AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094850 MtrunA17_Chr3g0119371 96.571 525 8 2 1 515 1 525 0.0 1059
Msa0094850 MtrunA17_Chr5g0439311 80.237 506 88 4 21 515 12 516 0.0 855
Msa0094850 MtrunA17_Chr8g0388051 60.515 466 172 3 40 495 28 491 0.0 605
Msa0094850 MtrunA17_Chr4g0038131 59.615 468 176 5 39 495 27 492 0.0 573
Msa0094850 MtrunA17_Chr5g0444721 69.859 355 101 2 147 495 210 564 0.0 528
Msa0094850 MtrunA17_Chr5g0444721 74.016 127 33 0 22 148 16 142 1.50e-59 206
Msa0094850 MtrunA17_Chr1g0164201 49.793 484 221 8 23 493 5 479 8.22e-160 462
Msa0094850 MtrunA17_Chr5g0397201 48.626 473 224 6 36 500 36 497 6.20e-151 441
Msa0094850 MtrunA17_Chr1g0195271 48.354 486 227 8 15 493 26 494 5.50e-148 433
Msa0094850 MtrunA17_Chr8g0391391 48.712 466 224 8 40 495 30 490 8.47e-148 432
Msa0094850 MtrunA17_Chr3g0119821 48.276 464 227 7 40 495 35 493 5.09e-147 431
Msa0094850 MtrunA17_Chr3g0145261 47.854 466 230 7 40 496 24 485 2.20e-145 426
Msa0094850 MtrunA17_Chr3g0086311 45.510 490 243 6 23 499 5 483 2.29e-139 410
Msa0094850 MtrunA17_Chr4g0018301 44.186 473 249 6 31 497 36 499 2.13e-137 406
Msa0094850 MtrunA17_Chr3g0080171 46.121 464 234 6 40 495 25 480 4.21e-136 402
Msa0094850 MtrunA17_Chr4g0018361 44.919 492 241 11 25 495 7 489 2.65e-131 390
Msa0094850 MtrunA17_Chr3g0142501 42.887 471 245 11 41 496 58 519 4.45e-119 360
Msa0094850 MtrunA17_Chr5g0397181 45.545 404 201 6 101 496 1 393 5.73e-118 353
Msa0094850 MtrunA17_Chr8g0372031 42.161 472 247 11 41 496 64 525 3.53e-114 348
Msa0094850 MtrunA17_Chr3g0136381 46.049 367 183 4 31 392 21 377 1.23e-109 333
Msa0094850 MtrunA17_Chr2g0291461 41.292 511 247 16 40 513 111 605 1.33e-100 315
Msa0094850 MtrunA17_Chr3g0120661 38.477 486 253 14 40 492 116 588 1.55e-90 289
Msa0094850 MtrunA17_Chr3g0126111 35.370 540 272 16 19 500 68 588 2.69e-90 288
Msa0094850 MtrunA17_Chr4g0018341 39.721 287 155 6 215 495 2 276 1.45e-65 214
Msa0094850 MtrunA17_Chr4g0018351 53.804 184 78 2 38 216 28 209 2.53e-59 195
Msa0094850 MtrunA17_Chr1g0164181 51.892 185 83 2 82 261 3 186 2.35e-48 170
Msa0094850 MtrunA17_Chr1g0164181 47.205 161 84 1 333 493 170 329 1.01e-47 168
Msa0094850 MtrunA17_Chr7g0269571 43.976 166 81 2 339 493 43 207 5.05e-42 150
Msa0094850 MtrunA17_Chr4g0022271 42.143 140 76 1 339 478 20 154 6.05e-33 123
Msa0094850 MtrunA17_Chr4g0072811 41.216 148 82 4 346 492 19 162 2.66e-28 111
Msa0094850 MtrunA17_Chr3g0136371 46.739 92 48 1 392 483 1 91 4.86e-23 94.0
Msa0094850 MtrunA17_Chr5g0397171 59.524 42 17 0 39 80 40 81 1.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094850 AT2G32990.1 73.428 493 111 3 22 494 11 503 0.0 758
Msa0094850 AT1G64390.1 60.944 466 170 3 40 495 25 488 0.0 598
Msa0094850 AT4G11050.3 59.743 467 176 3 40 496 26 490 0.0 587
Msa0094850 AT4G11050.1 59.743 467 176 3 40 496 26 490 0.0 587
Msa0094850 AT4G11050.2 59.743 467 176 3 40 496 26 490 0.0 585
Msa0094850 AT1G48930.1 57.296 466 187 4 39 494 29 492 0.0 524
Msa0094850 AT2G44550.1 50.731 479 217 6 25 493 18 487 8.68e-161 466
Msa0094850 AT2G44540.1 50.207 482 220 7 22 493 17 488 1.02e-156 456
Msa0094850 AT2G44560.1 50.625 480 218 7 24 493 18 488 7.05e-154 448
Msa0094850 AT2G44570.1 47.412 483 235 7 24 495 17 491 4.34e-152 444
Msa0094850 AT4G02290.1 49.892 463 220 7 40 495 52 509 3.74e-147 432
Msa0094850 AT1G02800.1 50.542 461 214 7 40 493 43 496 1.36e-146 430
Msa0094850 AT1G70710.1 46.764 479 243 7 24 495 12 485 5.57e-145 426
Msa0094850 AT4G23560.1 47.401 481 233 7 24 496 7 475 3.05e-144 423
Msa0094850 AT4G09740.1 47.401 481 233 7 24 496 7 475 3.19e-144 423
Msa0094850 AT4G39010.1 46.895 467 232 9 40 495 29 490 1.79e-142 419
Msa0094850 AT1G23210.1 46.868 463 234 7 40 495 28 485 5.56e-139 410
Msa0094850 AT3G43860.2 46.008 476 240 6 26 495 19 483 6.32e-138 407
Msa0094850 AT3G43860.1 46.008 476 240 6 26 495 19 483 6.32e-138 407
Msa0094850 AT1G22880.1 46.042 480 242 9 24 495 8 478 2.63e-136 403
Msa0094850 AT1G71380.1 45.248 484 243 11 24 495 5 478 9.74e-135 399
Msa0094850 AT4G39000.1 45.975 472 239 9 40 500 25 491 4.28e-132 393
Msa0094850 AT1G19940.2 46.753 462 226 9 40 490 48 500 6.29e-131 390
Msa0094850 AT1G19940.1 46.753 462 226 9 40 490 48 500 6.29e-131 390
Msa0094850 AT1G75680.1 47.046 457 222 9 41 486 58 505 1.82e-126 379
Msa0094850 AT4G38990.2 43.416 486 256 10 25 495 8 489 4.42e-123 370
Msa0094850 AT4G02290.2 47.264 402 200 7 101 495 1 397 7.48e-114 343
Msa0094850 AT1G22880.2 44.169 403 208 9 101 495 1 394 2.92e-108 328
Msa0094850 AT2G44570.2 44.557 395 200 7 24 407 17 403 5.14e-107 325
Msa0094850 AT4G39010.2 46.281 363 180 8 40 391 29 387 5.17e-105 320
Msa0094850 AT5G49720.1 41.837 490 234 16 40 492 108 583 2.33e-95 302
Msa0094850 AT1G19940.3 44.505 364 187 7 40 392 48 407 1.06e-92 289
