Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169870 | XP_003590760.1 | 96.721 | 671 | 8 | 1 | 1 | 657 | 1 | 671 | 0.0 | 1323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169870 | sp|Q9SS87|SEOB_ARATH | 31.039 | 712 | 392 | 22 | 23 | 650 | 34 | 730 | 1.30e-93 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169870 | E2FKJ6 | 96.721 | 671 | 8 | 1 | 1 | 657 | 1 | 671 | 0.0 | 1323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002410 | Msa0169870 | 0.828979 | 6.652300e-55 | -8.615850e-47 |
| Msa0012060 | Msa0169870 | 0.821881 | 3.188742e-53 | -8.615850e-47 |
| Msa0017510 | Msa0169870 | 0.801897 | 7.248451e-49 | -8.615850e-47 |
| Msa0029880 | Msa0169870 | 0.954676 | 1.728931e-112 | -8.615850e-47 |
| Msa0029890 | Msa0169870 | 0.972495 | 7.359916e-135 | -8.615850e-47 |
| Msa0029900 | Msa0169870 | 0.866321 | 3.105950e-65 | -8.615850e-47 |
| Msa0029910 | Msa0169870 | 0.810156 | 1.326193e-50 | -8.615850e-47 |
| Msa0077120 | Msa0169870 | 0.814747 | 1.316143e-51 | -8.615850e-47 |
| Msa0077130 | Msa0169870 | 0.861647 | 8.858203e-64 | -8.615850e-47 |
| Msa0077140 | Msa0169870 | 0.976894 | 1.047820e-142 | -8.615850e-47 |
| Msa0123300 | Msa0169870 | 0.811168 | 8.011189e-51 | -8.615850e-47 |
| Msa0125090 | Msa0169870 | 0.904737 | 8.974058e-80 | -8.615850e-47 |
| Msa0125100 | Msa0169870 | 0.920948 | 6.692824e-88 | -8.615850e-47 |
| Msa0125110 | Msa0169870 | 0.828602 | 8.205102e-55 | -8.615850e-47 |
| Msa0157290 | Msa0169870 | 0.801309 | 9.570079e-49 | -8.615850e-47 |
| Msa0169860 | Msa0169870 | 0.938544 | 5.649279e-99 | -8.615850e-47 |
| Msa0169870 | Msa0169920 | 0.827090 | 1.895390e-54 | -8.615850e-47 |
| Msa0169870 | Msa0170090 | 0.870677 | 1.217845e-66 | -8.615850e-47 |
| Msa0169870 | Msa0213040 | 0.803750 | 3.002662e-49 | -8.615850e-47 |
| Msa0169870 | Msa0237310 | 0.806990 | 6.287792e-50 | -8.615850e-47 |
| Msa0169870 | Msa0243100 | 0.805503 | 1.293882e-49 | -8.615850e-47 |
| Msa0169870 | Msa0253340 | 0.801794 | 7.612003e-49 | -8.615850e-47 |
| Msa0169870 | Msa0272730 | 0.807884 | 4.064332e-50 | -8.615850e-47 |
| Msa0169870 | Msa0274730 | 0.808827 | 2.557468e-50 | -8.615850e-47 |
| Msa0169870 | Msa0287650 | 0.802296 | 6.001584e-49 | -8.615850e-47 |
| Msa0169870 | Msa0315530 | 0.807246 | 5.550346e-50 | -8.615850e-47 |
| Msa0169870 | Msa0362680 | 0.818830 | 1.597398e-52 | -8.615850e-47 |
| Msa0169870 | Msa0395790 | 0.806190 | 9.276981e-50 | -8.615850e-47 |
| Msa0169870 | Msa0439970 | 0.814579 | 1.433857e-51 | -8.615850e-47 |
| Msa0169870 | Msa0483650 | 0.811014 | 8.651107e-51 | -8.615850e-47 |
| Msa0169870 | Msa0494670 | 0.806222 | 9.135176e-50 | -8.615850e-47 |
| Msa0169870 | Msa0512230 | 0.802995 | 4.304533e-49 | -8.615850e-47 |
| Msa0169870 | Msa0523460 | 0.825906 | 3.630206e-54 | -8.615850e-47 |
| Msa0169870 | Msa0532970 | 0.802043 | 6.765606e-49 | -8.615850e-47 |
| Msa0169870 | Msa0555020 | 0.806864 | 6.686043e-50 | -8.615850e-47 |
| Msa0169870 | Msa0648880 | 0.834803 | 2.425932e-56 | -8.615850e-47 |
| Msa0169870 | Msa0657610 | 0.802248 | 6.137928e-49 | -8.615850e-47 |
| Msa0169870 | Msa0657970 | 0.802826 | 4.664842e-49 | -8.615850e-47 |
| Msa0169870 | Msa0664850 | 0.806124 | 9.579802e-50 | -8.615850e-47 |
| Msa0169870 | Msa0669440 | 0.800305 | 1.534006e-48 | -8.615850e-47 |
| Msa0169870 | Msa0682620 | 0.809761 | 1.612893e-50 | -8.615850e-47 |
| Msa0169870 | Msa0688070 | 0.814560 | 1.447774e-51 | -8.615850e-47 |
| Msa0169870 | Msa0688770 | 0.807156 | 5.801180e-50 | -8.615850e-47 |
| Msa0169870 | Msa0691380 | 0.811803 | 5.832805e-51 | -8.615850e-47 |
| Msa0169870 | Msa0702350 | 0.824273 | 8.826459e-54 | -8.615850e-47 |
| Msa0169870 | Msa0702680 | 0.822171 | 2.732602e-53 | -8.615850e-47 |
| Msa0169870 | Msa0723000 | 0.801447 | 8.967340e-49 | -8.615850e-47 |
| Msa0169870 | Msa0730270 | 0.804107 | 2.531470e-49 | -8.615850e-47 |
| Msa0169870 | Msa0868020 | 0.803721 | 3.044879e-49 | -8.615850e-47 |
| Msa0169870 | Msa0883060 | 0.831462 | 1.646784e-55 | -8.615850e-47 |
| Msa0169870 | Msa0909140 | 0.804037 | 2.617797e-49 | -8.615850e-47 |
| Msa0169870 | Msa0910430 | 0.815693 | 8.112271e-52 | -8.615850e-47 |
| Msa0169870 | Msa0964840 | 0.805076 | 1.589826e-49 | -8.615850e-47 |
| Msa0169870 | Msa1082500 | 0.803512 | 3.364667e-49 | -8.615850e-47 |
| Msa0169870 | Msa1098560 | 0.805305 | 1.423033e-49 | -8.615850e-47 |
| Msa0169870 | Msa1101140 | 0.810176 | 1.313086e-50 | -8.615850e-47 |
| Msa0169870 | Msa1162550 | -0.811525 | 6.704103e-51 | -8.615850e-47 |
| Msa0169870 | Msa1224480 | 0.816195 | 6.266419e-52 | -8.615850e-47 |
| Msa0169870 | Msa1242220 | 0.834605 | 2.721132e-56 | -8.615850e-47 |
| Msa0169870 | Msa1267610 | 0.802495 | 5.460912e-49 | -8.615850e-47 |
| Msa0169870 | Msa1283860 | 0.806467 | 8.111439e-50 | -8.615850e-47 |
| Msa0169870 | Msa1287440 | 0.823090 | 1.670086e-53 | -8.615850e-47 |
| Msa0169870 | Msa1322860 | 0.816270 | 6.028352e-52 | -8.615850e-47 |
| Msa0169870 | Msa1322890 | 0.842768 | 2.113993e-58 | -8.615850e-47 |
| Msa0169870 | Msa1327050 | 0.805815 | 1.112496e-49 | -8.615850e-47 |
