AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102770 MtrunA17_Chr1g0203361 98.718 78 1 0 1 78 776 853 4.12e-44 150
Msa1102770 MtrunA17_Chr5g0397721 72.727 55 15 0 23 77 1007 1061 3.02e-19 80.1
Msa1102770 MtrunA17_Chr8g0386571 75.556 45 11 0 33 77 990 1034 5.99e-17 73.6
Msa1102770 MtrunA17_Chr3g0115391 54.545 55 25 0 22 76 1906 1960 1.44e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102770 AT5G52280.1 66.234 77 25 1 1 77 777 852 4.17e-24 94.4
Msa1102770 AT5G41140.1 77.193 57 13 0 21 77 926 982 3.61e-22 88.6
Msa1102770 AT5G41140.2 77.193 57 13 0 21 77 919 975 3.79e-22 88.6
Msa1102770 AT1G63300.1 71.429 56 16 0 23 78 974 1029 3.14e-19 80.5
Msa1102770 AT1G22060.2 56.364 55 24 0 23 77 1930 1984 3.64e-14 65.9
Msa1102770 AT1G22060.1 56.364 55 24 0 23 77 1930 1984 3.64e-14 65.9

Find 47 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGCTTTGATTGAGAATT+TGG 0.128846 7_3:+36704073 Msa1102770:three_prime_UTR
TTCAAAAGCAGTTTGGTTCT+TGG 0.250839 7_3:+36704276 Msa1102770:three_prime_UTR
AAAATAGAAACTACTAAAAT+TGG 0.254158 7_3:-36704198 None:intergenic
TATTCGTGTTCCTTTCCTTT+AGG 0.264361 7_3:-36703584 None:intergenic
AAAGGAAAGGAACACGAATA+TGG 0.334534 7_3:+36703587 Msa1102770:CDS
AGTTGATGTACAGGATAAAT+AGG 0.345911 7_3:-36703861 None:intergenic
TATGATGTTGTAGCCTCATA+TGG 0.360562 7_3:+36703978 Msa1102770:three_prime_UTR
TTGTAACCCCTGTATATGTT+TGG 0.372707 7_3:-36703762 None:intergenic
CATTCAATAATTCCTTTGTA+AGG 0.376479 7_3:-36703551 None:intergenic
GAAGAACTAGAACTCTTTGC+AGG 0.398652 7_3:+36703725 Msa1102770:exon
GGAAACTGAACTGAAAGAAA+TGG 0.401729 7_3:+36703608 Msa1102770:CDS
GTTTCATACCAAACATATAC+AGG 0.407755 7_3:+36703754 Msa1102770:three_prime_UTR
TGTTACTTTCAAAAGCAGTT+TGG 0.414328 7_3:+36704269 Msa1102770:three_prime_UTR
GCAGTCAGCGCAGCAAATTT+CGG 0.421568 7_3:-36703906 None:intergenic
ATAAAACAGACTATGTAGTC+TGG 0.441515 7_3:+36704111 Msa1102770:three_prime_UTR
ACATCATACCCCTTGTTACC+TGG 0.442595 7_3:-36703963 None:intergenic
GACTACATGTGGCCCATATG+AGG 0.448512 7_3:-36703991 None:intergenic
GTCCGTACGGTGCATTGTCC+AGG 0.456330 7_3:+36703945 Msa1102770:three_prime_UTR
GCTGTACGTAATCTCAAGAA+TGG 0.473934 7_3:+36703699 Msa1102770:CDS
TTTGTAACATGAAAAGGGAA+TGG 0.481521 7_3:+36703304 None:intergenic
GAATGAAGTGGCGGTCCTAA+AGG 0.486341 7_3:+36703569 Msa1102770:CDS
ATTCTCAATCAAAGCATCAT+AGG 0.487620 7_3:-36704069 None:intergenic
TCTGAAATTTGCAGAGGTAG+AGG 0.487867 7_3:+36703653 Msa1102770:CDS