Msa0094850 AT1G65610.1 36.089 496 272 15 40 503 116 598 1.32e-85 276
Msa0094850 AT4G24260.1 40.900 489 242 15 40 493 108 584 5.89e-85 275
Msa0094850 AT4G38990.1 42.938 354 170 7 25 371 8 336 2.14e-79 252
Msa0094850 AT1G22880.3 47.840 324 153 8 24 339 8 323 2.64e-79 251
Msa0094850 AT4G24260.3 38.660 388 196 13 40 392 108 488 5.63e-53 187
Msa0094850 AT4G24260.2 40.785 331 154 11 40 332 108 434 2.43e-51 182

Find 118 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACAAATTGATTACATTT+TGG 0.128319 1_2:-78270260 Msa0094850:CDS
TAAAATATCACTCATAAAAT+AGG 0.152287 1_2:+78269806 None:intergenic
AGAACCAAATCCTAATATTT+TGG 0.167708 1_2:-78270086 Msa0094850:CDS
CATACAACCAACGTGTTAAT+TGG 0.167826 1_2:-78273730 Msa0094850:CDS
AAATATTAGGATTTGGTTCT+TGG 0.200576 1_2:+78270089 None:intergenic
ATGTAATGGAAGCAATTAAA+TGG 0.203237 1_2:-78273424 Msa0094850:CDS
AACTCATGTTAAGTGGATTT+TGG 0.205279 1_2:+78270236 None:intergenic
AAATGTATTTGGTGCAAATT+TGG 0.228694 1_2:+78269650 None:intergenic
ACCTCTATGATGCACCCTTT+TGG 0.242199 1_2:+78270186 None:intergenic
ATGAGTTACTTAGTGGGATA+TGG 0.273448 1_2:-78270220 Msa0094850:CDS
GCAGGTGATCATGTGAAATT+TGG 0.274678 1_2:-78273533 Msa0094850:CDS
TACTTTGAAGCACAACGTTC+TGG 0.276345 1_2:-78273761 Msa0094850:CDS
ATTGTGCAGTTATTTGAGTT+TGG 0.280930 1_2:-78272140 Msa0094850:intron
TTGTGCAGTTATTTGAGTTT+GGG 0.294397 1_2:-78272139 Msa0094850:intron
CCAACCAAAATATTAGGATT+TGG 0.302553 1_2:+78270082 None:intergenic
ATATATAGAGAGTATTTAAA+AGG 0.306750 1_2:+78269886 None:intergenic
GTTAATTGGCGTCATCATTC+TGG 0.309546 1_2:-78273716 Msa0094850:CDS
AAAGCTCCAACCAAAATATT+AGG 0.310755 1_2:+78270076 None:intergenic
AAAATATCACTCATAAAATA+GGG 0.314310 1_2:+78269807 None:intergenic
CAGCTGCTTCCATTGTGTTT+AGG 0.320538 1_2:-78272888 Msa0094850:CDS
TCAAAATTGTCTAGATTATC+AGG 0.328331 1_2:+78270043 None:intergenic
AGAGAGAATAAAGGGTTCAT+AGG 0.328810 1_2:-78270145 Msa0094850:CDS
ATTTCTAATGCTCATACATT+TGG 0.331259 1_2:-78271972 Msa0094850:CDS
GCACACAAGGGTATGATAAT+TGG 0.347724 1_2:-78270120 Msa0094850:CDS
CAATTAACACGTTGGTTGTA+TGG 0.354636 1_2:+78273731 None:intergenic
CATGGAGTGCTATTGAGTTT+AGG 0.363527 1_2:-78273478 Msa0094850:CDS
GTGACAATGATGTTTAAATC+TGG 0.367337 1_2:+78273865 None:intergenic
GCTCATACATTTGGTGGTAT+TGG 0.372035 1_2:-78271963 Msa0094850:CDS
TAAATTTGTTAATATTATAG+TGG 0.388889 1_2:-78269746 Msa0094850:three_prime_UTR
TTTCAGGTGGATTTGGTTGG+AGG 0.401221 1_2:-78273566 Msa0094850:intron
TGTAATGGAAGCAATTAAAT+GGG 0.406228 1_2:-78273423 Msa0094850:CDS
CAAAAGATCAATTGCCAAGA+TGG 0.412945 1_2:-78270319 Msa0094850:CDS
GTATCATATAGAGAGAATAA+AGG 0.414088 1_2:-78270154 Msa0094850:CDS
CTGGACGTTGCCAACAATAA+TGG 0.415828 1_2:+78272998 None:intergenic
CTTGAGGTTGTCATGTCCTC+TGG 0.417866 1_2:+78272979 None:intergenic
GTCAAAATATTCTTGTTTGT+CGG 0.429086 1_2:+78272001 None:intergenic
AAGATAGATGAGAAGAATCC+AGG 0.433832 1_2:-78272946 Msa0094850:CDS
TTCAGGTGGATTTGGTTGGA+GGG 0.437613 1_2:-78273565 Msa0094850:intron
TCATGCAAAGAGGGAATAGA+AGG 0.439518 1_2:-78269943 Msa0094850:CDS
ATCCCAGCTGAATTCTGTTA+TGG 0.440268 1_2:+78271935 None:intergenic
ACTTTGAAGCACAACGTTCT+GGG 0.441438 1_2:-78273760 Msa0094850:CDS
GGGAAATATGATGGAAGTGT+TGG 0.451425 1_2:-78272104 Msa0094850:CDS
TATCATATAGAGAGAATAAA+GGG 0.456692 1_2:-78270153 Msa0094850:CDS
TCTAATGCTCATACATTTGG+TGG 0.457457 1_2:-78271969 Msa0094850:CDS
AGCTGGGATGTTAAGTATGC+TGG 0.465855 1_2:-78271921 Msa0094850:CDS
ATGGGCCTAAGTACCCCAAA+AGG 0.469761 1_2:-78270201 Msa0094850:CDS
ATACATTTGGTGGTATTGGT+TGG 0.472675 1_2:-78271959 Msa0094850:CDS
AGGCAAGAAATTGTTGAAGC+TGG 0.479140 1_2:-78273458 Msa0094850:CDS
ACTAAGTAACTCATGTTAAG+TGG 0.486492 1_2:+78270229 None:intergenic
GGTCCATAACAGAATTCAGC+TGG 0.486609 1_2:-78271938 Msa0094850:CDS
CAAAATTGAGAATTTCATCA+TGG 0.490347 1_2:+78270287 None:intergenic
ACTTAACATGAGTTACTTAG+TGG 0.491572 1_2:-78270227 Msa0094850:CDS
TGAGTTACTTAGTGGGATAT+GGG 0.492298 1_2:-78270219 Msa0094850:CDS
TTGGTTGGAGCTTTGGTAGG+AGG 0.493848 1_2:-78270067 Msa0094850:CDS
TGGAGAAACTGCTGCAGCTA+TGG 0.496286 1_2:-78272911 Msa0094850:CDS
CATCATTCTGGTCTTACAGA+TGG 0.500607 1_2:-78273704 Msa0094850:CDS
AATGTAATCAATTTGTGACT+TGG 0.504606 1_2:+78270264 None:intergenic
GAAGAATCCAGGTTCAGATC+TGG 0.506230 1_2:-78272935 Msa0094850:CDS
ATTGTTGAAGCTGGTGAACT+TGG 0.513050 1_2:-78273449 Msa0094850:CDS
CTTACAGATGGTTTAGAACA+AGG 0.516101 1_2:-78273692 Msa0094850:CDS
ATAATCAAAAGATTGTGTTA+TGG 0.516983 1_2:+78273811 None:intergenic
CATGGCCCACAATCCCATCT+TGG 0.517673 1_2:+78270305 None:intergenic
AGCTACTATGCGTCGGTGAG+TGG 0.518978 1_2:-78272071 Msa0094850:CDS
GAGAGAATAAAGGGTTCATA+GGG 0.518983 1_2:-78270144 Msa0094850:CDS
TTGCAAAATTCATGCAAAGA+GGG 0.519154 1_2:-78269952 Msa0094850:CDS
