AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074240 MtrunA17_Chr1g0181911 94.694 245 8 3 35 278 1 241 4.11e-160 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074240 AT2G37300.4 66.667 48 16 0 45 92 13 60 8.41e-14 68.2
Msa0074240 AT2G37300.1 66.667 48 16 0 45 92 13 60 8.41e-14 68.2
Msa0074240 AT2G37300.3 66.667 48 16 0 45 92 35 82 8.64e-14 68.9
Msa0074240 AT2G37300.6 66.667 48 16 0 45 92 35 82 8.64e-14 68.9
Msa0074240 AT2G37300.5 66.667 48 16 0 45 92 35 82 8.64e-14 68.9
Msa0074240 AT2G37300.2 66.667 48 16 0 45 92 92 139 3.58e-13 68.2

Find 51 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCTTCTGAATAATATT+TGG 0.158875 1_2:+48548434 None:intergenic
GACAGTAATGAGTGCATATT+TGG 0.183388 1_2:-48547876 Msa0074240:three_prime_UTR
ATTTAGCCTTAGTCCATATT+TGG 0.185131 1_2:+48547770 None:intergenic
TTCAAAGTTCCTTAGGAATA+AGG 0.235437 1_2:-48547939 Msa0074240:CDS
ATTTACGGTCGGTCCAAATA+TGG 0.256611 1_2:-48547783 Msa0074240:three_prime_UTR
CTAACATCTTCAAACTCTTT+TGG 0.261115 1_2:-48549169 Msa0074240:five_prime_UTR
TAAGGAACAAGCAGAATTAA+TGG 0.292596 1_2:-48548839 Msa0074240:CDS
AGAATCCTTTGATAATTCTT+TGG 0.307251 1_2:-48548082 Msa0074240:CDS
AGCAGAATTAATGGCCAATA+AGG 0.318363 1_2:-48548830 Msa0074240:intron
CAGCAATAACCTTGAGTAAT+GGG 0.327225 1_2:-48547675 Msa0074240:three_prime_UTR
ATCCTCCAAATCAAAACAAT+TGG 0.343305 1_2:-48548529 Msa0074240:CDS
TCCTCCAAATCAAAACAATT+GGG 0.405024 1_2:-48548528 Msa0074240:CDS
TGATTCTGTAATACAAAAGA+TGG 0.407656 1_2:-48549138 Msa0074240:exon
GAAAAGCTTCAAAGTTCCTT+AGG 0.408448 1_2:-48547946 Msa0074240:CDS
ACAAAATAATTGAACCTCAT+AGG 0.433436 1_2:+48547553 None:intergenic
CCAAACAGGACCACTATTGC+AGG 0.439932 1_2:-48549046 Msa0074240:intron
TGAAGCTCTAGATGCATTGA+GGG 0.457114 1_2:-48547977 Msa0074240:CDS
CCTGCAATAGTGGTCCTGTT+TGG 0.464615 1_2:+48549046 None:intergenic
TTAACGCTTCTTCTCCTATG+AGG 0.468827 1_2:-48547567 Msa0074240:three_prime_UTR
ACAGGCTTCAAAAGTAGCTA+AGG 0.474167 1_2:-48548857 Msa0074240:CDS
AAATTCTCAAACTCAGAGCT+TGG 0.475080 1_2:+48548300 None:intergenic
ATTTGAAGAATGATGAAAGC+AGG 0.488578 1_2:-48548281 Msa0074240:intron
GAGGTTACTAGCAGAGAGAC+AGG 0.488693 1_2:-48548875 Msa0074240:CDS
TCGGAGTGAGAAGTTACATT+AGG 0.490921 1_2:+48547899 None:intergenic
CCACAGAAAACATGTGATGT+TGG 0.491727 1_2:-48547604 Msa0074240:three_prime_UTR
