Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077140 | XP_003590760.1 | 98.510 | 671 | 10 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077140 | sp|Q9SS87|SEOB_ARATH | 31.224 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 1.37e-96 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077140 | E2FKJ6 | 98.510 | 671 | 10 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0077140 | 0.822905 | 1.844422e-53 | -8.615850e-47 |
| Msa0012060 | Msa0077140 | 0.821097 | 4.838359e-53 | -8.615850e-47 |
| Msa0017510 | Msa0077140 | 0.813689 | 2.254214e-51 | -8.615850e-47 |
| Msa0029880 | Msa0077140 | 0.951096 | 4.191344e-109 | -8.615850e-47 |
| Msa0029890 | Msa0077140 | 0.955220 | 5.009429e-113 | -8.615850e-47 |
| Msa0029900 | Msa0077140 | 0.863802 | 1.918874e-64 | -8.615850e-47 |
| Msa0029910 | Msa0077140 | 0.811636 | 6.340295e-51 | -8.615850e-47 |
| Msa0077120 | Msa0077140 | 0.810100 | 1.363215e-50 | -8.615850e-47 |
| Msa0077130 | Msa0077140 | 0.855155 | 7.626282e-62 | -8.615850e-47 |
| Msa0077140 | Msa0125090 | 0.900950 | 4.384246e-78 | -8.615850e-47 |
| Msa0077140 | Msa0125100 | 0.928343 | 3.303122e-92 | -8.615850e-47 |
| Msa0077140 | Msa0125110 | 0.832804 | 7.668587e-56 | -8.615850e-47 |
| Msa0077140 | Msa0157290 | 0.813062 | 3.095354e-51 | -8.615850e-47 |
| Msa0077140 | Msa0169860 | 0.935574 | 6.850645e-97 | -8.615850e-47 |
| Msa0077140 | Msa0169870 | 0.976894 | 1.047820e-142 | -8.615850e-47 |
| Msa0077140 | Msa0169920 | 0.827964 | 1.169226e-54 | -8.615850e-47 |
| Msa0077140 | Msa0170090 | 0.858759 | 6.605782e-63 | -8.615850e-47 |
| Msa0077140 | Msa0188830 | 0.802007 | 6.880471e-49 | -8.615850e-47 |
| Msa0077140 | Msa0213040 | 0.800175 | 1.630648e-48 | -8.615850e-47 |
| Msa0077140 | Msa0243100 | 0.813277 | 2.776780e-51 | -8.615850e-47 |
| Msa0077140 | Msa0272730 | 0.802487 | 5.479956e-49 | -8.615850e-47 |
| Msa0077140 | Msa0287650 | 0.807237 | 5.576499e-50 | -8.615850e-47 |
| Msa0077140 | Msa0315530 | 0.800809 | 1.210837e-48 | -8.615850e-47 |
| Msa0077140 | Msa0362680 | 0.821226 | 4.517894e-53 | -8.615850e-47 |
| Msa0077140 | Msa0395790 | 0.809937 | 1.477900e-50 | -8.615850e-47 |
| Msa0077140 | Msa0439970 | 0.804494 | 2.103367e-49 | -8.615850e-47 |
| Msa0077140 | Msa0483650 | 0.819778 | 9.711276e-53 | -8.615850e-47 |
| Msa0077140 | Msa0494670 | 0.814888 | 1.224982e-51 | -8.615850e-47 |
| Msa0077140 | Msa0512230 | 0.819068 | 1.410245e-52 | -8.615850e-47 |
| Msa0077140 | Msa0523460 | 0.820717 | 5.917030e-53 | -8.615850e-47 |
| Msa0077140 | Msa0536220 | 0.801758 | 7.740901e-49 | -8.615850e-47 |
| Msa0077140 | Msa0602250 | 0.803277 | 3.763789e-49 | -8.615850e-47 |
| Msa0077140 | Msa0648880 | 0.829010 | 6.536854e-55 | -8.615850e-47 |
| Msa0077140 | Msa0657970 | 0.804212 | 2.407786e-49 | -8.615850e-47 |
| Msa0077140 | Msa0664850 | 0.811377 | 7.216564e-51 | -8.615850e-47 |
| Msa0077140 | Msa0682620 | 0.810219 | 1.284943e-50 | -8.615850e-47 |
| Msa0077140 | Msa0688070 | 0.807885 | 4.061498e-50 | -8.615850e-47 |
| Msa0077140 | Msa0688770 | 0.808411 | 3.138180e-50 | -8.615850e-47 |
| Msa0077140 | Msa0691380 | 0.802523 | 5.387196e-49 | -8.615850e-47 |
| Msa0077140 | Msa0702350 | 0.818307 | 2.098321e-52 | -8.615850e-47 |
| Msa0077140 | Msa0702680 | 0.814893 | 1.221700e-51 | -8.615850e-47 |
| Msa0077140 | Msa0868020 | 0.804186 | 2.437202e-49 | -8.615850e-47 |
| Msa0077140 | Msa0880140 | 0.808630 | 2.818314e-50 | -8.615850e-47 |
| Msa0077140 | Msa0883060 | 0.832671 | 8.277649e-56 | -8.615850e-47 |
| Msa0077140 | Msa0909120 | 0.803348 | 3.639092e-49 | -8.615850e-47 |
| Msa0077140 | Msa0909140 | 0.809559 | 1.782449e-50 | -8.615850e-47 |
| Msa0077140 | Msa0910430 | 0.816067 | 6.693803e-52 | -8.615850e-47 |
| Msa0077140 | Msa0948290 | 0.802362 | 5.815226e-49 | -8.615850e-47 |
| Msa0077140 | Msa0964840 | 0.803207 | 3.891623e-49 | -8.615850e-47 |
| Msa0077140 | Msa1075220 | -0.800744 | 1.248394e-48 | -8.615850e-47 |
| Msa0077140 | Msa1082500 | 0.810605 | 1.060961e-50 | -8.615850e-47 |
| Msa0077140 | Msa1098560 | 0.802948 | 4.403015e-49 | -8.615850e-47 |
| Msa0077140 | Msa1162550 | -0.818037 | 2.415315e-52 | -8.615850e-47 |
| Msa0077140 | Msa1224480 | 0.810262 | 1.258143e-50 | -8.615850e-47 |
| Msa0077140 | Msa1242220 | 0.840490 | 8.426788e-58 | -8.615850e-47 |
| Msa0077140 | Msa1242230 | 0.801285 | 9.678996e-49 | -8.615850e-47 |
| Msa0077140 | Msa1271300 | 0.818881 | 1.555368e-52 | -8.615850e-47 |
| Msa0077140 | Msa1283860 | 0.813856 | 2.070912e-51 | -8.615850e-47 |
| Msa0077140 | Msa1287440 | 0.813036 | 3.135720e-51 | -8.615850e-47 |
| Msa0077140 | Msa1318240 | 0.806441 | 8.211881e-50 | -8.615850e-47 |
| Msa0077140 | Msa1322860 | 0.820684 | 6.022185e-53 | -8.615850e-47 |
| Msa0077140 | Msa1322890 | 0.846972 | 1.552361e-59 | -8.615850e-47 |
| Msa0077140 | Msa1327050 | 0.808643 | 2.799906e-50 | -8.615850e-47 |
| Msa0077140 | Msa1392260 | 0.808157 | 3.555771e-50 | -8.615850e-47 |
| Msa0077140 | Msa1423880 | 0.800997 | 1.108349e-48 | -8.615850e-47 |
| Msa0077140 | Msa1438250 | 0.814832 | 1.260488e-51 | -8.615850e-47 |
| Msa0077140 | Msa1464160 | 0.866225 | 3.331505e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077140 | MtrunA17_Chr1g0186841 | 98.510 | 671 | 10 | 0 | 1 | 671 | 1 | 671 | 0.0 | 1359 |
| Msa0077140 | MtrunA17_Chr1g0186851 | 59.431 | 668 | 263 | 6 | 9 | 671 | 5 | 669 | 0.0 | 816 |
| Msa0077140 | MtrunA17_Chr1g0186861 | 58.615 | 650 | 262 | 6 | 18 | 663 | 17 | 663 | 0.0 | 768 |
| Msa0077140 | MtrunA17_Chr1g0187041 | 55.838 | 668 | 287 | 6 | 1 | 664 | 1 | 664 | 0.0 | 735 |
