AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463900 MtrunA17_Chr2g0331561 100.000 510 0 0 1 510 483 992 0.0 1004
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463900 AT1G79830.2 80.754 504 97 0 1 504 453 956 0.0 755
Msa1463900 AT1G79830.3 80.754 504 97 0 1 504 453 956 0.0 755
Msa1463900 AT1G79830.1 80.754 504 97 0 1 504 453 956 0.0 755
Msa1463900 AT1G79830.5 80.517 503 98 0 1 503 453 955 0.0 753
Msa1463900 AT1G79830.4 77.672 524 97 1 1 504 453 976 0.0 742

Find 122 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCTGCTTTGGAGTTGA+TGG 0.206713 tig0043744:-4379 Msa1463900:CDS
AATTTCAGATTTCATGTCTT+AGG 0.212074 tig0043744:-6406 Msa1463900:intron
TGCGGATATTGTCGATTTAA+AGG 0.215036 tig0043744:-3608 Msa1463900:CDS
GCCCCTTCTTCGGCTAAATT+AGG 0.266593 tig0043744:+3444 Msa1463900:intergenic
AAAAGTGGCCTTGTAGATTC+TGG 0.284871 tig0043744:+6863 Msa1463900:intergenic
AGTCAACTTACTTGTGAATA+AGG 0.303136 tig0043744:-3569 Msa1463900:intron
CTTTCTACTGCAAGCTCTCT+TGG 0.311177 tig0043744:-5552 Msa1463900:CDS
ATGTCAATTGGCACTGTAAC+AGG 0.317331 tig0043744:-3352 Msa1463900:three_prime_UTR
GAGGAGGCACTCTGCTGCTT+TGG 0.323174 tig0043744:-4388 Msa1463900:CDS
AGGTTGATGAACTCATTATC+TGG 0.329734 tig0043744:+3464 Msa1463900:intergenic
AAGCAAGTTCACCCTCCTTC+TGG 0.341526 tig0043744:+5388 Msa1463900:intergenic
GAAACACAAGCAAGAGTTGC+AGG 0.342334 tig0043744:-6234 Msa1463900:CDS
AGCCCAAGCTTCAGCTCTTC+TGG 0.342584 tig0043744:+6717 Msa1463900:intergenic
GTGAGAATCTTCTGAGATAT+AGG 0.345448 tig0043744:-3171 Msa1463900:three_prime_UTR
AATCTACAATAAGGAAACTT+AGG 0.349826 tig0043744:-7964 Msa1463900:CDS
GTCTCAGCTCTTCAAGTGCC+TGG 0.366063 tig0043744:+7229 Msa1463900:intergenic
GGAGAGGTTGCTGTGCTGCC+TGG 0.385183 tig0043744:-4438 Msa1463900:CDS
AAGACATGGCCATCGCAAAA+TGG 0.389786 tig0043744:+3388 Msa1463900:intergenic
CTACTCAAGAATCTACAATA+AGG 0.401149 tig0043744:-7973 Msa1463900:CDS
TTTAGCCGAAGAAGGGGCTT+GGG 0.401362 tig0043744:-3439 Msa1463900:three_prime_UTR
AGGTTTGACTACTAAACTTC+AGG 0.402862 tig0043744:-7811 Msa1463900:intron
TTCTTCTGAACGGAGAAATC+CGG 0.404553 tig0043744:-5478 Msa1463900:CDS
AAAGGCTGCTCGATCAGATC+TGG 0.412649 tig0043744:-5752 Msa1463900:CDS
CCAACTGATTTGCATGGAAA+AGG 0.412916 tig0043744:+2980 Msa1463900:intergenic
CAACTGATTTGCATGGAAAA+GGG 0.415405 tig0043744:+2981 Msa1463900:intergenic
AAGGGCAGCCTCAAAAGAAC+TGG 0.416899 tig0043744:+5413 Msa1463900:intergenic
CTCCTTTCAGGTCTTCAAGA+AGG 0.416935 tig0043744:-3292 Msa1463900:three_prime_UTR
AATTAATGTTCTTGAGGCTC+AGG 0.420129 tig0043744:-6498 Msa1463900:intron
GTATCATCACACACTCAAAA+AGG 0.422871 tig0043744:+3071 Msa1463900:intergenic
TGCCAGAAGAGCTGAAGCTT+GGG 0.428713 tig0043744:-6719 Msa1463900:CDS
TGAGAATCTTCTGAGATATA+GGG 0.429134 tig0043744:-3170 Msa1463900:three_prime_UTR
ATTTAGCCGAAGAAGGGGCT+TGG 0.447303 tig0043744:-3440 Msa1463900:three_prime_UTR
TAATGCTTTGGCTGCTGCTA+AGG 0.455514 tig0043744:-7349 Msa1463900:CDS
AGAGTATTACACTAATGCTT+TGG 0.456673 tig0043744:-7361 Msa1463900:CDS
ATTTCAGATTTCATGTCTTA+GGG 0.457515 tig0043744:-6405 Msa1463900:intron
CGTTCCCCAAGCCCCTTCTT+CGG 0.461913 tig0043744:+3434 Msa1463900:intergenic
GTGGAAGTTTGTTCTGATGA+TGG 0.462284 tig0043744:+5703 Msa1463900:intergenic
ATGCCAGAAGAGCTGAAGCT+TGG 0.463790 tig0043744:-6720 Msa1463900:CDS
GTCATGCTCTTCATATAGTA+AGG 0.468709 tig0043744:+5438 Msa1463900:intergenic
CAACCTAATTTAGCCGAAGA+AGG 0.472096 tig0043744:-3447 Msa1463900:exon
AGGTCGTGCTAGACAGTTTG+AGG 0.475906 tig0043744:-6279 Msa1463900:CDS
AACTCTTAATTCTCGACTAC+AGG 0.478064 tig0043744:-6683 Msa1463900:intron
AGCTAGAAGCACTGAGGAGG+AGG 0.485854 tig0043744:-4404 Msa1463900:CDS
GGCTGCCCTTCGCCAGAAGG+AGG 0.486586 tig0043744:-5400 Msa1463900:CDS
GAGCTGTGGACGATGTCAAT+TGG 0.489206 tig0043744:-3364 Msa1463900:three_prime_UTR
TAGCATAGATTCACGTTCCT+CGG 0.490816 tig0043744:+7254 Msa1463900:intergenic
GGACTCATGCTTAGTTCTCC+CGG 0.492273 tig0043744:+5459 Msa1463900:intergenic
