:intergenic 20.0%
!!! TGATTCTGAAATATAAAGAT+GGG - chr1_3:48525145-48525164 Msa0122190:three_prime_UTR 20.0%
!!! AGAGAAAGCTTAAATTTTTA+AGG - chr1_3:48525720-48525739 Msa0122190:intron 20.0%
!! ATTTGCTTCTGAATAATATT+TGG + chr1_3:48525864-48525883 None:intergenic 20.0%
!!! ACATGATTTTGCTTAATTTA+CGG - chr1_3:48526497-48526516 Msa0122190:intron 20.0%
!! TTAACACTTCTTCTATTATA+AGG - chr1_3:48526728-48526747 Msa0122190:five_prime_UTR 20.0%
!!! GATGTTAGTATTTTTGAAAA+AGG + chr1_3:48525102-48525121 None:intergenic 20.0%
!!! TGATTCTGAAATATAAAGAT+GGG - chr1_3:48525145-48525164 Msa0122190:three_prime_UTR 20.0%
!!! AGAGAAAGCTTAAATTTTTA+AGG - chr1_3:48525720-48525739 Msa0122190:intron 20.0%
!! ATTTGCTTCTGAATAATATT+TGG + chr1_3:48525864-48525883 None:intergenic 20.0%
!!! ACATGATTTTGCTTAATTTA+CGG - chr1_3:48526497-48526516 Msa0122190:intron 20.0%
!! TTAACACTTCTTCTATTATA+AGG - chr1_3:48526728-48526747 Msa0122190:five_prime_UTR 20.0%
!!! CTGATTCTGAAATATAAAGA+TGG - chr1_3:48525144-48525163 Msa0122190:three_prime_UTR 25.0%
! GAATGACATTGTTGAATTAT+TGG - chr1_3:48525338-48525357 Msa0122190:three_prime_UTR 25.0%
! CATTGTTACTATCAGTTAAA+AGG + chr1_3:48525513-48525532 None:intergenic 25.0%
!!! GAAGTTATTTTTTTGACAGT+TGG - chr1_3:48525646-48525665 Msa0122190:intron 25.0%
! AGAATTGTGAAAATTCTTGT+GGG - chr1_3:48525807-48525826 Msa0122190:CDS 25.0%
!!! TGTTGTCAATTTTGGAATTT+TGG - chr1_3:48526121-48526140 Msa0122190:CDS 25.0%
!! AGAATCCTTTGATAATTCTT+TGG - chr1_3:48526213-48526232 Msa0122190:intron 25.0%
! TAATGCCAAAGAATTATCAA+AGG + chr1_3:48526221-48526240 None:intergenic 25.0%
!!! CTGATTCTGAAATATAAAGA+TGG - chr1_3:48525144-48525163 Msa0122190:three_prime_UTR 25.0%
! GAATGACATTGTTGAATTAT+TGG - chr1_3:48525338-48525357 Msa0122190:three_prime_UTR 25.0%
! CATTGTTACTATCAGTTAAA+AGG + chr1_3:48525513-48525532 None:intergenic 25.0%
!!! GAAGTTATTTTTTTGACAGT+TGG - chr1_3:48525646-48525665 Msa0122190:intron 25.0%
! AGAATTGTGAAAATTCTTGT+GGG - chr1_3:48525807-48525826 Msa0122190:CDS 25.0%
!!! TGTTGTCAATTTTGGAATTT+TGG - chr1_3:48526121-48526140 Msa0122190:CDS 25.0%
!! AGAATCCTTTGATAATTCTT+TGG - chr1_3:48526213-48526232 Msa0122190:intron 25.0%
! TAATGCCAAAGAATTATCAA+AGG + chr1_3:48526221-48526240 None:intergenic 25.0%
! CTAACATCTTCAAACTCTTT+TGG - chr1_3:48525114-48525133 Msa0122190:three_prime_UTR 30.0%
AAGAAAATGGAAGTAGATGA+AGG - chr1_3:48525371-48525390 Msa0122190:three_prime_UTR 30.0%
TAAGGAACAAGCAGAATTAA+TGG - chr1_3:48525463-48525482 Msa0122190:CDS 30.0%
ATCCTCCAAATCAAAACAAT+TGG - chr1_3:48525766-48525785 Msa0122190:intron 30.0%
!!! ATGCACCAATTGTTTTGATT+TGG + chr1_3:48525774-48525793 None:intergenic 30.0%