| Msa0077140 | MtrunA17_Chr1g0186911 | 58.333 | 564 | 230 | 5 | 102 | 663 | 1 | 561 | 0.0 | 661 |
| Msa0077140 | MtrunA17_Chr1g0165791 | 37.967 | 669 | 390 | 11 | 20 | 670 | 24 | 685 | 1.02e-149 | 450 |
| Msa0077140 | MtrunA17_Chr7g0226571 | 31.944 | 720 | 424 | 17 | 1 | 663 | 1 | 711 | 1.59e-107 | 342 |
| Msa0077140 | MtrunA17_Chr1g0187001 | 33.383 | 677 | 390 | 18 | 13 | 667 | 3 | 640 | 2.65e-104 | 331 |
| Msa0077140 | MtrunA17_Chr1g0186981 | 33.671 | 692 | 388 | 22 | 6 | 668 | 19 | 668 | 1.36e-102 | 327 |
| Msa0077140 | MtrunA17_Chr8g0381301 | 32.235 | 698 | 404 | 20 | 23 | 662 | 17 | 703 | 3.09e-101 | 325 |
| Msa0077140 | MtrunA17_Chr3g0116601 | 31.466 | 696 | 412 | 18 | 19 | 661 | 21 | 704 | 7.48e-100 | 321 |
| Msa0077140 | MtrunA17_Chr1g0186991 | 33.036 | 672 | 384 | 22 | 21 | 662 | 31 | 666 | 6.16e-97 | 312 |
| Msa0077140 | MtrunA17_Chr1g0186901 | 62.069 | 87 | 31 | 1 | 18 | 102 | 17 | 103 | 1.81e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077140 | AT3G01680.1 | 31.224 | 711 | 406 | 21 | 23 | 664 | 34 | 730 | 1.39e-97 | 316 |
| Msa0077140 | AT3G01670.1 | 26.375 | 709 | 430 | 21 | 23 | 661 | 134 | 820 | 1.54e-59 | 214 |
| Msa0077140 | AT3G01670.2 | 26.301 | 711 | 428 | 22 | 23 | 661 | 158 | 844 | 2.01e-59 | 214 |
| Msa0077140 | AT1G67790.1 | 23.209 | 698 | 432 | 27 | 24 | 659 | 9 | 664 | 3.03e-35 | 142 |
Find 136 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACACAACACCATTATTT+TGG | 0.058940 | 1_2:-53700872 | None:intergenic |
| ATTTCATCATCCATTGTAAA+TGG | 0.156346 | 1_2:-53699552 | None:intergenic |
| TCTGCATTTGCACTTGAATT+TGG | 0.183170 | 1_2:+53696472 | Msa0077140:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.193634 | 1_2:+53696737 | Msa0077140:CDS |
| AAAACCTCGTAAGTCGATTT+TGG | 0.196977 | 1_2:+53700272 | Msa0077140:CDS |
| CACTTGAATTTGGTGAATTC+TGG | 0.203329 | 1_2:+53696482 | Msa0077140:CDS |
| TTCCATTTGATCAAGTCTTA+TGG | 0.239151 | 1_2:+53699516 | Msa0077140:CDS |
| CATTGAATTTATACTTGAAT+TGG | 0.266351 | 1_2:+53696654 | Msa0077140:CDS |
| TTGTGTCATACCTATCATTA+AGG | 0.284079 | 1_2:-53696681 | None:intergenic |
| CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1_2:+53700568 | Msa0077140:CDS |
| TGGTCATCAGACATGGTTAA+TGG | 0.290518 | 1_2:-53695340 | None:intergenic |
| TTACTGGGTCTTGTGGTCTT+TGG | 0.296308 | 1_2:+53700716 | Msa0077140:three_prime_UTR |
| CATGTCTGATGACCAGATTT+TGG | 0.311388 | 1_2:+53695348 | Msa0077140:CDS |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1_2:+53696699 | Msa0077140:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1_2:+53696612 | Msa0077140:CDS |
| ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1_2:+53699298 | Msa0077140:CDS |
| CAATGCAAATGCAAAACATT+AGG | 0.320284 | 1_2:+53700675 | Msa0077140:CDS |
| AATTGGATTACCTTAATGAT+AGG | 0.331280 | 1_2:+53696671 | Msa0077140:CDS |
| CACAGTGGTGAACTAAAATT+CGG | 0.342006 | 1_2:-53695613 | None:intergenic |
| CGAAAATTTACTTACCCATA+TGG | 0.346721 | 1_2:-53699637 | None:intergenic |
| AATGCAAATGCAAAACATTA+GGG | 0.352870 | 1_2:+53700676 | Msa0077140:CDS |
| AATGTGAGGTGGAATAAAAT+TGG | 0.354807 | 1_2:-53701109 | None:intergenic |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | 1_2:-53695638 | None:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1_2:-53696539 | None:intergenic |
| GTGGTCTTTGGTTCGAGACT+TGG | 0.370433 | 1_2:+53700728 | Msa0077140:three_prime_UTR |
| GTGGTGTAGTCTTGAAGCTT+TGG | 0.376393 | 1_2:+53700913 | Msa0077140:three_prime_UTR |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1_2:-53697508 | None:intergenic |
| GTGGGACATTCAGAACCTTT+TGG | 0.379546 | 1_2:+53700803 | Msa0077140:three_prime_UTR |
| AGTAAATTTGATCCAAAATC+TGG | 0.381034 | 1_2:-53695360 | None:intergenic |
| TGCTGCTATTGTTACTCAGT+TGG | 0.382885 | 1_2:+53696774 | Msa0077140:CDS |
| TCTTTGTAAACCCAAAATAA+TGG | 0.402445 | 1_2:+53700861 | Msa0077140:three_prime_UTR |
| GTGAACTAAAATTCGGGATA+AGG | 0.403542 | 1_2:-53695606 | None:intergenic |
| GTTCCTCAGCTGCTTTATGA+TGG | 0.405362 | 1_2:+53697584 | Msa0077140:CDS |
| TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1_2:+53699427 | Msa0077140:CDS |
| TTTCATCATCCATTGTAAAT+GGG | 0.417223 | 1_2:-53699551 | None:intergenic |
| CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1_2:+53700458 | Msa0077140:CDS |
| GATCAAGTCTTATGGAATCA+AGG | 0.421741 | 1_2:+53699524 | Msa0077140:CDS |
| TTAACCACAACATTTCCATA+TGG | 0.422661 | 1_2:+53699622 | Msa0077140:CDS |
| GAATTCAGAAGGACAGGAAC+TGG | 0.428024 | 1_2:+53699577 | Msa0077140:CDS |
| TCCATGGTGCTAGGACAATC+AGG | 0.433171 | 1_2:-53700616 | None:intergenic |
| GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1_2:-53700577 | None:intergenic |
| GGTCATCAGACATGGTTAAT+GGG | 0.438624 | 1_2:-53695339 | None:intergenic |
| CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1_2:-53700567 | None:intergenic |
| ATAGTCCAGTAAACATCAAC+AGG | 0.440292 | 1_2:-53696742 | None:intergenic |
| GTGTGAAAGCTTGTTCAGTA+TGG | 0.441244 | 1_2:-53696416 | None:intergenic |
| TTCCATAAGACTTGATCAAA+TGG | 0.441990 | 1_2:-53699518 | None:intergenic |
| CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1_2:+53699428 | Msa0077140:CDS |
| GGATTCCAATCGTCGAAGAA+TGG | 0.446974 | 1_2:+53699319 | Msa0077140:CDS |
| TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1_2:-53695572 | None:intergenic |
| TCTCAATCTCACCTGCTGAT+AGG | 0.450343 | 1_2:-53695312 | None:intergenic |
| TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | 1_2:-53696382 | None:intergenic |