| Msa0169870 | Msa1338520 | 0.803207 | 3.891268e-49 | -8.615850e-47 |
| Msa0169870 | Msa1392260 | 0.805585 | 1.243665e-49 | -8.615850e-47 |
| Msa0169870 | Msa1438250 | 0.802106 | 6.565782e-49 | -8.615850e-47 |
| Msa0169870 | Msa1464160 | 0.878480 | 2.714720e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169870 | MtrunA17_Chr1g0186841 | 96.721 | 671 | 8 | 1 | 1 | 657 | 1 | 671 | 0.0 | 1323 |
| Msa0169870 | MtrunA17_Chr1g0186851 | 58.709 | 666 | 257 | 5 | 9 | 657 | 5 | 669 | 0.0 | 806 |
| Msa0169870 | MtrunA17_Chr1g0186861 | 57.870 | 648 | 256 | 5 | 18 | 649 | 17 | 663 | 0.0 | 761 |
| Msa0169870 | MtrunA17_Chr1g0187041 | 55.105 | 666 | 281 | 6 | 1 | 650 | 1 | 664 | 0.0 | 724 |
| Msa0169870 | MtrunA17_Chr1g0186911 | 57.473 | 562 | 224 | 4 | 102 | 649 | 1 | 561 | 0.0 | 654 |
| Msa0169870 | MtrunA17_Chr1g0165791 | 38.117 | 669 | 375 | 12 | 20 | 656 | 24 | 685 | 5.49e-148 | 446 |
| Msa0169870 | MtrunA17_Chr7g0226571 | 31.389 | 720 | 414 | 17 | 1 | 649 | 1 | 711 | 7.19e-103 | 329 |
| Msa0169870 | MtrunA17_Chr1g0186981 | 33.623 | 690 | 377 | 22 | 6 | 654 | 19 | 668 | 2.70e-101 | 323 |
| Msa0169870 | MtrunA17_Chr1g0187001 | 32.889 | 675 | 382 | 18 | 13 | 653 | 3 | 640 | 1.28e-100 | 321 |
| Msa0169870 | MtrunA17_Chr8g0381301 | 31.903 | 699 | 391 | 21 | 23 | 648 | 17 | 703 | 1.01e-96 | 312 |
| Msa0169870 | MtrunA17_Chr3g0116601 | 31.277 | 697 | 398 | 19 | 19 | 647 | 21 | 704 | 1.95e-96 | 311 |
| Msa0169870 | MtrunA17_Chr1g0186991 | 32.787 | 671 | 373 | 22 | 21 | 648 | 31 | 666 | 2.85e-95 | 308 |
| Msa0169870 | MtrunA17_Chr1g0186901 | 62.069 | 87 | 31 | 1 | 18 | 102 | 17 | 103 | 1.75e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169870 | AT3G01680.1 | 31.039 | 712 | 392 | 22 | 23 | 650 | 34 | 730 | 1.32e-94 | 308 |
| Msa0169870 | AT3G01670.1 | 26.271 | 708 | 418 | 20 | 23 | 647 | 134 | 820 | 3.84e-58 | 210 |
| Msa0169870 | AT3G01670.2 | 26.412 | 708 | 417 | 21 | 23 | 647 | 158 | 844 | 4.71e-58 | 210 |
| Msa0169870 | AT1G67790.1 | 23.199 | 694 | 423 | 27 | 24 | 645 | 9 | 664 | 6.48e-34 | 138 |
Find 126 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATCATCCATTGTAAA+TGG | 0.156346 | 1_4:-53336764 | None:intergenic |
| TCTGCATTTGCACTTGAATT+TGG | 0.183170 | 1_4:+53333950 | Msa0169870:CDS |
| AAATTCCTGTTGATGTTTAC+TGG | 0.193634 | 1_4:+53334215 | Msa0169870:CDS |
| AAAACCTCGTAAGTCGATTT+TGG | 0.196977 | 1_4:+53337484 | Msa0169870:CDS |
| CACTTGAATTTGGTGAATTC+TGG | 0.203329 | 1_4:+53333960 | Msa0169870:CDS |
| TTCCATTTGATCAAGTCTTA+TGG | 0.239151 | 1_4:+53336728 | Msa0169870:CDS |
| AGTAAATTTGATCTAAAATT+TGG | 0.244179 | 1_4:-53332827 | None:intergenic |
| TGGTCATCAGACATGGTTAA+TGG | 0.245357 | 1_4:-53332807 | None:intergenic |
| CATTGAATTTATACTTGAAT+TGG | 0.266351 | 1_4:+53334132 | Msa0169870:CDS |
| TTGTGTCATACCTATCATTA+AGG | 0.284079 | 1_4:-53334159 | None:intergenic |
| CAATGCAAATGCAAAACATT+AGG | 0.286937 | 1_4:+53337887 | Msa0169870:CDS |
| CTTGAAATTCCTATTGTTGC+TGG | 0.287322 | 1_4:+53337780 | Msa0169870:CDS |
| TTACTGGGTCTTGTGGTCTT+TGG | 0.296308 | 1_4:+53337928 | Msa0169870:three_prime_UTR |
| CACAAAGGTTGTTCCTGCTT+TGG | 0.316333 | 1_4:+53334177 | Msa0169870:CDS |
| TATCACTGAGCTTAATAGTT+TGG | 0.318395 | 1_4:+53334090 | Msa0169870:CDS |
| ATGAACAATACAAGATTGTT+TGG | 0.318857 | 1_4:+53336510 | Msa0169870:CDS |
| AATGCAAATGCAAAACATTA+GGG | 0.324845 | 1_4:+53337888 | Msa0169870:CDS |
| AATTGGATTACCTTAATGAT+AGG | 0.331280 | 1_4:+53334149 | Msa0169870:CDS |
| CACAGTGGTGAACTAAAATT+CGG | 0.342006 | 1_4:-53333080 | None:intergenic |
| AATGTGAGGTGGAATAAAAT+TGG | 0.354807 | 1_4:-53338310 | None:intergenic |
| CTCAGAAGAAATTGACTTCA+AGG | 0.363511 | 1_4:-53333105 | None:intergenic |
| TTTCAGCAAAGCCACAGATT+TGG | 0.367784 | 1_4:-53334017 | None:intergenic |
| GTGGTCTTTGGTTCGAGACT+TGG | 0.370433 | 1_4:+53337940 | Msa0169870:three_prime_UTR |
| GTAACAGTTTCTTAAGCTCT+TGG | 0.377322 | 1_4:-53334726 | None:intergenic |
| GTGGGACATTCAGAACCTTT+TGG | 0.381423 | 1_4:+53338015 | Msa0169870:three_prime_UTR |
| TGCTGCTATTGTTACTCAGT+TGG | 0.382885 | 1_4:+53334252 | Msa0169870:CDS |
| GGTCATCAGACATGGTTAAT+GGG | 0.399280 | 1_4:-53332806 | None:intergenic |
| ATGAAAATCTCCATGGTACT+AGG | 0.402817 | 1_4:-53337837 | None:intergenic |
| GTGAACTAAAATTCGGGATA+AGG | 0.403542 | 1_4:-53333073 | None:intergenic |
| GTTCCTCAGTTGCTTTATGA+TGG | 0.403939 | 1_4:+53334802 | Msa0169870:CDS |
| TCAAGTTCATTAATGAAGAA+TGG | 0.407316 | 1_4:+53336639 | Msa0169870:CDS |
| TTTCATCATCCATTGTAAAT+GGG | 0.417223 | 1_4:-53336763 | None:intergenic |
| CTGTGGCTGAATTTGAGAAA+TGG | 0.418335 | 1_4:+53337670 | Msa0169870:CDS |
| GATCAAGTCTTATGGAATCA+AGG | 0.421741 | 1_4:+53336736 | Msa0169870:CDS |
| GAATTCAGAAGGACAGGAAC+TGG | 0.428024 | 1_4:+53336789 | Msa0169870:CDS |
| GGTAACTTTCCAGCAACAAT+AGG | 0.436825 | 1_4:-53337789 | None:intergenic |
| CAGCAACAATAGGAATTTCA+AGG | 0.438861 | 1_4:-53337779 | None:intergenic |
| ATAGTCCAGTAAACATCAAC+AGG | 0.440292 | 1_4:-53334220 | None:intergenic |
