Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464160 | XP_003590760.1 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464160 | sp|Q9SS87|SEOB_ARATH | 31.250 | 320 | 195 | 8 | 23 | 324 | 34 | 346 | 2.58e-29 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464160 | E2FKJ6 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029880 | Msa1464160 | 0.906880 | 9.237984e-81 | -8.615850e-47 |
| Msa0029890 | Msa1464160 | 0.874813 | 5.036759e-68 | -8.615850e-47 |
| Msa0029900 | Msa1464160 | 0.835485 | 1.632893e-56 | -8.615850e-47 |
| Msa0029910 | Msa1464160 | 0.803858 | 2.852015e-49 | -8.615850e-47 |
| Msa0077130 | Msa1464160 | 0.832150 | 1.113656e-55 | -8.615850e-47 |
| Msa0077140 | Msa1464160 | 0.866225 | 3.331505e-65 | -8.615850e-47 |
| Msa0125090 | Msa1464160 | 0.859036 | 5.460589e-63 | -8.615850e-47 |
| Msa0125100 | Msa1464160 | 0.850174 | 2.013171e-60 | -8.615850e-47 |
| Msa0125110 | Msa1464160 | 0.815361 | 9.616942e-52 | -8.615850e-47 |
| Msa0169860 | Msa1464160 | 0.854783 | 9.777070e-62 | -8.615850e-47 |
| Msa0169870 | Msa1464160 | 0.878480 | 2.714720e-69 | -8.615850e-47 |
| Msa0169920 | Msa1464160 | 0.810628 | 1.048910e-50 | -8.615850e-47 |
| Msa0170090 | Msa1464160 | 0.836880 | 7.219380e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464160 | MtrunA17_Chr1g0186841 | 99.080 | 326 | 3 | 0 | 1 | 326 | 1 | 326 | 0.0 | 650 |
| Msa1464160 | MtrunA17_Chr1g0186851 | 61.371 | 321 | 120 | 2 | 9 | 325 | 5 | 325 | 7.56e-136 | 400 |
| Msa1464160 | MtrunA17_Chr1g0186861 | 62.379 | 311 | 114 | 2 | 18 | 325 | 17 | 327 | 7.37e-131 | 387 |
| Msa1464160 | MtrunA17_Chr1g0187041 | 56.442 | 326 | 140 | 2 | 1 | 325 | 1 | 325 | 2.07e-114 | 345 |
| Msa1464160 | MtrunA17_Chr1g0186911 | 63.111 | 225 | 82 | 1 | 102 | 325 | 1 | 225 | 1.91e-91 | 283 |
| Msa1464160 | MtrunA17_Chr1g0165791 | 41.042 | 307 | 173 | 3 | 20 | 324 | 24 | 324 | 2.51e-68 | 226 |
| Msa1464160 | MtrunA17_Chr1g0187001 | 32.381 | 315 | 178 | 7 | 13 | 325 | 3 | 284 | 2.08e-37 | 141 |
| Msa1464160 | MtrunA17_Chr3g0116601 | 32.817 | 323 | 196 | 8 | 19 | 324 | 21 | 339 | 6.15e-36 | 137 |
| Msa1464160 | MtrunA17_Chr8g0381301 | 33.438 | 320 | 192 | 8 | 23 | 324 | 17 | 333 | 8.78e-35 | 134 |
| Msa1464160 | MtrunA17_Chr1g0186991 | 33.681 | 288 | 163 | 8 | 21 | 308 | 31 | 290 | 2.92e-32 | 126 |
| Msa1464160 | MtrunA17_Chr1g0186981 | 31.481 | 324 | 175 | 10 | 6 | 321 | 19 | 303 | 6.34e-31 | 122 |
| Msa1464160 | MtrunA17_Chr1g0186901 | 62.069 | 87 | 31 | 1 | 18 | 102 | 17 | 103 | 1.52e-30 | 112 |
| Msa1464160 | MtrunA17_Chr7g0226571 | 33.526 | 346 | 200 | 12 | 1 | 324 | 1 | 338 | 2.29e-30 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464160 | AT3G01680.1 | 31.250 | 320 | 195 | 8 | 23 | 324 | 34 | 346 | 2.63e-30 | 121 |
| Msa1464160 | AT3G01670.2 | 24.159 | 327 | 206 | 10 | 23 | 322 | 158 | 469 | 8.33e-13 | 69.7 |
| Msa1464160 | AT3G01670.1 | 24.159 | 327 | 206 | 10 | 23 | 322 | 134 | 445 | 9.54e-13 | 69.3 |
Find 63 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCATTTGCACTTGAATT+TGG | 0.156452 | tig0043930:-939 | Msa1464160:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.193634 | tig0043930:-674 | Msa1464160:CDS |
| CATTGAATTTATACTTGAAT+TGG | 0.266351 | tig0043930:-757 | Msa1464160:CDS |
| TTGTGTCATACCTATCATTA+AGG | 0.284079 | tig0043930:+730 | Msa1464160:intergenic |