| CTGCAGGCTTTGCTAGGATC+GGG | 0.454271 | 1_2:-53696567 | None:intergenic |
| AACTGGATTGTATCTGTTGT+AGG | 0.459816 | 1_2:+53699594 | Msa0077140:CDS |
| AAGCAAGAACTTTCGCACTA+TGG | 0.467506 | 1_2:+53696944 | Msa0077140:CDS |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1_2:-53696573 | None:intergenic |
| CTTAAGAGTACCTTTGATGA+TGG | 0.470957 | 1_2:-53695284 | None:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | 1_2:-53696379 | None:intergenic |
| AGCAGCTGAGGAACACCCTT+GGG | 0.476113 | 1_2:-53697575 | None:intergenic |
| AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1_2:+53700481 | Msa0077140:CDS |
| ACGGTCTGTCGTCAACAAAT+AGG | 0.482946 | 1_2:+53697010 | Msa0077140:CDS |
| ACAAGCTTTCACACTATGAC+TGG | 0.487294 | 1_2:+53696425 | Msa0077140:CDS |
| TAACCACAACATTTCCATAT+GGG | 0.489037 | 1_2:+53699623 | Msa0077140:CDS |
| TCGTTCCATTCTTCGACGAT+TGG | 0.491649 | 1_2:-53699324 | None:intergenic |
| GTTGGATCCATTCTTTGTCA+TGG | 0.491940 | 1_2:-53700156 | None:intergenic |
| TTGCATACTTAGTGAACTGT+TGG | 0.493419 | 1_2:-53700174 | None:intergenic |
| TGAACTAAAATTCGGGATAA+GGG | 0.496533 | 1_2:-53695605 | None:intergenic |
| ATGAAAATCTCCATGGTGCT+AGG | 0.497376 | 1_2:-53700625 | None:intergenic |
| ACAGGGTACCAAAGTAAGCT+TGG | 0.502353 | 1_2:+53695564 | Msa0077140:intron |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | 1_2:+53695639 | Msa0077140:CDS |
| GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1_2:+53700480 | Msa0077140:CDS |
| AAATAAGAATTCAGAAGGAC+AGG | 0.505393 | 1_2:+53699571 | Msa0077140:CDS |
| ACGGCGGCCATGACAAAGAA+TGG | 0.505835 | 1_2:+53700149 | Msa0077140:CDS |
| CATTTGCATTGCTCTTGTTG+TGG | 0.511127 | 1_2:-53700663 | None:intergenic |
| AAAGATACGAACCGTAGTCT+TGG | 0.515674 | 1_2:-53697612 | None:intergenic |
| CAGAATGTCGAAAACATAGC+TGG | 0.516066 | 1_2:+53699402 | Msa0077140:CDS |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1_2:-53696606 | None:intergenic |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.522772 | 1_2:-53696568 | None:intergenic |
| CAAGGCTTTCCCATTTACAA+TGG | 0.524969 | 1_2:+53699542 | Msa0077140:CDS |
| TCTGTTGTGTTGAGTGGTCA+TGG | 0.529738 | 1_2:+53700418 | Msa0077140:CDS |
| TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1_2:+53699471 | Msa0077140:CDS |
| TTGTGTTGCACCTTTCCTTG+AGG | 0.539203 | 1_2:-53699486 | None:intergenic |
| CTTAAGACTCTCCTATCAGC+AGG | 0.541497 | 1_2:+53695301 | Msa0077140:CDS |
| TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1_2:+53699227 | Msa0077140:CDS |
| AGCACCACTGTTATTTCAGT+GGG | 0.543302 | 1_2:-53697536 | None:intergenic |
| GAAAATGTGCTTGTTCTGCT+CGG | 0.546825 | 1_2:-53700122 | None:intergenic |
| ATGAGTGACACGAGCAACAC+TGG | 0.552524 | 1_2:-53700533 | None:intergenic |
| GTCAACATAGAAGAGTTCAA+TGG | 0.556338 | 1_2:-53700239 | None:intergenic |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1_2:+53695465 | Msa0077140:CDS |
| TGGCGTGGAACATAACCAAA+AGG | 0.564380 | 1_2:-53700818 | None:intergenic |
| CAACAGATGGTCCTTTGCTA+AGG | 0.567238 | 1_2:-53700402 | None:intergenic |
| AACTTCTTGTGTCACTACAT+CGG | 0.569484 | 1_2:-53700338 | None:intergenic |
| AAGCAGCTGAGGAACACCCT+TGG | 0.571000 | 1_2:-53697576 | None:intergenic |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | 1_2:-53695447 | None:intergenic |
| ATATGTACACTTGTGTGAAG+AGG | 0.574765 | 1_2:+53701032 | Msa0077140:three_prime_UTR |
| ACAGTGGTGAACTAAAATTC+GGG | 0.577031 | 1_2:-53695612 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1_2:-53696712 | None:intergenic |
| CAAAATCTGGTCATCAGACA+TGG | 0.578319 | 1_2:-53695347 | None:intergenic |
| TGATGAAATAAGAATTCAGA+AGG | 0.583273 | 1_2:+53699566 | Msa0077140:CDS |
| TTACCCATATGGAAATGTTG+TGG | 0.584500 | 1_2:-53699626 | None:intergenic |
| AAGAGTACCTTTGATGATGG+TGG | 0.585987 | 1_2:-53695281 | None:intergenic |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1_2:-53695383 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1_2:-53696532 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | 1_2:-53695432 | None:intergenic |
| TGACCACTCAACACAACAGA+TGG | 0.592856 | 1_2:-53700415 | None:intergenic |
| CAAGCTTTCACACTATGACT+GGG | 0.595446 | 1_2:+53696426 | Msa0077140:CDS |
| AAGCACCACTGTTATTTCAG+TGG | 0.599341 | 1_2:-53697537 | None:intergenic |
| TGATGGTGCTACCAAGACTA+CGG | 0.600087 | 1_2:+53697601 | Msa0077140:CDS |
| CGCTCCAAAATCGACTTACG+AGG | 0.601393 | 1_2:-53700276 | None:intergenic |
| GGTGTTTAGTCCTCAAGGAA+AGG | 0.602732 | 1_2:+53699476 | Msa0077140:CDS |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | 1_2:-53695431 | None:intergenic |
| GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1_2:+53699377 | Msa0077140:CDS |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1_2:+53696369 | Msa0077140:CDS |
| TGAACTCTTCTATGTTGACA+AGG | 0.614303 | 1_2:+53700243 | Msa0077140:CDS |
| ATAGCTGATGAAAATCTCCA+TGG | 0.615992 | 1_2:-53700632 | None:intergenic |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1_2:-53696531 | None:intergenic |
| ACTATGGCCACCATCATCAA+AGG | 0.622601 | 1_2:+53695274 | Msa0077140:exon |
| TCTGCTTCCTCAGTCTGCTG+AGG | 0.629344 | 1_2:-53696985 | None:intergenic |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1_2:+53696528 | Msa0077140:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1_2:-53696801 | None:intergenic |
| TCCTGATTGTCCTAGCACCA+TGG | 0.635274 | 1_2:+53700615 | Msa0077140:CDS |
| GCACCATCATAAAGCAGCTG+AGG | 0.635564 | 1_2:-53697587 | None:intergenic |
| ACATTCTGCACCACATACCA+TGG | 0.636446 | 1_2:-53699387 | None:intergenic |