| GTGTGAAAGCTTGTTCAGTA+TGG | 0.441244 | 1_4:-53333894 | None:intergenic |
| TTCCATAAGACTTGATCAAA+TGG | 0.441990 | 1_4:-53336730 | None:intergenic |
| AGCACCACTGTTATTTCAGT+TGG | 0.443068 | 1_4:-53334754 | None:intergenic |
| CAAGTTCATTAATGAAGAAT+GGG | 0.444482 | 1_4:+53336640 | Msa0169870:CDS |
| GGATTCCAATCGTCGAAGAA+TGG | 0.446974 | 1_4:+53336531 | Msa0169870:CDS |
| TGCTTGCTCCAAGCTTACTT+TGG | 0.448220 | 1_4:-53333039 | None:intergenic |
| TTGTGTGCAATTTCCTCACT+TGG | 0.452426 | 1_4:-53333860 | None:intergenic |
| TCTCAATCTCACCAGCTGAT+AGG | 0.452782 | 1_4:-53332779 | None:intergenic |
| CTGCAGGCTTTGCTAGGATC+GGG | 0.454271 | 1_4:-53334045 | None:intergenic |
| GAATTGCTGCAGGCTTTGCT+AGG | 0.467942 | 1_4:-53334051 | None:intergenic |
| TGTGCAATTTCCTCACTTGG+TGG | 0.473616 | 1_4:-53333857 | None:intergenic |
| AAAGATGTTGTTATCAAGAA+GGG | 0.481066 | 1_4:+53337693 | Msa0169870:CDS |
| TCCATGGTACTAGGACAATC+AGG | 0.486441 | 1_4:-53337828 | None:intergenic |
| ACAAGCTTTCACACTATGAC+TGG | 0.487294 | 1_4:+53333903 | Msa0169870:CDS |
| AAGCAAGAACTTTCCCACTA+TGG | 0.489618 | 1_4:+53334427 | Msa0169870:CDS |
| TCGTTCCATTCTTCGACGAT+TGG | 0.491649 | 1_4:-53336536 | None:intergenic |
| GTTGGATCCATTCTTTGTCA+TGG | 0.491940 | 1_4:-53337368 | None:intergenic |
| TTGCATACTTAGTGAACTGT+TGG | 0.493419 | 1_4:-53337386 | None:intergenic |
| TGAACTAAAATTCGGGATAA+GGG | 0.496533 | 1_4:-53333072 | None:intergenic |
| AGCAACTGAGGAACACCCTT+GGG | 0.498957 | 1_4:-53334793 | None:intergenic |
| ACAGGGTACCAAAGTAAGCT+TGG | 0.502353 | 1_4:+53333031 | Msa0169870:intron |
| CTTGAAGTCAATTTCTTCTG+AGG | 0.504447 | 1_4:+53333106 | Msa0169870:CDS |
| GAAAGATGTTGTTATCAAGA+AGG | 0.504611 | 1_4:+53337692 | Msa0169870:CDS |
| CTTAAGAGTACCTTTGATGA+TGG | 0.504661 | 1_4:-53332751 | None:intergenic |
| AAATAAGAATTCAGAAGGAC+AGG | 0.505393 | 1_4:+53336783 | Msa0169870:CDS |
| ACGGCGGCCATGACAAAGAA+TGG | 0.505835 | 1_4:+53337361 | Msa0169870:CDS |
| AAAGATACGAACCGTAGTCT+TGG | 0.515674 | 1_4:-53334830 | None:intergenic |
| CAGAATGTCGAAAACATAGC+TGG | 0.516066 | 1_4:+53336614 | Msa0169870:CDS |
| TATTAAGCTCAGTGATAGCT+TGG | 0.519222 | 1_4:-53334084 | None:intergenic |
| GCTGCAGGCTTTGCTAGGAT+CGG | 0.522772 | 1_4:-53334046 | None:intergenic |
| CAAGGCTTTCCCATTTACAA+TGG | 0.524969 | 1_4:+53336754 | Msa0169870:CDS |
| TCTGTTGTGTTGAGTGGTCA+TGG | 0.529738 | 1_4:+53337630 | Msa0169870:CDS |
| TTTGTGGTGTTTAGTCCTCA+AGG | 0.535506 | 1_4:+53336683 | Msa0169870:CDS |
| TTGTGTTGCACCTTTCCTTG+AGG | 0.539203 | 1_4:-53336698 | None:intergenic |
| TGTTTCTACTCTAGATGTCA+CGG | 0.542607 | 1_4:+53336439 | Msa0169870:CDS |
| GTGGTGTAGTCTTGAAGCGT+TGG | 0.543839 | 1_4:+53338129 | Msa0169870:three_prime_UTR |
| CGTGGAACATAACCACCAAA+AGG | 0.543988 | 1_4:-53338030 | None:intergenic |
| GAAAATGTGCTTGTTCTGCT+CGG | 0.546825 | 1_4:-53337334 | None:intergenic |
| TCCTGATTGTCCTAGTACCA+TGG | 0.550611 | 1_4:+53337827 | Msa0169870:CDS |
| ATGAGTGACACGAGCAACAC+TGG | 0.552524 | 1_4:-53337745 | None:intergenic |
| GTCAACATAGAAGAGTTCAA+TGG | 0.556338 | 1_4:-53337451 | None:intergenic |
| CATTGTTGACAGTGTTGTGC+AGG | 0.556795 | 1_4:+53332932 | Msa0169870:CDS |
| GTCCCTGGCTCAATGTGAGG+TGG | 0.560739 | 1_4:-53338321 | None:intergenic |
| CTTAAGACACTCCTATCAGC+TGG | 0.567003 | 1_4:+53332768 | Msa0169870:CDS |
| CAACAGATGGTCCTTTGCTA+AGG | 0.567238 | 1_4:-53337614 | None:intergenic |
| AACTTCTTGTGTCACTACAT+CGG | 0.569484 | 1_4:-53337550 | None:intergenic |
| CAATGTGTGTTGAACGTGCA+AGG | 0.571029 | 1_4:-53332914 | None:intergenic |
| AAGCAACTGAGGAACACCCT+TGG | 0.576598 | 1_4:-53334794 | None:intergenic |
| ACAGTGGTGAACTAAAATTC+GGG | 0.577031 | 1_4:-53333079 | None:intergenic |
| TCATATGCAAGCTCCAAAGC+AGG | 0.578263 | 1_4:-53334190 | None:intergenic |
| TGATGAAATAAGAATTCAGA+AGG | 0.583273 | 1_4:+53336778 | Msa0169870:CDS |
| TAAAATTTGGTCATCAGACA+TGG | 0.584340 | 1_4:-53332814 | None:intergenic |
| AAGAGTACCTTTGATGATGG+TGG | 0.585987 | 1_4:-53332748 | None:intergenic |
| ATAGCTAATGAAAATCTCCA+TGG | 0.586541 | 1_4:-53337844 | None:intergenic |
| TGTGTCACTGTGGACATGTG+TGG | 0.587756 | 1_4:-53332850 | None:intergenic |
| AAAGCCACAGATTTGGCAAG+TGG | 0.592499 | 1_4:-53334010 | None:intergenic |
| GTGCAAGGGTATTCTGAGCA+AGG | 0.592657 | 1_4:-53332899 | None:intergenic |
| TGACCACTCAACACAACAGA+TGG | 0.592856 | 1_4:-53337627 | None:intergenic |
| CAAGCTTTCACACTATGACT+GGG | 0.595446 | 1_4:+53333904 | Msa0169870:CDS |
| TGATGGTGCTACCAAGACTA+CGG | 0.600087 | 1_4:+53334819 | Msa0169870:CDS |
| CGCTCCAAAATCGACTTACG+AGG | 0.601393 | 1_4:-53337488 | None:intergenic |
| GGTGTTTAGTCCTCAAGGAA+AGG | 0.602732 | 1_4:+53336688 | Msa0169870:CDS |
| ACGGTCTGTCGTCAACAGAT+AGG | 0.603134 | 1_4:+53334493 | Msa0169870:CDS |
| TGCAAGGGTATTCTGAGCAA+GGG | 0.608420 | 1_4:-53332898 | None:intergenic |
| TCCGTCCCTGGCTCAATGTG+AGG | 0.608740 | 1_4:-53338324 | None:intergenic |
| GAGTAAGATGCCATGGTATG+TGG | 0.608793 | 1_4:+53336589 | Msa0169870:CDS |
| GTCATGCAAGCCACCAAGTG+AGG | 0.613274 | 1_4:+53333847 | Msa0169870:CDS |
| CAAAACATTAGGGTTTGACG+TGG | 0.614141 | 1_4:+53337898 | Msa0169870:exon |