CTGAAATTTGCAGAGGTAGA+GGG 0.524057 7_3:+36703654 Msa1102770:CDS
AGAAAGACAACAGCTTGTTA+TGG 0.526698 7_3:+36703677 Msa1102770:CDS
TAAATTTGGTTACACCATCC+TGG 0.527114 7_3:-36703810 None:intergenic
AAAGGAATTATTGAATGAAG+TGG 0.532662 7_3:+36703557 Msa1102770:CDS
GGAATGGATGCTGCAAGCAC+TGG 0.546008 7_3:+36703320 Msa1102770:exon
GGTGCATTGTCCAGGTAACA+AGG 0.553894 7_3:+36703953 Msa1102770:three_prime_UTR
ATGATGTTGTAGCCTCATAT+GGG 0.558962 7_3:+36703979 Msa1102770:three_prime_UTR
AATTTGCTGCGCTGACTGCA+CGG 0.575216 7_3:+36703910 Msa1102770:three_prime_UTR
TACCTGGACAATGCACCGTA+CGG 0.577637 7_3:-36703947 None:intergenic
GATAAACATTTGACTACATG+TGG 0.600184 7_3:-36704002 None:intergenic
AACATATACAGGGGTTACAA+AGG 0.605528 7_3:+36703765 Msa1102770:three_prime_UTR
AAGTGGCGGTCCTAAAGGAA+AGG 0.605693 7_3:+36703574 Msa1102770:CDS
GATTAGTCTGAAATTTGCAG+AGG 0.613349 7_3:+36703647 Msa1102770:CDS
GTAATAGCAAGTCTGAAGGA+AGG 0.622029 7_3:+36703342 Msa1102770:CDS
TTTCATACCAAACATATACA+GGG 0.623324 7_3:+36703755 Msa1102770:three_prime_UTR
GTGCATTGTCCAGGTAACAA+GGG 0.627462 7_3:+36703954 Msa1102770:three_prime_UTR
AAGCAACTGTCAACTTACCT+CGG 0.633419 7_3:+36704150 Msa1102770:three_prime_UTR
ACTGGTAATAGCAAGTCTGA+AGG 0.635273 7_3:+36703338 Msa1102770:CDS
TATCATGATTACTACCAGGA+TGG 0.644495 7_3:+36703796 Msa1102770:three_prime_UTR
TGCATTGTCCAGGTAACAAG+GGG 0.647300 7_3:+36703955 Msa1102770:three_prime_UTR
TGATGCTGAACGCCTTACAA+AGG 0.649461 7_3:+36703539 Msa1102770:CDS
AAGATATCATGATTACTACC+AGG 0.654676 7_3:+36703792 Msa1102770:three_prime_UTR
GGAATTATTGAATGAAGTGG+CGG 0.655168 7_3:+36703560 Msa1102770:CDS
TTCATACCAAACATATACAG+GGG 0.700618 7_3:+36703756 Msa1102770:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATAAAAGTTAGTTTT+TGG - chr7_3:36703498-36703517 None:intergenic 10.0%
!!! AAACTAACTTTTATTATTTT+TGG + chr7_3:36703499-36703518 Msa1102770:intron 10.0%
!!! AAATAATAAAAGTTAGTTTT+TGG - chr7_3:36703498-36703517 None:intergenic 10.0%
!!! AAACTAACTTTTATTATTTT+TGG + chr7_3:36703499-36703518 Msa1102770:intron 10.0%
!! AAAATAGAAACTACTAAAAT+TGG - chr7_3:36704201-36704220 None:intergenic 15.0%
!! AAAATAGAAACTACTAAAAT+TGG - chr7_3:36704201-36704220 None:intergenic 15.0%
!!! TTATGTTTTATGTTGTACAT+AGG + chr7_3:36704220-36704239 Msa1102770:three_prime_UTR 20.0%
!!! TATGTTTTATGTTGTACATA+GGG + chr7_3:36704221-36704240 Msa1102770:three_prime_UTR 20.0%
!!! TTATGTTTTATGTTGTACAT+AGG + chr7_3:36704220-36704239 Msa1102770:three_prime_UTR 20.0%