| GCTCAACGCTCAATGTGAGG+TGG | 0.639418 | 1_2:-53701120 | None:intergenic |
| GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1_2:+53700391 | Msa0077140:CDS |
| GATCTCGTGAATAAGAGTGT+GGG | 0.653673 | 1_2:+53700785 | Msa0077140:three_prime_UTR |
| CAGACTGAGGAAGCAGATCA+CGG | 0.654516 | 1_2:+53696991 | Msa0077140:CDS |
| GGACCATCTGTTGTGTTGAG+TGG | 0.654679 | 1_2:+53700412 | Msa0077140:CDS |
| ACATCATCCTCAGCAGACTG+AGG | 0.659543 | 1_2:+53696978 | Msa0077140:CDS |
| TGATCTCGTGAATAAGAGTG+TGG | 0.660825 | 1_2:+53700784 | Msa0077140:three_prime_UTR |
| TATGCTCAACGCTCAATGTG+AGG | 0.663145 | 1_2:-53701123 | None:intergenic |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | 1_2:+53696684 | Msa0077140:CDS |
| TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1_2:+53700441 | Msa0077140:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | 1_2:-53695446 | None:intergenic |
| AACTCCCACTGAAATAACAG+TGG | 0.711449 | 1_2:+53697532 | Msa0077140:CDS |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | 1_2:-53695628 | None:intergenic |
| TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1_2:+53699230 | Msa0077140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGGATATTTAATTTAA+AGG | - | chr1_2:53695522-53695541 | None:intergenic | 10.0% |
| !! | ATAGATACTTAAAAAAAAAA+CGG | + | chr1_2:53696046-53696065 | Msa0077140:intron | 10.0% |
| !! | ATTAAACATATTAAAAAGTA+TGG | - | chr1_2:53696876-53696895 | None:intergenic | 10.0% |
| !!! | CTAATTTTTATTAATTATGT+AGG | + | chr1_2:53696915-53696934 | Msa0077140:intron | 10.0% |
| !! | ATACTAAATAAATAAAGTAA+AGG | - | chr1_2:53697114-53697133 | None:intergenic | 10.0% |
| !!! | AAATTTCTAATATTTTTCTT+TGG | - | chr1_2:53697943-53697962 | None:intergenic | 10.0% |
| !! | TAAACATAAAAAAAATCATA+CGG | + | chr1_2:53698483-53698502 | Msa0077140:intron | 10.0% |
| !!! | TTTAATTAAAAAGTATTATG+TGG | + | chr1_2:53698611-53698630 | Msa0077140:intron | 10.0% |
| !! | ACAAATTAATAAAAATTAAG+AGG | - | chr1_2:53699151-53699170 | None:intergenic | 10.0% |
| !! | TCATAACTATTATGAATTAA+AGG | - | chr1_2:53695538-53695557 | None:intergenic | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | - | chr1_2:53696134-53696153 | None:intergenic | 15.0% |
| !!! | TTAACTCATATTAGTTTAAT+TGG | - | chr1_2:53696259-53696278 | None:intergenic | 15.0% |
| !!! | AATATAAATTAGTTCTAATG+TGG | + | chr1_2:53697368-53697387 | Msa0077140:intron | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | + | chr1_2:53697391-53697410 | Msa0077140:intron | 15.0% |
| !! | TACAATTAATATATCTTTCT+TGG | - | chr1_2:53697427-53697446 | None:intergenic | 15.0% |
| !!! | AATATAAATTAGTTCTAATG+TGG | + | chr1_2:53697368-53697387 | Msa0077140:intron | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | + | chr1_2:53697391-53697410 | Msa0077140:intron | 15.0% |
| !! | AGAAAAATATTAGAAATTTG+TGG | + | chr1_2:53697944-53697963 | Msa0077140:intron | 15.0% |
| !!! | TGCTTTTAAATATTTTTTGT+TGG | - | chr1_2:53698547-53698566 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTTTAAACATGT+AGG | - | chr1_2:53698794-53698813 | None:intergenic | 15.0% |
| !! | ATAAATTCTAATGAAATTGA+TGG | + | chr1_2:53698885-53698904 | Msa0077140:intron | 15.0% |
| !!! | CTTTTTTTTCATATTTATCT+CGG | - | chr1_2:53699029-53699048 | None:intergenic | 15.0% |
| !! | GAGATAAATATGAAAAAAAA+GGG | + | chr1_2:53699028-53699047 | Msa0077140:intron | 15.0% |
| !!! | TTACAATCATATTTTGATTT+TGG | + | chr1_2:53699913-53699932 | Msa0077140:intron | 15.0% |
| !! | CGTCTTAAAAAAATATTATT+GGG | + | chr1_2:53700751-53700770 | Msa0077140:three_prime_UTR | 15.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | + | chr1_2:53695546-53695565 | Msa0077140:intron | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | + | chr1_2:53695547-53695566 | Msa0077140:intron | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | + | chr1_2:53696654-53696673 | Msa0077140:CDS | 20.0% |
| !!! | TAGAAAAGTTGATATCAATT+TGG | + | chr1_2:53698107-53698126 | Msa0077140:intron | 20.0% |
| !!! | TATATATTCTTTAAGAGCAA+TGG | + | chr1_2:53698130-53698149 | Msa0077140:intron | 20.0% |
| !! | TATCATTTCTCATTCTTTAA+AGG | + | chr1_2:53698318-53698337 | Msa0077140:intron | 20.0% |
| !! | ATCATTTCTCATTCTTTAAA+GGG | + | chr1_2:53698319-53698338 | Msa0077140:intron | 20.0% |
| !! | TGAATTCAACAAACTTTAAA+TGG | - | chr1_2:53698512-53698531 | None:intergenic | 20.0% |
| !! | AAGTAATCAAGTTAAAAATC+TGG | + | chr1_2:53698702-53698721 | Msa0077140:intron | 20.0% |
| !! | TAAATAGATAAGAAGAGAAA+AGG | - | chr1_2:53698939-53698958 | None:intergenic | 20.0% |
| !! | CGAGATAAATATGAAAAAAA+AGG | + | chr1_2:53699027-53699046 | Msa0077140:intron | 20.0% |
| !!! | TATTATTAGTGTTTTGTTGA+TGG | + | chr1_2:53699084-53699103 | Msa0077140:intron | 20.0% |
| !! | TTTCATGAAATTTACATGTT+TGG | - | chr1_2:53699793-53699812 | None:intergenic | 20.0% |
| !! | GCGTCTTAAAAAAATATTAT+TGG | + | chr1_2:53700750-53700769 | Msa0077140:three_prime_UTR | 20.0% |
| !!! | TCTTTATTTTACAACATAAG+TGG | - | chr1_2:53700841-53700860 | None:intergenic | 20.0% |
| ! | AGTAAATTTGATCCAAAATC+TGG | - | chr1_2:53695363-53695382 | None:intergenic | 25.0% |
| !! | TGTGTATGATGTTTATGTTT+TGG | - | chr1_2:53695725-53695744 | None:intergenic | 25.0% |
| ! | AAACATAAACATCATACACA+TGG | + | chr1_2:53695725-53695744 | Msa0077140:intron | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | + | chr1_2:53696671-53696690 | Msa0077140:CDS | 25.0% |
| ! | GTAAATTTCTTGATCTCTAA+CGG | + | chr1_2:53697036-53697055 | Msa0077140:intron | 25.0% |