| TGGTCATCAGACATGGTTAA+TGG | 0.290518 | tig0043930:+2080 | Msa1464160:intergenic |
| CACTTGAATTTGGAGAATTC+TGG | 0.291113 | tig0043930:-929 | Msa1464160:CDS |
| CATGTCTGATGACCAGATTT+TGG | 0.311388 | tig0043930:-2072 | Msa1464160:CDS |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | tig0043930:-712 | Msa1464160:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | tig0043930:-799 | Msa1464160:CDS |
| AATTGGATTACCTTAATGAT+AGG | 0.331280 | tig0043930:-740 | Msa1464160:CDS |
| ACAGGGTACCAAAGTAAGTT+TGG | 0.339438 | tig0043930:-1856 | Msa1464160:intron |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | tig0043930:+1782 | Msa1464160:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | tig0043930:+872 | Msa1464160:intergenic |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | tig0043930:+162 | Msa1464160:intergenic |
| AGTAAATTTGATCCAAAATC+TGG | 0.381034 | tig0043930:+2060 | Msa1464160:intergenic |
| TGCTGCTATTGTTACTCAGT+TGG | 0.382885 | tig0043930:-637 | Msa1464160:CDS |
| ATGTGAAAGCTTGTTCAGTA+TGG | 0.402535 | tig0043930:+995 | Msa1464160:intergenic |
| GTTCCTCAGTTGCTTTATGA+TGG | 0.403939 | tig0043930:-86 | Msa1464160:CDS |
| TGCTTGCTCCAAACTTACTT+TGG | 0.423004 | tig0043930:+1848 | Msa1464160:intergenic |
| GGTCATCAGACATGGTTAAT+GGG | 0.438624 | tig0043930:+2081 | Msa1464160:intergenic |
| ATAGTCCAGTAAACATCAAC+AGG | 0.440292 | tig0043930:+669 | Msa1464160:intergenic |
| AGCACCACTGTTATTTCAGT+TGG | 0.443068 | tig0043930:+134 | Msa1464160:intergenic |
| TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | tig0043930:+1029 | Msa1464160:intergenic |
| TCTCAATCTCACCAGCTGAT+AGG | 0.452782 | tig0043930:+2108 | Msa1464160:intergenic |
| GTGAACTAAAATTCGAGATA+AGG | 0.465871 | tig0043930:+1814 | Msa1464160:intergenic |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | tig0043930:+838 | Msa1464160:intergenic |
| CTTAAGAGTACCTTTGATGA+TGG | 0.470957 | tig0043930:+2136 | Msa1464160:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | tig0043930:+1032 | Msa1464160:intergenic |
| AAGCAAGAACTTTCCCACTA+TGG | 0.489618 | tig0043930:-462 | Msa1464160:CDS |
| ACAAGCTTTCACATTATGAC+TGG | 0.491657 | tig0043930:-986 | Msa1464160:CDS |
| AGCAACTGAGGAACACCCTT+GGG | 0.498957 | tig0043930:+95 | Msa1464160:intergenic |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | tig0043930:-1781 | Msa1464160:intron |
| TGAACTAAAATTCGAGATAA+GGG | 0.515629 | tig0043930:+1815 | Msa1464160:intergenic |
| AAAGATACGAACCGTAGTCT+TGG | 0.515674 | tig0043930:+58 | Msa1464160:intergenic |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | tig0043930:+805 | Msa1464160:intergenic |
| CTTAAGACTCTCCTATCAGC+TGG | 0.547460 | tig0043930:-2119 | Msa1464160:CDS |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | tig0043930:-1955 | Msa1464160:intron |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.562793 | tig0043930:+843 | Msa1464160:intergenic |
| CAAGCTTTCACATTATGACT+GGG | 0.564097 | tig0043930:-985 | Msa1464160:CDS |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | tig0043930:+1973 | None:intergenic |
| AAGCAACTGAGGAACACCCT+TGG | 0.576598 | tig0043930:+94 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | tig0043930:+699 | None:intergenic |
| CAAAATCTGGTCATCAGACA+TGG | 0.578319 | tig0043930:+2073 | None:intergenic |