AAAAGATCAATTGCCAAGAT+GGG 0.520703 1_2:-78270318 Msa0094850:CDS
AATTGCCAAGATGGGATTGT+GGG 0.521792 1_2:-78270310 Msa0094850:CDS
ATATAATACTGCACCATTAG+TGG 0.523912 1_2:-78269981 Msa0094850:CDS
AAATACAGAGGGAAATATGA+TGG 0.525154 1_2:-78272113 Msa0094850:CDS
GAGACACAGACCATTATTGT+TGG 0.526224 1_2:-78273008 Msa0094850:CDS
CAAGGGTATGATAATTGGTA+TGG 0.527762 1_2:-78270115 Msa0094850:CDS
TGTGCAGTTATTTGAGTTTG+GGG 0.529149 1_2:-78272138 Msa0094850:intron
TGTGAAATTTGGTTTACCAA+TGG 0.529922 1_2:-78273522 Msa0094850:CDS
AAAATATTCTTGTTTGTCGG+TGG 0.547238 1_2:+78272004 None:intergenic
AAAATTCAAGAAAGAAAGTG+AGG 0.550203 1_2:+78273987 None:intergenic
TTTGCAAAATTCATGCAAAG+AGG 0.550554 1_2:-78269953 Msa0094850:CDS
GATACATGGATGAGTTATTG+TGG 0.552659 1_2:-78272049 Msa0094850:CDS
TATAATACTGCACCATTAGT+GGG 0.560164 1_2:-78269980 Msa0094850:CDS
GTTGGAGGGTACTATGATGC+AGG 0.563279 1_2:-78273551 Msa0094850:CDS
TGACAATGATGTTTAAATCT+GGG 0.565379 1_2:+78273866 None:intergenic
TGCGTCGGTGAGTGGATACA+TGG 0.568122 1_2:-78272063 Msa0094850:CDS
AAATATCACTCATAAAATAG+GGG 0.568765 1_2:+78269808 None:intergenic
GGGTTCATAGGGTGCACACA+AGG 0.574402 1_2:-78270133 Msa0094850:CDS
TCTCCAGCCAGATCTGAACC+TGG 0.578429 1_2:+78272928 None:intergenic
ATACATGGATGAGTTATTGT+GGG 0.579757 1_2:-78272048 Msa0094850:CDS
TTACTGTCACAATGTTGTCA+TGG 0.583673 1_2:-78273496 Msa0094850:CDS
TACAGATGGTTTAGAACAAG+GGG 0.583836 1_2:-78273690 Msa0094850:intron
GCAAAGAGGGAATAGAAGGT+TGG 0.590189 1_2:-78269939 Msa0094850:CDS
TATCTTAAAAGCTTGTCTTG+AGG 0.590517 1_2:+78272963 None:intergenic
AGTTATTGTGGGGAGCTATG+TGG 0.591433 1_2:-78272037 Msa0094850:CDS
AATCCAGGTTCAGATCTGGC+TGG 0.593866 1_2:-78272931 Msa0094850:CDS
CTTAACATGAGTTACTTAGT+GGG 0.597597 1_2:-78270226 Msa0094850:CDS
ATTCTCTCTATATGATACAA+TGG 0.597953 1_2:+78270159 None:intergenic
CAATTGCCAAGATGGGATTG+TGG 0.600603 1_2:-78270311 Msa0094850:CDS
ATTGTGACAGTAAATGCCAT+TGG 0.602158 1_2:+78273506 None:intergenic
TGGTGAACTTGGTCATGTAA+TGG 0.602665 1_2:-78273438 Msa0094850:CDS
TGGGCCTAAGTACCCCAAAA+GGG 0.608177 1_2:-78270200 Msa0094850:CDS
CTTACATAGAGTAATCCAGC+TGG 0.611840 1_2:+78270421 None:intergenic
TTACAGATGGTTTAGAACAA+GGG 0.612255 1_2:-78273691 Msa0094850:CDS
AATATCACTCATAAAATAGG+GGG 0.615663 1_2:+78269809 None:intergenic
AATGTGGAAAGAACACCAGC+TGG 0.616199 1_2:-78270436 Msa0094850:CDS
CCCAAAAGGGTGCATCATAG+AGG 0.625621 1_2:-78270187 Msa0094850:CDS
AGTTTGGGGACAAATACAGA+GGG 0.630720 1_2:-78272124 Msa0094850:CDS
TTACTACTACCTGCTGAGCA+TGG 0.641231 1_2:+78272830 None:intergenic
GTCCATAACAGAATTCAGCT+GGG 0.643895 1_2:-78271937 Msa0094850:CDS
GATGACGCCAATTAACACGT+TGG 0.651812 1_2:+78273723 None:intergenic
TTATTGTTGGCAACGTCCAG+AGG 0.652974 1_2:-78272995 Msa0094850:CDS
AGTGAAGAGCTACTATGCGT+CGG 0.655502 1_2:-78272078 Msa0094850:CDS
AAAAGTAGCTGAGAATAATG+TGG 0.661774 1_2:+78272856 None:intergenic
GAGTTTGGGGACAAATACAG+AGG 0.667296 1_2:-78272125 Msa0094850:CDS
GAACAATTATGTGCAAACTG+AGG 0.668349 1_2:-78270011 Msa0094850:CDS
GTAATGGAAGCAATTAAATG+GGG 0.669304 1_2:-78273422 Msa0094850:CDS
AAACAATGGCAGCAGCAATG+TGG 0.670730 1_2:-78270452 Msa0094850:CDS
GGTTCATAGGGTGCACACAA+GGG 0.675227 1_2:-78270132 Msa0094850:CDS
AAATTCAAGAAAGAAAGTGA+GGG 0.678743 1_2:+78273988 None:intergenic
TTGAAGCACAACGTTCTGGG+AGG 0.691689 1_2:-78273757 Msa0094850:CDS
GATTACTCTATGTAAGACAG+TGG 0.704386 1_2:-78270414 Msa0094850:CDS
TACATGGATGAGTTATTGTG+GGG 0.766782 1_2:-78272047 Msa0094850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATAATTTATTATGTT+TGG - chr1_2:78270951-78270970 Msa0094850:intron 10.0%
!! TATTAAAATATGTAAAACAA+GGG - chr1_2:78271029-78271048 Msa0094850:intron 10.0%
!!! TACTAATATTTTTACTTAAT+TGG + chr1_2:78271453-78271472 None:intergenic 10.0%
!!! TAAATTTGTTAATATTATAG+TGG - chr1_2:78273948-78273967 Msa0094850:five_prime_UTR 10.0%
!!! AAAGTTGAGATTTTTATTTT+TGG - chr1_2:78270095-78270114 Msa0094850:CDS 15.0%
!!! AAGTTGAGATTTTTATTTTT+GGG - chr1_2:78270096-78270115 Msa0094850:CDS 15.0%
!! GTATTAAAATATGTAAAACA+AGG - chr1_2:78271028-78271047 Msa0094850:intron 15.0%
!!! TTTTGATTGTGTTTTTTTTT+TGG - chr1_2:78271134-78271153 Msa0094850:intron 15.0%
!! TAAAATACAAACAAAACAAA+AGG - chr1_2:78271819-78271838 Msa0094850:intron 15.0%
!! AAAATACAAACAAAACAAAA+GGG - chr1_2:78271820-78271839 Msa0094850:intron 15.0%
!!! ATATATAGAGAGTATTTAAA+AGG + chr1_2:78273811-78273830 None:intergenic 15.0%
!! AAAATATCACTCATAAAATA+GGG + chr1_2:78273890-78273909 None:intergenic 15.0%
!! TAAAATATCACTCATAAAAT+AGG + chr1_2:78273891-78273910 None:intergenic 15.0%
!!! AAAAAAAGTTGGTACTTTTT+AGG + chr1_2:78269742-78269761 None:intergenic 20.0%
!!! AAAAGTACCAACTTTTTTTT+AGG - chr1_2:78269743-78269762 Msa0094850:three_prime_UTR 20.0%
!! ATAATCAAAAGATTGTGTTA+TGG + chr1_2:78269886-78269905 None:intergenic 20.0%