| ! | AAAATGAGTACAAAACTTTG+TGG | + | chr1_2:53697710-53697729 | Msa0077140:intron | 25.0% |
| !!! | TCACAAAAGTTGTTGATTTT+TGG | - | chr1_2:53698167-53698186 | None:intergenic | 25.0% |
| !!! | TCTACTTTTCCTTTGAAAAT+TGG | - | chr1_2:53698196-53698215 | None:intergenic | 25.0% |
| ! | TTTAAAGGGACTTATCAATT+TGG | + | chr1_2:53698333-53698352 | Msa0077140:intron | 25.0% |
| !!! | TGATTACTTTTGTGACTTTT+TGG | - | chr1_2:53698691-53698710 | None:intergenic | 25.0% |
| ! | GAAATTAGTACTATACGAAA+AGG | + | chr1_2:53698724-53698743 | Msa0077140:intron | 25.0% |
| !! | TAATTTACGAAAAGTATGTG+TGG | - | chr1_2:53698770-53698789 | None:intergenic | 25.0% |
| !! | TTTTTCATATTTATCTCGGT+TGG | - | chr1_2:53699025-53699044 | None:intergenic | 25.0% |
| ! | ATGAACAATACAAGATTGTT+TGG | + | chr1_2:53699298-53699317 | Msa0077140:CDS | 25.0% |
| !! | GCAAGAAATTCGATATTTTA+AGG | + | chr1_2:53699355-53699374 | Msa0077140:CDS | 25.0% |
| ! | TCAAGTTCATTAATGAAGAA+TGG | + | chr1_2:53699427-53699446 | Msa0077140:CDS | 25.0% |
| ! | CAAGTTCATTAATGAAGAAT+GGG | + | chr1_2:53699428-53699447 | Msa0077140:CDS | 25.0% |
| ! | TTTCATCATCCATTGTAAAT+GGG | - | chr1_2:53699554-53699573 | None:intergenic | 25.0% |
| ! | ATTTCATCATCCATTGTAAA+TGG | - | chr1_2:53699555-53699574 | None:intergenic | 25.0% |
| ! | TGATGAAATAAGAATTCAGA+AGG | + | chr1_2:53699566-53699585 | Msa0077140:CDS | 25.0% |
| ! | TTACAAAAATGAAACTGGTT+GGG | + | chr1_2:53700375-53700394 | Msa0077140:CDS | 25.0% |
| ! | AAAGATGTTGTTATCAAGAA+GGG | + | chr1_2:53700481-53700500 | Msa0077140:CDS | 25.0% |
| ! | AATGCAAATGCAAAACATTA+GGG | + | chr1_2:53700676-53700695 | Msa0077140:CDS | 25.0% |
| !!! | TTGACGTATTTTTATGTTAC+TGG | + | chr1_2:53700700-53700719 | Msa0077140:three_prime_UTR | 25.0% |
| !!! | TGACGTATTTTTATGTTACT+GGG | + | chr1_2:53700701-53700720 | Msa0077140:three_prime_UTR | 25.0% |
| ! | TCTTTGTAAACCCAAAATAA+TGG | + | chr1_2:53700861-53700880 | Msa0077140:three_prime_UTR | 25.0% |
| TGAACTAAAATTCGGGATAA+GGG | - | chr1_2:53695608-53695627 | None:intergenic | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | + | chr1_2:53696612-53696631 | Msa0077140:CDS | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | - | chr1_2:53696684-53696703 | None:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | + | chr1_2:53696684-53696703 | Msa0077140:CDS | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | + | chr1_2:53696737-53696756 | Msa0077140:CDS | 30.0% | |
| ATTGTTCTGTAAGTACAACT+CGG | - | chr1_2:53696851-53696870 | None:intergenic | 30.0% | |
| ATTATTATGACACGTGTTTC+TGG | - | chr1_2:53698005-53698024 | None:intergenic | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | + | chr1_2:53698004-53698023 | Msa0077140:intron | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | + | chr1_2:53698005-53698024 | Msa0077140:intron | 30.0% | |
| !! | ACTTTTCCTTTGAAAATTGG+TGG | - | chr1_2:53698193-53698212 | None:intergenic | 30.0% |
| !! | TGTGACTTTTTGGTGTATTA+TGG | - | chr1_2:53698681-53698700 | None:intergenic | 30.0% |
| ! | TGTTAGCTTAATGCTTAGAA+TGG | - | chr1_2:53699122-53699141 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAAACCGTGC+AGG | + | chr1_2:53699161-53699180 | Msa0077140:intron | 30.0% |
| CAAAAAGAAGTCTATGTTTG+TGG | + | chr1_2:53699455-53699474 | Msa0077140:CDS | 30.0% | |
| TTCCATTTGATCAAGTCTTA+TGG | + | chr1_2:53699516-53699535 | Msa0077140:CDS | 30.0% | |
| TTCCATAAGACTTGATCAAA+TGG | - | chr1_2:53699521-53699540 | None:intergenic | 30.0% | |
| AAATAAGAATTCAGAAGGAC+AGG | + | chr1_2:53699571-53699590 | Msa0077140:CDS | 30.0% | |
| TTAACCACAACATTTCCATA+TGG | + | chr1_2:53699622-53699641 | Msa0077140:CDS | 30.0% | |
| TAACCACAACATTTCCATAT+GGG | + | chr1_2:53699623-53699642 | Msa0077140:CDS | 30.0% | |
| CGAAAATTTACTTACCCATA+TGG | - | chr1_2:53699640-53699659 | None:intergenic | 30.0% | |
| ! | TGTAAAGACCGTTGAATTTT+GGG | + | chr1_2:53699699-53699718 | Msa0077140:intron | 30.0% |
| ! | AACAAGCACATTTTCTTCTA+CGG | + | chr1_2:53700130-53700149 | Msa0077140:CDS | 30.0% |
| !! | ATCGGTTGTTTTGTGAATTT+TGG | - | chr1_2:53700323-53700342 | None:intergenic | 30.0% |
| CTGTCTTACAAAAATGAAAC+TGG | + | chr1_2:53700370-53700389 | Msa0077140:CDS | 30.0% | |
| CTTACAAAAATGAAACTGGT+TGG | + | chr1_2:53700374-53700393 | Msa0077140:CDS | 30.0% | |
| TACAACAATTCTCAAAACTG+TGG | + | chr1_2:53700441-53700460 | Msa0077140:CDS | 30.0% | |
| GAAAGATGTTGTTATCAAGA+AGG | + | chr1_2:53700480-53700499 | Msa0077140:CDS | 30.0% | |
| CAATGCAAATGCAAAACATT+AGG | + | chr1_2:53700675-53700694 | Msa0077140:CDS | 30.0% | |
| ! | CAACACAACACCATTATTTT+GGG | - | chr1_2:53700874-53700893 | None:intergenic | 30.0% |
| ! | ACAACACAACACCATTATTT+TGG | - | chr1_2:53700875-53700894 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCTATGTATTG+TGG | + | chr1_2:53700888-53700907 | Msa0077140:three_prime_UTR | 30.0% |
| ! | TTTTCTATGTATTGTGGTTG+TGG | + | chr1_2:53700894-53700913 | Msa0077140:three_prime_UTR | 30.0% |
| AATGTGAGGTGGAATAAAAT+TGG | - | chr1_2:53701112-53701131 | None:intergenic | 30.0% | |
| CTAGCTCGTTAAAAAAGGTT+TGG | - | chr1_2:53695253-53695272 | None:intergenic | 35.0% | |
| TAGTGCTAGCTCGTTAAAAA+AGG | - | chr1_2:53695258-53695277 | None:intergenic | 35.0% | |
| ! | TTTTTAACGAGCTAGCACTA+TGG | + | chr1_2:53695258-53695277 | Msa0077140:exon | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | - | chr1_2:53695287-53695306 | None:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | - | chr1_2:53695396-53695415 | None:intergenic | 35.0% |