| AAGAGTACCTTTGATGATGG+TGG | 0.585987 | tig0043930:+2139 | None:intergenic |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | tig0043930:+2037 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | tig0043930:+879 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | tig0043930:+1988 | None:intergenic |
| TGATGGTGCTACCAAGACTA+CGG | 0.600087 | tig0043930:-69 | None:intergenic |
| ACGGTCTGTCGTCAACAGAT+AGG | 0.603134 | tig0043930:-396 | Msa1464160:intron |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | tig0043930:+1989 | Msa1464160:intergenic |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | tig0043930:-1042 | Msa1464160:CDS |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | tig0043930:+880 | Msa1464160:intergenic |
| ACTATGGCCACCATCATCAA+AGG | 0.622601 | tig0043930:-2146 | Msa1464160:CDS |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | tig0043930:-883 | Msa1464160:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | tig0043930:+610 | Msa1464160:intergenic |
| TAGACTGAGGAAGCAGATCA+CGG | 0.645853 | tig0043930:-415 | Msa1464160:CDS |
| TCTGCTTCCTCAGTCTACTG+AGG | 0.663997 | tig0043930:+421 | Msa1464160:intergenic |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | tig0043930:-727 | Msa1464160:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | tig0043930:+1974 | Msa1464160:intergenic |
| GCACCATCATAAAGCAACTG+AGG | 0.688596 | tig0043930:+83 | Msa1464160:intergenic |
| AACTCCAACTGAAATAACAG+TGG | 0.694056 | tig0043930:-138 | Msa1464160:CDS |
| ACATCATCCTCAGTAGACTG+AGG | 0.697742 | tig0043930:-428 | Msa1464160:CDS |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | tig0043930:+1792 | Msa1464150:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGGATATTTAATTTAA+AGG | + | tig0043930:370-389 | Msa1464160:intergenic | 10.0% |
| !! | ATAATAAATAAACAAAGTAA+AGG | + | tig0043930:1976-1995 | Msa1464160:intergenic | 10.0% |
| !!! | TTAAAGGATATTTAATTTAA+AGG | + | tig0043930:370-389 | Msa1464160:intergenic | 10.0% |
| !! | ATAATAAATAAACAAAGTAA+AGG | + | tig0043930:1976-1995 | Msa1464160:intergenic | 10.0% |
| !! | TCATAACTATTATGAATTAA+AGG | + | tig0043930:386-405 | Msa1464160:intergenic | 15.0% |
| !! | AATAGATACTTAAAAAGAAA+CGG | - | tig0043930:889-908 | Msa1464160:CDS | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | + | tig0043930:991-1010 | Msa1464160:intergenic | 15.0% |
| !!! | TTAACTCATATTAGTTTAAT+TGG | + | tig0043930:1116-1135 | Msa1464160:intergenic | 15.0% |
| !! | AATATAAATTAATGCTAATG+TGG | - | tig0043930:2050-2069 | Msa1464160:CDS | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | - | tig0043930:2073-2092 | Msa1464160:CDS | 15.0% |
| !! | TCATAACTATTATGAATTAA+AGG | + | tig0043930:386-405 | Msa1464160:intergenic | 15.0% |
| !! | AATAGATACTTAAAAAGAAA+CGG | - | tig0043930:889-908 | Msa1464160:CDS | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | + | tig0043930:991-1010 | Msa1464160:intergenic | 15.0% |
| !!! | TTAACTCATATTAGTTTAAT+TGG | + | tig0043930:1116-1135 | Msa1464160:intergenic | 15.0% |
| !! | AATATAAATTAATGCTAATG+TGG | - | tig0043930:2050-2069 | Msa1464160:CDS | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | - | tig0043930:2073-2092 | Msa1464160:CDS | 15.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | - | tig0043930:394-413 | Msa1464160:intron | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | - | tig0043930:395-414 | Msa1464160:intron | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | - | tig0043930:1511-1530 | Msa1464160:intron | 20.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | - | tig0043930:394-413 | Msa1464160:intron | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | - | tig0043930:395-414 | Msa1464160:intron | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | - | tig0043930:1511-1530 | Msa1464160:intron | 20.0% |