AACACTGTGGCATGTCTAAG+AGG 0.493592 1_2:-48548898 Msa0074240:CDS
GGTAAAGTTCTTGTGAATTG+TGG 0.495003 1_2:-48547638 Msa0074240:three_prime_UTR
CAGAATTGTGAAAATTCTTG+TGG 0.501754 1_2:-48548489 Msa0074240:CDS
CATAACTGCTAACACCAAAC+AGG 0.505299 1_2:-48549060 Msa0074240:CDS
AATCGTTCGCCTTATTCCTA+AGG 0.511083 1_2:+48547930 None:intergenic
ACAGCAATAACCTTGAGTAA+TGG 0.513860 1_2:-48547676 Msa0074240:three_prime_UTR
TTGAAGCTCTAGATGCATTG+AGG 0.524675 1_2:-48547978 Msa0074240:CDS
GGGAGAGATACCTGCAATAG+TGG 0.525589 1_2:+48549036 None:intergenic
TCTACCAATCCCATTACTCA+AGG 0.530854 1_2:+48547666 None:intergenic
AAGAAAATGGAAGTAGATGA+AGG 0.533758 1_2:-48548931 Msa0074240:CDS
CACAGAAAACATGTGATGTT+GGG 0.534731 1_2:-48547603 Msa0074240:three_prime_UTR
TAATGGGATTGGTAGAAGAA+TGG 0.537470 1_2:-48547659 Msa0074240:three_prime_UTR
GTCGGTCCAAATATGGACTA+AGG 0.537825 1_2:-48547776 Msa0074240:three_prime_UTR
ATATGCACTCATTACTGTCT+CGG 0.540267 1_2:+48547880 None:intergenic
AGAATTGTGAAAATTCTTGT+GGG 0.556054 1_2:-48548488 Msa0074240:CDS
GCTGTCACATTCACAGTCAC+AGG 0.564805 1_2:+48548051 None:intergenic
GATTCTGTAATACAAAAGAT+GGG 0.572788 1_2:-48549137 Msa0074240:exon
AGATGCATTGAGGGTTGCCA+AGG 0.577687 1_2:-48547968 Msa0074240:CDS
ATAACCTTGAGTAATGGGAT+TGG 0.584601 1_2:-48547670 Msa0074240:three_prime_UTR
TTCAGCATGTAGATAGAGAG+AGG 0.597216 1_2:-48547704 Msa0074240:three_prime_UTR
CCTCCAAATCAAAACAATTG+GGG 0.608612 1_2:-48548527 Msa0074240:CDS
TAATGCCAAAGAATTATCAA+AGG 0.628211 1_2:+48548077 None:intergenic
ATAAGGCGAACGATTCGCGT+TGG 0.628535 1_2:-48547922 Msa0074240:CDS
ACACTGTGGCATGTCTAAGA+GGG 0.632958 1_2:-48548897 Msa0074240:CDS
CTGTGGCATGTCTAAGAGGG+AGG 0.653297 1_2:-48548894 Msa0074240:CDS
AGGTTTGAATTTGAACACTG+TGG 0.756754 1_2:-48548911 Msa0074240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTATTACCTTAT+TGG + chr1_2:48547976-48547995 None:intergenic 10.0%
!! AAAAAATATTATTACCTTAT+TGG + chr1_2:48547976-48547995 None:intergenic 10.0%
!!! ATGTTAGTATTTTTGAAAAA+GGG + chr1_2:48547607-48547626 None:intergenic 15.0%
!!! ATGTTAGTATTTTTGAAAAA+GGG + chr1_2:48547607-48547626 None:intergenic 15.0%
!!! GATGTTAGTATTTTTGAAAA+AGG + chr1_2:48547608-48547627 None:intergenic 20.0%
!!! AGAGAAAGCTTAAATTTTTA+AGG - chr1_2:48548214-48548233 Msa0074240:intron 20.0%
!! ATTTGCTTCTGAATAATATT+TGG + chr1_2:48548358-48548377 None:intergenic 20.0%