| GTGAACTAAAATTCGGGATA+AGG | - | chr1_2:53695609-53695628 | None:intergenic | 35.0% | |
| ACAGTGGTGAACTAAAATTC+GGG | - | chr1_2:53695615-53695634 | None:intergenic | 35.0% | |
| CACAGTGGTGAACTAAAATT+CGG | - | chr1_2:53695616-53695635 | None:intergenic | 35.0% | |
| ! | CTCAGAAGAAATTGACTTCA+AGG | - | chr1_2:53695641-53695660 | None:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | + | chr1_2:53695639-53695658 | Msa0077140:CDS | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | + | chr1_2:53696472-53696491 | Msa0077140:CDS | 35.0% | |
| ! | CACTTGAATTTGGTGAATTC+TGG | + | chr1_2:53696482-53696501 | Msa0077140:CDS | 35.0% |
| TATTAAGCTCAGTGATAGCT+TGG | - | chr1_2:53696609-53696628 | None:intergenic | 35.0% | |
| ATAGTCCAGTAAACATCAAC+AGG | - | chr1_2:53696745-53696764 | None:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | - | chr1_2:53696804-53696823 | None:intergenic | 35.0% | |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | - | chr1_2:53697096-53697115 | None:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | - | chr1_2:53697511-53697530 | None:intergenic | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | + | chr1_2:53697559-53697578 | Msa0077140:CDS | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | + | chr1_2:53697560-53697579 | Msa0077140:CDS | 35.0% |
| ! | TGACAACCACCAATTTTCAA+AGG | + | chr1_2:53698184-53698203 | Msa0077140:intron | 35.0% |
| AGGAAAAGTAGATAGTGACA+CGG | + | chr1_2:53698204-53698223 | Msa0077140:intron | 35.0% | |
| ACTTTCTCTCTCTATTGCTT+TGG | - | chr1_2:53698233-53698252 | None:intergenic | 35.0% | |
| GAGAGATAAAGTTGTCACAT+AGG | + | chr1_2:53698272-53698291 | Msa0077140:intron | 35.0% | |
| TCACATAGGTTGTCACAAAA+TGG | + | chr1_2:53698286-53698305 | Msa0077140:intron | 35.0% | |
| GAAAAGGTAACTTCTATGCA+AGG | - | chr1_2:53698923-53698942 | None:intergenic | 35.0% | |
| AACATTAATGTCAACCTGCA+CGG | - | chr1_2:53699178-53699197 | None:intergenic | 35.0% | |
| ! | TGTTTCTACTCTAGATGTCA+CGG | + | chr1_2:53699227-53699246 | Msa0077140:CDS | 35.0% |
| !! | TTTTAAGGAGTAAGATGCCA+TGG | + | chr1_2:53699370-53699389 | Msa0077140:CDS | 35.0% |
| ! | GATCAAGTCTTATGGAATCA+AGG | + | chr1_2:53699524-53699543 | Msa0077140:CDS | 35.0% |
| AACTGGATTGTATCTGTTGT+AGG | + | chr1_2:53699594-53699613 | Msa0077140:CDS | 35.0% | |
| TTACCCATATGGAAATGTTG+TGG | - | chr1_2:53699629-53699648 | None:intergenic | 35.0% | |
| ! | GGGTAAGTAAATTTTCGACT+TGG | + | chr1_2:53699643-53699662 | Msa0077140:intron | 35.0% |
| AACAACATACTTCACAACTG+TGG | - | chr1_2:53699674-53699693 | None:intergenic | 35.0% | |
| ! | GTGTAAAGACCGTTGAATTT+TGG | + | chr1_2:53699698-53699717 | Msa0077140:intron | 35.0% |
| GCTTCTCTCTTTAAATCTCA+CGG | + | chr1_2:53699740-53699759 | Msa0077140:intron | 35.0% | |
| TTACAACTTCAGCAGATACA+CGG | + | chr1_2:53699766-53699785 | Msa0077140:intron | 35.0% | |
| TTGCATACTTAGTGAACTGT+TGG | - | chr1_2:53700177-53700196 | None:intergenic | 35.0% | |
| GTCAACATAGAAGAGTTCAA+TGG | - | chr1_2:53700242-53700261 | None:intergenic | 35.0% | |
| TGAACTCTTCTATGTTGACA+AGG | + | chr1_2:53700243-53700262 | Msa0077140:CDS | 35.0% | |
| !! | AAAACCTCGTAAGTCGATTT+TGG | + | chr1_2:53700272-53700291 | Msa0077140:CDS | 35.0% |
| ! | AACTTCTTGTGTCACTACAT+CGG | - | chr1_2:53700341-53700360 | None:intergenic | 35.0% |
| CAGCAACAATAGGAATTTCA+AGG | - | chr1_2:53700570-53700589 | None:intergenic | 35.0% | |
| CTTGAAATTCCTATTGTTGC+TGG | + | chr1_2:53700568-53700587 | Msa0077140:CDS | 35.0% | |
| ! | TCAGGACATTTTATAGTCTC+AGG | - | chr1_2:53700601-53700620 | None:intergenic | 35.0% |
| ATAGCTGATGAAAATCTCCA+TGG | - | chr1_2:53700635-53700654 | None:intergenic | 35.0% | |
| ! | TTTTATGTTACTGGGTCTTG+TGG | + | chr1_2:53700709-53700728 | Msa0077140:three_prime_UTR | 35.0% |
| ! | ATTTTACAACATAAGTGGCG+TGG | - | chr1_2:53700836-53700855 | None:intergenic | 35.0% |
| ATATGTACACTTGTGTGAAG+AGG | + | chr1_2:53701032-53701051 | Msa0077140:three_prime_UTR | 35.0% | |
| !! | AAGAGTACCTTTGATGATGG+TGG | - | chr1_2:53695284-53695303 | None:intergenic | 40.0% |
| GGTCATCAGACATGGTTAAT+GGG | - | chr1_2:53695342-53695361 | None:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | - | chr1_2:53695343-53695362 | None:intergenic | 40.0% | |
| CAAAATCTGGTCATCAGACA+TGG | - | chr1_2:53695350-53695369 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGACCAGATTT+TGG | + | chr1_2:53695348-53695367 | Msa0077140:CDS | 40.0% |
| AATGTGTGTTGAACGTGCAA+GGG | - | chr1_2:53695449-53695468 | None:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | - | chr1_2:53696385-53696404 | None:intergenic | 40.0% | |
| ! | GTGTGAAAGCTTGTTCAGTA+TGG | - | chr1_2:53696419-53696438 | None:intergenic | 40.0% |
| ACAAGCTTTCACACTATGAC+TGG | + | chr1_2:53696425-53696444 | Msa0077140:CDS | 40.0% | |
| CAAGCTTTCACACTATGACT+GGG | + | chr1_2:53696426-53696445 | Msa0077140:CDS | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | - | chr1_2:53696542-53696561 | None:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | - | chr1_2:53696586-53696605 | None:intergenic | 40.0% |
| TGCTGCTATTGTTACTCAGT+TGG | + | chr1_2:53696774-53696793 | Msa0077140:CDS | 40.0% | |
| AAGCAAGAACTTTCGCACTA+TGG | + | chr1_2:53696944-53696963 | Msa0077140:CDS | 40.0% | |
| !! | GGTATGGTGTTACAGTTGTA+AGG | - | chr1_2:53697063-53697082 | None:intergenic | 40.0% |
| AACTCCCACTGAAATAACAG+TGG | + | chr1_2:53697532-53697551 | Msa0077140:CDS | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+GGG | - | chr1_2:53697539-53697558 | None:intergenic | 40.0% |