| ! | AGTAAATTTGATCCAAAATC+TGG | + | tig0043930:211-230 | Msa1464160:intergenic | 25.0% |
| ! | TGAACTAAAATTCGAGATAA+GGG | + | tig0043930:456-475 | Msa1464160:intergenic | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | - | tig0043930:1528-1547 | Msa1464160:intron | 25.0% |
| ! | AGTAAATTTGATCCAAAATC+TGG | + | tig0043930:211-230 | Msa1464160:intergenic | 25.0% |
| ! | TGAACTAAAATTCGAGATAA+GGG | + | tig0043930:456-475 | Msa1464160:intergenic | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | - | tig0043930:1528-1547 | Msa1464160:intron | 25.0% |
| GTGAACTAAAATTCGAGATA+AGG | + | tig0043930:457-476 | Msa1464160:intergenic | 30.0% | |
| !! | TGGGTATGATGTTTAAGTTT+TGG | + | tig0043930:573-592 | Msa1464160:intergenic | 30.0% |
| AAACTTAAACATCATACCCA+TGG | - | tig0043930:573-592 | Msa1464160:intron | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | - | tig0043930:1469-1488 | Msa1464160:intron | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | + | tig0043930:1541-1560 | Msa1464160:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | - | tig0043930:1541-1560 | Msa1464160:intron | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | - | tig0043930:1594-1613 | Msa1464160:intron | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | - | tig0043930:1898-1917 | Msa1464160:intron | 30.0% | |
| AGTATGATGTTACAGTTGTA+AGG | + | tig0043930:1925-1944 | Msa1464160:intergenic | 30.0% | |
| GTGAACTAAAATTCGAGATA+AGG | + | tig0043930:457-476 | Msa1464160:intergenic | 30.0% | |
| !! | TGGGTATGATGTTTAAGTTT+TGG | + | tig0043930:573-592 | Msa1464160:intergenic | 30.0% |
| AAACTTAAACATCATACCCA+TGG | - | tig0043930:573-592 | Msa1464160:intron | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | - | tig0043930:1469-1488 | Msa1464160:intron | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | + | tig0043930:1541-1560 | Msa1464160:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | - | tig0043930:1541-1560 | Msa1464160:intron | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | - | tig0043930:1594-1613 | Msa1464160:intron | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | - | tig0043930:1898-1917 | Msa1464160:intron | 30.0% | |
| AGTATGATGTTACAGTTGTA+AGG | + | tig0043930:1925-1944 | Msa1464160:intergenic | 30.0% | |
| CTAGCTCGTTAAAAAAGGTT+TGG | + | tig0043930:101-120 | None:intergenic | 35.0% | |
| TAGTGCTAGCTCGTTAAAAA+AGG | + | tig0043930:106-125 | None:intergenic | 35.0% | |
| ! | TTTTTAACGAGCTAGCACTA+TGG | - | tig0043930:106-125 | Msa1464160:CDS | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | + | tig0043930:135-154 | Msa1464160:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | + | tig0043930:244-263 | Msa1464160:intergenic | 35.0% |
| ! | CTCAGAAGAAATTGACTTCA+AGG | + | tig0043930:489-508 | Msa1464160:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | - | tig0043930:487-506 | Msa1464160:intron | 35.0% | |
| ! | ATGTGAAAGCTTGTTCAGTA+TGG | + | tig0043930:1276-1295 | Msa1464160:intergenic | 35.0% |