!!! TATGTTTTATGTTGTACATA+GGG + chr7_3:36704221-36704240 Msa1102770:three_prime_UTR 20.0%
!!! CAAATGTTTTGTTATATGGA+TGG - chr7_3:36703435-36703454 None:intergenic 25.0%
! CATCCATATAACAAAACATT+TGG + chr7_3:36703433-36703452 Msa1102770:intron 25.0%
! CATTCAATAATTCCTTTGTA+AGG - chr7_3:36703554-36703573 None:intergenic 25.0%
! AAAGGAATTATTGAATGAAG+TGG + chr7_3:36703557-36703576 Msa1102770:CDS 25.0%
! TTTCATACCAAACATATACA+GGG + chr7_3:36703755-36703774 Msa1102770:three_prime_UTR 25.0%
!!! CAAAAAGTACTGGTTAAATT+TGG - chr7_3:36703827-36703846 None:intergenic 25.0%
!! AAAAATGTTAGTTGATGTAC+AGG - chr7_3:36703873-36703892 None:intergenic 25.0%
!! TATCATCTGTTTGACATTTT+TGG + chr7_3:36704021-36704040 Msa1102770:three_prime_UTR 25.0%
! CAAAAAAAATTAGTATACCG+AGG - chr7_3:36704170-36704189 None:intergenic 25.0%
!!! CTCGGTATACTAATTTTTTT+TGG + chr7_3:36704168-36704187 Msa1102770:three_prime_UTR 25.0%
!!! CAAATGTTTTGTTATATGGA+TGG - chr7_3:36703435-36703454 None:intergenic 25.0%
! CATCCATATAACAAAACATT+TGG + chr7_3:36703433-36703452 Msa1102770:intron 25.0%
! CATTCAATAATTCCTTTGTA+AGG - chr7_3:36703554-36703573 None:intergenic 25.0%
! AAAGGAATTATTGAATGAAG+TGG + chr7_3:36703557-36703576 Msa1102770:CDS 25.0%
! TTTCATACCAAACATATACA+GGG + chr7_3:36703755-36703774 Msa1102770:three_prime_UTR 25.0%
!!! CAAAAAGTACTGGTTAAATT+TGG - chr7_3:36703827-36703846 None:intergenic 25.0%
!! AAAAATGTTAGTTGATGTAC+AGG - chr7_3:36703873-36703892 None:intergenic 25.0%
!! TATCATCTGTTTGACATTTT+TGG + chr7_3:36704021-36704040 Msa1102770:three_prime_UTR 25.0%
! CAAAAAAAATTAGTATACCG+AGG - chr7_3:36704170-36704189 None:intergenic 25.0%
!!! CTCGGTATACTAATTTTTTT+TGG + chr7_3:36704168-36704187 Msa1102770:three_prime_UTR 25.0%
TTGTTATATGGATGGTAAGA+GGG - chr7_3:36703427-36703446 None:intergenic 30.0%
! TTTGTTATATGGATGGTAAG+AGG - chr7_3:36703428-36703447 None:intergenic 30.0%
!! GCACCAAATGTTTTGTTATA+TGG - chr7_3:36703439-36703458 None:intergenic 30.0%
GTTTCATACCAAACATATAC+AGG + chr7_3:36703754-36703773 Msa1102770:three_prime_UTR 30.0%
TTCATACCAAACATATACAG+GGG + chr7_3:36703756-36703775 Msa1102770:three_prime_UTR 30.0%
AAGATATCATGATTACTACC+AGG + chr7_3:36703792-36703811 Msa1102770:three_prime_UTR 30.0%
! AGTTGATGTACAGGATAAAT+AGG - chr7_3:36703864-36703883 None:intergenic 30.0%
GATAAACATTTGACTACATG+TGG - chr7_3:36704005-36704024 None:intergenic 30.0%
! ATTCTCAATCAAAGCATCAT+AGG - chr7_3:36704072-36704091 None:intergenic 30.0%