| TGAACTCTTCTATGTTGACA+AGG | 0.614303 | 1_4:+53337455 | Msa0169870:CDS |
| AAGCCACAGATTTGGCAAGT+GGG | 0.620286 | 1_4:-53334009 | None:intergenic |
| ACTATGGCCACCATCATCAA+AGG | 0.622601 | 1_4:+53332741 | Msa0169870:exon |
| AGACCCACTTGCCAAATCTG+TGG | 0.631402 | 1_4:+53334006 | Msa0169870:CDS |
| AAACTTACGATTCAGTGATG+AGG | 0.634674 | 1_4:-53334279 | None:intergenic |
| ACATTCTGCACCACATACCA+TGG | 0.636446 | 1_4:-53336599 | None:intergenic |
| GGTTGGGCTCTCCTTAGCAA+AGG | 0.640640 | 1_4:+53337603 | Msa0169870:CDS |
| TAGACTGAGGAAGCAGATCA+CGG | 0.645853 | 1_4:+53334474 | Msa0169870:CDS |
| GATCTCGTGAATAAGAGTGT+GGG | 0.653673 | 1_4:+53337997 | Msa0169870:three_prime_UTR |
| GGACCATCTGTTGTGTTGAG+TGG | 0.654679 | 1_4:+53337624 | Msa0169870:CDS |
| TGATCTCGTGAATAAGAGTG+TGG | 0.660825 | 1_4:+53337996 | Msa0169870:three_prime_UTR |
| TCTGCTTCCTCAGTCTACTG+AGG | 0.663997 | 1_4:-53334468 | None:intergenic |
| TAATGATAGGTATGACACAA+AGG | 0.667392 | 1_4:+53334162 | Msa0169870:CDS |
| TACAACAATTCTCAAAACTG+TGG | 0.669361 | 1_4:+53337653 | Msa0169870:CDS |
| AATGTGTGTTGAACGTGCAA+GGG | 0.673789 | 1_4:-53332913 | None:intergenic |
| GCACCATCATAAAGCAACTG+AGG | 0.688596 | 1_4:-53334805 | None:intergenic |
| AACTCCAACTGAAATAACAG+TGG | 0.694056 | 1_4:+53334750 | Msa0169870:CDS |
| ACATCATCCTCAGTAGACTG+AGG | 0.697742 | 1_4:+53334461 | Msa0169870:CDS |
| ATTGACTTCAAGGTGCACAG+TGG | 0.759523 | 1_4:-53333095 | None:intergenic |
| TTCTACTCTAGATGTCACGG+AGG | 0.776640 | 1_4:+53336442 | Msa0169870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGGATATTTAATTTAA+AGG | - | chr1_4:53332989-53333008 | None:intergenic | 10.0% |
| !! | AATAGATACTTAAAAAAAAA+CGG | + | chr1_4:53333510-53333529 | Msa0169870:intron | 10.0% |
| !! | ATAATAAATAAACAAAGTAA+AGG | - | chr1_4:53334597-53334616 | None:intergenic | 10.0% |
| !!! | CATATTTTATTTTTGTTTTA+AGG | + | chr1_4:53334626-53334645 | Msa0169870:intron | 10.0% |
| !!! | AAATTTCTAATATTTTTCTT+TGG | - | chr1_4:53335158-53335177 | None:intergenic | 10.0% |
| !! | TAAACATAAAAAAAATCATA+CGG | + | chr1_4:53335698-53335717 | Msa0169870:intron | 10.0% |
| !!! | TTTAATTAAAAAGTATTATG+TGG | + | chr1_4:53335825-53335844 | Msa0169870:intron | 10.0% |
| !! | ACAAATTAATAAAAATTAAG+AGG | - | chr1_4:53336363-53336382 | None:intergenic | 10.0% |
| !!! | AGTAAATTTGATCTAAAATT+TGG | - | chr1_4:53332830-53332849 | None:intergenic | 15.0% |
| !! | TCATAACTATTATGAATTAA+AGG | - | chr1_4:53333005-53333024 | None:intergenic | 15.0% |
| !! | TAGAAATTAACATAATAAAG+TGG | - | chr1_4:53333612-53333631 | None:intergenic | 15.0% |
| !!! | TTAACACATATTAGTTTAAT+TGG | - | chr1_4:53333737-53333756 | None:intergenic | 15.0% |
| !! | AATATAAATTAATGCTAATG+TGG | + | chr1_4:53334670-53334689 | Msa0169870:intron | 15.0% |
| !! | TACATATATTATTTCAGATA+CGG | + | chr1_4:53334693-53334712 | Msa0169870:intron | 15.0% |
| !! | AGAAAAATATTAGAAATTTG+TGG | + | chr1_4:53335159-53335178 | Msa0169870:intron | 15.0% |
| !!! | TGCTTTTAAATATTTTTTGT+TGG | - | chr1_4:53335762-53335781 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTTTAAACATGT+AGG | - | chr1_4:53336008-53336027 | None:intergenic | 15.0% |
| !! | ATAAATTCTAATGAAATTGA+TGG | + | chr1_4:53336099-53336118 | Msa0169870:intron | 15.0% |
| !!! | TTACAATCATATTTTGATTT+TGG | + | chr1_4:53337125-53337144 | Msa0169870:intron | 15.0% |
| !!! | TCTTTATTTTACAACATAAA+TGG | - | chr1_4:53338056-53338075 | None:intergenic | 15.0% |
| !!! | TAATAGTTATGAATTTTGAC+AGG | + | chr1_4:53333013-53333032 | Msa0169870:intron | 20.0% |
| !!! | AATAGTTATGAATTTTGACA+GGG | + | chr1_4:53333014-53333033 | Msa0169870:intron | 20.0% |
| !! | CATTGAATTTATACTTGAAT+TGG | + | chr1_4:53334132-53334151 | Msa0169870:CDS | 20.0% |
| !!! | TAGAAAAGTTGATATCAATT+TGG | + | chr1_4:53335322-53335341 | Msa0169870:intron | 20.0% |
| !!! | TCTACTTTTCCTTTAAAAAT+TGG | - | chr1_4:53335411-53335430 | None:intergenic | 20.0% |
| !! | TATCATTTCTCATTCTTTAA+AGG | + | chr1_4:53335533-53335552 | Msa0169870:intron | 20.0% |
| !! | ATCATTTCTCATTCTTTAAA+GGG | + | chr1_4:53335534-53335553 | Msa0169870:intron | 20.0% |
| !! | TGAATTCAACAAACTTTAAA+TGG | - | chr1_4:53335727-53335746 | None:intergenic | 20.0% |
| !! | AAGTAATCAAGTTAAAAATC+TGG | + | chr1_4:53335916-53335935 | Msa0169870:intron | 20.0% |
| !! | TAAATAGATAAGAAGAGAAA+AGG | - | chr1_4:53336153-53336172 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTCATATTTATCT+CGG | - | chr1_4:53336242-53336261 | None:intergenic | 20.0% |
| !! | CGAGATAAATATGAAAAAAA+GGG | + | chr1_4:53336240-53336259 | Msa0169870:intron | 20.0% |
| !!! | TATTATTAGTGTTTTGTTGA+TGG | + | chr1_4:53336296-53336315 | Msa0169870:intron | 20.0% |
| !! | TTTCATGAAATTTACATGTT+TGG | - | chr1_4:53337005-53337024 | None:intergenic | 20.0% |
| !! | CGTCTTAAAAAAATGTTATT+GGG | + | chr1_4:53337963-53337982 | Msa0169870:three_prime_UTR | 20.0% |
| !! | TGTGTATGATGTTTATGTTT+TGG | - | chr1_4:53333192-53333211 | None:intergenic | 25.0% |
| ! | AAACATAAACATCATACACA+TGG | + | chr1_4:53333192-53333211 | Msa0169870:intron | 25.0% |