CAGAATTGTGAAAATTCTTG+TGG - chr1_3:48525806-48525825 Msa0122190:CDS 30.0%
!! GTCTCTGAAACAATTTGATT+TGG + chr1_3:48525905-48525924 None:intergenic 30.0%
! AGAATCACAATCTTTTGTTG+TGG + chr1_3:48525945-48525964 None:intergenic 30.0%
ATTTGAAGAATGATGAAAGC+AGG - chr1_3:48526017-48526036 Msa0122190:CDS 30.0%
! TTTGAGCATGTTGTCAATTT+TGG - chr1_3:48526113-48526132 Msa0122190:CDS 30.0%
!!! ATTTTGGTGTCATGTTTTTC+AGG - chr1_3:48526137-48526156 Msa0122190:intron 30.0%
TTCAAAGTTCCTTAGGAATA+AGG - chr1_3:48526356-48526375 Msa0122190:CDS 30.0%
!!! TGCACTGTAATTTTTTACAC+TGG + chr1_3:48526475-48526494 None:intergenic 30.0%
! GATTTTGCTTAATTTACGGT+CGG - chr1_3:48526501-48526520 Msa0122190:intron 30.0%
!! ATTTAGCCTTAGTCCATATT+TGG + chr1_3:48526528-48526547 None:intergenic 30.0%
! CTAACATCTTCAAACTCTTT+TGG - chr1_3:48525114-48525133 Msa0122190:three_prime_UTR 30.0%
AAGAAAATGGAAGTAGATGA+AGG - chr1_3:48525371-48525390 Msa0122190:three_prime_UTR 30.0%
TAAGGAACAAGCAGAATTAA+TGG - chr1_3:48525463-48525482 Msa0122190:CDS 30.0%
ATCCTCCAAATCAAAACAAT+TGG - chr1_3:48525766-48525785 Msa0122190:intron 30.0%
!!! ATGCACCAATTGTTTTGATT+TGG + chr1_3:48525774-48525793 None:intergenic 30.0%
CAGAATTGTGAAAATTCTTG+TGG - chr1_3:48525806-48525825 Msa0122190:CDS 30.0%
!! GTCTCTGAAACAATTTGATT+TGG + chr1_3:48525905-48525924 None:intergenic 30.0%
! AGAATCACAATCTTTTGTTG+TGG + chr1_3:48525945-48525964 None:intergenic 30.0%
ATTTGAAGAATGATGAAAGC+AGG - chr1_3:48526017-48526036 Msa0122190:CDS 30.0%
! TTTGAGCATGTTGTCAATTT+TGG - chr1_3:48526113-48526132 Msa0122190:CDS 30.0%
!!! ATTTTGGTGTCATGTTTTTC+AGG - chr1_3:48526137-48526156 Msa0122190:intron 30.0%
TTCAAAGTTCCTTAGGAATA+AGG - chr1_3:48526356-48526375 Msa0122190:CDS 30.0%
!!! TGCACTGTAATTTTTTACAC+TGG + chr1_3:48526475-48526494 None:intergenic 30.0%
! GATTTTGCTTAATTTACGGT+CGG - chr1_3:48526501-48526520 Msa0122190:intron 30.0%
!! ATTTAGCCTTAGTCCATATT+TGG + chr1_3:48526528-48526547 None:intergenic 30.0%
!!! TGGTTTTAGCAGCAAGAAAA+TGG - chr1_3:48525358-48525377 Msa0122190:three_prime_UTR 35.0%
AGGTTTGAATTTGAACACTG+TGG - chr1_3:48525391-48525410 Msa0122190:exon 35.0%
AGCAGAATTAATGGCCAATA+AGG - chr1_3:48525472-48525491 Msa0122190:CDS 35.0%
! TTTTTGACAGTTGGTTGAGT+TGG - chr1_3:48525655-48525674 Msa0122190:intron 35.0%
!! GTTGGTTGAGTTGGAAAAAT+TGG - chr1_3:48525664-48525683 Msa0122190:intron 35.0%
!!! CACCAATTGTTTTGATTTGG+AGG + chr1_3:48525771-48525790 None:intergenic 35.0%
AAATTCTCAAAGTCAGAGCT+TGG + chr1_3:48526001-48526020 None:intergenic 35.0%
GAAAAGCTTCAAAGTTCCTT+AGG - chr1_3:48526349-48526368 Msa0122190:CDS 35.0%
ATATGCACTCATTACTGTCT+CGG + chr1_3:48526418-48526437 None:intergenic 35.0%
GACAGTAATGAGTGCATATT+TGG - chr1_3:48526419-48526438 Msa0122190:CDS 35.0%