| !! | AAGCACCACTGTTATTTCAG+TGG | - | chr1_2:53697540-53697559 | None:intergenic | 40.0% |
| AAAGATACGAACCGTAGTCT+TGG | - | chr1_2:53697615-53697634 | None:intergenic | 40.0% | |
| CAGAATGTCGAAAACATAGC+TGG | + | chr1_2:53699402-53699421 | Msa0077140:CDS | 40.0% | |
| TTTGTGGTGTTTAGTCCTCA+AGG | + | chr1_2:53699471-53699490 | Msa0077140:CDS | 40.0% | |
| CAAGGCTTTCCCATTTACAA+TGG | + | chr1_2:53699542-53699561 | Msa0077140:CDS | 40.0% | |
| AACATACTTCACAACTGTGG+AGG | - | chr1_2:53699671-53699690 | None:intergenic | 40.0% | |
| GCTTCTCTCCCAAAATTCAA+CGG | - | chr1_2:53699710-53699729 | None:intergenic | 40.0% | |
| GTGTATCTGCTGAAGTTGTA+AGG | - | chr1_2:53699767-53699786 | None:intergenic | 40.0% | |
| GAAAATGTGCTTGTTCTGCT+CGG | - | chr1_2:53700125-53700144 | None:intergenic | 40.0% | |
| ! | AAGCACATTTTCTTCTACGG+CGG | + | chr1_2:53700133-53700152 | Msa0077140:CDS | 40.0% |
| GTTGGATCCATTCTTTGTCA+TGG | - | chr1_2:53700159-53700178 | None:intergenic | 40.0% | |
| CTGTGGCTGAATTTGAGAAA+TGG | + | chr1_2:53700458-53700477 | Msa0077140:CDS | 40.0% | |
| GGTAACTTTCCAGCAACAAT+AGG | - | chr1_2:53700580-53700599 | None:intergenic | 40.0% | |
| ATGAAAATCTCCATGGTGCT+AGG | - | chr1_2:53700628-53700647 | None:intergenic | 40.0% | |
| CATTTGCATTGCTCTTGTTG+TGG | - | chr1_2:53700666-53700685 | None:intergenic | 40.0% | |
| TGATCTCGTGAATAAGAGTG+TGG | + | chr1_2:53700784-53700803 | Msa0077140:three_prime_UTR | 40.0% | |
| ! | GATCTCGTGAATAAGAGTGT+GGG | + | chr1_2:53700785-53700804 | Msa0077140:three_prime_UTR | 40.0% |
| ACTATGGCCACCATCATCAA+AGG | + | chr1_2:53695274-53695293 | Msa0077140:exon | 45.0% | |
| CTTAAGACTCTCCTATCAGC+AGG | + | chr1_2:53695301-53695320 | Msa0077140:CDS | 45.0% | |
| TCTCAATCTCACCTGCTGAT+AGG | - | chr1_2:53695315-53695334 | None:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | - | chr1_2:53695434-53695453 | None:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | - | chr1_2:53695450-53695469 | None:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | + | chr1_2:53695465-53695484 | Msa0077140:CDS | 45.0% | |
| ! | ACAGGGTACCAAAGTAAGCT+TGG | + | chr1_2:53695564-53695583 | Msa0077140:intron | 45.0% |
| TGCTTGCTCCAAGCTTACTT+TGG | - | chr1_2:53695575-53695594 | None:intergenic | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | - | chr1_2:53695631-53695650 | None:intergenic | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | - | chr1_2:53696382-53696401 | None:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | - | chr1_2:53696534-53696553 | None:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | - | chr1_2:53696535-53696554 | None:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | + | chr1_2:53696699-53696718 | Msa0077140:CDS | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | - | chr1_2:53696715-53696734 | None:intergenic | 45.0% | |
| ACGGTCTGTCGTCAACAAAT+AGG | + | chr1_2:53697010-53697029 | Msa0077140:CDS | 45.0% | |
| CATCGGATACAGATGTGGTA+TGG | - | chr1_2:53697079-53697098 | None:intergenic | 45.0% | |
| TACCACATCTGTATCCGATG+AGG | + | chr1_2:53697079-53697098 | Msa0077140:intron | 45.0% | |
| ATCCTCATCGGATACAGATG+TGG | - | chr1_2:53697084-53697103 | None:intergenic | 45.0% | |
| GGAAAATGTTAACGAGTGCC+CGG | + | chr1_2:53697142-53697161 | Msa0077140:intron | 45.0% | |
| GAAAATGTTAACGAGTGCCC+GGG | + | chr1_2:53697143-53697162 | Msa0077140:intron | 45.0% | |
| AAAATGTTAACGAGTGCCCG+GGG | + | chr1_2:53697144-53697163 | Msa0077140:intron | 45.0% | |
| ! | GTTCCTCAGCTGCTTTATGA+TGG | + | chr1_2:53697584-53697603 | Msa0077140:CDS | 45.0% |
| !! | TGATGGTGCTACCAAGACTA+CGG | + | chr1_2:53697601-53697620 | Msa0077140:CDS | 45.0% |
| TTCTACTCTAGATGTCACGG+AGG | + | chr1_2:53699230-53699249 | Msa0077140:CDS | 45.0% | |
| GGATTCCAATCGTCGAAGAA+TGG | + | chr1_2:53699319-53699338 | Msa0077140:CDS | 45.0% | |
| TCGTTCCATTCTTCGACGAT+TGG | - | chr1_2:53699327-53699346 | None:intergenic | 45.0% | |
| GAGTAAGATGCCATGGTATG+TGG | + | chr1_2:53699377-53699396 | Msa0077140:CDS | 45.0% | |
| ACATTCTGCACCACATACCA+TGG | - | chr1_2:53699390-53699409 | None:intergenic | 45.0% | |
| GGTGTTTAGTCCTCAAGGAA+AGG | + | chr1_2:53699476-53699495 | Msa0077140:CDS | 45.0% | |
| TTGTGTTGCACCTTTCCTTG+AGG | - | chr1_2:53699489-53699508 | None:intergenic | 45.0% | |
| GAATTCAGAAGGACAGGAAC+TGG | + | chr1_2:53699577-53699596 | Msa0077140:CDS | 45.0% | |
| ! | TGGGAGAGAAGCGATTTTAG+TGG | + | chr1_2:53699718-53699737 | Msa0077140:intron | 45.0% |
| TTCTGCTCGGTCTGCATTAT+AGG | - | chr1_2:53700112-53700131 | None:intergenic | 45.0% | |
| !! | CTCGTAAGTCGATTTTGGAG+CGG | + | chr1_2:53700277-53700296 | Msa0077140:CDS | 45.0% |
| CAACAGATGGTCCTTTGCTA+AGG | - | chr1_2:53700405-53700424 | None:intergenic | 45.0% | |
| TGACCACTCAACACAACAGA+TGG | - | chr1_2:53700418-53700437 | None:intergenic | 45.0% | |
| TCTGTTGTGTTGAGTGGTCA+TGG | + | chr1_2:53700418-53700437 | Msa0077140:CDS | 45.0% | |
| ! | TTACTGGGTCTTGTGGTCTT+TGG | + | chr1_2:53700716-53700735 | Msa0077140:three_prime_UTR | 45.0% |
| ! | GTGGGACATTCAGAACCTTT+TGG | + | chr1_2:53700803-53700822 | Msa0077140:three_prime_UTR | 45.0% |
| TGGCGTGGAACATAACCAAA+AGG | - | chr1_2:53700821-53700840 | None:intergenic | 45.0% | |
| ! | GTGGTGTAGTCTTGAAGCTT+TGG | + | chr1_2:53700913-53700932 | Msa0077140:three_prime_UTR | 45.0% |
| !!! | TAATTTTTATTAATTATGTA+GGG | + | chr1_2:53696916-53696935 | Msa0077140:intron | 5.0% |
| !! | ATTTATTTAGTATTATTAAA+AGG | + | chr1_2:53697121-53697140 | Msa0077140:intron | 5.0% |
| !!! | AATTAATATGTTTTTAATAA+GGG | - | chr1_2:53697315-53697334 | None:intergenic | 5.0% |