!!! ACATGATTTTGCTTAATTTA+CGG - chr1_2:48548991-48549010 Msa0074240:intron 20.0%
!!! GATGTTAGTATTTTTGAAAA+AGG + chr1_2:48547608-48547627 None:intergenic 20.0%
!!! AGAGAAAGCTTAAATTTTTA+AGG - chr1_2:48548214-48548233 Msa0074240:intron 20.0%
!! ATTTGCTTCTGAATAATATT+TGG + chr1_2:48548358-48548377 None:intergenic 20.0%
!!! ACATGATTTTGCTTAATTTA+CGG - chr1_2:48548991-48549010 Msa0074240:intron 20.0%
! TGATTCTGTAATACAAAAGA+TGG - chr1_2:48547651-48547670 Msa0074240:three_prime_UTR 25.0%
! GATTCTGTAATACAAAAGAT+GGG - chr1_2:48547652-48547671 Msa0074240:three_prime_UTR 25.0%
! GAATGACATTGTTGAATTAT+TGG - chr1_2:48547825-48547844 Msa0074240:three_prime_UTR 25.0%
! CATTGTTACTATCAGTTAAA+AGG + chr1_2:48548000-48548019 None:intergenic 25.0%
!! TGTTTAGAACATCATCATAA+AGG - chr1_2:48548044-48548063 Msa0074240:CDS 25.0%
!!! GAAAGTTATTTTTTGACAGT+TGG - chr1_2:48548140-48548159 Msa0074240:intron 25.0%
! AGAATTGTGAAAATTCTTGT+GGG - chr1_2:48548301-48548320 Msa0074240:CDS 25.0%
!!! TGTTGTCAATTTTGGAATTT+TGG - chr1_2:48548615-48548634 Msa0074240:CDS 25.0%
!! AGAATCCTTTGATAATTCTT+TGG - chr1_2:48548707-48548726 Msa0074240:intron 25.0%
! TAATGCCAAAGAATTATCAA+AGG + chr1_2:48548715-48548734 None:intergenic 25.0%
! ACAAAATAATTGAACCTCAT+AGG + chr1_2:48549239-48549258 None:intergenic 25.0%
! GTGTATTTGAAAAACAAAGA+TGG + chr1_2:48547540-48547559 None:intergenic 25.0%
! TGATTCTGTAATACAAAAGA+TGG - chr1_2:48547651-48547670 Msa0074240:three_prime_UTR 25.0%
! GATTCTGTAATACAAAAGAT+GGG - chr1_2:48547652-48547671 Msa0074240:three_prime_UTR 25.0%
! GAATGACATTGTTGAATTAT+TGG - chr1_2:48547825-48547844 Msa0074240:three_prime_UTR 25.0%
! CATTGTTACTATCAGTTAAA+AGG + chr1_2:48548000-48548019 None:intergenic 25.0%
!! TGTTTAGAACATCATCATAA+AGG - chr1_2:48548044-48548063 Msa0074240:CDS 25.0%
!!! GAAAGTTATTTTTTGACAGT+TGG - chr1_2:48548140-48548159 Msa0074240:intron 25.0%
! AGAATTGTGAAAATTCTTGT+GGG - chr1_2:48548301-48548320 Msa0074240:CDS 25.0%
!!! TGTTGTCAATTTTGGAATTT+TGG - chr1_2:48548615-48548634 Msa0074240:CDS 25.0%
!! AGAATCCTTTGATAATTCTT+TGG - chr1_2:48548707-48548726 Msa0074240:intron 25.0%
! TAATGCCAAAGAATTATCAA+AGG + chr1_2:48548715-48548734 None:intergenic 25.0%
! ACAAAATAATTGAACCTCAT+AGG + chr1_2:48549239-48549258 None:intergenic 25.0%
! CTAACATCTTCAAACTCTTT+TGG - chr1_2:48547620-48547639 Msa0074240:three_prime_UTR 30.0%