| ! | AATTGGATTACCTTAATGAT+AGG | + | chr1_4:53334149-53334168 | Msa0169870:CDS | 25.0% |
| ! | AAAATGAGTACAAAACTTTG+TGG | + | chr1_4:53334928-53334947 | Msa0169870:intron | 25.0% |
| !!! | TCACAAAAGTTGTTGATTTT+TGG | - | chr1_4:53335382-53335401 | None:intergenic | 25.0% |
| !! | TGACAACTACCAATTTTTAA+AGG | + | chr1_4:53335399-53335418 | Msa0169870:intron | 25.0% |
| ! | TTTAAAGGGACTTATCAATT+TGG | + | chr1_4:53335548-53335567 | Msa0169870:intron | 25.0% |
| !!! | TGATTACTTTTGTGACTTTT+TGG | - | chr1_4:53335905-53335924 | None:intergenic | 25.0% |
| ! | GAAATTAGTACTATACGAAA+AGG | + | chr1_4:53335938-53335957 | Msa0169870:intron | 25.0% |
| !! | TAATTTACGAAAAGTATGTG+TGG | - | chr1_4:53335984-53336003 | None:intergenic | 25.0% |
| !! | TTTTTCATATTTATCTCGGT+TGG | - | chr1_4:53336238-53336257 | None:intergenic | 25.0% |
| ! | CCGAGATAAATATGAAAAAA+AGG | + | chr1_4:53336239-53336258 | Msa0169870:intron | 25.0% |
| ! | ATGAACAATACAAGATTGTT+TGG | + | chr1_4:53336510-53336529 | Msa0169870:CDS | 25.0% |
| !! | GCAAGAAATTCGATATTTTA+AGG | + | chr1_4:53336567-53336586 | Msa0169870:CDS | 25.0% |
| ! | TCAAGTTCATTAATGAAGAA+TGG | + | chr1_4:53336639-53336658 | Msa0169870:CDS | 25.0% |
| ! | CAAGTTCATTAATGAAGAAT+GGG | + | chr1_4:53336640-53336659 | Msa0169870:CDS | 25.0% |
| ! | TTTCATCATCCATTGTAAAT+GGG | - | chr1_4:53336766-53336785 | None:intergenic | 25.0% |
| ! | ATTTCATCATCCATTGTAAA+TGG | - | chr1_4:53336767-53336786 | None:intergenic | 25.0% |
| ! | TGATGAAATAAGAATTCAGA+AGG | + | chr1_4:53336778-53336797 | Msa0169870:CDS | 25.0% |
| ! | TTACAAAAATGAAACTGGTT+GGG | + | chr1_4:53337587-53337606 | Msa0169870:CDS | 25.0% |
| ! | AAAGATGTTGTTATCAAGAA+GGG | + | chr1_4:53337693-53337712 | Msa0169870:CDS | 25.0% |
| ! | AATGCAAATGCAAAACATTA+GGG | + | chr1_4:53337888-53337907 | Msa0169870:CDS | 25.0% |
| ! | GCGTCTTAAAAAAATGTTAT+TGG | + | chr1_4:53337962-53337981 | Msa0169870:three_prime_UTR | 25.0% |
| ! | CTTTGTAAACCCAAAAATAA+TGG | + | chr1_4:53338077-53338096 | Msa0169870:three_prime_UTR | 25.0% |
| !!! | AACACAACACCATTATTTTT+GGG | - | chr1_4:53338089-53338108 | None:intergenic | 25.0% |
| TAAAATTTGGTCATCAGACA+TGG | - | chr1_4:53332817-53332836 | None:intergenic | 30.0% | |
| TGAACTAAAATTCGGGATAA+GGG | - | chr1_4:53333075-53333094 | None:intergenic | 30.0% | |
| TATCACTGAGCTTAATAGTT+TGG | + | chr1_4:53334090-53334109 | Msa0169870:CDS | 30.0% | |
| TTGTGTCATACCTATCATTA+AGG | - | chr1_4:53334162-53334181 | None:intergenic | 30.0% | |
| TAATGATAGGTATGACACAA+AGG | + | chr1_4:53334162-53334181 | Msa0169870:CDS | 30.0% | |
| AAATTCCTGTTGATGTTTAC+TGG | + | chr1_4:53334215-53334234 | Msa0169870:CDS | 30.0% | |
| GTAAATTTCTCGATCTCTAA+CGG | + | chr1_4:53334519-53334538 | Msa0169870:intron | 30.0% | |
| AGTATGATGTTACAGTTGTA+AGG | - | chr1_4:53334546-53334565 | None:intergenic | 30.0% | |
| ATTATTATGACACGTGTTTC+TGG | - | chr1_4:53335220-53335239 | None:intergenic | 30.0% | |
| AGAAACACGTGTCATAATAA+TGG | + | chr1_4:53335219-53335238 | Msa0169870:intron | 30.0% | |
| GAAACACGTGTCATAATAAT+GGG | + | chr1_4:53335220-53335239 | Msa0169870:intron | 30.0% | |
| !! | TGTGACTTTTTGGTGTATTA+TGG | - | chr1_4:53335895-53335914 | None:intergenic | 30.0% |
| ! | TGTTAGCTTAATGCTTAGAA+TGG | - | chr1_4:53336334-53336353 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAAACCGTGC+AGG | + | chr1_4:53336373-53336392 | Msa0169870:intron | 30.0% |
| TTCCATTTGATCAAGTCTTA+TGG | + | chr1_4:53336728-53336747 | Msa0169870:CDS | 30.0% | |
| TTCCATAAGACTTGATCAAA+TGG | - | chr1_4:53336733-53336752 | None:intergenic | 30.0% | |
| AAATAAGAATTCAGAAGGAC+AGG | + | chr1_4:53336783-53336802 | Msa0169870:CDS | 30.0% | |
| TTAACCACAACATTTCCATA+TGG | + | chr1_4:53336834-53336853 | Msa0169870:intron | 30.0% | |
| TAACCACAACATTTCCATAT+GGG | + | chr1_4:53336835-53336854 | Msa0169870:intron | 30.0% | |
| CGAAAATTTACTTACCCATA+TGG | - | chr1_4:53336852-53336871 | None:intergenic | 30.0% | |
| AACATATTTCACAACTGTGA+AGG | - | chr1_4:53336883-53336902 | None:intergenic | 30.0% | |
| ! | TGTAAAGACCGTTGAATTTT+GGG | + | chr1_4:53336911-53336930 | Msa0169870:intron | 30.0% |
| ! | AACAAGCACATTTTCTTCTA+CGG | + | chr1_4:53337342-53337361 | Msa0169870:CDS | 30.0% |
| !! | ATCGGTTGTTTTGTGAATTT+TGG | - | chr1_4:53337535-53337554 | None:intergenic | 30.0% |
| CTGTCTTACAAAAATGAAAC+TGG | + | chr1_4:53337582-53337601 | Msa0169870:CDS | 30.0% | |
| CTTACAAAAATGAAACTGGT+TGG | + | chr1_4:53337586-53337605 | Msa0169870:CDS | 30.0% | |
| TACAACAATTCTCAAAACTG+TGG | + | chr1_4:53337653-53337672 | Msa0169870:CDS | 30.0% | |
| GAAAGATGTTGTTATCAAGA+AGG | + | chr1_4:53337692-53337711 | Msa0169870:CDS | 30.0% | |
| ATAGCTAATGAAAATCTCCA+TGG | - | chr1_4:53337847-53337866 | None:intergenic | 30.0% | |
| !!! | CATTTGCATTGGTTTTATTG+TGG | - | chr1_4:53337878-53337897 | None:intergenic | 30.0% |
| ! | CTAATGTTTTGCATTTGCAT+TGG | - | chr1_4:53337889-53337908 | None:intergenic | 30.0% |
| CAATGCAAATGCAAAACATT+AGG | + | chr1_4:53337887-53337906 | Msa0169870:CDS | 30.0% | |