ACAGCAATAACCTTGAGTAA+TGG - chr1_3:48526619-48526638 Msa0122190:CDS 35.0%
CAGCAATAACCTTGAGTAAT+GGG - chr1_3:48526620-48526639 Msa0122190:CDS 35.0%
! ATAACCTTGAGTAATGGGAT+TGG - chr1_3:48526625-48526644 Msa0122190:CDS 35.0%
! TAATGGGATTGGTAGAAGAA+TGG - chr1_3:48526636-48526655 Msa0122190:exon 35.0%
GGTAAAGTTCTTGTGAATTG+TGG - chr1_3:48526657-48526676 Msa0122190:five_prime_UTR 35.0%
!!! TGGTTTTAGCAGCAAGAAAA+TGG - chr1_3:48525358-48525377 Msa0122190:three_prime_UTR 35.0%
AGGTTTGAATTTGAACACTG+TGG - chr1_3:48525391-48525410 Msa0122190:exon 35.0%
AGCAGAATTAATGGCCAATA+AGG - chr1_3:48525472-48525491 Msa0122190:CDS 35.0%
! TTTTTGACAGTTGGTTGAGT+TGG - chr1_3:48525655-48525674 Msa0122190:intron 35.0%
!! GTTGGTTGAGTTGGAAAAAT+TGG - chr1_3:48525664-48525683 Msa0122190:intron 35.0%
!!! CACCAATTGTTTTGATTTGG+AGG + chr1_3:48525771-48525790 None:intergenic 35.0%
AAATTCTCAAAGTCAGAGCT+TGG + chr1_3:48526001-48526020 None:intergenic 35.0%
GAAAAGCTTCAAAGTTCCTT+AGG - chr1_3:48526349-48526368 Msa0122190:CDS 35.0%
ATATGCACTCATTACTGTCT+CGG + chr1_3:48526418-48526437 None:intergenic 35.0%
GACAGTAATGAGTGCATATT+TGG - chr1_3:48526419-48526438 Msa0122190:CDS 35.0%
ACAGCAATAACCTTGAGTAA+TGG - chr1_3:48526619-48526638 Msa0122190:CDS 35.0%
CAGCAATAACCTTGAGTAAT+GGG - chr1_3:48526620-48526639 Msa0122190:CDS 35.0%
! ATAACCTTGAGTAATGGGAT+TGG - chr1_3:48526625-48526644 Msa0122190:CDS 35.0%
! TAATGGGATTGGTAGAAGAA+TGG - chr1_3:48526636-48526655 Msa0122190:exon 35.0%
GGTAAAGTTCTTGTGAATTG+TGG - chr1_3:48526657-48526676 Msa0122190:five_prime_UTR 35.0%
CATAACTGCTAACACCAAAC+AGG - chr1_3:48525222-48525241 Msa0122190:three_prime_UTR 40.0%
ACAGGCTTCAAAAGTAGCTA+AGG - chr1_3:48525445-48525464 Msa0122190:CDS 40.0%
!! TTGAAGCTCTAGATGCATTG+AGG - chr1_3:48526317-48526336 Msa0122190:CDS 40.0%
!! TGAAGCTCTAGATGCATTGA+GGG - chr1_3:48526318-48526337 Msa0122190:CDS 40.0%
!!! GGAACTTTGAAGCTTTTCCT+TGG + chr1_3:48526347-48526366 None:intergenic 40.0%
! AATCGTTCGCCTTATTCCTA+AGG + chr1_3:48526368-48526387 None:intergenic 40.0%
TCGGAGTGAGAAGTTACATT+AGG + chr1_3:48526399-48526418 None:intergenic 40.0%
ATTTACGGTCGGTCCAAATA+TGG - chr1_3:48526512-48526531 Msa0122190:intron 40.0%
TTCAGCATGTAGATAGAGAG+AGG - chr1_3:48526591-48526610 Msa0122190:CDS 40.0%
TCTACCAATCCCATTACTCA+AGG + chr1_3:48526632-48526651 None:intergenic 40.0%
CACAGAAAACATGTGACGTT+GGG - chr1_3:48526692-48526711 Msa0122190:five_prime_UTR 40.0%
CATAACTGCTAACACCAAAC+AGG - chr1_3:48525222-48525241 Msa0122190:three_prime_UTR 40.0%
ACAGGCTTCAAAAGTAGCTA+AGG - chr1_3:48525445-48525464 Msa0122190:CDS 40.0%
!! TTGAAGCTCTAGATGCATTG+AGG - chr1_3:48526317-48526336 Msa0122190:CDS 40.0%