TGATGCTTTGATTGAGAATT+TGG + chr7_3:36704073-36704092 Msa1102770:three_prime_UTR 30.0%
ATAAAACAGACTATGTAGTC+TGG + chr7_3:36704111-36704130 Msa1102770:three_prime_UTR 30.0%
!! TGTTACTTTCAAAAGCAGTT+TGG + chr7_3:36704269-36704288 Msa1102770:three_prime_UTR 30.0%
TTGTTATATGGATGGTAAGA+GGG - chr7_3:36703427-36703446 None:intergenic 30.0%
! TTTGTTATATGGATGGTAAG+AGG - chr7_3:36703428-36703447 None:intergenic 30.0%
!! GCACCAAATGTTTTGTTATA+TGG - chr7_3:36703439-36703458 None:intergenic 30.0%
GTTTCATACCAAACATATAC+AGG + chr7_3:36703754-36703773 Msa1102770:three_prime_UTR 30.0%
TTCATACCAAACATATACAG+GGG + chr7_3:36703756-36703775 Msa1102770:three_prime_UTR 30.0%
AAGATATCATGATTACTACC+AGG + chr7_3:36703792-36703811 Msa1102770:three_prime_UTR 30.0%
! AGTTGATGTACAGGATAAAT+AGG - chr7_3:36703864-36703883 None:intergenic 30.0%
GATAAACATTTGACTACATG+TGG - chr7_3:36704005-36704024 None:intergenic 30.0%
! ATTCTCAATCAAAGCATCAT+AGG - chr7_3:36704072-36704091 None:intergenic 30.0%
TGATGCTTTGATTGAGAATT+TGG + chr7_3:36704073-36704092 Msa1102770:three_prime_UTR 30.0%
ATAAAACAGACTATGTAGTC+TGG + chr7_3:36704111-36704130 Msa1102770:three_prime_UTR 30.0%
!! TGTTACTTTCAAAAGCAGTT+TGG + chr7_3:36704269-36704288 Msa1102770:three_prime_UTR 30.0%
GATTGTGTTAAAGGGAACAA+GGG - chr7_3:36703399-36703418 None:intergenic 35.0%
TGATTGTGTTAAAGGGAACA+AGG - chr7_3:36703400-36703419 None:intergenic 35.0%
GGGTTCATGATTGTGTTAAA+GGG - chr7_3:36703407-36703426 None:intergenic 35.0%
AGGGTTCATGATTGTGTTAA+AGG - chr7_3:36703408-36703427 None:intergenic 35.0%
ATAACACAAATACGACGTTG+TGG - chr7_3:36703461-36703480 None:intergenic 35.0%
GGAATTATTGAATGAAGTGG+CGG + chr7_3:36703560-36703579 Msa1102770:CDS 35.0%
TATTCGTGTTCCTTTCCTTT+AGG - chr7_3:36703587-36703606 None:intergenic 35.0%
AAAGGAAAGGAACACGAATA+TGG + chr7_3:36703587-36703606 Msa1102770:CDS 35.0%
GGAAACTGAACTGAAAGAAA+TGG + chr7_3:36703608-36703627 Msa1102770:CDS 35.0%
!! GATTAGTCTGAAATTTGCAG+AGG + chr7_3:36703647-36703666 Msa1102770:CDS 35.0%
!! AGAAAGACAACAGCTTGTTA+TGG + chr7_3:36703677-36703696 Msa1102770:CDS 35.0%
TTGTAACCCCTGTATATGTT+TGG - chr7_3:36703765-36703784 None:intergenic 35.0%
AACATATACAGGGGTTACAA+AGG + chr7_3:36703765-36703784 Msa1102770:three_prime_UTR 35.0%
TATCATGATTACTACCAGGA+TGG + chr7_3:36703796-36703815 Msa1102770:three_prime_UTR 35.0%
TAAATTTGGTTACACCATCC+TGG - chr7_3:36703813-36703832 None:intergenic 35.0%
! AGCAGAAATGCAAAAAGTAC+TGG - chr7_3:36703837-36703856 None:intergenic 35.0%