| ACAAGCTTTCACATTATGAC+TGG | - | tig0043930:1282-1301 | Msa1464160:intron | 35.0% | |
| CAAGCTTTCACATTATGACT+GGG | - | tig0043930:1283-1302 | Msa1464160:intron | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | - | tig0043930:1329-1348 | Msa1464160:intron | 35.0% | |
| CACTTGAATTTGGAGAATTC+TGG | - | tig0043930:1339-1358 | Msa1464160:intron | 35.0% | |
| TATTAAGCTCAGTGATAGCT+TGG | + | tig0043930:1466-1485 | Msa1464160:intergenic | 35.0% | |
| ATAGTCCAGTAAACATCAAC+AGG | + | tig0043930:1602-1621 | Msa1464160:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | + | tig0043930:1661-1680 | Msa1464160:intergenic | 35.0% | |
| ! | GTTGATCTTTTGACCATAGT+GGG | + | tig0043930:1822-1841 | Msa1464160:intergenic | 35.0% |
| ! | TGTTGATCTTTTGACCATAG+TGG | + | tig0043930:1823-1842 | Msa1464160:intergenic | 35.0% |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | + | tig0043930:1958-1977 | Msa1464160:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | + | tig0043930:2109-2128 | Msa1464160:intergenic | 35.0% | |
| AACTCCAACTGAAATAACAG+TGG | - | tig0043930:2130-2149 | Msa1464160:CDS | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | - | tig0043930:2157-2176 | Msa1464160:exon | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | - | tig0043930:2158-2177 | Msa1464160:exon | 35.0% |
| CTAGCTCGTTAAAAAAGGTT+TGG | + | tig0043930:101-120 | Msa1464160:intergenic | 35.0% | |
| TAGTGCTAGCTCGTTAAAAA+AGG | + | tig0043930:106-125 | Msa1464160:intergenic | 35.0% | |
| ! | TTTTTAACGAGCTAGCACTA+TGG | - | tig0043930:106-125 | Msa1464160:CDS | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | + | tig0043930:135-154 | Msa1464160:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | + | tig0043930:244-263 | Msa1464160:intergenic | 35.0% |
| ! | CTCAGAAGAAATTGACTTCA+AGG | + | tig0043930:489-508 | Msa1464160:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | - | tig0043930:487-506 | Msa1464160:intron | 35.0% | |
| ! | ATGTGAAAGCTTGTTCAGTA+TGG | + | tig0043930:1276-1295 | Msa1464160:intergenic | 35.0% |
| ACAAGCTTTCACATTATGAC+TGG | - | tig0043930:1282-1301 | Msa1464160:intron | 35.0% | |
| CAAGCTTTCACATTATGACT+GGG | - | tig0043930:1283-1302 | Msa1464160:intron | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | - | tig0043930:1329-1348 | Msa1464160:intron | 35.0% | |
| CACTTGAATTTGGAGAATTC+TGG | - | tig0043930:1339-1358 | Msa1464160:intron | 35.0% | |
| TATTAAGCTCAGTGATAGCT+TGG | + | tig0043930:1466-1485 | Msa1464160:intergenic | 35.0% | |
| ATAGTCCAGTAAACATCAAC+AGG | + | tig0043930:1602-1621 | Msa1464160:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | + | tig0043930:1661-1680 | Msa1464160:intergenic | 35.0% | |
| ! | GTTGATCTTTTGACCATAGT+GGG | + | tig0043930:1822-1841 | Msa1464160:intergenic | 35.0% |
| ! | TGTTGATCTTTTGACCATAG+TGG | + | tig0043930:1823-1842 | Msa1464160:intergenic | 35.0% |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | + | tig0043930:1958-1977 | Msa1464160:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | + | tig0043930:2109-2128 | Msa1464160:intergenic | 35.0% | |
| AACTCCAACTGAAATAACAG+TGG | - | tig0043930:2130-2149 | Msa1464160:CDS | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | - | tig0043930:2157-2176 | Msa1464160:exon | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | - | tig0043930:2158-2177 | Msa1464160:exon | 35.0% |