| ! | ATTTTACAACATAAATGGCG+TGG | - | chr1_4:53338051-53338070 | None:intergenic | 30.0% |
| ! | CAACACAACACCATTATTTT+TGG | - | chr1_4:53338090-53338109 | None:intergenic | 30.0% |
| !!! | GTGTTGTTTTCTATGTATTG+TGG | + | chr1_4:53338104-53338123 | Msa0169870:three_prime_UTR | 30.0% |
| ! | TTTTCTATGTATTGTGGTTG+TGG | + | chr1_4:53338110-53338129 | Msa0169870:three_prime_UTR | 30.0% |
| AATGTGAGGTGGAATAAAAT+TGG | - | chr1_4:53338313-53338332 | None:intergenic | 30.0% | |
| CTAGCTCGTTAAAAAAGGTT+TGG | - | chr1_4:53332720-53332739 | None:intergenic | 35.0% | |
| TAGTGCTAGCTCGTTAAAAA+AGG | - | chr1_4:53332725-53332744 | None:intergenic | 35.0% | |
| ! | TTTTTAACGAGCTAGCACTA+TGG | + | chr1_4:53332725-53332744 | Msa0169870:exon | 35.0% |
| !! | CTTAAGAGTACCTTTGATGA+TGG | - | chr1_4:53332754-53332773 | None:intergenic | 35.0% |
| !! | CATCAAATTTTGTGTCACTG+TGG | - | chr1_4:53332863-53332882 | None:intergenic | 35.0% |
| GTGAACTAAAATTCGGGATA+AGG | - | chr1_4:53333076-53333095 | None:intergenic | 35.0% | |
| ACAGTGGTGAACTAAAATTC+GGG | - | chr1_4:53333082-53333101 | None:intergenic | 35.0% | |
| CACAGTGGTGAACTAAAATT+CGG | - | chr1_4:53333083-53333102 | None:intergenic | 35.0% | |
| ! | CTCAGAAGAAATTGACTTCA+AGG | - | chr1_4:53333108-53333127 | None:intergenic | 35.0% |
| CTTGAAGTCAATTTCTTCTG+AGG | + | chr1_4:53333106-53333125 | Msa0169870:CDS | 35.0% | |
| TCTGCATTTGCACTTGAATT+TGG | + | chr1_4:53333950-53333969 | Msa0169870:CDS | 35.0% | |
| ! | CACTTGAATTTGGTGAATTC+TGG | + | chr1_4:53333960-53333979 | Msa0169870:CDS | 35.0% |
| TATTAAGCTCAGTGATAGCT+TGG | - | chr1_4:53334087-53334106 | None:intergenic | 35.0% | |
| ATAGTCCAGTAAACATCAAC+AGG | - | chr1_4:53334223-53334242 | None:intergenic | 35.0% | |
| AAACTTACGATTCAGTGATG+AGG | - | chr1_4:53334282-53334301 | None:intergenic | 35.0% | |
| ! | GTTGATCTTTTGACCATAGT+GGG | - | chr1_4:53334443-53334462 | None:intergenic | 35.0% |
| ! | TGTTGATCTTTTGACCATAG+TGG | - | chr1_4:53334444-53334463 | None:intergenic | 35.0% |
| !! | AAAGGTGTTTGAATCCTCAT+CGG | - | chr1_4:53334579-53334598 | None:intergenic | 35.0% |
| GTAACAGTTTCTTAAGCTCT+TGG | - | chr1_4:53334729-53334748 | None:intergenic | 35.0% | |
| AACTCCAACTGAAATAACAG+TGG | + | chr1_4:53334750-53334769 | Msa0169870:CDS | 35.0% | |
| ! | TTCGTTTCTGATTTTTCCCA+AGG | + | chr1_4:53334777-53334796 | Msa0169870:CDS | 35.0% |
| ! | TCGTTTCTGATTTTTCCCAA+GGG | + | chr1_4:53334778-53334797 | Msa0169870:CDS | 35.0% |
| AGGAAAAGTAGATAGTGACA+CGG | + | chr1_4:53335419-53335438 | Msa0169870:intron | 35.0% | |
| ACTTTCTCTCTCTATTGCTT+TGG | - | chr1_4:53335448-53335467 | None:intergenic | 35.0% | |
| GAGAGATAAAGTTGTCACAT+AGG | + | chr1_4:53335487-53335506 | Msa0169870:intron | 35.0% | |
| TCACATAGGTTGTCACAAAA+TGG | + | chr1_4:53335501-53335520 | Msa0169870:intron | 35.0% | |
| GAAAAGGTAACTTCTATGCA+AGG | - | chr1_4:53336137-53336156 | None:intergenic | 35.0% | |
| AACATTAATGTCAACCTGCA+CGG | - | chr1_4:53336390-53336409 | None:intergenic | 35.0% | |
| ! | TGTTTCTACTCTAGATGTCA+CGG | + | chr1_4:53336439-53336458 | Msa0169870:CDS | 35.0% |
| !! | TTTTAAGGAGTAAGATGCCA+TGG | + | chr1_4:53336582-53336601 | Msa0169870:CDS | 35.0% |
| CAAAAAGACGTCTATGTTTG+TGG | + | chr1_4:53336667-53336686 | Msa0169870:CDS | 35.0% | |
| ! | GATCAAGTCTTATGGAATCA+AGG | + | chr1_4:53336736-53336755 | Msa0169870:CDS | 35.0% |
| AACTGGATTGTATCTGTTGT+AGG | + | chr1_4:53336806-53336825 | Msa0169870:intron | 35.0% | |
| TTACCCATATGGAAATGTTG+TGG | - | chr1_4:53336841-53336860 | None:intergenic | 35.0% | |
| ! | GGGTAAGTAAATTTTCGACT+TGG | + | chr1_4:53336855-53336874 | Msa0169870:intron | 35.0% |
| GTTGTGAAATATGTTGTTGC+AGG | + | chr1_4:53336888-53336907 | Msa0169870:intron | 35.0% | |
| ! | GTGTAAAGACCGTTGAATTT+TGG | + | chr1_4:53336910-53336929 | Msa0169870:intron | 35.0% |
| GCTTCTCTCTTTAAATCTCA+CGG | + | chr1_4:53336952-53336971 | Msa0169870:intron | 35.0% | |
| TTACAACTTCAGCAGATAGA+CGG | + | chr1_4:53336978-53336997 | Msa0169870:intron | 35.0% | |
| TTGCATACTTAGTGAACTGT+TGG | - | chr1_4:53337389-53337408 | None:intergenic | 35.0% | |
| GTCAACATAGAAGAGTTCAA+TGG | - | chr1_4:53337454-53337473 | None:intergenic | 35.0% | |
| TGAACTCTTCTATGTTGACA+AGG | + | chr1_4:53337455-53337474 | Msa0169870:CDS | 35.0% | |
| !! | AAAACCTCGTAAGTCGATTT+TGG | + | chr1_4:53337484-53337503 | Msa0169870:CDS | 35.0% |
| ! | AACTTCTTGTGTCACTACAT+CGG | - | chr1_4:53337553-53337572 | None:intergenic | 35.0% |
| CAGCAACAATAGGAATTTCA+AGG | - | chr1_4:53337782-53337801 | None:intergenic | 35.0% | |
| CTTGAAATTCCTATTGTTGC+TGG | + | chr1_4:53337780-53337799 | Msa0169870:CDS | 35.0% | |
| ! | TCAGGACATTTTATAGTCTC+AGG | - | chr1_4:53337813-53337832 | None:intergenic | 35.0% |
| ATGAAAATCTCCATGGTACT+AGG | - | chr1_4:53337840-53337859 | None:intergenic | 35.0% | |
| !!! | TTGACGTGGTTTTATGTTAC+TGG | + | chr1_4:53337912-53337931 | Msa0169870:three_prime_UTR | 35.0% |
| !!! | TGACGTGGTTTTATGTTACT+GGG | + | chr1_4:53337913-53337932 | Msa0169870:three_prime_UTR | 35.0% |