TATGATGTTGTAGCCTCATA+TGG + chr7_3:36703978-36703997 Msa1102770:three_prime_UTR 35.0%
ATGATGTTGTAGCCTCATAT+GGG + chr7_3:36703979-36703998 Msa1102770:three_prime_UTR 35.0%
!!! TTGTACATAGGGCTAGTTTT+TGG + chr7_3:36704232-36704251 Msa1102770:three_prime_UTR 35.0%
!! TTCAAAAGCAGTTTGGTTCT+TGG + chr7_3:36704276-36704295 Msa1102770:three_prime_UTR 35.0%
!! GTTTGGTTCTTGGTAAATCA+CGG + chr7_3:36704286-36704305 Msa1102770:three_prime_UTR 35.0%
!! TTTGGTTCTTGGTAAATCAC+GGG + chr7_3:36704287-36704306 Msa1102770:three_prime_UTR 35.0%
GATTGTGTTAAAGGGAACAA+GGG - chr7_3:36703399-36703418 None:intergenic 35.0%
TGATTGTGTTAAAGGGAACA+AGG - chr7_3:36703400-36703419 None:intergenic 35.0%
GGGTTCATGATTGTGTTAAA+GGG - chr7_3:36703407-36703426 None:intergenic 35.0%
AGGGTTCATGATTGTGTTAA+AGG - chr7_3:36703408-36703427 None:intergenic 35.0%
ATAACACAAATACGACGTTG+TGG - chr7_3:36703461-36703480 None:intergenic 35.0%
GGAATTATTGAATGAAGTGG+CGG + chr7_3:36703560-36703579 Msa1102770:CDS 35.0%
TATTCGTGTTCCTTTCCTTT+AGG - chr7_3:36703587-36703606 None:intergenic 35.0%
AAAGGAAAGGAACACGAATA+TGG + chr7_3:36703587-36703606 Msa1102770:CDS 35.0%
GGAAACTGAACTGAAAGAAA+TGG + chr7_3:36703608-36703627 Msa1102770:CDS 35.0%
!! GATTAGTCTGAAATTTGCAG+AGG + chr7_3:36703647-36703666 Msa1102770:CDS 35.0%
!! AGAAAGACAACAGCTTGTTA+TGG + chr7_3:36703677-36703696 Msa1102770:CDS 35.0%
TTGTAACCCCTGTATATGTT+TGG - chr7_3:36703765-36703784 None:intergenic 35.0%
AACATATACAGGGGTTACAA+AGG + chr7_3:36703765-36703784 Msa1102770:three_prime_UTR 35.0%
TATCATGATTACTACCAGGA+TGG + chr7_3:36703796-36703815 Msa1102770:three_prime_UTR 35.0%
TAAATTTGGTTACACCATCC+TGG - chr7_3:36703813-36703832 None:intergenic 35.0%
! AGCAGAAATGCAAAAAGTAC+TGG - chr7_3:36703837-36703856 None:intergenic 35.0%
TATGATGTTGTAGCCTCATA+TGG + chr7_3:36703978-36703997 Msa1102770:three_prime_UTR 35.0%
ATGATGTTGTAGCCTCATAT+GGG + chr7_3:36703979-36703998 Msa1102770:three_prime_UTR 35.0%
!!! TTGTACATAGGGCTAGTTTT+TGG + chr7_3:36704232-36704251 Msa1102770:three_prime_UTR 35.0%
!! TTCAAAAGCAGTTTGGTTCT+TGG + chr7_3:36704276-36704295 Msa1102770:three_prime_UTR 35.0%
ACTGGTAATAGCAAGTCTGA+AGG + chr7_3:36703338-36703357 Msa1102770:CDS 40.0%
GTAATAGCAAGTCTGAAGGA+AGG + chr7_3:36703342-36703361 Msa1102770:CDS 40.0%
TCAGCATCACTGTCAGAATT+AGG - chr7_3:36703528-36703547 None:intergenic 40.0%
! TCTGAAATTTGCAGAGGTAG+AGG + chr7_3:36703653-36703672 Msa1102770:CDS 40.0%