!!! TTTCATTTTCTTGATTTTGA+TGG - chr1_2:78270048-78270067 Msa0094850:CDS 20.0%
!!! GAAACAAAATTCTGAAATTA+AGG - chr1_2:78270641-78270660 Msa0094850:intron 20.0%
!!! GAAATTAAGGTTTTTTACTT+AGG - chr1_2:78270654-78270673 Msa0094850:intron 20.0%
!!! AAGATTGTAAATAGCTATTT+TGG - chr1_2:78271053-78271072 Msa0094850:intron 20.0%
!!! ACTACAGTAAATAGTTATTT+TGG + chr1_2:78271310-78271329 None:intergenic 20.0%
!!! TACTACACTATCAATTTTAA+AGG - chr1_2:78271383-78271402 Msa0094850:intron 20.0%
!!! TTCAAACATGTCAATTTTAT+AGG - chr1_2:78271897-78271916 Msa0094850:intron 20.0%
!!! TTCTAGTATTTTATTTGTGT+TGG - chr1_2:78271968-78271987 Msa0094850:CDS 20.0%
!! TGAAGTCAAAAATAAAATGA+TGG - chr1_2:78272050-78272069 Msa0094850:CDS 20.0%
!! GAAGTCAAAAATAAAATGAT+GGG - chr1_2:78272051-78272070 Msa0094850:CDS 20.0%
!!! ACTTTTGAAACTAAAGTAAA+AGG + chr1_2:78272100-78272119 None:intergenic 20.0%
!!! TATCATTTGATTTGATTTGA+TGG - chr1_2:78272124-78272143 Msa0094850:CDS 20.0%
!! TAGACTATAGCTAATATAAA+TGG - chr1_2:78272323-78272342 Msa0094850:intron 20.0%
!! TTTAGAAGAAGAAAATTTCA+GGG - chr1_2:78272759-78272778 Msa0094850:intron 20.0%
!! AAAAATAACAAATGGATCAA+GGG + chr1_2:78272867-78272886 None:intergenic 20.0%
!! AAAAAATAACAAATGGATCA+AGG + chr1_2:78272868-78272887 None:intergenic 20.0%
!!! TTGATCCATTTGTTATTTTT+TGG - chr1_2:78272867-78272886 Msa0094850:CDS 20.0%
!! ACTATCCAAAAAATAACAAA+TGG + chr1_2:78272875-78272894 None:intergenic 20.0%
!!! ATTTGTTATTTTTTGGATAG+TGG - chr1_2:78272874-78272893 Msa0094850:CDS 20.0%
!!! TTTGTTATTTTTTGGATAGT+GGG - chr1_2:78272875-78272894 Msa0094850:CDS 20.0%
!!! ATTTGTTCTTTTAGAAATGT+GGG + chr1_2:78272974-78272993 None:intergenic 20.0%
!!! TATTTGTTCTTTTAGAAATG+TGG + chr1_2:78272975-78272994 None:intergenic 20.0%
!! TCTAAAAGAACAAATATTTC+TGG - chr1_2:78272979-78272998 Msa0094850:CDS 20.0%
!!! TACTAGTAAACTTTTACATA+AGG + chr1_2:78273079-78273098 None:intergenic 20.0%
!!! TCACAAATTGATTACATTTT+GGG - chr1_2:78273435-78273454 Msa0094850:CDS 20.0%
!! TATCATATAGAGAGAATAAA+GGG - chr1_2:78273541-78273560 Msa0094850:CDS 20.0%
!! AAATATCACTCATAAAATAG+GGG + chr1_2:78273889-78273908 None:intergenic 20.0%
! AAATTCAAGAAAGAAAGTGA+GGG + chr1_2:78269709-78269728 None:intergenic 25.0%
! AAAATTCAAGAAAGAAAGTG+AGG + chr1_2:78269710-78269729 None:intergenic 25.0%
! TGACAATGATGTTTAAATCT+GGG + chr1_2:78269831-78269850 None:intergenic 25.0%
!! ATGTAATGGAAGCAATTAAA+TGG - chr1_2:78270270-78270289 Msa0094850:CDS 25.0%
!! TGTAATGGAAGCAATTAAAT+GGG - chr1_2:78270271-78270290 Msa0094850:CDS 25.0%
!!! ATTAAGGTTTTTTACTTAGG+TGG - chr1_2:78270657-78270676 Msa0094850:intron 25.0%
!!! TTAAGGTTTTTTACTTAGGT+GGG - chr1_2:78270658-78270677 Msa0094850:intron 25.0%
!!! ATTTGTTTTCCTAAACACAA+TGG + chr1_2:78270818-78270837 None:intergenic 25.0%
! TACTTGTCTCTTAAAGTTAA+AGG + chr1_2:78271011-78271030 None:intergenic 25.0%
! TGACTAACAAAACATATAAC+AGG + chr1_2:78271188-78271207 None:intergenic 25.0%
!!! TTGGAATTTTGACATATTCA+TGG - chr1_2:78271252-78271271 Msa0094850:intron 25.0%
!!! TCAATTTTAAAGGCAAATAG+TGG - chr1_2:78271393-78271412 Msa0094850:intron 25.0%
!!! CAATTTTAAAGGCAAATAGT+GGG - chr1_2:78271394-78271413 Msa0094850:intron 25.0%
!!! AATTTTAAAGGCAAATAGTG+GGG - chr1_2:78271395-78271414 Msa0094850:intron 25.0%
!! GTCAAAATATTCTTGTTTGT+CGG + chr1_2:78271696-78271715 None:intergenic 25.0%
! ATTTCTAATGCTCATACATT+TGG - chr1_2:78271722-78271741 Msa0094850:intron 25.0%
! AGACAAAAAAGAGTGATTAA+AGG + chr1_2:78271849-78271868 None:intergenic 25.0%
! ATCTAAGGGATATTGTTAAT+AGG - chr1_2:78272153-78272172 Msa0094850:intron 25.0%
!! TTAGCTATAGTCTATTCTTT+TGG + chr1_2:78272317-78272336 None:intergenic 25.0%
!!! ACACTTTTTATGTTTTCTTC+AGG - chr1_2:78272628-78272647 Msa0094850:intron 25.0%
!!! CACTTTTTATGTTTTCTTCA+GGG - chr1_2:78272629-78272648 Msa0094850:intron 25.0%
! AGAATAGTCATTGGTAAATA+AGG + chr1_2:78272728-78272747 None:intergenic 25.0%
! TGCATATATAGAATAGTCAT+TGG + chr1_2:78272737-78272756 None:intergenic 25.0%
! GTTTAGAAGAAGAAAATTTC+AGG - chr1_2:78272758-78272777 Msa0094850:intron 25.0%
! TTTCTTAAAGCCCAAAATAA+AGG + chr1_2:78272901-78272920 None:intergenic 25.0%
!! ATGTACATTTGAAGTGATAT+TGG - chr1_2:78273036-78273055 Msa0094850:intron 25.0%
!! TGTACATTTGAAGTGATATT+GGG - chr1_2:78273037-78273056 Msa0094850:intron 25.0%
!! GTAACTTTTGTAGTTTTTGA+TGG - chr1_2:78273137-78273156 Msa0094850:intron 25.0%
! CAAAATTGAGAATTTCATCA+TGG + chr1_2:78273410-78273429 None:intergenic 25.0%
! AATGTAATCAATTTGTGACT+TGG + chr1_2:78273433-78273452 None:intergenic 25.0%
!! GTCACAAATTGATTACATTT+TGG - chr1_2:78273434-78273453 Msa0094850:CDS 25.0%
! ATTCTCTCTATATGATACAA+TGG + chr1_2:78273538-78273557 None:intergenic 25.0%
! GTATCATATAGAGAGAATAA+AGG - chr1_2:78273540-78273559 Msa0094850:CDS 25.0%