ATCTACAATAAGGAAACTTA+GGG 0.494156 tig0043744:-7963 Msa1463900:CDS
TGATTCTCTTGCTGAAGAGT+TGG 0.499182 tig0043744:-4756 Msa1463900:CDS
AATAAGGAAACTTAGGGCTC+AGG 0.503704 tig0043744:-7957 Msa1463900:intron
TCTGCTGCTTTGGAGTTGAT+GGG 0.504224 tig0043744:-4378 Msa1463900:CDS
TGGTCACTACTCACAGGTAA+AGG 0.504243 tig0043744:+3028 Msa1463900:intergenic
TGGTCACTACTCACAGGTAA+AGG 0.504243 tig0043744:+3102 Msa1463900:intergenic
AAGGCAAATTGAAGCCATGC+AGG 0.505415 tig0043744:-6840 Msa1463900:intron
GTCTCGAATTAATGTTCTTG+AGG 0.506704 tig0043744:-6504 Msa1463900:CDS
TGAGGCTGCCCTTCGCCAGA+AGG 0.511547 tig0043744:-5403 Msa1463900:CDS
CGAAGAAGGGGCTTGGGGAA+CGG 0.513457 tig0043744:-3433 Msa1463900:three_prime_UTR
GCTTCAATTTGCCTTAAAAG+TGG 0.514353 tig0043744:+6848 Msa1463900:intergenic
AGCAGAATTATGCTTTGTTG+TGG 0.515039 tig0043744:+5684 Msa1463900:intergenic
TGCAAGCTCTCTTGGAAGCA+TGG 0.516788 tig0043744:-5544 Msa1463900:CDS
TCATATGTTTATTACCTGCA+TGG 0.518042 tig0043744:+6826 Msa1463900:intergenic
TCTTCTGAACGGAGAAATCC+GGG 0.521617 tig0043744:-5477 Msa1463900:CDS
GTTCACCCTCCTTCTGGCGA+AGG 0.523275 tig0043744:+5394 Msa1463900:intergenic
ATTAAGTAGGACCCTTGAAA+AGG 0.523678 tig0043744:-6369 Msa1463900:CDS
ATAAAGTAGAAAGCATCAAG+AGG 0.526612 tig0043744:-7455 Msa1463900:CDS
ACACAGGGAGCTTCTTCAGC+AGG 0.541484 tig0043744:-6201 Msa1463900:intron
AACCTAATTTAGCCGAAGAA+GGG 0.543217 tig0043744:-3446 Msa1463900:exon
ATTAAGTAGAAAGGAACAGC+AGG 0.545287 tig0043744:-7202 Msa1463900:intron
ATTTGTATTGAGTTATGACT+TGG 0.545808 tig0043744:-3211 Msa1463900:three_prime_UTR
GACAAAGGGCAGCTGAAAGT+AGG 0.548755 tig0043744:-6343 Msa1463900:CDS
AGCAGTTGCAGCTTTAGCCT+CGG 0.548902 tig0043744:+6571 Msa1463900:intergenic
CAGAACAAACTCAATTAAGT+AGG 0.552433 tig0043744:-6382 Msa1463900:CDS
CACAAGTTCCAGAATCTACA+AGG 0.552619 tig0043744:-6871 Msa1463900:CDS
TGCAGGAGGCATTGATACAC+AGG 0.553339 tig0043744:-6217 Msa1463900:CDS
GAGACAAACATTAAGTAGAA+AGG 0.554718 tig0043744:-7211 Msa1463900:CDS
AAGCTAGATTAGAGATCTTG+AGG 0.559554 tig0043744:-7844 Msa1463900:intron
TTCACCCTCCTTCTGGCGAA+GGG 0.560574 tig0043744:+5395 Msa1463900:intergenic
ACCTAATTTAGCCGAAGAAG+GGG 0.563466 tig0043744:-3445 Msa1463900:exon
GCAGGAATATCTTGCTGCAA+AGG 0.568058 tig0043744:-6321 Msa1463900:CDS
ACGTGAATCTATGCTAGTCC+AGG 0.568292 tig0043744:-7247 Msa1463900:CDS
AAGGGCAGCTGAAAGTAGGC+AGG 0.570941 tig0043744:-6339 Msa1463900:CDS
GCTGCCCTTCGCCAGAAGGA+GGG 0.572864 tig0043744:-5399 Msa1463900:CDS
AACTGATTTGCATGGAAAAG+GGG 0.575668 tig0043744:+2982 Msa1463900:intergenic
TTAGCCGAAGAAGGGGCTTG+GGG 0.578815 tig0043744:-3438 Msa1463900:three_prime_UTR
GTTGGTCAAATTGACAGCAC+AGG 0.581379 tig0043744:-4738 Msa1463900:intron
TGCTTCGTATATGTCACGCC+TGG 0.581600 tig0043744:-5370 Msa1463900:intron
GAGTCGTCTAAGAGAAGCCG+AGG 0.582632 tig0043744:-7271 Msa1463900:CDS
TTTGTATTGAGTTATGACTT+GGG 0.586485 tig0043744:-3210 Msa1463900:three_prime_UTR
CCCTTGAAAAGGAGAGACAA+AGG 0.587478 tig0043744:-6358 Msa1463900:CDS
CTGCTCGATCAGATCTGGAA+AGG 0.593349 tig0043744:-5747 Msa1463900:CDS
GGAATATCTTGCTGCAAAGG+AGG 0.597481 tig0043744:-6318 Msa1463900:CDS
AAGGGGCTTGGGGAACGGAA+AGG 0.603422 tig0043744:-3428 Msa1463900:three_prime_UTR
CATCTGACAGTTCTTCTGAA+CGG 0.605825 tig0043744:-5488 Msa1463900:CDS
ATCCTTCTTGAAGACCTGAA+AGG 0.606114 tig0043744:+3290 Msa1463900:intergenic
AATACAAATCATATTTAACA+AGG 0.608719 tig0043744:+3225 Msa1463900:intergenic
CAGAGCTAGAAGCACTGAGG+AGG 0.610099 tig0043744:-4407 Msa1463900:CDS
GGCAAGTGAAAGACGTTGTG+AGG 0.610203 tig0043744:-6903 Msa1463900:CDS
ACTGATTTGCATGGAAAAGG+GGG 0.611124 tig0043744:+2983 Msa1463900:intergenic
GGAGTCTGAAGCATTAGCAG+AGG 0.618572 tig0043744:-7328 Msa1463900:CDS
AAGAACATTAATTCGAGACA+AGG 0.618583 tig0043744:+6508 Msa1463900:intergenic
TAAAGTAGAAAGCATCAAGA+GGG 0.620228 tig0043744:-7454 Msa1463900:CDS
TTGGCACTGTAACAGGACAT+TGG 0.620920 tig0043744:-3345 Msa1463900:three_prime_UTR