| ! | TTTTATGTTACTGGGTCTTG+TGG | + | chr1_4:53337921-53337940 | Msa0169870:three_prime_UTR | 35.0% |
| !! | AAGAGTACCTTTGATGATGG+TGG | - | chr1_4:53332751-53332770 | None:intergenic | 40.0% |
| GGTCATCAGACATGGTTAAT+GGG | - | chr1_4:53332809-53332828 | None:intergenic | 40.0% | |
| TGGTCATCAGACATGGTTAA+TGG | - | chr1_4:53332810-53332829 | None:intergenic | 40.0% | |
| AATGTGTGTTGAACGTGCAA+GGG | - | chr1_4:53332916-53332935 | None:intergenic | 40.0% | |
| TTGTGTGCAATTTCCTCACT+TGG | - | chr1_4:53333863-53333882 | None:intergenic | 40.0% | |
| ! | GTGTGAAAGCTTGTTCAGTA+TGG | - | chr1_4:53333897-53333916 | None:intergenic | 40.0% |
| ACAAGCTTTCACACTATGAC+TGG | + | chr1_4:53333903-53333922 | Msa0169870:CDS | 40.0% | |
| CAAGCTTTCACACTATGACT+GGG | + | chr1_4:53333904-53333923 | Msa0169870:CDS | 40.0% | |
| TTTCAGCAAAGCCACAGATT+TGG | - | chr1_4:53334020-53334039 | None:intergenic | 40.0% | |
| !! | CGATGTTTTTGAATTGCTGC+AGG | - | chr1_4:53334064-53334083 | None:intergenic | 40.0% |
| TGCTGCTATTGTTACTCAGT+TGG | + | chr1_4:53334252-53334271 | Msa0169870:CDS | 40.0% | |
| AAGCAAGAACTTTCCCACTA+TGG | + | chr1_4:53334427-53334446 | Msa0169870:CDS | 40.0% | |
| TACTACATCTGTATCCGATG+AGG | + | chr1_4:53334562-53334581 | Msa0169870:intron | 40.0% | |
| !! | AGCACCACTGTTATTTCAGT+TGG | - | chr1_4:53334757-53334776 | None:intergenic | 40.0% |
| ! | GTTCCTCAGTTGCTTTATGA+TGG | + | chr1_4:53334802-53334821 | Msa0169870:CDS | 40.0% |
| AAAGATACGAACCGTAGTCT+TGG | - | chr1_4:53334833-53334852 | None:intergenic | 40.0% | |
| CAGAATGTCGAAAACATAGC+TGG | + | chr1_4:53336614-53336633 | Msa0169870:CDS | 40.0% | |
| TTTGTGGTGTTTAGTCCTCA+AGG | + | chr1_4:53336683-53336702 | Msa0169870:CDS | 40.0% | |
| CAAGGCTTTCCCATTTACAA+TGG | + | chr1_4:53336754-53336773 | Msa0169870:CDS | 40.0% | |
| GCTTCTCTCCCAAAATTCAA+CGG | - | chr1_4:53336922-53336941 | None:intergenic | 40.0% | |
| GTCTATCTGCTGAAGTTGTA+AGG | - | chr1_4:53336979-53336998 | None:intergenic | 40.0% | |
| GAAAATGTGCTTGTTCTGCT+CGG | - | chr1_4:53337337-53337356 | None:intergenic | 40.0% | |
| ! | AAGCACATTTTCTTCTACGG+CGG | + | chr1_4:53337345-53337364 | Msa0169870:CDS | 40.0% |
| GTTGGATCCATTCTTTGTCA+TGG | - | chr1_4:53337371-53337390 | None:intergenic | 40.0% | |
| GGTAACTTTCCAGCAACAAT+AGG | - | chr1_4:53337792-53337811 | None:intergenic | 40.0% | |
| CAAAACATTAGGGTTTGACG+TGG | + | chr1_4:53337898-53337917 | Msa0169870:exon | 40.0% | |
| TGATCTCGTGAATAAGAGTG+TGG | + | chr1_4:53337996-53338015 | Msa0169870:three_prime_UTR | 40.0% | |
| ! | GATCTCGTGAATAAGAGTGT+GGG | + | chr1_4:53337997-53338016 | Msa0169870:three_prime_UTR | 40.0% |
| ACTATGGCCACCATCATCAA+AGG | + | chr1_4:53332741-53332760 | Msa0169870:exon | 45.0% | |
| CTTAAGACACTCCTATCAGC+TGG | + | chr1_4:53332768-53332787 | Msa0169870:CDS | 45.0% | |
| TCTCAATCTCACCAGCTGAT+AGG | - | chr1_4:53332782-53332801 | None:intergenic | 45.0% | |
| !! | TGCAAGGGTATTCTGAGCAA+GGG | - | chr1_4:53332901-53332920 | None:intergenic | 45.0% |
| CAATGTGTGTTGAACGTGCA+AGG | - | chr1_4:53332917-53332936 | None:intergenic | 45.0% | |
| CATTGTTGACAGTGTTGTGC+AGG | + | chr1_4:53332932-53332951 | Msa0169870:CDS | 45.0% | |
| ! | ACAGGGTACCAAAGTAAGCT+TGG | + | chr1_4:53333031-53333050 | Msa0169870:intron | 45.0% |
| TGCTTGCTCCAAGCTTACTT+TGG | - | chr1_4:53333042-53333061 | None:intergenic | 45.0% | |
| ! | ATTGACTTCAAGGTGCACAG+TGG | - | chr1_4:53333098-53333117 | None:intergenic | 45.0% |
| TGTGCAATTTCCTCACTTGG+TGG | - | chr1_4:53333860-53333879 | None:intergenic | 45.0% | |
| AAGCCACAGATTTGGCAAGT+GGG | - | chr1_4:53334012-53334031 | None:intergenic | 45.0% | |
| AAAGCCACAGATTTGGCAAG+TGG | - | chr1_4:53334013-53334032 | None:intergenic | 45.0% | |
| CACAAAGGTTGTTCCTGCTT+TGG | + | chr1_4:53334177-53334196 | Msa0169870:CDS | 45.0% | |
| TCATATGCAAGCTCCAAAGC+AGG | - | chr1_4:53334193-53334212 | None:intergenic | 45.0% | |
| ACATCATCCTCAGTAGACTG+AGG | + | chr1_4:53334461-53334480 | Msa0169870:CDS | 45.0% | |
| TAGACTGAGGAAGCAGATCA+CGG | + | chr1_4:53334474-53334493 | Msa0169870:CDS | 45.0% | |
| GCACCATCATAAAGCAACTG+AGG | - | chr1_4:53334808-53334827 | None:intergenic | 45.0% | |
| !! | TGATGGTGCTACCAAGACTA+CGG | + | chr1_4:53334819-53334838 | Msa0169870:CDS | 45.0% |
| TTCTACTCTAGATGTCACGG+AGG | + | chr1_4:53336442-53336461 | Msa0169870:CDS | 45.0% | |
| GGATTCCAATCGTCGAAGAA+TGG | + | chr1_4:53336531-53336550 | Msa0169870:CDS | 45.0% | |
| TCGTTCCATTCTTCGACGAT+TGG | - | chr1_4:53336539-53336558 | None:intergenic | 45.0% | |
| GAGTAAGATGCCATGGTATG+TGG | + | chr1_4:53336589-53336608 | Msa0169870:CDS | 45.0% | |
| ACATTCTGCACCACATACCA+TGG | - | chr1_4:53336602-53336621 | None:intergenic | 45.0% | |
| GGTGTTTAGTCCTCAAGGAA+AGG | + | chr1_4:53336688-53336707 | Msa0169870:CDS | 45.0% | |
| TTGTGTTGCACCTTTCCTTG+AGG | - | chr1_4:53336701-53336720 | None:intergenic | 45.0% | |
| GAATTCAGAAGGACAGGAAC+TGG | + | chr1_4:53336789-53336808 | Msa0169870:CDS | 45.0% | |
| ! | TGGGAGAGAAGCGATTTTAG+TGG | + | chr1_4:53336930-53336949 | Msa0169870:intron | 45.0% |