| !! | AAGAGTACCTTTGATGATGG+TGG | + | tig0043930:132-151 | Msa1464160:intergenic | 40.0% |
| GGTCATCAGACATGGTTAAT+GGG | + | tig0043930:190-209 | Msa1464160:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | + | tig0043930:191-210 | Msa1464160:intergenic | 40.0% | |
| CAAAATCTGGTCATCAGACA+TGG | + | tig0043930:198-217 | Msa1464160:intergenic | 40.0% | |
| ! | CATGTCTGATGACCAGATTT+TGG | - | tig0043930:196-215 | Msa1464160:intron | 40.0% |
| AATGTGTGTTGAACGTGCAA+GGG | + | tig0043930:297-316 | Msa1464160:intergenic | 40.0% | |
| ! | ACAGGGTACCAAAGTAAGTT+TGG | - | tig0043930:412-431 | Msa1464160:CDS | 40.0% |
| TGCTTGCTCCAAACTTACTT+TGG | + | tig0043930:423-442 | Msa1464160:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | + | tig0043930:1242-1261 | Msa1464160:intergenic | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | + | tig0043930:1399-1418 | Msa1464160:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | + | tig0043930:1443-1462 | Msa1464160:intergenic | 40.0% |
| TGCTGCTATTGTTACTCAGT+TGG | - | tig0043930:1631-1650 | Msa1464160:intron | 40.0% | |
| AAGCAAGAACTTTCCCACTA+TGG | - | tig0043930:1806-1825 | Msa1464160:CDS | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | - | tig0043930:1941-1960 | Msa1464160:intron | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+TGG | + | tig0043930:2137-2156 | Msa1464160:intergenic | 40.0% |
| ! | GTTCCTCAGTTGCTTTATGA+TGG | - | tig0043930:2182-2201 | Msa1464160:five_prime_UTR | 40.0% |
| !! | AAGAGTACCTTTGATGATGG+TGG | + | tig0043930:132-151 | Msa1464160:intergenic | 40.0% |
| GGTCATCAGACATGGTTAAT+GGG | + | tig0043930:190-209 | Msa1464160:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | + | tig0043930:191-210 | Msa1464160:intergenic | 40.0% | |
| CAAAATCTGGTCATCAGACA+TGG | + | tig0043930:198-217 | Msa1464160:intergenic | 40.0% | |
| ! | CATGTCTGATGACCAGATTT+TGG | - | tig0043930:196-215 | Msa1464160:intron | 40.0% |
| AATGTGTGTTGAACGTGCAA+GGG | + | tig0043930:297-316 | Msa1464160:intergenic | 40.0% | |
| ! | ACAGGGTACCAAAGTAAGTT+TGG | - | tig0043930:412-431 | Msa1464160:CDS | 40.0% |
| TGCTTGCTCCAAACTTACTT+TGG | + | tig0043930:423-442 | Msa1464160:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | + | tig0043930:1242-1261 | Msa1464160:intergenic | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | + | tig0043930:1399-1418 | Msa1464160:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | + | tig0043930:1443-1462 | Msa1464160:intergenic | 40.0% |
| TGCTGCTATTGTTACTCAGT+TGG | - | tig0043930:1631-1650 | Msa1464160:intron | 40.0% | |
| AAGCAAGAACTTTCCCACTA+TGG | - | tig0043930:1806-1825 | Msa1464160:CDS | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | - | tig0043930:1941-1960 | Msa1464160:intron | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+TGG | + | tig0043930:2137-2156 | Msa1464160:intergenic | 40.0% |
| ! | GTTCCTCAGTTGCTTTATGA+TGG | - | tig0043930:2182-2201 | Msa1464160:five_prime_UTR | 40.0% |
| ACTATGGCCACCATCATCAA+AGG | - | tig0043930:122-141 | Msa1464160:CDS | 45.0% | |