CTGAAATTTGCAGAGGTAGA+GGG + chr7_3:36703654-36703673 Msa1102770:CDS 40.0%
GCTGTACGTAATCTCAAGAA+TGG + chr7_3:36703699-36703718 Msa1102770:CDS 40.0%
GAAGAACTAGAACTCTTTGC+AGG + chr7_3:36703725-36703744 Msa1102770:exon 40.0%
AAGCAACTGTCAACTTACCT+CGG + chr7_3:36704150-36704169 Msa1102770:three_prime_UTR 40.0%
ACTGGTAATAGCAAGTCTGA+AGG + chr7_3:36703338-36703357 Msa1102770:CDS 40.0%
GTAATAGCAAGTCTGAAGGA+AGG + chr7_3:36703342-36703361 Msa1102770:CDS 40.0%
TCAGCATCACTGTCAGAATT+AGG - chr7_3:36703528-36703547 None:intergenic 40.0%
! TCTGAAATTTGCAGAGGTAG+AGG + chr7_3:36703653-36703672 Msa1102770:CDS 40.0%
CTGAAATTTGCAGAGGTAGA+GGG + chr7_3:36703654-36703673 Msa1102770:CDS 40.0%
GCTGTACGTAATCTCAAGAA+TGG + chr7_3:36703699-36703718 Msa1102770:CDS 40.0%
GAAGAACTAGAACTCTTTGC+AGG + chr7_3:36703725-36703744 Msa1102770:exon 40.0%
AAGCAACTGTCAACTTACCT+CGG + chr7_3:36704150-36704169 Msa1102770:three_prime_UTR 40.0%
AAGGGAACAAGGGATTCAGA+TGG - chr7_3:36703389-36703408 None:intergenic 45.0%
TGATGCTGAACGCCTTACAA+AGG + chr7_3:36703539-36703558 Msa1102770:CDS 45.0%
! GACTGCACGGTCCAATTTTT+CGG + chr7_3:36703923-36703942 Msa1102770:three_prime_UTR 45.0%
!! GTCCAATTTTTCGGTCCGTA+CGG + chr7_3:36703932-36703951 Msa1102770:three_prime_UTR 45.0%
GTGCATTGTCCAGGTAACAA+GGG + chr7_3:36703954-36703973 Msa1102770:three_prime_UTR 45.0%
TGCATTGTCCAGGTAACAAG+GGG + chr7_3:36703955-36703974 Msa1102770:three_prime_UTR 45.0%
ACATCATACCCCTTGTTACC+TGG - chr7_3:36703966-36703985 None:intergenic 45.0%
AAGGGAACAAGGGATTCAGA+TGG - chr7_3:36703389-36703408 None:intergenic 45.0%
TGATGCTGAACGCCTTACAA+AGG + chr7_3:36703539-36703558 Msa1102770:CDS 45.0%
! GACTGCACGGTCCAATTTTT+CGG + chr7_3:36703923-36703942 Msa1102770:three_prime_UTR 45.0%
!! GTCCAATTTTTCGGTCCGTA+CGG + chr7_3:36703932-36703951 Msa1102770:three_prime_UTR 45.0%
GTGCATTGTCCAGGTAACAA+GGG + chr7_3:36703954-36703973 Msa1102770:three_prime_UTR 45.0%
TGCATTGTCCAGGTAACAAG+GGG + chr7_3:36703955-36703974 Msa1102770:three_prime_UTR 45.0%
ACATCATACCCCTTGTTACC+TGG - chr7_3:36703966-36703985 None:intergenic 45.0%
GAATGAAGTGGCGGTCCTAA+AGG + chr7_3:36703569-36703588 Msa1102770:CDS 50.0%
AAGTGGCGGTCCTAAAGGAA+AGG + chr7_3:36703574-36703593 Msa1102770:CDS 50.0%
GCAGTCAGCGCAGCAAATTT+CGG - chr7_3:36703909-36703928 None:intergenic 50.0%
!! AATTTGCTGCGCTGACTGCA+CGG + chr7_3:36703910-36703929 Msa1102770:three_prime_UTR 50.0%
CACCGTACGGACCGAAAAAT+TGG - chr7_3:36703937-36703956 None:intergenic 50.0%