!!! AAATATTAGGATTTGGTTCT+TGG + chr1_2:78273608-78273627 None:intergenic 25.0%
!! AGAACCAAATCCTAATATTT+TGG - chr1_2:78273608-78273627 Msa0094850:intron 25.0%
! TCAAAATTGTCTAGATTATC+AGG + chr1_2:78273654-78273673 None:intergenic 25.0%
!! TGATAATCTAGACAATTTTG+AGG - chr1_2:78273653-78273672 Msa0094850:intron 25.0%
! AATATCACTCATAAAATAGG+GGG + chr1_2:78273888-78273907 None:intergenic 25.0%
!!! AGTACCAACTTTTTTTTAGG+AGG - chr1_2:78269746-78269765 Msa0094850:three_prime_UTR 30.0%
!!! GTACCAACTTTTTTTTAGGA+GGG - chr1_2:78269747-78269766 Msa0094850:three_prime_UTR 30.0%
GTGACAATGATGTTTAAATC+TGG + chr1_2:78269832-78269851 None:intergenic 30.0%
! TTACAGATGGTTTAGAACAA+GGG - chr1_2:78270003-78270022 Msa0094850:CDS 30.0%
!!! TTTTGGGTTTGTGTTTTTTC+AGG - chr1_2:78270112-78270131 Msa0094850:CDS 30.0%
! TGTGAAATTTGGTTTACCAA+TGG - chr1_2:78270172-78270191 Msa0094850:CDS 30.0%
! GTAATGGAAGCAATTAAATG+GGG - chr1_2:78270272-78270291 Msa0094850:CDS 30.0%
TCTCAAATTATTAGCAGTGT+GGG + chr1_2:78270415-78270434 None:intergenic 30.0%
TTCTCAAATTATTAGCAGTG+TGG + chr1_2:78270416-78270435 None:intergenic 30.0%
! TTTCCAATTTTTGAACTTCC+TGG - chr1_2:78270593-78270612 Msa0094850:intron 30.0%
TATCTTAAAAGCTTGTCTTG+AGG + chr1_2:78270734-78270753 None:intergenic 30.0%
AAAAGTAGCTGAGAATAATG+TGG + chr1_2:78270841-78270860 None:intergenic 30.0%
GTGAATATAGCACAATTTAG+AGG + chr1_2:78270890-78270909 None:intergenic 30.0%
TTGTGCTATATTCACTATAG+TGG - chr1_2:78270895-78270914 Msa0094850:intron 30.0%
! AAGGTGCTTAAAAATGAAGT+GGG + chr1_2:78270992-78271011 None:intergenic 30.0%
!! AAAGGTGCTTAAAAATGAAG+TGG + chr1_2:78270993-78271012 None:intergenic 30.0%
CTCTTTGATTAGTAATCTCA+TGG + chr1_2:78271218-78271237 None:intergenic 30.0%
ATTATGCATTCACACTTATC+AGG + chr1_2:78271347-78271366 None:intergenic 30.0%
! ATTGTGCAGTTATTTGAGTT+TGG - chr1_2:78271554-78271573 Msa0094850:intron 30.0%
! TTGTGCAGTTATTTGAGTTT+GGG - chr1_2:78271555-78271574 Msa0094850:intron 30.0%
AAATACAGAGGGAAATATGA+TGG - chr1_2:78271581-78271600 Msa0094850:intron 30.0%
ATACATGGATGAGTTATTGT+GGG - chr1_2:78271646-78271665 Msa0094850:intron 30.0%
! AAAATATTCTTGTTTGTCGG+TGG + chr1_2:78271693-78271712 None:intergenic 30.0%
TTACCTTTGATGCTAAAACT+TGG + chr1_2:78271802-78271821 None:intergenic 30.0%
!!! TGTTGGTTTTCCTTTTTCAA+TGG - chr1_2:78271985-78272004 Msa0094850:CDS 30.0%
GAGAAATAAGCCATTGAAAA+AGG + chr1_2:78271998-78272017 None:intergenic 30.0%
! ATGTTAGTAAAGCATTATGC+AGG + chr1_2:78272031-78272050 None:intergenic 30.0%
! GATGGGTTTAAGACTTAATT+TGG - chr1_2:78272068-78272087 Msa0094850:CDS 30.0%
ATTTGATGGAGCAATATCTA+AGG - chr1_2:78272138-78272157 Msa0094850:intron 30.0%
TTTGATGGAGCAATATCTAA+GGG - chr1_2:78272139-78272158 Msa0094850:intron 30.0%
AGGGATATTGTTAATAGGAT+AGG - chr1_2:78272158-78272177 Msa0094850:intron 30.0%
CTATCACAGTTCAATTAAAG+TGG - chr1_2:78272237-78272256 Msa0094850:intron 30.0%
ACCATTGAAACTTCAACATT+TGG + chr1_2:78272281-78272300 None:intergenic 30.0%
TAATGCACAATGATTGATAG+TGG - chr1_2:78272802-78272821 Msa0094850:intron 30.0%
!! TATTTCTGGAAATGTACTTC+TGG - chr1_2:78272993-78273012 Msa0094850:CDS 30.0%
TCATGTCTCAACAAAAACAA+TGG - chr1_2:78273228-78273247 Msa0094850:intron 30.0%
!! TGATCTTTTGATTCTCACTT+TGG + chr1_2:78273365-78273384 None:intergenic 30.0%
AAAAGATCAATTGCCAAGAT+GGG - chr1_2:78273376-78273395 Msa0094850:intron 30.0%
!! AACTCATGTTAAGTGGATTT+TGG + chr1_2:78273461-78273480 None:intergenic 30.0%
ACTAAGTAACTCATGTTAAG+TGG + chr1_2:78273468-78273487 None:intergenic 30.0%
ACTTAACATGAGTTACTTAG+TGG - chr1_2:78273467-78273486 Msa0094850:CDS 30.0%
CTTAACATGAGTTACTTAGT+GGG - chr1_2:78273468-78273487 Msa0094850:CDS 30.0%
CCAACCAAAATATTAGGATT+TGG + chr1_2:78273615-78273634 None:intergenic 30.0%
!!! CCAAATCCTAATATTTTGGT+TGG - chr1_2:78273612-78273631 Msa0094850:intron 30.0%
AAAGCTCCAACCAAAATATT+AGG + chr1_2:78273621-78273640 None:intergenic 30.0%
!!! TAATATTTTGGTTGGAGCTT+TGG - chr1_2:78273620-78273639 Msa0094850:intron 30.0%
!! TAGACAATTTTGAGGATCAA+AGG - chr1_2:78273661-78273680 Msa0094850:intron 30.0%
ATATAATACTGCACCATTAG+TGG - chr1_2:78273713-78273732 Msa0094850:CDS 30.0%
TATAATACTGCACCATTAGT+GGG - chr1_2:78273714-78273733 Msa0094850:CDS 30.0%
TTTGCAAAATTCATGCAAAG+AGG - chr1_2:78273741-78273760 Msa0094850:CDS 30.0%
TTGCAAAATTCATGCAAAGA+GGG - chr1_2:78273742-78273761 Msa0094850:CDS 30.0%
CTTCCCTCCTAAAAAAAAGT+TGG + chr1_2:78269753-78269772 None:intergenic 35.0%
! CAATTAACACGTTGGTTGTA+TGG + chr1_2:78269966-78269985 None:intergenic 35.0%
CATACAACCAACGTGTTAAT+TGG - chr1_2:78269964-78269983 Msa0094850:CDS 35.0%
! CTTACAGATGGTTTAGAACA+AGG - chr1_2:78270002-78270021 Msa0094850:CDS 35.0%
! TACAGATGGTTTAGAACAAG+GGG - chr1_2:78270004-78270023 Msa0094850:CDS 35.0%