!!! TGGTTTTAACAGCAAGAAAA+TGG - chr1_2:48547845-48547864 Msa0074240:three_prime_UTR 30.0%
AAGAAAATGGAAGTAGATGA+AGG - chr1_2:48547858-48547877 Msa0074240:three_prime_UTR 30.0%
TAAGGAACAAGCAGAATTAA+TGG - chr1_2:48547950-48547969 Msa0074240:CDS 30.0%
ATCCTCCAAATCAAAACAAT+TGG - chr1_2:48548260-48548279 Msa0074240:intron 30.0%
TCCTCCAAATCAAAACAATT+GGG - chr1_2:48548261-48548280 Msa0074240:intron 30.0%
CAGAATTGTGAAAATTCTTG+TGG - chr1_2:48548300-48548319 Msa0074240:CDS 30.0%
!!! GTCTCTGAAACATTTTGATT+TGG + chr1_2:48548399-48548418 None:intergenic 30.0%
! AGAATCACAATCTTTTGATG+TGG + chr1_2:48548436-48548455 None:intergenic 30.0%
ATTTGAAGAATGATGAAAGC+AGG - chr1_2:48548508-48548527 Msa0074240:CDS 30.0%
! TTTGAGCATGTTGTCAATTT+TGG - chr1_2:48548607-48548626 Msa0074240:CDS 30.0%
!!! ATTTTGGTGTCATGTTTTTC+AGG - chr1_2:48548631-48548650 Msa0074240:CDS 30.0%
TTCAAAGTTCCTTAGGAATA+AGG - chr1_2:48548850-48548869 Msa0074240:CDS 30.0%
!!! TGCACTGTAATTTTTTACAC+TGG + chr1_2:48548969-48548988 None:intergenic 30.0%
! GATTTTGCTTAATTTACGGT+CGG - chr1_2:48548995-48549014 Msa0074240:intron 30.0%
!! ATTTAGCCTTAGTCCATATT+TGG + chr1_2:48549022-48549041 None:intergenic 30.0%
! CTAACATCTTCAAACTCTTT+TGG - chr1_2:48547620-48547639 Msa0074240:three_prime_UTR 30.0%
!!! TGGTTTTAACAGCAAGAAAA+TGG - chr1_2:48547845-48547864 Msa0074240:three_prime_UTR 30.0%
AAGAAAATGGAAGTAGATGA+AGG - chr1_2:48547858-48547877 Msa0074240:three_prime_UTR 30.0%
TAAGGAACAAGCAGAATTAA+TGG - chr1_2:48547950-48547969 Msa0074240:CDS 30.0%
ATCCTCCAAATCAAAACAAT+TGG - chr1_2:48548260-48548279 Msa0074240:intron 30.0%
TCCTCCAAATCAAAACAATT+GGG - chr1_2:48548261-48548280 Msa0074240:intron 30.0%
CAGAATTGTGAAAATTCTTG+TGG - chr1_2:48548300-48548319 Msa0074240:CDS 30.0%
!!! GTCTCTGAAACATTTTGATT+TGG + chr1_2:48548399-48548418 None:intergenic 30.0%
! AGAATCACAATCTTTTGATG+TGG + chr1_2:48548436-48548455 None:intergenic 30.0%
ATTTGAAGAATGATGAAAGC+AGG - chr1_2:48548508-48548527 Msa0074240:CDS 30.0%
! TTTGAGCATGTTGTCAATTT+TGG - chr1_2:48548607-48548626 Msa0074240:CDS 30.0%
!!! ATTTTGGTGTCATGTTTTTC+AGG - chr1_2:48548631-48548650 Msa0074240:CDS 30.0%
TTCAAAGTTCCTTAGGAATA+AGG - chr1_2:48548850-48548869 Msa0074240:CDS 30.0%
!!! TGCACTGTAATTTTTTACAC+TGG + chr1_2:48548969-48548988 None:intergenic 30.0%