TACCTGGACAATGCACCGTA+CGG - chr7_3:36703950-36703969 None:intergenic 50.0%
GGTGCATTGTCCAGGTAACA+AGG + chr7_3:36703953-36703972 Msa1102770:three_prime_UTR 50.0%
GACTACATGTGGCCCATATG+AGG - chr7_3:36703994-36704013 None:intergenic 50.0%
GAATGAAGTGGCGGTCCTAA+AGG + chr7_3:36703569-36703588 Msa1102770:CDS 50.0%
AAGTGGCGGTCCTAAAGGAA+AGG + chr7_3:36703574-36703593 Msa1102770:CDS 50.0%
GCAGTCAGCGCAGCAAATTT+CGG - chr7_3:36703909-36703928 None:intergenic 50.0%
!! AATTTGCTGCGCTGACTGCA+CGG + chr7_3:36703910-36703929 Msa1102770:three_prime_UTR 50.0%
CACCGTACGGACCGAAAAAT+TGG - chr7_3:36703937-36703956 None:intergenic 50.0%
TACCTGGACAATGCACCGTA+CGG - chr7_3:36703950-36703969 None:intergenic 50.0%
GGTGCATTGTCCAGGTAACA+AGG + chr7_3:36703953-36703972 Msa1102770:three_prime_UTR 50.0%
GACTACATGTGGCCCATATG+AGG - chr7_3:36703994-36704013 None:intergenic 50.0%
GGAATGGATGCTGCAAGCAC+TGG + chr7_3:36703320-36703339 Msa1102770:exon 55.0%
GGAATGGATGCTGCAAGCAC+TGG + chr7_3:36703320-36703339 Msa1102770:exon 55.0%
GTCCGTACGGTGCATTGTCC+AGG + chr7_3:36703945-36703964 Msa1102770:three_prime_UTR 60.0%
GTCCGTACGGTGCATTGTCC+AGG + chr7_3:36703945-36703964 Msa1102770:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 36703319 36704306 36703319 ID=Msa1102770;Name=Msa1102770
chr7_3 mRNA 36703319 36704306 36703319 ID=Msa1102770-mRNA-1;Parent=Msa1102770;Name=Msa1102770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=4|1|1|1|1|1|2|572|78
chr7_3 exon 36703319 36703363 36703319 ID=Msa1102770-mRNA-1:exon:7603;Parent=Msa1102770-mRNA-1
chr7_3 exon 36703539 36704306 36703539 ID=Msa1102770-mRNA-1:exon:7604;Parent=Msa1102770-mRNA-1
chr7_3 five_prime_UTR 36703319 36703322 36703319 ID=Msa1102770-mRNA-1:five_prime_utr;Parent=Msa1102770-mRNA-1
chr7_3 CDS 36703323 36703363 36703323 ID=Msa1102770-mRNA-1:cds;Parent=Msa1102770-mRNA-1
chr7_3 CDS 36703539 36703734 36703539 ID=Msa1102770-mRNA-1:cds;Parent=Msa1102770-mRNA-1
chr7_3 three_prime_UTR 36703735 36704306 36703735 ID=Msa1102770-mRNA-1:three_prime_utr;Parent=Msa1102770-mRNA-1
Gene Sequence

>Msa1102770

ATGGATGCTGCAAGCACTGGTAATAGCAAGTCTGAAGGAAGTGATGCTGAACGCCTTACAAAGGAATTATTGAATGAAGTGGCGGTCCTAAAGGAAAGGAACACGAATATGGAAACTGAACTGAAAGAAATGGAAGAAAGATATTCAGAGATTAGTCTGAAATTTGCAGAGGTAGAGGGAGAAAGACAACAGCTTGTTATGGCTGTACGTAATCTCAAGAATGGAAAGAAGAACTAG

Protein sequence

>Msa1102770

MDAASTGNSKSEGSDAERLTKELLNEVAVLKERNTNMETELKEMEERYSEISLKFAEVEGERQQLVMAVRNLKNGKKN*