TTGTATTGAGTTATGACTTG+GGG 0.622657 tig0043744:-3209 Msa1463900:three_prime_UTR
CCTTGAAAAGGAGAGACAAA+GGG 0.626218 tig0043744:-6357 Msa1463900:CDS
GAGGAAGCTGACACTCAAGA+AGG 0.633887 tig0043744:-6299 Msa1463900:CDS
GTGTGAAAAGCTGCGTGGAG+AGG 0.635184 tig0043744:-4454 Msa1463900:CDS
ATGGCCATGTCTTTGAGCTG+TGG 0.636559 tig0043744:-3378 Msa1463900:three_prime_UTR
GCAACATGGTCACTACTCAC+AGG 0.636891 tig0043744:+3022 Msa1463900:intergenic
GCAACATGGTCACTACTCAC+AGG 0.636891 tig0043744:+3096 Msa1463900:intergenic
GATGGGTGAACGTGATGAAG+AGG 0.640970 tig0043744:-4361 Msa1463900:intron
TCGTCCACAGCTCAAAGACA+TGG 0.644081 tig0043744:+3374 Msa1463900:intergenic
ATGAAATCTACAGGAAGCCG+AGG 0.654414 tig0043744:-6588 Msa1463900:intron
CTAGATTAGAGATCTTGAGG+AGG 0.665009 tig0043744:-7841 Msa1463900:intron
ATACAAATCATATTTAACAA+GGG 0.669299 tig0043744:+3226 Msa1463900:intergenic
AGGGCAGCCTCAAAAGAACT+GGG 0.674272 tig0043744:+5414 Msa1463900:intergenic
ACACAAGCAAGAGTTGCAGG+AGG 0.689995 tig0043744:-6231 Msa1463900:CDS
CTGATTTGCATGGAAAAGGG+GGG 0.693037 tig0043744:+2984 Msa1463900:intergenic
ATAGCTGGAGGAACTTCGTG+CGG 0.700493 tig0043744:-3626 Msa1463900:intron
GCAGGAGGCATTGATACACA+GGG 0.712015 tig0043744:-6216 Msa1463900:CDS
AATCAGAGCTAGAAGCACTG+AGG 0.744027 tig0043744:-4410 Msa1463900:CDS
CTGCAGTGTGAAAAGCTGCG+TGG 0.758745 tig0043744:-4459 Msa1463900:intron
CATGCTCTGTAGAGACATCG+AGG 0.760446 tig0043744:-7079 Msa1463900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATTTTAGTATA+TGG + tig0043744:5114-5133 Msa1463900:intergenic 10.0%
!! AAATAAAAACAAAAAATTGA+TGG - tig0043744:5121-5140 Msa1463900:intron 10.0%
!! AATAAAAACAAAAAATTGAT+GGG - tig0043744:5122-5141 Msa1463900:intron 10.0%
!!! CATGTATTATTTTATATTTA+TGG + tig0043744:6832-6851 Msa1463900:intergenic 10.0%
!! TTTATTTATAATTATGTGAA+AGG + tig0043744:7301-7320 Msa1463900:intergenic 10.0%
!! AATATAAGATTCATCATTTA+CGG + tig0043744:3111-3130 Msa1463900:intergenic 15.0%
!!! ATAAATGTCATATTACTTTT+AGG - tig0043744:3337-3356 Msa1463900:three_prime_UTR 15.0%
!! AATTTAGTAAAAAGAAAAGA+AGG + tig0043744:3832-3851 Msa1463900:intergenic 15.0%
!! TAAATACAATAATAACTAGT+AGG + tig0043744:4369-4388 Msa1463900:intergenic 15.0%
!! TATAATATACTTTATGATGT+AGG - tig0043744:5399-5418 Msa1463900:CDS 15.0%
!! ATAATATACTTTATGATGTA+GGG - tig0043744:5400-5419 Msa1463900:CDS 15.0%
!! AACTAGTAATATAAATATGA+GGG + tig0043744:6364-6383 Msa1463900:intergenic 15.0%
!! TAACTAGTAATATAAATATG+AGG + tig0043744:6365-6384 Msa1463900:intergenic 15.0%
!! ATACAAATCATATTTAACAA+GGG + tig0043744:7767-7786 Msa1463900:intergenic 15.0%
!! AATACAAATCATATTTAACA+AGG + tig0043744:7768-7787 Msa1463900:intergenic 15.0%
!! ATAATTACAATCAGTGAAAT+GGG + tig0043744:3317-3336 Msa1463900:intergenic 20.0%
!! TATAATTACAATCAGTGAAA+TGG + tig0043744:3318-3337 Msa1463900:intergenic 20.0%
!!! AAATTCCATTTTAAAGTAGT+AGG - tig0043744:3433-3452 Msa1463900:three_prime_UTR 20.0%
!! TTAGAAATCCAAATAACATT+AGG + tig0043744:3469-3488 Msa1463900:intergenic 20.0%
!! ACTAAAACTTCAATAAAACA+AGG + tig0043744:4018-4037 Msa1463900:intergenic 20.0%
!!! TTTTATTGAAGTTTTAGTAG+TGG - tig0043744:4020-4039 Msa1463900:intron 20.0%
!! AAATGACATAAAAATCACAA+AGG + tig0043744:5196-5215 Msa1463900:intergenic 20.0%
!!! TTTTTATGTCATTTTTTTCC+AGG - tig0043744:5202-5221 Msa1463900:intron 20.0%
!! AATATTAAACTAGAGAATGA+AGG + tig0043744:5658-5677 Msa1463900:intergenic 20.0%
!!! TCATTCTCTAGTTTAATATT+TGG - tig0043744:5658-5677 Msa1463900:intron 20.0%
!! TAACAAAGAATGTTTATAAG+AGG + tig0043744:6010-6029 Msa1463900:intergenic 20.0%
!! TTATAAACATTCTTTGTTAG+AGG - tig0043744:6011-6030 Msa1463900:intron 20.0%
!! TATATTACTAGTTAGTTACT+AGG - tig0043744:6371-6390 Msa1463900:CDS 20.0%
!! GTTATTAAAATAAGTTGCTA+GGG + tig0043744:6455-6474 Msa1463900:intergenic 20.0%
!! AGTTATTAAAATAAGTTGCT+AGG + tig0043744:6456-6475 Msa1463900:intergenic 20.0%