! GATTTTGCTTAATTTACGGT+CGG - chr1_2:48548995-48549014 Msa0074240:intron 30.0%
!! ATTTAGCCTTAGTCCATATT+TGG + chr1_2:48549022-48549041 None:intergenic 30.0%
AGGTTTGAATTTGAACACTG+TGG - chr1_2:48547878-48547897 Msa0074240:three_prime_UTR 35.0%
AGCAGAATTAATGGCCAATA+AGG - chr1_2:48547959-48547978 Msa0074240:CDS 35.0%
! TTTTTGACAGTTGGTTGAGT+TGG - chr1_2:48548149-48548168 Msa0074240:intron 35.0%
!! GTTGGTTGAGTTGGAAAAAT+TGG - chr1_2:48548158-48548177 Msa0074240:intron 35.0%
CCTCCAAATCAAAACAATTG+GGG - chr1_2:48548262-48548281 Msa0074240:intron 35.0%
!!! ATGCCCCAATTGTTTTGATT+TGG + chr1_2:48548268-48548287 None:intergenic 35.0%
AAATTCTCAAACTCAGAGCT+TGG + chr1_2:48548492-48548511 None:intergenic 35.0%
GAAAAGCTTCAAAGTTCCTT+AGG - chr1_2:48548843-48548862 Msa0074240:CDS 35.0%
ATATGCACTCATTACTGTCT+CGG + chr1_2:48548912-48548931 None:intergenic 35.0%
GACAGTAATGAGTGCATATT+TGG - chr1_2:48548913-48548932 Msa0074240:CDS 35.0%
ACAGCAATAACCTTGAGTAA+TGG - chr1_2:48549113-48549132 Msa0074240:CDS 35.0%
CAGCAATAACCTTGAGTAAT+GGG - chr1_2:48549114-48549133 Msa0074240:CDS 35.0%
! ATAACCTTGAGTAATGGGAT+TGG - chr1_2:48549119-48549138 Msa0074240:CDS 35.0%
! TAATGGGATTGGTAGAAGAA+TGG - chr1_2:48549130-48549149 Msa0074240:exon 35.0%
GGTAAAGTTCTTGTGAATTG+TGG - chr1_2:48549151-48549170 Msa0074240:five_prime_UTR 35.0%
CACAGAAAACATGTGATGTT+GGG - chr1_2:48549186-48549205 Msa0074240:five_prime_UTR 35.0%
AGGTTTGAATTTGAACACTG+TGG - chr1_2:48547878-48547897 Msa0074240:three_prime_UTR 35.0%
AGCAGAATTAATGGCCAATA+AGG - chr1_2:48547959-48547978 Msa0074240:CDS 35.0%
! TTTTTGACAGTTGGTTGAGT+TGG - chr1_2:48548149-48548168 Msa0074240:intron 35.0%
!! GTTGGTTGAGTTGGAAAAAT+TGG - chr1_2:48548158-48548177 Msa0074240:intron 35.0%
CCTCCAAATCAAAACAATTG+GGG - chr1_2:48548262-48548281 Msa0074240:intron 35.0%
!!! ATGCCCCAATTGTTTTGATT+TGG + chr1_2:48548268-48548287 None:intergenic 35.0%
AAATTCTCAAACTCAGAGCT+TGG + chr1_2:48548492-48548511 None:intergenic 35.0%
GAAAAGCTTCAAAGTTCCTT+AGG - chr1_2:48548843-48548862 Msa0074240:CDS 35.0%
ATATGCACTCATTACTGTCT+CGG + chr1_2:48548912-48548931 None:intergenic 35.0%
GACAGTAATGAGTGCATATT+TGG - chr1_2:48548913-48548932 Msa0074240:CDS 35.0%
ACAGCAATAACCTTGAGTAA+TGG - chr1_2:48549113-48549132 Msa0074240:CDS 35.0%
CAGCAATAACCTTGAGTAAT+GGG - chr1_2:48549114-48549133 Msa0074240:CDS 35.0%