| CTTAAGACTCTCCTATCAGC+TGG | - | tig0043930:149-168 | Msa1464160:CDS | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | + | tig0043930:163-182 | Msa1464160:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | + | tig0043930:282-301 | Msa1464160:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | + | tig0043930:298-317 | Msa1464160:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | - | tig0043930:313-332 | Msa1464160:intron | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | + | tig0043930:479-498 | Msa1464160:intergenic | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | + | tig0043930:1239-1258 | Msa1464160:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | + | tig0043930:1391-1410 | Msa1464160:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | + | tig0043930:1392-1411 | Msa1464160:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | - | tig0043930:1556-1575 | Msa1464160:intron | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | + | tig0043930:1572-1591 | Msa1464160:intergenic | 45.0% | |
| ACATCATCCTCAGTAGACTG+AGG | - | tig0043930:1840-1859 | Msa1464160:CDS | 45.0% | |
| TAGACTGAGGAAGCAGATCA+CGG | - | tig0043930:1853-1872 | Msa1464160:CDS | 45.0% | |
| GCACCATCATAAAGCAACTG+AGG | + | tig0043930:2188-2207 | Msa1464160:intergenic | 45.0% | |
| ACTATGGCCACCATCATCAA+AGG | - | tig0043930:122-141 | Msa1464160:CDS | 45.0% | |
| CTTAAGACTCTCCTATCAGC+TGG | - | tig0043930:149-168 | Msa1464160:CDS | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | + | tig0043930:163-182 | Msa1464160:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | + | tig0043930:282-301 | Msa1464160:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | + | tig0043930:298-317 | Msa1464160:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | - | tig0043930:313-332 | Msa1464160:intron | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | + | tig0043930:479-498 | Msa1464160:intergenic | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | + | tig0043930:1239-1258 | Msa1464160:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | + | tig0043930:1391-1410 | Msa1464160:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | + | tig0043930:1392-1411 | Msa1464160:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | - | tig0043930:1556-1575 | Msa1464160:intron | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | + | tig0043930:1572-1591 | Msa1464160:intergenic | 45.0% | |
| ACATCATCCTCAGTAGACTG+AGG | - | tig0043930:1840-1859 | Msa1464160:CDS | 45.0% | |
| TAGACTGAGGAAGCAGATCA+CGG | - | tig0043930:1853-1872 | Msa1464160:CDS | 45.0% | |
| GCACCATCATAAAGCAACTG+AGG | + | tig0043930:2188-2207 | Msa1464160:intergenic | 45.0% | |
| !!! | ATTAATTTTATTAATTATGT+AGG | - | tig0043930:1777-1796 | Msa1464160:intron | 5.0% |
| !!! | TTAATTTTATTAATTATGTA+GGG | - | tig0043930:1778-1797 | Msa1464160:intron | 5.0% |
| !!! | ATATTTTATTTTTTGTTTTA+AGG | - | tig0043930:2006-2025 | Msa1464160:CDS | 5.0% |
| !!! | TATTTTATTTTTTGTTTTAA+GGG | - | tig0043930:2007-2026 | Msa1464160:CDS | 5.0% |
| !!! | ATTAATTTTATTAATTATGT+AGG | - | tig0043930:1777-1796 | Msa1464160:intron | 5.0% |
| !!! | TTAATTTTATTAATTATGTA+GGG | - | tig0043930:1778-1797 | Msa1464160:intron | 5.0% |
| !!! | ATATTTTATTTTTTGTTTTA+AGG | - | tig0043930:2006-2025 | Msa1464160:CDS | 5.0% |
| !!! | TATTTTATTTTTTGTTTTAA+GGG | - | tig0043930:2007-2026 | Msa1464160:CDS | 5.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | + | tig0043930:234-253 | Msa1464160:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | + | tig0043930:283-302 | Msa1464160:intergenic | 50.0% |
| CTGTGTGTGAGTGTCACCAT+GGG | + | tig0043930:592-611 | Msa1464160:intergenic | 50.0% | |