!!! TTTCTAAAAGCGATATTTTA+GGG - tig0043744:6674-6693 Msa1463900:intron 20.0%
!! TGAACAAAAATTATCTTTCA+GGG + tig0043744:6952-6971 Msa1463900:intergenic 20.0%
!!! ATCTTGCAAATTCTTTTTTA+AGG - tig0043744:6998-7017 Msa1463900:intron 20.0%
!!! TTTTGATTTATCAGATTGTA+TGG + tig0043744:7143-7162 Msa1463900:intergenic 20.0%
!!! GAGAAAAGATAACAATTTTT+GGG - tig0043744:7214-7233 Msa1463900:CDS 20.0%
!! ATAATTATGTGAAAGGAAAT+CGG + tig0043744:7294-7313 Msa1463900:intergenic 20.0%
!! TGTAAAAAAAATATATGGCA+TGG + tig0043744:7503-7522 Msa1463900:intergenic 20.0%
!! GGATCTGTAAAAAAAATATA+TGG + tig0043744:7508-7527 Msa1463900:intergenic 20.0%
! AATCTACAATAAGGAAACTT+AGG - tig0043744:3026-3045 Msa1463900:three_prime_UTR 25.0%
! ATCTACAATAAGGAAACTTA+GGG - tig0043744:3027-3046 Msa1463900:three_prime_UTR 25.0%
!!! AATCTAGCTTTCATGAAAAA+AGG + tig0043744:3136-3155 Msa1463900:intergenic 25.0%
! ATAACTTTCAATAATGCTCT+TGG + tig0043744:3215-3234 Msa1463900:intergenic 25.0%
!! ATTTTCTTCGTGATATAGTT+TGG - tig0043744:3281-3300 Msa1463900:three_prime_UTR 25.0%
!! TTTACTAAATTGACTTTCAC+AGG - tig0043744:3841-3860 Msa1463900:intron 25.0%
!!! GTCAGTTATTTAACTTTTTG+AGG - tig0043744:3981-4000 Msa1463900:intron 25.0%
!!! TCTTTTTCAATGAAATCTAC+AGG - tig0043744:4393-4412 Msa1463900:CDS 25.0%
! AATTTCAGATTTCATGTCTT+AGG - tig0043744:4584-4603 Msa1463900:intron 25.0%
! ATTTCAGATTTCATGTCTTA+GGG - tig0043744:4585-4604 Msa1463900:intron 25.0%
! TTTCAATTCTTCCATTACTT+TGG - tig0043744:4907-4926 Msa1463900:intron 25.0%
! AGAAACCAAATAAATGTCTT+TGG + tig0043744:4949-4968 Msa1463900:intergenic 25.0%
! AACAAAAAATTGATGGGATA+TGG - tig0043744:5128-5147 Msa1463900:intron 25.0%
! TAATACAAAAGAAAGACATG+TGG - tig0043744:6403-6422 Msa1463900:intron 25.0%
!!! CTTTCTAAAAGCGATATTTT+AGG - tig0043744:6673-6692 Msa1463900:intron 25.0%
!!! TTCTAAAAGCGATATTTTAG+GGG - tig0043744:6675-6694 Msa1463900:intron 25.0%
! AAAATAGAACAAGTAAACAG+AGG - tig0043744:6772-6791 Msa1463900:intron 25.0%
! AAATAGAACAAGTAAACAGA+GGG - tig0043744:6773-6792 Msa1463900:intron 25.0%
! TTATAAACTAGTACCAAACA+TGG - tig0043744:6861-6880 Msa1463900:CDS 25.0%
! GAATAAAACATTTCCATGTT+TGG + tig0043744:6877-6896 Msa1463900:intergenic 25.0%
!!! ATATTTTGGAAAAGTGGATT+GGG + tig0043744:6899-6918 Msa1463900:intergenic 25.0%
!!! AATATTTTGGAAAAGTGGAT+TGG + tig0043744:6900-6919 Msa1463900:intergenic 25.0%
!!! CCATAAATATTTTGGAAAAG+TGG + tig0043744:6905-6924 Msa1463900:intergenic 25.0%
!!! CCACTTTTCCAAAATATTTA+TGG - tig0043744:6902-6921 Msa1463900:CDS 25.0%
!! TCTGGTTACCATAAATATTT+TGG + tig0043744:6913-6932 Msa1463900:intergenic 25.0%
! CTGAACAAAAATTATCTTTC+AGG + tig0043744:6953-6972 Msa1463900:intergenic 25.0%
!! TTTTTGTTCAGATACAAGTT+TGG - tig0043744:6962-6981 Msa1463900:intron 25.0%
!! GGAGAAAAGATAACAATTTT+TGG - tig0043744:7213-7232 Msa1463900:CDS 25.0%
! ATTTGTATTGAGTTATGACT+TGG - tig0043744:7779-7798 Msa1463900:intron 25.0%
! TTTGTATTGAGTTATGACTT+GGG - tig0043744:7780-7799 Msa1463900:intron 25.0%
CTACTCAAGAATCTACAATA+AGG - tig0043744:3017-3036 Msa1463900:three_prime_UTR 30.0%
! AAAGGATTTAAGACTGTTGT+AGG + tig0043744:3083-3102 Msa1463900:intergenic 30.0%
TCATCATTTACGGATAGAAA+AGG + tig0043744:3101-3120 Msa1463900:intergenic 30.0%
! CAACACCTACTACTTTAAAA+TGG + tig0043744:3441-3460 Msa1463900:intergenic 30.0%
TTGACACTCCTAATGTTATT+TGG - tig0043744:3458-3477 Msa1463900:exon 30.0%
TTCTAATTTAAGCTGCTGTT+TGG - tig0043744:3483-3502 Msa1463900:intron 30.0%
!! ATAAAGTAGAAAGCATCAAG+AGG - tig0043744:3535-3554 Msa1463900:intron 30.0%
!! TAAAGTAGAAAGCATCAAGA+GGG - tig0043744:3536-3555 Msa1463900:intron 30.0%
! AGAGTATTACACTAATGCTT+TGG - tig0043744:3629-3648 Msa1463900:intron 30.0%
GAGACAAACATTAAGTAGAA+AGG - tig0043744:3779-3798 Msa1463900:intron 30.0%
!! TAATTTGACTTGCATTTGCT+AGG - tig0043744:4066-4085 Msa1463900:intron 30.0%
TCATATGTTTATTACCTGCA+TGG + tig0043744:4167-4186 Msa1463900:intergenic 30.0%
AAGAACATTAATTCGAGACA+AGG + tig0043744:4485-4504 Msa1463900:intergenic 30.0%