!! TGAAGCTCTAGATGCATTGA+GGG - chr1_3:48526318-48526337 Msa0122190:CDS 40.0%
!!! GGAACTTTGAAGCTTTTCCT+TGG + chr1_3:48526347-48526366 None:intergenic 40.0%
! AATCGTTCGCCTTATTCCTA+AGG + chr1_3:48526368-48526387 None:intergenic 40.0%
TCGGAGTGAGAAGTTACATT+AGG + chr1_3:48526399-48526418 None:intergenic 40.0%
ATTTACGGTCGGTCCAAATA+TGG - chr1_3:48526512-48526531 Msa0122190:intron 40.0%
TTCAGCATGTAGATAGAGAG+AGG - chr1_3:48526591-48526610 Msa0122190:CDS 40.0%
TCTACCAATCCCATTACTCA+AGG + chr1_3:48526632-48526651 None:intergenic 40.0%
CACAGAAAACATGTGACGTT+GGG - chr1_3:48526692-48526711 Msa0122190:five_prime_UTR 40.0%
AACACTGTGGCATGTCTAAG+AGG - chr1_3:48525404-48525423 Msa0122190:exon 45.0%
ACACTGTGGCATGTCTAAGA+GGG - chr1_3:48525405-48525424 Msa0122190:CDS 45.0%
! GTCGGTCCAAATATGGACTA+AGG - chr1_3:48526519-48526538 Msa0122190:intron 45.0%
! CCAACGTCACATGTTTTCTG+TGG + chr1_3:48526694-48526713 None:intergenic 45.0%
CCACAGAAAACATGTGACGT+TGG - chr1_3:48526691-48526710 Msa0122190:five_prime_UTR 45.0%
AACACTGTGGCATGTCTAAG+AGG - chr1_3:48525404-48525423 Msa0122190:exon 45.0%
ACACTGTGGCATGTCTAAGA+GGG - chr1_3:48525405-48525424 Msa0122190:CDS 45.0%
! GTCGGTCCAAATATGGACTA+AGG - chr1_3:48526519-48526538 Msa0122190:intron 45.0%
! CCAACGTCACATGTTTTCTG+TGG + chr1_3:48526694-48526713 None:intergenic 45.0%
CCACAGAAAACATGTGACGT+TGG - chr1_3:48526691-48526710 Msa0122190:five_prime_UTR 45.0%
CCTGCAATAGTGGTCCTGTT+TGG + chr1_3:48525239-48525258 None:intergenic 50.0%
CCAAACAGGACCACTATTGC+AGG - chr1_3:48525236-48525255 Msa0122190:three_prime_UTR 50.0%
GGGAGAGATACCTGCAATAG+TGG + chr1_3:48525249-48525268 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_3:48525269-48525288 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:48525268-48525287 None:intergenic 50.0%
GAGGTTACTAGCAGAGAGAC+AGG - chr1_3:48525427-48525446 Msa0122190:CDS 50.0%
GCTGTCACATTCACAGTCAC+AGG + chr1_3:48526247-48526266 None:intergenic 50.0%
AGATGCATTGAGGGTTGCCA+AGG - chr1_3:48526327-48526346 Msa0122190:CDS 50.0%
ATAAGGCGAACGATTCGCGT+TGG - chr1_3:48526373-48526392 Msa0122190:CDS 50.0%
CCTGCAATAGTGGTCCTGTT+TGG + chr1_3:48525239-48525258 None:intergenic 50.0%
CCAAACAGGACCACTATTGC+AGG - chr1_3:48525236-48525255 Msa0122190:three_prime_UTR 50.0%
GGGAGAGATACCTGCAATAG+TGG + chr1_3:48525249-48525268 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_3:48525269-48525288 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:48525268-48525287 None:intergenic 50.0%
GAGGTTACTAGCAGAGAGAC+AGG - chr1_3:48525427-48525446 Msa0122190:CDS 50.0%
GCTGTCACATTCACAGTCAC+AGG + chr1_3:48526247-48526266 None:intergenic 50.0%
AGATGCATTGAGGGTTGCCA+AGG - chr1_3:48526327-48526346 Msa0122190:CDS 50.0%