!!! TGTGTTTTTTCAGGTGGATT+TGG - chr1_2:78270121-78270140 Msa0094850:CDS 35.0%
!!! TTTTTTCAGGTGGATTTGGT+TGG - chr1_2:78270125-78270144 Msa0094850:CDS 35.0%
ATTGTGACAGTAAATGCCAT+TGG + chr1_2:78270191-78270210 None:intergenic 35.0%
TTACTGTCACAATGTTGTCA+TGG - chr1_2:78270198-78270217 Msa0094850:CDS 35.0%
!! ATAGCTTGTGAGACATTTTG+AGG - chr1_2:78270518-78270537 Msa0094850:CDS 35.0%
CAACCAGGAAGTTCAAAAAT+TGG + chr1_2:78270599-78270618 None:intergenic 35.0%
CATTAATCATCACATCAACC+AGG + chr1_2:78270614-78270633 None:intergenic 35.0%
! CTGGTTGATGTGATGATTAA+TGG - chr1_2:78270612-78270631 Msa0094850:intron 35.0%
!!! TTTTTTACTTAGGTGGGTGA+TGG - chr1_2:78270664-78270683 Msa0094850:intron 35.0%
AAGATAGATGAGAAGAATCC+AGG - chr1_2:78270748-78270767 Msa0094850:intron 35.0%
! AAGAGACTCGTGAATGTTTT+TGG - chr1_2:78271233-78271252 Msa0094850:intron 35.0%
! GACATATTCATGGACTATAG+TGG - chr1_2:78271262-78271281 Msa0094850:intron 35.0%
CACTTATCAGGAACATTACT+TGG + chr1_2:78271335-78271354 None:intergenic 35.0%
! TGTGCAGTTATTTGAGTTTG+GGG - chr1_2:78271556-78271575 Msa0094850:intron 35.0%
GATACATGGATGAGTTATTG+TGG - chr1_2:78271645-78271664 Msa0094850:intron 35.0%
TACATGGATGAGTTATTGTG+GGG - chr1_2:78271647-78271666 Msa0094850:intron 35.0%
TCTAATGCTCATACATTTGG+TGG - chr1_2:78271725-78271744 Msa0094850:intron 35.0%
!! ATACATTTGGTGGTATTGGT+TGG - chr1_2:78271735-78271754 Msa0094850:intron 35.0%
!! TCTCCAAGTTTTAGCATCAA+AGG - chr1_2:78271796-78271815 Msa0094850:intron 35.0%
TTTGAATTAAGCCAACCTAG+AGG + chr1_2:78271883-78271902 None:intergenic 35.0%
AGTAAAAGCAAAAAGCAGCA+TGG + chr1_2:78271924-78271943 None:intergenic 35.0%
!!! TGCTGCTTTTTGCTTTTACT+TGG - chr1_2:78271924-78271943 Msa0094850:CDS 35.0%
ACAGTTCAATTAAAGTGGTC+TGG - chr1_2:78272242-78272261 Msa0094850:intron 35.0%
ATTAAAGTGGTCTGGCTATA+TGG - chr1_2:78272250-78272269 Msa0094850:intron 35.0%
GCCAAATGTTGAAGTTTCAA+TGG - chr1_2:78272277-78272296 Msa0094850:intron 35.0%
! GCTATAGTCTATTCTTTTGG+AGG + chr1_2:78272314-78272333 None:intergenic 35.0%
!! ACATGCATTGACTGTCAAAA+TGG - chr1_2:78272489-78272508 Msa0094850:intron 35.0%
TCAATCAGATAAGCAATCAG+TGG + chr1_2:78272527-78272546 None:intergenic 35.0%
AGTGTGTATTCCATGAATGT+GGG + chr1_2:78272613-78272632 None:intergenic 35.0%
AAGTGTGTATTCCATGAATG+TGG + chr1_2:78272614-78272633 None:intergenic 35.0%
AGGGTTTGCAATAAATCAGT+TGG - chr1_2:78272648-78272667 Msa0094850:intron 35.0%
! AAAACTGCTAGAGCACATTT+TGG - chr1_2:78272680-78272699 Msa0094850:intron 35.0%
!!! TAGAGCACATTTTGGTTACT+TGG - chr1_2:78272688-78272707 Msa0094850:intron 35.0%
GATTACTCTATGTAAGACAG+TGG - chr1_2:78273280-78273299 Msa0094850:intron 35.0%
CAAAAGATCAATTGCCAAGA+TGG - chr1_2:78273375-78273394 Msa0094850:intron 35.0%
ATGAGTTACTTAGTGGGATA+TGG - chr1_2:78273474-78273493 Msa0094850:CDS 35.0%
TGAGTTACTTAGTGGGATAT+GGG - chr1_2:78273475-78273494 Msa0094850:CDS 35.0%
AGAGAGAATAAAGGGTTCAT+AGG - chr1_2:78273549-78273568 Msa0094850:CDS 35.0%
GAGAGAATAAAGGGTTCATA+GGG - chr1_2:78273550-78273569 Msa0094850:CDS 35.0%
! CAAGGGTATGATAATTGGTA+TGG - chr1_2:78273579-78273598 Msa0094850:intron 35.0%
GAACAATTATGTGCAAACTG+AGG - chr1_2:78273683-78273702 Msa0094850:intron 35.0%
TTTGCAAAAACTCCCACTAA+TGG + chr1_2:78273729-78273748 None:intergenic 35.0%
!! TACTTTGAAGCACAACGTTC+TGG - chr1_2:78269933-78269952 Msa0094850:CDS 40.0%
!! ACTTTGAAGCACAACGTTCT+GGG - chr1_2:78269934-78269953 Msa0094850:CDS 40.0%
GTTAATTGGCGTCATCATTC+TGG - chr1_2:78269978-78269997 Msa0094850:CDS 40.0%
!! CATCATTCTGGTCTTACAGA+TGG - chr1_2:78269990-78270009 Msa0094850:CDS 40.0%
!!! TGGGTTTGTGTTTTTTCAGG+TGG - chr1_2:78270115-78270134 Msa0094850:CDS 40.0%
GCAGGTGATCATGTGAAATT+TGG - chr1_2:78270161-78270180 Msa0094850:CDS 40.0%
! CATGGAGTGCTATTGAGTTT+AGG - chr1_2:78270216-78270235 Msa0094850:CDS 40.0%
AGGCAAGAAATTGTTGAAGC+TGG - chr1_2:78270236-78270255 Msa0094850:CDS 40.0%
ATTGTTGAAGCTGGTGAACT+TGG - chr1_2:78270245-78270264 Msa0094850:CDS 40.0%
TGGTGAACTTGGTCATGTAA+TGG - chr1_2:78270256-78270275 Msa0094850:CDS 40.0%
ATACTAGCCCAAATGTGTTG+TGG - chr1_2:78270318-78270337 Msa0094850:CDS 40.0%
TACTAGCCCAAATGTGTTGT+GGG - chr1_2:78270319-78270338 Msa0094850:CDS 40.0%
GATTAGACATGTCACAGTGT+CGG + chr1_2:78270479-78270498 None:intergenic 40.0%
GAGACACAGACCATTATTGT+TGG - chr1_2:78270686-78270705 Msa0094850:intron 40.0%
ACTATAGTGGCACTAGTGTT+TGG - chr1_2:78270908-78270927 Msa0094850:intron 40.0%
GGCATTGTCTCGCATATTTA+AGG - chr1_2:78271283-78271302 Msa0094850:intron 40.0%
AGTTTGGGGACAAATACAGA+GGG - chr1_2:78271570-78271589 Msa0094850:intron 40.0%
! GGGAAATATGATGGAAGTGT+TGG - chr1_2:78271590-78271609 Msa0094850:intron 40.0%
! GCTCATACATTTGGTGGTAT+TGG - chr1_2:78271731-78271750 Msa0094850:intron 40.0%