CAGAACAAACTCAATTAAGT+AGG - tig0043744:4608-4627 Msa1463900:intron 30.0%
ACATTCAATGACCAAAGTAA+TGG + tig0043744:4921-4940 Msa1463900:intergenic 30.0%
AAATGCCTAAAAAAGCAAGT+TGG + tig0043744:5010-5029 Msa1463900:intergenic 30.0%
TAGGCATTTCAAAACATATG+TGG - tig0043744:5021-5040 Msa1463900:intron 30.0%
AAAACATATGTGGATGCTTT+GGG - tig0043744:5031-5050 Msa1463900:intron 30.0%
! AAAGGTTCTAATAAGATGGA+TGG + tig0043744:5178-5197 Msa1463900:intergenic 30.0%
! TCACAAAGGTTCTAATAAGA+TGG + tig0043744:5182-5201 Msa1463900:intergenic 30.0%
! CCTTTTCTTTTTCTATTTCC+TGG + tig0043744:5223-5242 Msa1463900:intergenic 30.0%
CCAGGAAATAGAAAAAGAAA+AGG - tig0043744:5220-5239 Msa1463900:intron 30.0%
!! CATAATTCTGCTTTTGAGAA+TGG - tig0043744:5317-5336 Msa1463900:intron 30.0%
TATTCAGTAACTTAGGCTAT+TGG + tig0043744:5691-5710 Msa1463900:intergenic 30.0%
!! ATTGAGTAATCTCTAGAGTA+AGG - tig0043744:5724-5743 Msa1463900:CDS 30.0%
GAAATATTAGAGTGGCTATT+TGG + tig0043744:5868-5887 Msa1463900:intergenic 30.0%
TTATCCAGGAAATATTAGAG+TGG + tig0043744:5876-5895 Msa1463900:intergenic 30.0%
GTTATTAAGTTAGCTATGTG+TGG + tig0043744:5935-5954 Msa1463900:intergenic 30.0%
AAGAATGTTTATAAGAGGAG+AGG + tig0043744:6005-6024 Msa1463900:intergenic 30.0%
ATAAAAATTTCAGGCATCAC+TGG - tig0043744:6201-6220 Msa1463900:intron 30.0%
AGACGCAAGAATACTATAAT+GGG - tig0043744:6317-6336 Msa1463900:CDS 30.0%
AACTCTTAACAATTATCCTC+TGG - tig0043744:6472-6491 Msa1463900:intron 30.0%
TATACAAATTGTGCTCAACA+AGG + tig0043744:6505-6524 Msa1463900:intergenic 30.0%
!! CGCTTTTAGAAAGCAAAATT+AGG + tig0043744:6666-6685 Msa1463900:intergenic 30.0%
!! TCTAAAAGCGATATTTTAGG+GGG - tig0043744:6676-6695 Msa1463900:intron 30.0%
GAGTTCCTTCTTAAATTTCT+AGG + tig0043744:7038-7057 Msa1463900:intergenic 30.0%
! TCACCTTATAAATTTTCTCG+TGG - tig0043744:7066-7085 Msa1463900:CDS 30.0%
CAACCACGAGAAAATTTATA+AGG + tig0043744:7072-7091 Msa1463900:intergenic 30.0%
GATTTATCAGATTGTATGGA+AGG + tig0043744:7139-7158 Msa1463900:intergenic 30.0%
CAAAATTGAATGTGTATAGC+TGG - tig0043744:7349-7368 Msa1463900:CDS 30.0%
AGTCAACTTACTTGTGAATA+AGG - tig0043744:7421-7440 Msa1463900:CDS 30.0%
!! AGTGATTTTTCAGAGTCTAA+AGG + tig0043744:7680-7699 Msa1463900:intergenic 30.0%
TTGTATTGAGTTATGACTTG+GGG - tig0043744:7781-7800 Msa1463900:intron 30.0%
!! TGAGAATCTTCTGAGATATA+GGG - tig0043744:7820-7839 Msa1463900:CDS 30.0%
!!! TTCTTGAGTAGCCTGTTTTT+TGG + tig0043744:3008-3027 Msa1174650:intergenic 35.0%
AAGCTAGATTAGAGATCTTG+AGG - tig0043744:3146-3165 Msa1463900:three_prime_UTR 35.0%
AGGTTTGACTACTAAACTTC+AGG - tig0043744:3179-3198 Msa1463900:three_prime_UTR 35.0%
! GATGCTTTCTAAAGACATAG+AGG + tig0043744:3413-3432 Msa1463900:intergenic 35.0%
ATTAAGTAGAAAGGAACAGC+AGG - tig0043744:3788-3807 Msa1463900:intron 35.0%
TAAAAACAGCCTGGATATGA+AGG + tig0043744:3884-3903 Msa1463900:intergenic 35.0%
! TGTCTTCTTTAAAAACAGCC+TGG + tig0043744:3893-3912 Msa1463900:intergenic 35.0%
!!! AGTAGTGGTTTTTTCGCTTT+TGG - tig0043744:4035-4054 Msa1463900:intron 35.0%
!!! AATCTACAAGGCCACTTTTA+AGG - tig0043744:4131-4150 Msa1463900:intron 35.0%
GCTTCAATTTGCCTTAAAAG+TGG + tig0043744:4145-4164 Msa1463900:intergenic 35.0%
ACTAGAATTCACCTGATAAC+AGG - tig0043744:4241-4260 Msa1463900:intron 35.0%
AACTCTTAATTCTCGACTAC+AGG - tig0043744:4307-4326 Msa1463900:intron 35.0%
GTCTCGAATTAATGTTCTTG+AGG - tig0043744:4486-4505 Msa1463900:intron 35.0%
AATTAATGTTCTTGAGGCTC+AGG - tig0043744:4492-4511 Msa1463900:intron 35.0%
GAGTGAAATCATGTCTTCAA+TGG - tig0043744:4529-4548 Msa1463900:intron 35.0%
TGAAATCATGTCTTCAATGG+CGG - tig0043744:4532-4551 Msa1463900:intron 35.0%
ATTAAGTAGGACCCTTGAAA+AGG - tig0043744:4621-4640 Msa1463900:intron 35.0%
TCCATGTTATATGAAGCTCT+TGG - tig0043744:4856-4875 Msa1463900:intron 35.0%
ACCAAGAGCTTCATATAACA+TGG + tig0043744:4860-4879 Msa1463900:intergenic 35.0%
ACCAGCCAAAGACATTTATT+TGG - tig0043744:4941-4960 Msa1463900:intron 35.0%