| TTCTGCTCGGTCTGCATTAT+AGG | - | chr1_4:53337324-53337343 | None:intergenic | 45.0% | |
| !! | CTCGTAAGTCGATTTTGGAG+CGG | + | chr1_4:53337489-53337508 | Msa0169870:CDS | 45.0% |
| CAACAGATGGTCCTTTGCTA+AGG | - | chr1_4:53337617-53337636 | None:intergenic | 45.0% | |
| TGACCACTCAACACAACAGA+TGG | - | chr1_4:53337630-53337649 | None:intergenic | 45.0% | |
| TCTGTTGTGTTGAGTGGTCA+TGG | + | chr1_4:53337630-53337649 | Msa0169870:CDS | 45.0% | |
| TCCTGATTGTCCTAGTACCA+TGG | + | chr1_4:53337827-53337846 | Msa0169870:CDS | 45.0% | |
| TCCATGGTACTAGGACAATC+AGG | - | chr1_4:53337831-53337850 | None:intergenic | 45.0% | |
| ! | TTACTGGGTCTTGTGGTCTT+TGG | + | chr1_4:53337928-53337947 | Msa0169870:three_prime_UTR | 45.0% |
| ! | GTGGGACATTCAGAACCTTT+TGG | + | chr1_4:53338015-53338034 | Msa0169870:three_prime_UTR | 45.0% |
| ! | GGACATTCAGAACCTTTTGG+TGG | + | chr1_4:53338018-53338037 | Msa0169870:three_prime_UTR | 45.0% |
| CGTGGAACATAACCACCAAA+AGG | - | chr1_4:53338033-53338052 | None:intergenic | 45.0% | |
| !!! | ATTAATTTTATTAATTATGT+AGG | + | chr1_4:53334398-53334417 | Msa0169870:intron | 5.0% |
| !!! | TTAATTTTATTAATTATGTA+GGG | + | chr1_4:53334399-53334418 | Msa0169870:intron | 5.0% |
| !!! | ATATTTTATTTTTGTTTTAA+GGG | + | chr1_4:53334627-53334646 | Msa0169870:intron | 5.0% |
| !! | TGAAATTTATAAAAAAAATA+CGG | + | chr1_4:53335602-53335621 | Msa0169870:intron | 5.0% |
| ! | TGTGTCACTGTGGACATGTG+TGG | - | chr1_4:53332853-53332872 | None:intergenic | 50.0% |
| !! | GTGCAAGGGTATTCTGAGCA+AGG | - | chr1_4:53332902-53332921 | None:intergenic | 50.0% |
| AGACCCACTTGCCAAATCTG+TGG | + | chr1_4:53334006-53334025 | Msa0169870:CDS | 50.0% | |
| GAATTGCTGCAGGCTTTGCT+AGG | - | chr1_4:53334054-53334073 | None:intergenic | 50.0% | |
| TCTGCTTCCTCAGTCTACTG+AGG | - | chr1_4:53334471-53334490 | None:intergenic | 50.0% | |
| ACGGTCTGTCGTCAACAGAT+AGG | + | chr1_4:53334493-53334512 | Msa0169870:CDS | 50.0% | |
| AGCAACTGAGGAACACCCTT+GGG | - | chr1_4:53334796-53334815 | None:intergenic | 50.0% | |
| AAGCAACTGAGGAACACCCT+TGG | - | chr1_4:53334797-53334816 | None:intergenic | 50.0% | |
| ! | CGCTCCAAAATCGACTTACG+AGG | - | chr1_4:53337491-53337510 | None:intergenic | 50.0% |
| GGACCATCTGTTGTGTTGAG+TGG | + | chr1_4:53337624-53337643 | Msa0169870:CDS | 50.0% | |
| ATGAGTGACACGAGCAACAC+TGG | - | chr1_4:53337748-53337767 | None:intergenic | 50.0% | |
| ! | GTGGTCTTTGGTTCGAGACT+TGG | + | chr1_4:53337940-53337959 | Msa0169870:three_prime_UTR | 50.0% |
| ! | GTGGTGTAGTCTTGAAGCGT+TGG | + | chr1_4:53338129-53338148 | Msa0169870:three_prime_UTR | 50.0% |
| GTCATGCAAGCCACCAAGTG+AGG | + | chr1_4:53333847-53333866 | Msa0169870:CDS | 55.0% | |
| CTGCAGGCTTTGCTAGGATC+GGG | - | chr1_4:53334048-53334067 | None:intergenic | 55.0% | |
| GCTGCAGGCTTTGCTAGGAT+CGG | - | chr1_4:53334049-53334068 | None:intergenic | 55.0% | |
| ACGGCGGCCATGACAAAGAA+TGG | + | chr1_4:53337361-53337380 | Msa0169870:CDS | 55.0% | |
| GGTTGGGCTCTCCTTAGCAA+AGG | + | chr1_4:53337603-53337622 | Msa0169870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53332683 | 53338336 | 53332683 | ID=Msa0169870;Name=Msa0169870 |
| chr1_4 | mRNA | 53332683 | 53338336 | 53332683 | ID=Msa0169870-mRNA-1;Parent=Msa0169870;Name=Msa0169870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=61|0.83|0.85|1|1|1|7|428|657 |
| chr1_4 | exon | 53332683 | 53332953 | 53332683 | ID=Msa0169870-mRNA-1:exon:15869;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53333035 | 53333127 | 53333035 | ID=Msa0169870-mRNA-1:exon:15870;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53333845 | 53334293 | 53333845 | ID=Msa0169870-mRNA-1:exon:15871;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53334420 | 53334514 | 53334420 | ID=Msa0169870-mRNA-1:exon:15872;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53334710 | 53334840 | 53334710 | ID=Msa0169870-mRNA-1:exon:15873;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53336395 | 53336814 | 53336395 | ID=Msa0169870-mRNA-1:exon:15874;Parent=Msa0169870-mRNA-1 |
| chr1_4 | exon | 53337333 | 53338336 | 53337333 | ID=Msa0169870-mRNA-1:exon:15875;Parent=Msa0169870-mRNA-1 |
| chr1_4 | five_prime_UTR | 53332683 | 53332743 | 53332683 | ID=Msa0169870-mRNA-1:five_prime_utr;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53332744 | 53332953 | 53332744 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53333035 | 53333127 | 53333035 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53333845 | 53334293 | 53333845 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53334420 | 53334514 | 53334420 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53334710 | 53334840 | 53334710 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53336395 | 53336814 | 53336395 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | CDS | 53337333 | 53337908 | 53337333 | ID=Msa0169870-mRNA-1:cds;Parent=Msa0169870-mRNA-1 |
| chr1_4 | three_prime_UTR | 53337909 | 53338336 | 53337909 | ID=Msa0169870-mRNA-1:three_prime_utr;Parent=Msa0169870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