GTCCATAACAGAATTCAGCT+GGG - chr1_2:78271757-78271776 Msa0094850:intron 40.0%
ATCCCAGCTGAATTCTGTTA+TGG + chr1_2:78271762-78271781 None:intergenic 40.0%
! TTCAATGGCTTATTTCTCGC+TGG - chr1_2:78272000-78272019 Msa0094850:CDS 40.0%
TAGACTGCATCAATTGCACA+TGG + chr1_2:78272220-78272239 None:intergenic 40.0%
! TTGCCTCATGATGAGTTGAA+GGG + chr1_2:78272570-78272589 None:intergenic 40.0%
CATGAGGCAAGCTATTACTA+TGG - chr1_2:78272580-78272599 Msa0094850:intron 40.0%
GTGTGTATTCCATGAATGTG+GGG + chr1_2:78272612-78272631 None:intergenic 40.0%
! GTGCTCTAGCAGTTTTACAA+TGG + chr1_2:78272676-78272695 None:intergenic 40.0%
!! GCACAATGATTGATAGTGGA+TGG - chr1_2:78272806-78272825 Msa0094850:intron 40.0%
TAACAAATGGATCAAGGGCA+AGG + chr1_2:78272862-78272881 None:intergenic 40.0%
!!! TGGATAGTGGGCCTTTATTT+TGG - chr1_2:78272887-78272906 Msa0094850:CDS 40.0%
!!! GGATAGTGGGCCTTTATTTT+GGG - chr1_2:78272888-78272907 Msa0094850:CDS 40.0%
! GAAAGTTGATCCCTTTGCAT+AGG + chr1_2:78272945-78272964 None:intergenic 40.0%
!! CTTTTAGAAATGTGGGAGTG+TGG + chr1_2:78272967-78272986 None:intergenic 40.0%
CTTACATAGAGTAATCCAGC+TGG + chr1_2:78273276-78273295 None:intergenic 40.0%
AATTGCCAAGATGGGATTGT+GGG - chr1_2:78273384-78273403 Msa0094850:intron 40.0%
! GCACACAAGGGTATGATAAT+TGG - chr1_2:78273574-78273593 Msa0094850:intron 40.0%
!!! ATTTTGGTTGGAGCTTTGGT+AGG - chr1_2:78273624-78273643 Msa0094850:intron 40.0%
TCATGCAAAGAGGGAATAGA+AGG - chr1_2:78273751-78273770 Msa0094850:CDS 40.0%
GATGACGCCAATTAACACGT+TGG + chr1_2:78269974-78269993 None:intergenic 45.0%
! TTTCAGGTGGATTTGGTTGG+AGG - chr1_2:78270128-78270147 Msa0094850:CDS 45.0%
! TTCAGGTGGATTTGGTTGGA+GGG - chr1_2:78270129-78270148 Msa0094850:CDS 45.0%
ACTGTGACATGTCTAATCCG+AGG - chr1_2:78270481-78270500 Msa0094850:CDS 45.0%
GTCTCACAAGCTATGAAGCA+CGG + chr1_2:78270512-78270531 None:intergenic 45.0%
CTGGACGTTGCCAACAATAA+TGG + chr1_2:78270699-78270718 None:intergenic 45.0%
TTATTGTTGGCAACGTCCAG+AGG - chr1_2:78270699-78270718 Msa0094850:intron 45.0%
GAAGAATCCAGGTTCAGATC+TGG - chr1_2:78270759-78270778 Msa0094850:intron 45.0%
CAGCTGCTTCCATTGTGTTT+AGG - chr1_2:78270806-78270825 Msa0094850:intron 45.0%
TTACTACTACCTGCTGAGCA+TGG + chr1_2:78270867-78270886 None:intergenic 45.0%
AGTGGCACTAGTGTTTGGTT+TGG - chr1_2:78270913-78270932 Msa0094850:intron 45.0%
GTGGGGTATGAAGTATGAAC+TGG - chr1_2:78271412-78271431 Msa0094850:intron 45.0%
GAGTTTGGGGACAAATACAG+AGG - chr1_2:78271569-78271588 Msa0094850:intron 45.0%
AGTGAAGAGCTACTATGCGT+CGG - chr1_2:78271616-78271635 Msa0094850:intron 45.0%
AGTTATTGTGGGGAGCTATG+TGG - chr1_2:78271657-78271676 Msa0094850:intron 45.0%
GGTCCATAACAGAATTCAGC+TGG - chr1_2:78271756-78271775 Msa0094850:intron 45.0%
AGCTGGGATGTTAAGTATGC+TGG - chr1_2:78271773-78271792 Msa0094850:intron 45.0%
GTCTCATTTCACGTTCCTCT+AGG - chr1_2:78271865-78271884 Msa0094850:intron 45.0%
CATTTCACGTTCCTCTAGGT+TGG - chr1_2:78271869-78271888 Msa0094850:intron 45.0%
CAACCCTTCAACTCATCATG+AGG - chr1_2:78272564-78272583 Msa0094850:intron 45.0%
! CTTGCCTCATGATGAGTTGA+AGG + chr1_2:78272571-78272590 None:intergenic 45.0%
TGTGCCTTCTACCTATGCAA+AGG - chr1_2:78272931-78272950 Msa0094850:CDS 45.0%
GTGCCTTCTACCTATGCAAA+GGG - chr1_2:78272932-78272951 Msa0094850:CDS 45.0%
GATCCCTTTGCATAGGTAGA+AGG + chr1_2:78272938-78272957 None:intergenic 45.0%
AAACAATGGCAGCAGCAATG+TGG - chr1_2:78273242-78273261 Msa0094850:intron 45.0%
AATGTGGAAAGAACACCAGC+TGG - chr1_2:78273258-78273277 Msa0094850:intron 45.0%
CAATTGCCAAGATGGGATTG+TGG - chr1_2:78273383-78273402 Msa0094850:intron 45.0%
! CTCTATGATGCACCCTTTTG+GGG + chr1_2:78273509-78273528 None:intergenic 45.0%
! CCTCTATGATGCACCCTTTT+GGG + chr1_2:78273510-78273529 None:intergenic 45.0%
! ACCTCTATGATGCACCCTTT+TGG + chr1_2:78273511-78273530 None:intergenic 45.0%
GCAAAGAGGGAATAGAAGGT+TGG - chr1_2:78273755-78273774 Msa0094850:CDS 45.0%
! TTGAAGCACAACGTTCTGGG+AGG - chr1_2:78269937-78269956 Msa0094850:CDS 50.0%
!! GTTGGAGGGTACTATGATGC+AGG - chr1_2:78270143-78270162 Msa0094850:CDS 50.0%
CCTCTGCCCACAACACATTT+GGG + chr1_2:78270328-78270347 None:intergenic 50.0%
ACCTCTGCCCACAACACATT+TGG + chr1_2:78270329-78270348 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr1_2:78270501-78270520 None:intergenic 50.0%
CTTGAGGTTGTCATGTCCTC+TGG + chr1_2:78270718-78270737 None:intergenic 50.0%
AATCCAGGTTCAGATCTGGC+TGG - chr1_2:78270763-78270782 Msa0094850:intron 50.0%
TGGAGAAACTGCTGCAGCTA+TGG - chr1_2:78270783-78270802 Msa0094850:intron 50.0%
! ACTTTTGCACCATGCTCAGC+AGG - chr1_2:78270855-78270874 Msa0094850:intron 50.0%
!! GGCACTAGTGTTTGGTTTGG+TGG - chr1_2:78270916-78270935 Msa0094850:intron 50.0%
ATGGGCCTAAGTACCCCAAA+AGG - chr1_2:78273493-78273512 Msa0094850:CDS 50.0%
TGGGCCTAAGTACCCCAAAA+GGG - chr1_2:78273494-78273513 Msa0094850:CDS 50.0%