ACCAAATAAATGTCTTTGGC+TGG + tig0043744:4945-4964 Msa1463900:intergenic 35.0%
!!! GAAAGCCAACTTGCTTTTTT+AGG - tig0043744:5002-5021 Msa1463900:intron 35.0%
CAAAACATATGTGGATGCTT+TGG - tig0043744:5030-5049 Msa1463900:intron 35.0%
TAGAACATGTGAGAAAGCTA+TGG - tig0043744:5080-5099 Msa1463900:intron 35.0%
TTGATGGGATATGGTATTGT+TGG - tig0043744:5137-5156 Msa1463900:intron 35.0%
! AGCAGAATTATGCTTTGTTG+TGG + tig0043744:5309-5328 Msa1463900:intergenic 35.0%
! AGCTTGCAGTAGAAAGTTTT+CGG + tig0043744:5434-5453 Msa1463900:intergenic 35.0%
! CTATTTTCTTCAAGCATCAC+TGG - tig0043744:5476-5495 Msa1463900:CDS 35.0%
GTCATGCTCTTCATATAGTA+AGG + tig0043744:5555-5574 Msa1463900:intergenic 35.0%
! CTCTAGTTTAATATTTGGCG+TGG - tig0043744:5663-5682 Msa1463900:intron 35.0%
! CAGTTGCTATTCAGTAACTT+AGG + tig0043744:5698-5717 Msa1463900:intergenic 35.0%
TGAAGATACAATTCCTACCA+AGG - tig0043744:5815-5834 Msa1463900:intron 35.0%
TTAGAGTGGCTATTTGGAAA+GGG + tig0043744:5862-5881 Msa1463900:intergenic 35.0%
ATTAGAGTGGCTATTTGGAA+AGG + tig0043744:5863-5882 Msa1463900:intergenic 35.0%
ATAGCCACTCTAATATTTCC+TGG - tig0043744:5869-5888 Msa1463900:intron 35.0%
TGTGTGGTGTGTGAATAAAA+AGG + tig0043744:5919-5938 Msa1463900:intergenic 35.0%
GAAACAATAGAGCTATCAAC+TGG + tig0043744:6052-6071 Msa1463900:intergenic 35.0%
CTCTTTCTACGGTAATATAC+AGG + tig0043744:6290-6309 Msa1463900:intergenic 35.0%
ATTACCGTAGAAAGAGAGAA+AGG - tig0043744:6294-6313 Msa1463900:CDS 35.0%
GAGACGCAAGAATACTATAA+TGG - tig0043744:6316-6335 Msa1463900:CDS 35.0%
!! GGGTTTAGTCTTGAGTATAT+GGG + tig0043744:6435-6454 Msa1463900:intergenic 35.0%
!! AGGGTTTAGTCTTGAGTATA+TGG + tig0043744:6436-6455 Msa1463900:intergenic 35.0%
AATTGTGCTCAACAAGGAAA+TGG + tig0043744:6499-6518 Msa1463900:intergenic 35.0%
AAAGAATTTGCAAGATCGAC+AGG + tig0043744:6994-7013 Msa1463900:intergenic 35.0%
GCACTCCTAGAAATTTAAGA+AGG - tig0043744:7030-7049 Msa1463900:intron 35.0%
TTATCAGATTGTATGGAAGG+AGG + tig0043744:7136-7155 Msa1463900:intergenic 35.0%
!! AATAAAAGCACTAGTCACAC+TGG - tig0043744:7166-7185 Msa1463900:intron 35.0%
TTTGTCACTCTCTGTATTTG+GGG + tig0043744:7193-7212 Msa1463900:intergenic 35.0%
CTTTGTCACTCTCTGTATTT+GGG + tig0043744:7194-7213 Msa1463900:intergenic 35.0%
AATTGAATGTGTATAGCTGG+AGG - tig0043744:7352-7371 Msa1463900:CDS 35.0%
!! TGCGGATATTGTCGATTTAA+AGG - tig0043744:7382-7401 Msa1463900:CDS 35.0%
!! AGGTTGATGAACTCATTATC+TGG + tig0043744:7529-7548 Msa1463900:intergenic 35.0%
AACCTAATTTAGCCGAAGAA+GGG - tig0043744:7544-7563 Msa1463900:intron 35.0%
TCTGAAAAATCACTCCTTTC+AGG - tig0043744:7686-7705 Msa1463900:intron 35.0%
!! GTGAGAATCTTCTGAGATAT+AGG - tig0043744:7819-7838 Msa1463900:CDS 35.0%
GTATCATCACACACTCAAAA+AGG + tig0043744:7848-7867 Msa1463900:intergenic 35.0%
AATAAGGAAACTTAGGGCTC+AGG - tig0043744:3033-3052 Msa1463900:three_prime_UTR 40.0%
CTAGATTAGAGATCTTGAGG+AGG - tig0043744:3149-3168 Msa1463900:three_prime_UTR 40.0%
GATCTTGAGGAGGAGAAAAA+AGG - tig0043744:3159-3178 Msa1463900:three_prime_UTR 40.0%
TAGCATAGATTCACGTTCCT+CGG + tig0043744:3739-3758 Msa1463900:intergenic 40.0%
CAACTGTTTCCTTCATATCC+AGG - tig0043744:3872-3891 Msa1463900:intron 40.0%
GGATCTTCAAAAACGTTACC+AGG - tig0043744:3932-3951 Msa1463900:intron 40.0%
CACAAGTTCCAGAATCTACA+AGG - tig0043744:4119-4138 Msa1463900:intron 40.0%
!! AAAAGTGGCCTTGTAGATTC+TGG + tig0043744:4130-4149 Msa1463900:intergenic 40.0%
GCAGCAGAACAAAAAACAGA+AGG + tig0043744:4205-4224 Msa1463900:intergenic 40.0%
!!! TGTTTTTTGTTCTGCTGCGT+GGG - tig0043744:4207-4226 Msa1463900:intron 40.0%
GGCATTTGAATCCTGTTATC+AGG + tig0043744:4255-4274 Msa1463900:intergenic 40.0%
! CCTTTGTCTCTCCTTTTCAA+GGG + tig0043744:4635-4654 Msa1463900:intergenic 40.0%
CCTTGAAAAGGAGAGACAAA+GGG - tig0043744:4633-4652 Msa1463900:intron 40.0%
! GTGGAAGTTTGTTCTGATGA+TGG + tig0043744:5290-5309 Msa1463900:intergenic 40.0%
CTGCTTCTCTTTACATCACT+CGG - tig0043744:5349-5368 Msa1463900:intron 40.0%