! ATAACCTTGAGTAATGGGAT+TGG - chr1_2:48549119-48549138 Msa0074240:CDS 35.0%
! TAATGGGATTGGTAGAAGAA+TGG - chr1_2:48549130-48549149 Msa0074240:exon 35.0%
GGTAAAGTTCTTGTGAATTG+TGG - chr1_2:48549151-48549170 Msa0074240:five_prime_UTR 35.0%
CACAGAAAACATGTGATGTT+GGG - chr1_2:48549186-48549205 Msa0074240:five_prime_UTR 35.0%
CATAACTGCTAACACCAAAC+AGG - chr1_2:48547729-48547748 Msa0074240:three_prime_UTR 40.0%
ACAGGCTTCAAAAGTAGCTA+AGG - chr1_2:48547932-48547951 Msa0074240:CDS 40.0%
!!! CCCCAATTGTTTTGATTTGG+AGG + chr1_2:48548265-48548284 None:intergenic 40.0%
!! TTGAAGCTCTAGATGCATTG+AGG - chr1_2:48548811-48548830 Msa0074240:intron 40.0%
!! TGAAGCTCTAGATGCATTGA+GGG - chr1_2:48548812-48548831 Msa0074240:intron 40.0%
!!! GGAACTTTGAAGCTTTTCCT+TGG + chr1_2:48548841-48548860 None:intergenic 40.0%
! AATCGTTCGCCTTATTCCTA+AGG + chr1_2:48548862-48548881 None:intergenic 40.0%
TCGGAGTGAGAAGTTACATT+AGG + chr1_2:48548893-48548912 None:intergenic 40.0%
ATTTACGGTCGGTCCAAATA+TGG - chr1_2:48549006-48549025 Msa0074240:intron 40.0%
TTCAGCATGTAGATAGAGAG+AGG - chr1_2:48549085-48549104 Msa0074240:CDS 40.0%
TCTACCAATCCCATTACTCA+AGG + chr1_2:48549126-48549145 None:intergenic 40.0%
! CCAACATCACATGTTTTCTG+TGG + chr1_2:48549188-48549207 None:intergenic 40.0%
CCACAGAAAACATGTGATGT+TGG - chr1_2:48549185-48549204 Msa0074240:five_prime_UTR 40.0%
TTAACGCTTCTTCTCCTATG+AGG - chr1_2:48549222-48549241 Msa0074240:five_prime_UTR 40.0%
CATAACTGCTAACACCAAAC+AGG - chr1_2:48547729-48547748 Msa0074240:three_prime_UTR 40.0%
ACAGGCTTCAAAAGTAGCTA+AGG - chr1_2:48547932-48547951 Msa0074240:CDS 40.0%
!!! CCCCAATTGTTTTGATTTGG+AGG + chr1_2:48548265-48548284 None:intergenic 40.0%
!! TTGAAGCTCTAGATGCATTG+AGG - chr1_2:48548811-48548830 Msa0074240:intron 40.0%
!! TGAAGCTCTAGATGCATTGA+GGG - chr1_2:48548812-48548831 Msa0074240:intron 40.0%
!!! GGAACTTTGAAGCTTTTCCT+TGG + chr1_2:48548841-48548860 None:intergenic 40.0%
! AATCGTTCGCCTTATTCCTA+AGG + chr1_2:48548862-48548881 None:intergenic 40.0%
TCGGAGTGAGAAGTTACATT+AGG + chr1_2:48548893-48548912 None:intergenic 40.0%
ATTTACGGTCGGTCCAAATA+TGG - chr1_2:48549006-48549025 Msa0074240:intron 40.0%
TTCAGCATGTAGATAGAGAG+AGG - chr1_2:48549085-48549104 Msa0074240:CDS 40.0%
TCTACCAATCCCATTACTCA+AGG + chr1_2:48549126-48549145 None:intergenic 40.0%
! CCAACATCACATGTTTTCTG+TGG + chr1_2:48549188-48549207 None:intergenic 40.0%