!!! TGCACCCTTTTGGGGTACTT+AGG + chr1_2:78273501-78273520 None:intergenic 50.0%
! CCCAAAAGGGTGCATCATAG+AGG - chr1_2:78273507-78273526 Msa0094850:CDS 50.0%
GGTTCATAGGGTGCACACAA+GGG - chr1_2:78273562-78273581 Msa0094850:CDS 50.0%
! TTGGTTGGAGCTTTGGTAGG+AGG - chr1_2:78273627-78273646 Msa0094850:intron 50.0%
CCCAAATGTGTTGTGGGCAG+AGG - chr1_2:78270325-78270344 Msa0094850:CDS 55.0%
TCTCCAGCCAGATCTGAACC+TGG + chr1_2:78270769-78270788 None:intergenic 55.0%
! AGCTACTATGCGTCGGTGAG+TGG - chr1_2:78271623-78271642 Msa0094850:intron 55.0%
! TGCGTCGGTGAGTGGATACA+TGG - chr1_2:78271631-78271650 Msa0094850:intron 55.0%
TGGTGTGTGCCCCACATTCA+TGG - chr1_2:78272600-78272619 Msa0094850:intron 55.0%
CATGGCCCACAATCCCATCT+TGG + chr1_2:78273392-78273411 None:intergenic 55.0%
GGGTTCATAGGGTGCACACA+AGG - chr1_2:78273561-78273580 Msa0094850:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78269663 78274053 78269663 ID=Msa0094850;Name=Msa0094850
chr1_2 mRNA 78269663 78274053 78269663 ID=Msa0094850-mRNA-1;Parent=Msa0094850;Name=Msa0094850-mRNA-1;_AED=0.23;_eAED=0.23;_QI=120|0.6|0.66|1|0.6|0.5|6|217|515
chr1_2 exon 78269663 78269799 78269663 ID=Msa0094850-mRNA-1:exon:27882;Parent=Msa0094850-mRNA-1
chr1_2 exon 78269821 78270566 78269821 ID=Msa0094850-mRNA-1:exon:27881;Parent=Msa0094850-mRNA-1
chr1_2 exon 78271914 78272153 78271914 ID=Msa0094850-mRNA-1:exon:27880;Parent=Msa0094850-mRNA-1
chr1_2 exon 78272840 78273040 78272840 ID=Msa0094850-mRNA-1:exon:27879;Parent=Msa0094850-mRNA-1
chr1_2 exon 78273385 78273582 78273385 ID=Msa0094850-mRNA-1:exon:27878;Parent=Msa0094850-mRNA-1
chr1_2 exon 78273691 78274053 78273691 ID=Msa0094850-mRNA-1:exon:27877;Parent=Msa0094850-mRNA-1
chr1_2 five_prime_UTR 78273934 78274053 78273934 ID=Msa0094850-mRNA-1:five_prime_utr;Parent=Msa0094850-mRNA-1
chr1_2 CDS 78273691 78273933 78273691 ID=Msa0094850-mRNA-1:cds;Parent=Msa0094850-mRNA-1
chr1_2 CDS 78273385 78273582 78273385 ID=Msa0094850-mRNA-1:cds;Parent=Msa0094850-mRNA-1
chr1_2 CDS 78272840 78273040 78272840 ID=Msa0094850-mRNA-1:cds;Parent=Msa0094850-mRNA-1
chr1_2 CDS 78271914 78272153 78271914 ID=Msa0094850-mRNA-1:cds;Parent=Msa0094850-mRNA-1
chr1_2 CDS 78269901 78270566 78269901 ID=Msa0094850-mRNA-1:cds;Parent=Msa0094850-mRNA-1
chr1_2 three_prime_UTR 78269821 78269900 78269821 ID=Msa0094850-mRNA-1:three_prime_utr;Parent=Msa0094850-mRNA-1
chr1_2 three_prime_UTR 78269663 78269799 78269663 ID=Msa0094850-mRNA-1:three_prime_utr;Parent=Msa0094850-mRNA-1
Gene Sequence

>Msa0094850

ATGAAGAATGAGAGACAACAACAACATCATAGAGCTTCTAAAATTCCCAGATTTAAACATCATTGTCACATTTTTCTCTTCATTTTGTTCACTCTTTTTTCCATAACACAATCTTTTGATTATGCTGATGCACTTTCAAAAAGTCTTCTTTACTTTGAAGCACAACGTTCTGGGAGGTTACCATACAACCAACGTGTTAATTGGCGTCATCATTCTGGTCTTACAGATGGTTTAGAACAAGGGGTGGATTTGGTTGGAGGGTACTATGATGCAGGTGATCATGTGAAATTTGGTTTACCAATGGCATTTACTGTCACAATGTTGTCATGGAGTGCTATTGAGTTTAGGCAAGAAATTGTTGAAGCTGGTGAACTTGGTCATGTAATGGAAGCAATTAAATGGGGAACTGATTATTTCATCAAAGCTCATACTAGCCCAAATGTGGGTGATGGAGACACAGACCATTATTGTTGGCAACGTCCAGAGGACATGACAACCTCAAGACAAGCTTTTAAGATAGATGAGAAGAATCCAGGTTCAGATCTGGCTGGAGAAACTGCTGCAGCTATGGCAGCTGCTTCCATTGTGTTTAGGAAAACAAATCCACATTATTCTCAGCTACTTTTGCACCATGCTCAGCAGTTATTTGAGTTTGGGGACAAATACAGAGGGAAATATGATGGAAGTGTTGGAGTAGTGAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTATTGTGGGGAGCTATGTGGTTGTACAAAGCCACCGACAAACAAGAATATTTTGACTACATTATTTCTAATGCTCATACATTTGGTGGTATTGGTTGGTCCATAACAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTCCAATTTTTGATGGATGCAAAACACAATAAGCATGCTGATTTACTAGAACAGTACAAATCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACAATGGCAGCAGCAATGTGGAAAGAACACCAGCTGGATTACTCTATGTAAGACAGTGGAACAACATGCAATATGTTTCTACAGCAGCATTTCTACTCTCTGTTTACTCTGATTTTCTCCAAAGTGAGAATCAAAAGATCAATTGCCAAGATGGGATTGTGGGCCATGATGAAATTCTCAATTTTGCCAAGTCACAAATTGATTACATTTTGGGCCAAAATCCACTTAACATGAGTTACTTAGTGGGATATGGGCCTAAGTACCCCAAAAGGGTGCATCATAGAGGTGCATCCATTGTATCATATAGAGAGAATAAAGGGTTCATAGGGTGCACACAAGGGTATGATAATTGGTATGGTGTCCAAGAACCAAATCCTAATATTTTGGTTGGAGCTTTGGTAGGAGGACCTGATAATCTAGACAATTTTGAGGATCAAAGGAACAATTATGTGCAAACTGAGGCTTGCACATATAATACTGCACCATTAGTGGGAGTTTTTGCAAAATTCATGCAAAGAGGGAATAGAAGGTTGGTTCATGATTCTGATTCACTTTTAGTTGCTTCCTTTTAA

Protein sequence

>Msa0094850

MKNERQQQHHRASKIPRFKHHCHIFLFILFTLFSITQSFDYADALSKSLLYFEAQRSGRLPYNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSAIEFRQEIVEAGELGHVMEAIKWGTDYFIKAHTSPNVGDGDTDHYCWQRPEDMTTSRQAFKIDEKNPGSDLAGETAAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDGSVGVVKSYYASVSGYMDELLWGAMWLYKATDKQEYFDYIISNAHTFGGIGWSITEFSWDVKYAGLQFLMDAKHNKHADLLEQYKSKAEYYICSCLNKNNGSSNVERTPAGLLYVRQWNNMQYVSTAAFLLSVYSDFLQSENQKINCQDGIVGHDEILNFAKSQIDYILGQNPLNMSYLVGYGPKYPKRVHHRGASIVSYRENKGFIGCTQGYDNWYGVQEPNPNILVGALVGGPDNLDNFEDQRNNYVQTEACTYNTAPLVGVFAKFMQRGNRRLVHDSDSLLVASF*