! GCTTGCAGTAGAAAGTTTTC+GGG + tig0043744:5433-5452 Msa1463900:intergenic 40.0%
CATCTGACAGTTCTTCTGAA+CGG - tig0043744:5502-5521 Msa1463900:CDS 40.0%
TTCTTCTGAACGGAGAAATC+CGG - tig0043744:5512-5531 Msa1463900:CDS 40.0%
CAATAGAGCTATCAACTGGA+TGG + tig0043744:6048-6067 Msa1463900:intergenic 40.0%
TGATTCTCTTGCTGAAGAGT+TGG - tig0043744:6234-6253 Msa1463900:CDS 40.0%
GTCTCCTTTCTCTCTTTCTA+CGG + tig0043744:6301-6320 Msa1463900:intergenic 40.0%
!!! TCTAGCTCTGATTTTAAGCC+AGG + tig0043744:6573-6592 Msa1463900:intergenic 40.0%
GGTTGAAATATTCAAGAGCC+CGG - tig0043744:7087-7106 Msa1463900:CDS 40.0%
CCTTTGTCACTCTCTGTATT+TGG + tig0043744:7195-7214 Msa1463900:intergenic 40.0%
CCAAATACAGAGAGTGACAA+AGG - tig0043744:7192-7211 Msa1463900:intron 40.0%
!!! TGACAGTGTTTTAGAGTCAG+AGG + tig0043744:7262-7281 Msa1463900:intergenic 40.0%
CAACCTAATTTAGCCGAAGA+AGG - tig0043744:7543-7562 Msa1463900:intron 40.0%
ACCTAATTTAGCCGAAGAAG+GGG - tig0043744:7545-7564 Msa1463900:intron 40.0%
ATGTCAATTGGCACTGTAAC+AGG - tig0043744:7638-7657 Msa1463900:intron 40.0%
ATCCTTCTTGAAGACCTGAA+AGG + tig0043744:7703-7722 Msa1463900:intergenic 40.0%
!!! ACCATGTTGCTGCTTTTTTC+TGG - tig0043744:7981-8000 Msa1463900:CDS 40.0%
!!! CCATGTTGCTGCTTTTTTCT+GGG - tig0043744:7982-8001 Msa1463900:CDS 40.0%
! TGGTTGATGTCATGCAATCC+AGG - tig0043744:3503-3522 Msa1463900:intron 45.0%
TTGATGTCATGCAATCCAGG+TGG - tig0043744:3506-3525 Msa1463900:intron 45.0%
CTACTTTATTCTCCTCCACC+TGG + tig0043744:3524-3543 Msa1463900:intergenic 45.0%
TAATGCTTTGGCTGCTGCTA+AGG - tig0043744:3641-3660 Msa1463900:intron 45.0%
ACGTGAATCTATGCTAGTCC+AGG - tig0043744:3743-3762 Msa1463900:intron 45.0%
AAGGCAAATTGAAGCCATGC+AGG - tig0043744:4150-4169 Msa1463900:intron 45.0%
!!! CTGTTTTTTGTTCTGCTGCG+TGG - tig0043744:4206-4225 Msa1463900:intron 45.0%
ATGAAATCTACAGGAAGCCG+AGG - tig0043744:4402-4421 Msa1463900:CDS 45.0%
CCCTTGAAAAGGAGAGACAA+AGG - tig0043744:4632-4651 Msa1463900:intron 45.0%
! CCCTTTGTCTCTCCTTTTCA+AGG + tig0043744:4636-4655 Msa1463900:intergenic 45.0%
GCAGGAATATCTTGCTGCAA+AGG - tig0043744:4669-4688 Msa1463900:intron 45.0%
GGAATATCTTGCTGCAAAGG+AGG - tig0043744:4672-4691 Msa1463900:intron 45.0%
GAAACACAAGCAAGAGTTGC+AGG - tig0043744:4756-4775 Msa1463900:CDS 45.0%
AGCAGGTAGAGTTTCTGCTT+AGG - tig0043744:4806-4825 Msa1463900:intron 45.0%
GCAGGTAGAGTTTCTGCTTA+GGG - tig0043744:4807-4826 Msa1463900:intron 45.0%
CTTTCTACTGCAAGCTCTCT+TGG - tig0043744:5438-5457 Msa1463900:CDS 45.0%
TCTTCTGAACGGAGAAATCC+GGG - tig0043744:5513-5532 Msa1463900:CDS 45.0%
! CATGACACCCAGTTCTTTTG+AGG - tig0043744:5569-5588 Msa1463900:CDS 45.0%
TGAAGGCAACAAACCATACC+AGG + tig0043744:5641-5660 Msa1463900:intergenic 45.0%
TACCAAGGATTCGAGAGACT+GGG - tig0043744:5830-5849 Msa1463900:intron 45.0%
! CCTGTCATTGTTGGTTATCC+AGG + tig0043744:5890-5909 Msa1463900:intergenic 45.0%
CCTGGATAACCAACAATGAC+AGG - tig0043744:5887-5906 Msa1463900:intron 45.0%
AGGAAACAGCCTGTCATTGT+TGG + tig0043744:5899-5918 Msa1463900:intergenic 45.0%
GTTGGTCAAATTGACAGCAC+AGG - tig0043744:6252-6271 Msa1463900:CDS 45.0%
TCAACAAGGAAATGGACCAG+AGG + tig0043744:6491-6510 Msa1463900:intergenic 45.0%
!! AATCAGAGCTAGAAGCACTG+AGG - tig0043744:6580-6599 Msa1463900:intron 45.0%
!! TCTGCTGCTTTGGAGTTGAT+GGG - tig0043744:6612-6631 Msa1463900:intron 45.0%
! TTCAGGGTGAGTTTGCTTCA+AGG + tig0043744:6936-6955 Msa1463900:intergenic 45.0%
AAATCCAGTTGTGCGATGTC+CGG + tig0043744:7109-7128 Msa1463900:intergenic 45.0%
! GTCTAGCAACCATTTTGCGA+TGG - tig0043744:7593-7612 Msa1463900:intron 45.0%
AAGACATGGCCATCGCAAAA+TGG + tig0043744:7605-7624 Msa1463900:intergenic 45.0%
TTGGCACTGTAACAGGACAT+TGG - tig0043744:7645-7664 Msa1463900:intron 45.0%
! CTCCTTTCAGGTCTTCAAGA+AGG - tig0043744:7698-7717 Msa1463900:intron 45.0%
TGGTCACTACTCACAGGTAA+AGG + tig0043744:7891-7910 Msa1463900:intergenic 45.0%
CACTCAAAAAGGCAGCAACA+TGG + tig0043744:7911-7930 Msa1463900:intergenic 45.0%