ATAAGGCGAACGATTCGCGT+TGG - chr1_3:48526373-48526392 Msa0122190:CDS 50.0%
CTGTGGCATGTCTAAGAGGG+AGG - chr1_3:48525408-48525427 Msa0122190:CDS 55.0%
CTGTGGCATGTCTAAGAGGG+AGG - chr1_3:48525408-48525427 Msa0122190:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 48525031 48526779 48525031 ID=Msa0122190;Name=Msa0122190
chr1_3 mRNA 48525031 48526779 48525031 ID=Msa0122190-mRNA-1;Parent=Msa0122190;Name=Msa0122190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=132|1|1|1|1|1|4|374|280
chr1_3 exon 48525031 48525651 48525031 ID=Msa0122190-mRNA-1:exon:14664;Parent=Msa0122190-mRNA-1
chr1_3 exon 48525772 48526145 48525772 ID=Msa0122190-mRNA-1:exon:14663;Parent=Msa0122190-mRNA-1
chr1_3 exon 48526317 48526443 48526317 ID=Msa0122190-mRNA-1:exon:14662;Parent=Msa0122190-mRNA-1
chr1_3 exon 48526553 48526779 48526553 ID=Msa0122190-mRNA-1:exon:14661;Parent=Msa0122190-mRNA-1
chr1_3 five_prime_UTR 48526648 48526779 48526648 ID=Msa0122190-mRNA-1:five_prime_utr;Parent=Msa0122190-mRNA-1
chr1_3 CDS 48526553 48526647 48526553 ID=Msa0122190-mRNA-1:cds;Parent=Msa0122190-mRNA-1
chr1_3 CDS 48526317 48526443 48526317 ID=Msa0122190-mRNA-1:cds;Parent=Msa0122190-mRNA-1
chr1_3 CDS 48525772 48526145 48525772 ID=Msa0122190-mRNA-1:cds;Parent=Msa0122190-mRNA-1
chr1_3 CDS 48525405 48525651 48525405 ID=Msa0122190-mRNA-1:cds;Parent=Msa0122190-mRNA-1
chr1_3 three_prime_UTR 48525031 48525404 48525031 ID=Msa0122190-mRNA-1:three_prime_utr;Parent=Msa0122190-mRNA-1
Gene Sequence

>Msa0122190

ATGGGAACTTTCTCTGCTCAAACTGAAACTGAAACTTCAGATCATAAGCAAATGCATGTCATAACTGCTAACACCAAACAGGACCACTATTGCAGCAGCAAGAAAATGGAAGTAGATGAAGGTTTGAATTTGAACACTGTGGCATGTCTAAGAGGGAGGTTACTAGCAGAGAGACAGGCTTCAAAAGTAGCTAAGGAACAAGCAGAATTAATGGCCAATAAGTTGGTTGAGTTGGAAAAATTGGTTAAAGAAGAGATCAAATTAAGAGATAAATCTGAGAGAAAGCTTAAATTTTTAAGGAAAAAGCTTGAATCTTTCAGCAAATCCTCCAAATCAAAACAATTGGTGCATTCTGATTCATCACAGAATTGTGAAAATTCTTGTGGGTCATCATCATCAATTAGTTCAAATTCAAATTCCAAATATTATTCAGAAGCAAATGAAACACAAAATCAAGTACCAAATCAAATTGTTTCAGAGACACAGAATAGTTCATCATCCACAACAAAAGATTGTGATTCTCAGATTACTGATGATTCTAGTAGTAATTCAAAACCAAGCTCTGACTTTGAGAATTTGAAGAATGATGAAAGCAGGATTTCTAGTTTAAGCACAAAATCATCAGTGACAGAGAATGAAAATGATCATGCAGAATCCTTTGATAATTCTTTGGCATTAGTTCCTGTGACTGTGAATGTGACAGCAACATCTCAAGCTACTGCAACTAATCACAAACAAGTCAATGAAAGTGTCTTTGAAGCTCTAGATGCATTGAGGGTTGCCAAGGAAAAGCTTCAAAGTTCCTTAGGAATAAGGCGAACGATTCGCGTTGGCCTAATGTAA
Protein sequence

>Msa0122190

MGTFSAQTETETSDHKQMHVITANTKQDHYCSSKKMEVDEGLNLNTVACLRGRLLAERQASKVAKEQAELMANKLVELEKLVKEEIKLRDKSERKLKFLRKKLESFSKSSKSKQLVHSDSSQNCENSCGSSSSISSNSNSKYYSEANETQNQVPNQIVSETQNSSSSTTKDCDSQITDDSSSNSKPSSDFENLKNDESRISSLSTKSSVTENENDHAESFDNSLALVPVTVNVTATSQATATNHKQVNESVFEALDALRVAKEKLQSSLGIRRTIRVGLM*