| !!! | AAATTAATATGTTTTTAATA+AGG | - | chr1_2:53697316-53697335 | None:intergenic | 5.0% |
| !! | TGAAATTTATAAAAAAAATA+CGG | + | chr1_2:53698387-53698406 | Msa0077140:intron | 5.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | - | chr1_2:53695386-53695405 | None:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | - | chr1_2:53695435-53695454 | None:intergenic | 50.0% |
| AGACCCACTTGCCAAATCTG+TGG | + | chr1_2:53696528-53696547 | Msa0077140:CDS | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | - | chr1_2:53696576-53696595 | None:intergenic | 50.0% | |
| ACATCATCCTCAGCAGACTG+AGG | + | chr1_2:53696978-53696997 | Msa0077140:CDS | 50.0% | |
| CAGACTGAGGAAGCAGATCA+CGG | + | chr1_2:53696991-53697010 | Msa0077140:CDS | 50.0% | |
| GCACCATCATAAAGCAGCTG+AGG | - | chr1_2:53697590-53697609 | None:intergenic | 50.0% | |
| ! | CGCTCCAAAATCGACTTACG+AGG | - | chr1_2:53700279-53700298 | None:intergenic | 50.0% |
| GGACCATCTGTTGTGTTGAG+TGG | + | chr1_2:53700412-53700431 | Msa0077140:CDS | 50.0% | |
| ATGAGTGACACGAGCAACAC+TGG | - | chr1_2:53700536-53700555 | None:intergenic | 50.0% | |
| TCCTGATTGTCCTAGCACCA+TGG | + | chr1_2:53700615-53700634 | Msa0077140:CDS | 50.0% | |
| ! | TCCATGGTGCTAGGACAATC+AGG | - | chr1_2:53700619-53700638 | None:intergenic | 50.0% |
| ! | GTGGTCTTTGGTTCGAGACT+TGG | + | chr1_2:53700728-53700747 | Msa0077140:three_prime_UTR | 50.0% |
| GTCATGCAAGCCACCAAGTG+AGG | + | chr1_2:53696369-53696388 | Msa0077140:CDS | 55.0% | |
| CTGCAGGCTTTGCTAGGATC+GGG | - | chr1_2:53696570-53696589 | None:intergenic | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | - | chr1_2:53696571-53696590 | None:intergenic | 55.0% | |
| TCTGCTTCCTCAGTCTGCTG+AGG | - | chr1_2:53696988-53697007 | None:intergenic | 55.0% | |
| AGCTTCCTTAACCAGTGCCC+CGG | - | chr1_2:53697164-53697183 | None:intergenic | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr1_2:53697271-53697290 | Msa0077140:intron | 55.0% | |
| TCTTGTTAACCGATGCCCCC+GGG | - | chr1_2:53697292-53697311 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCGATGCCCC+CGG | - | chr1_2:53697293-53697312 | None:intergenic | 55.0% |
| AGCAGCTGAGGAACACCCTT+GGG | - | chr1_2:53697578-53697597 | None:intergenic | 55.0% | |
| AAGCAGCTGAGGAACACCCT+TGG | - | chr1_2:53697579-53697598 | None:intergenic | 55.0% | |
| ACGGCGGCCATGACAAAGAA+TGG | + | chr1_2:53700149-53700168 | Msa0077140:CDS | 55.0% | |
| GGTTGGGCTCTCCTTAGCAA+AGG | + | chr1_2:53700391-53700410 | Msa0077140:CDS | 55.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | - | chr1_2:53697272-53697291 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr1_2:53697272-53697291 | Msa0077140:intron | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | chr1_2:53697273-53697292 | Msa0077140:intron | 60.0% | |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr1_2:53697274-53697293 | Msa0077140:intron | 60.0% | |
| CTTGTTAACCGATGCCCCCG+GGG | - | chr1_2:53697291-53697310 | None:intergenic | 60.0% | |
| TTAACGAGTGCCCGGGGCAC+TGG | + | chr1_2:53697150-53697169 | Msa0077140:intron | 65.0% | |
| !! | AGTGCCCGGGGCACTGGTTA+AGG | + | chr1_2:53697156-53697175 | Msa0077140:intron | 65.0% |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr1_2:53697279-53697298 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAT+CGG | + | chr1_2:53697280-53697299 | Msa0077140:intron | 70.0% |
| AACCGATGCCCCCGGGGCAC+TGG | - | chr1_2:53697285-53697304 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53695213 | 53701136 | 53695213 | ID=Msa0077140;Name=Msa0077140 |
| chr1_2 | mRNA | 53695213 | 53701136 | 53695213 | ID=Msa0077140-mRNA-1;Parent=Msa0077140;Name=Msa0077140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=64|1|1|1|1|1|7|440|671 |
| chr1_2 | exon | 53695213 | 53695486 | 53695213 | ID=Msa0077140-mRNA-1:exon:16626;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53695568 | 53695660 | 53695568 | ID=Msa0077140-mRNA-1:exon:16627;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53696367 | 53696815 | 53696367 | ID=Msa0077140-mRNA-1:exon:16628;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53696937 | 53697031 | 53696937 | ID=Msa0077140-mRNA-1:exon:16629;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53697492 | 53697622 | 53697492 | ID=Msa0077140-mRNA-1:exon:16630;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53699183 | 53699644 | 53699183 | ID=Msa0077140-mRNA-1:exon:16631;Parent=Msa0077140-mRNA-1 |
| chr1_2 | exon | 53700121 | 53701136 | 53700121 | ID=Msa0077140-mRNA-1:exon:16632;Parent=Msa0077140-mRNA-1 |
| chr1_2 | five_prime_UTR | 53695213 | 53695276 | 53695213 | ID=Msa0077140-mRNA-1:five_prime_utr;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53695277 | 53695486 | 53695277 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53695568 | 53695660 | 53695568 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53696367 | 53696815 | 53696367 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53696937 | 53697031 | 53696937 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53697492 | 53697622 | 53697492 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53699183 | 53699644 | 53699183 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | CDS | 53700121 | 53700696 | 53700121 | ID=Msa0077140-mRNA-1:cds;Parent=Msa0077140-mRNA-1 |
| chr1_2 | three_prime_UTR | 53700697 | 53701136 | 53700697 | ID=Msa0077140-mRNA-1:three_prime_utr;Parent=Msa0077140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