CCACAGAAAACATGTGATGT+TGG - chr1_2:48549185-48549204 Msa0074240:five_prime_UTR 40.0%
TTAACGCTTCTTCTCCTATG+AGG - chr1_2:48549222-48549241 Msa0074240:five_prime_UTR 40.0%
AACACTGTGGCATGTCTAAG+AGG - chr1_2:48547891-48547910 Msa0074240:three_prime_UTR 45.0%
ACACTGTGGCATGTCTAAGA+GGG - chr1_2:48547892-48547911 Msa0074240:three_prime_UTR 45.0%
! GTCGGTCCAAATATGGACTA+AGG - chr1_2:48549013-48549032 Msa0074240:intron 45.0%
AACACTGTGGCATGTCTAAG+AGG - chr1_2:48547891-48547910 Msa0074240:three_prime_UTR 45.0%
ACACTGTGGCATGTCTAAGA+GGG - chr1_2:48547892-48547911 Msa0074240:three_prime_UTR 45.0%
! GTCGGTCCAAATATGGACTA+AGG - chr1_2:48549013-48549032 Msa0074240:intron 45.0%
CCTGCAATAGTGGTCCTGTT+TGG + chr1_2:48547746-48547765 None:intergenic 50.0%
CCAAACAGGACCACTATTGC+AGG - chr1_2:48547743-48547762 Msa0074240:three_prime_UTR 50.0%
GGGAGAGATACCTGCAATAG+TGG + chr1_2:48547756-48547775 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_2:48547776-48547795 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_2:48547775-48547794 None:intergenic 50.0%
GAGGTTACTAGCAGAGAGAC+AGG - chr1_2:48547914-48547933 Msa0074240:CDS 50.0%
GCTGTCACATTCACAGTCAC+AGG + chr1_2:48548741-48548760 None:intergenic 50.0%
AGATGCATTGAGGGTTGCCA+AGG - chr1_2:48548821-48548840 Msa0074240:intron 50.0%
ATAAGGCGAACGATTCGCGT+TGG - chr1_2:48548867-48548886 Msa0074240:CDS 50.0%
CCTGCAATAGTGGTCCTGTT+TGG + chr1_2:48547746-48547765 None:intergenic 50.0%
CCAAACAGGACCACTATTGC+AGG - chr1_2:48547743-48547762 Msa0074240:three_prime_UTR 50.0%
GGGAGAGATACCTGCAATAG+TGG + chr1_2:48547756-48547775 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_2:48547776-48547795 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_2:48547775-48547794 None:intergenic 50.0%
GAGGTTACTAGCAGAGAGAC+AGG - chr1_2:48547914-48547933 Msa0074240:CDS 50.0%
GCTGTCACATTCACAGTCAC+AGG + chr1_2:48548741-48548760 None:intergenic 50.0%
AGATGCATTGAGGGTTGCCA+AGG - chr1_2:48548821-48548840 Msa0074240:intron 50.0%
ATAAGGCGAACGATTCGCGT+TGG - chr1_2:48548867-48548886 Msa0074240:CDS 50.0%
CTGTGGCATGTCTAAGAGGG+AGG - chr1_2:48547895-48547914 Msa0074240:exon 55.0%
CTGTGGCATGTCTAAGAGGG+AGG - chr1_2:48547895-48547914 Msa0074240:exon 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48547538 48549273 48547538 ID=Msa0074240;Name=Msa0074240