| AGACCCACTTGCCAAATCTG+TGG | - | tig0043930:1385-1404 | Msa1464160:intron | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | + | tig0043930:1433-1452 | Msa1464160:intergenic | 50.0% | |
| TCTGCTTCCTCAGTCTACTG+AGG | + | tig0043930:1850-1869 | Msa1464160:intergenic | 50.0% | |
| ACGGTCTGTCGTCAACAGAT+AGG | - | tig0043930:1872-1891 | Msa1464160:intron | 50.0% | |
| AGCAACTGAGGAACACCCTT+GGG | + | tig0043930:2176-2195 | Msa1464160:intergenic | 50.0% | |
| AAGCAACTGAGGAACACCCT+TGG | + | tig0043930:2177-2196 | Msa1464160:intergenic | 50.0% | |
| ! | TGTGTCACTGTGGACATGTG+TGG | + | tig0043930:234-253 | Msa1464160:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | + | tig0043930:283-302 | Msa1464160:intergenic | 50.0% |
| CTGTGTGTGAGTGTCACCAT+GGG | + | tig0043930:592-611 | Msa1464160:intergenic | 50.0% | |
| AGACCCACTTGCCAAATCTG+TGG | - | tig0043930:1385-1404 | Msa1464160:intron | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | + | tig0043930:1433-1452 | Msa1464160:intergenic | 50.0% | |
| TCTGCTTCCTCAGTCTACTG+AGG | + | tig0043930:1850-1869 | Msa1464160:intergenic | 50.0% | |
| ACGGTCTGTCGTCAACAGAT+AGG | - | tig0043930:1872-1891 | Msa1464160:intron | 50.0% | |
| AGCAACTGAGGAACACCCTT+GGG | + | tig0043930:2176-2195 | Msa1464160:intergenic | 50.0% | |
| AAGCAACTGAGGAACACCCT+TGG | + | tig0043930:2177-2196 | Msa1464160:intergenic | 50.0% | |
| GCTGTGTGTGAGTGTCACCA+TGG | + | tig0043930:593-612 | Msa1464160:intergenic | 55.0% | |
| GTCATGCAAGCCACCAAGTG+AGG | - | tig0043930:1226-1245 | Msa1464160:intron | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | + | tig0043930:1428-1447 | Msa1464160:intergenic | 55.0% | |
| GCTGTGTGTGAGTGTCACCA+TGG | + | tig0043930:593-612 | Msa1464160:intergenic | 55.0% | |
| GTCATGCAAGCCACCAAGTG+AGG | - | tig0043930:1226-1245 | Msa1464160:intron | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | + | tig0043930:1428-1447 | Msa1464160:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043930 | gene | 70 | 2220 | 70 | ID=Msa1464160;Name=Msa1464160 |
| tig0043930 | mRNA | 70 | 2220 | 70 | ID=Msa1464160-mRNA-1;Parent=Msa1464160;Name=Msa1464160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=55|1|0.8|1|1|1|5|0|326 |
| tig0043930 | exon | 70 | 200 | 70 | ID=Msa1464160-mRNA-1:exon:24328;Parent=Msa1464160-mRNA-1 |
| tig0043930 | exon | 397 | 491 | 397 | ID=Msa1464160-mRNA-1:exon:24327;Parent=Msa1464160-mRNA-1 |
| tig0043930 | exon | 618 | 1066 | 618 | ID=Msa1464160-mRNA-1:exon:24326;Parent=Msa1464160-mRNA-1 |
| tig0043930 | exon | 1782 | 1874 | 1782 | ID=Msa1464160-mRNA-1:exon:24325;Parent=Msa1464160-mRNA-1 |
| tig0043930 | exon | 1956 | 2220 | 1956 | ID=Msa1464160-mRNA-1:exon:24324;Parent=Msa1464160-mRNA-1 |
| tig0043930 | five_prime_UTR | 2166 | 2220 | 2166 | ID=Msa1464160-mRNA-1:five_prime_utr;Parent=Msa1464160-mRNA-1 |
| tig0043930 | CDS | 1956 | 2165 | 1956 | ID=Msa1464160-mRNA-1:cds;Parent=Msa1464160-mRNA-1 |
| tig0043930 | CDS | 1782 | 1874 | 1782 | ID=Msa1464160-mRNA-1:cds;Parent=Msa1464160-mRNA-1 |
| tig0043930 | CDS | 618 | 1066 | 618 | ID=Msa1464160-mRNA-1:cds;Parent=Msa1464160-mRNA-1 |
| tig0043930 | CDS | 397 | 491 | 397 | ID=Msa1464160-mRNA-1:cds;Parent=Msa1464160-mRNA-1 |
| tig0043930 | CDS | 70 | 200 | 70 | ID=Msa1464160-mRNA-1:cds;Parent=Msa1464160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