chr1_2 mRNA 48547538 48549273 48547538 ID=Msa0074240-mRNA-1;Parent=Msa0074240;Name=Msa0074240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|4|374|278
chr1_2 exon 48547538 48548158 48547538 ID=Msa0074240-mRNA-1:exon:14755;Parent=Msa0074240-mRNA-1
chr1_2 exon 48548282 48548652 48548282 ID=Msa0074240-mRNA-1:exon:14754;Parent=Msa0074240-mRNA-1
chr1_2 exon 48548831 48548954 48548831 ID=Msa0074240-mRNA-1:exon:14753;Parent=Msa0074240-mRNA-1
chr1_2 exon 48549047 48549273 48549047 ID=Msa0074240-mRNA-1:exon:14752;Parent=Msa0074240-mRNA-1
chr1_2 five_prime_UTR 48549142 48549273 48549142 ID=Msa0074240-mRNA-1:five_prime_utr;Parent=Msa0074240-mRNA-1
chr1_2 CDS 48549047 48549141 48549047 ID=Msa0074240-mRNA-1:cds;Parent=Msa0074240-mRNA-1
chr1_2 CDS 48548831 48548954 48548831 ID=Msa0074240-mRNA-1:cds;Parent=Msa0074240-mRNA-1
chr1_2 CDS 48548282 48548652 48548282 ID=Msa0074240-mRNA-1:cds;Parent=Msa0074240-mRNA-1
chr1_2 CDS 48547912 48548158 48547912 ID=Msa0074240-mRNA-1:cds;Parent=Msa0074240-mRNA-1
chr1_2 three_prime_UTR 48547538 48547911 48547538 ID=Msa0074240-mRNA-1:three_prime_utr;Parent=Msa0074240-mRNA-1
Gene Sequence

>Msa0074240

ATGGGAACTTTCTCTGCTCAAACTGAAACTGAAACTTCAGATCATAAGCAAATGCATGTCATAACTGCTAACACCAAACAGGACCACTATTGCAGCAAGAAAATGGAAGTAGATGAAGGTTTGAATTTGAACACTGTGGCATGTCTAAGAGGGAGGTTACTAGCAGAGAGACAGGCTTCAAAAGTAGCTAAGGAACAAGCAGAATTAATGGCCAATAAGTTGGTTGAGTTGGAAAAATTGGTTAAAGAAGAGATCAAATTAAGAGACAAATCTGAGAGAAAGCTTAAATTTTTAAGGAAAAAGCTTGAATCTTTTAGCAAATCCTCCAAATCAAAACAATTGGGGCATTCTGATTCATCACAGAATTGTGAAAATTCTTGTGGGTCATCATCATCAATTAGTTCAAATTCAAATTCCAAATATTATTCAGAAGCAAATGAAACACAAAATCTAGTACCAAATCAAAATGTTTCAGAGACACAGAATAGTTCATCCACATCAAAAGATTGTGATTCTCAGATTACTGATGATTCAAGTAGTAATTCAAAACCAAGCTCTGAGTTTGAGAATTTGAAGAATGATGAAAGCAGGATTTCTAGTTTAAGCACAAAATCATCAGTGACAGAGAATGAAAATGATCATGCAGAATCCTTTGATAATTCTTTGGCATTAGTTCCTGTGACTGTGAATGTGACAGCAACATCTCAAGCTACTGCAACTAATCACAAACAAGTCAATGAAAGTGTCTTTGAAGCTCTAGATGCATTGAGGGTTGCCAAGGAAAAGCTTCAAAGTTCCTTAGGAATAAGGCGAACGATTCGCGTTGGCCTAATGTAA

Protein sequence

>Msa0074240

MGTFSAQTETETSDHKQMHVITANTKQDHYCSKKMEVDEGLNLNTVACLRGRLLAERQASKVAKEQAELMANKLVELEKLVKEEIKLRDKSERKLKFLRKKLESFSKSSKSKQLGHSDSSQNCENSCGSSSSISSNSNSKYYSEANETQNLVPNQNVSETQNSSSTSKDCDSQITDDSSSNSKPSSEFENLKNDESRISSLSTKSSVTENENDHAESFDNSLALVPVTVNVTATSQATATNHKQVNESVFEALDALRVAKEKLQSSLGIRRTIRVGLM*