TGGTCACTACTCACAGGTAA+AGG + tig0043744:7891-7910 Msa1463900:intergenic 45.0%
CCCAGAAAAAAGCAGCAACA+TGG + tig0043744:7985-8004 Msa1463900:intergenic 45.0%
!!! TTTTTAATTATAAAAATTTC+AGG - tig0043744:6192-6211 Msa1463900:intron 5.0%
ATGTCATGCAATCCAGGTGG+AGG - tig0043744:3509-3528 Msa1463900:intron 50.0%
! GGAGTCTGAAGCATTAGCAG+AGG - tig0043744:3662-3681 Msa1463900:intron 50.0%
CATGCTCTGTAGAGACATCG+AGG - tig0043744:3911-3930 Msa1463900:intron 50.0%
TGACAGACAAGCAGAGAGCA+GGG + tig0043744:3965-3984 Msa1463900:intergenic 50.0%
GGCAAGTGAAAGACGTTGTG+AGG - tig0043744:4087-4106 Msa1463900:intron 50.0%
ATGCCAGAAGAGCTGAAGCT+TGG - tig0043744:4270-4289 Msa1463900:intron 50.0%
TGCCAGAAGAGCTGAAGCTT+GGG - tig0043744:4271-4290 Msa1463900:intron 50.0%
! AGCAGTTGCAGCTTTAGCCT+CGG + tig0043744:4422-4441 Msa1463900:intergenic 50.0%
GACAAAGGGCAGCTGAAAGT+AGG - tig0043744:4647-4666 Msa1463900:intron 50.0%
GAGGAAGCTGACACTCAAGA+AGG - tig0043744:4691-4710 Msa1463900:intron 50.0%
AGGTCGTGCTAGACAGTTTG+AGG - tig0043744:4711-4730 Msa1463900:intron 50.0%
ACACAAGCAAGAGTTGCAGG+AGG - tig0043744:4759-4778 Msa1463900:CDS 50.0%
!! TGCAGGAGGCATTGATACAC+AGG - tig0043744:4773-4792 Msa1463900:CDS 50.0%
!! GCAGGAGGCATTGATACACA+GGG - tig0043744:4774-4793 Msa1463900:CDS 50.0%
AAAGGCTGCTCGATCAGATC+TGG - tig0043744:5238-5257 Msa1463900:intron 50.0%
CTGCTCGATCAGATCTGGAA+AGG - tig0043744:5243-5262 Msa1463900:intron 50.0%
TGCAAGCTCTCTTGGAAGCA+TGG - tig0043744:5446-5465 Msa1463900:CDS 50.0%
! GGACTCATGCTTAGTTCTCC+CGG + tig0043744:5534-5553 Msa1463900:intergenic 50.0%
AGGGCAGCCTCAAAAGAACT+GGG + tig0043744:5579-5598 Msa1463900:intergenic 50.0%
AAGGGCAGCCTCAAAAGAAC+TGG + tig0043744:5580-5599 Msa1463900:intergenic 50.0%
AAGCAAGTTCACCCTCCTTC+TGG + tig0043744:5605-5624 Msa1463900:intergenic 50.0%
TGCTTCGTATATGTCACGCC+TGG - tig0043744:5620-5639 Msa1463900:intron 50.0%
CGTATATGTCACGCCTGGTA+TGG - tig0043744:5625-5644 Msa1463900:intron 50.0%
CAGTCTCTCGAATCCTTGGT+AGG + tig0043744:5831-5850 Msa1463900:intergenic 50.0%
CTACCAAGGATTCGAGAGAC+TGG - tig0043744:5829-5848 Msa1463900:intron 50.0%
ATCCCAGTCTCTCGAATCCT+TGG + tig0043744:5835-5854 Msa1463900:intergenic 50.0%
! CAGCTTTTCACACTGCAGTG+TGG + tig0043744:6529-6548 Msa1463900:intergenic 50.0%
!! CTCTGCTGCTTTGGAGTTGA+TGG - tig0043744:6611-6630 Msa1463900:intron 50.0%
GATGGGTGAACGTGATGAAG+AGG - tig0043744:6629-6648 Msa1463900:intron 50.0%
! GGTGAGTTTGCTTCAAGGTC+TGG + tig0043744:6931-6950 Msa1463900:intergenic 50.0%
AATCCAGTTGTGCGATGTCC+GGG + tig0043744:7108-7127 Msa1463900:intergenic 50.0%
ATAGCTGGAGGAACTTCGTG+CGG - tig0043744:7364-7383 Msa1463900:CDS 50.0%
GCCCCTTCTTCGGCTAAATT+AGG + tig0043744:7549-7568 Msa1463900:intergenic 50.0%
ATTTAGCCGAAGAAGGGGCT+TGG - tig0043744:7550-7569 Msa1463900:intron 50.0%
TTTAGCCGAAGAAGGGGCTT+GGG - tig0043744:7551-7570 Msa1463900:intron 50.0%
ATGGCCATGTCTTTGAGCTG+TGG - tig0043744:7612-7631 Msa1463900:intron 50.0%
TCGTCCACAGCTCAAAGACA+TGG + tig0043744:7619-7638 Msa1463900:intergenic 50.0%
GAGCTGTGGACGATGTCAAT+TGG - tig0043744:7626-7645 Msa1463900:intron 50.0%
GCAACATGGTCACTACTCAC+AGG + tig0043744:7897-7916 Msa1463900:intergenic 50.0%
GCAACATGGTCACTACTCAC+AGG + tig0043744:7897-7916 Msa1463900:intergenic 50.0%
! CTTGTGTGCTACTGCTGCTG+TGG - tig0043744:3385-3404 Msa1463900:three_prime_UTR 55.0%
GAGTCGTCTAAGAGAAGCCG+AGG - tig0043744:3719-3738 Msa1463900:intron 55.0%
GTCTCAGCTCTTCAAGTGCC+TGG + tig0043744:3764-3783 Msa1463900:intergenic 55.0%
GACAGACAAGCAGAGAGCAG+GGG + tig0043744:3964-3983 Msa1463900:intergenic 55.0%
CTGACAGACAAGCAGAGAGC+AGG + tig0043744:3966-3985 Msa1463900:intergenic 55.0%
AGCCCAAGCTTCAGCTCTTC+TGG + tig0043744:4276-4295 Msa1463900:intergenic 55.0%
AAGGGCAGCTGAAAGTAGGC+AGG - tig0043744:4651-4670 Msa1463900:intron 55.0%
ACACAGGGAGCTTCTTCAGC+AGG - tig0043744:4789-4808 Msa1463900:intron 55.0%
TTCACCCTCCTTCTGGCGAA+GGG + tig0043744:5598-5617 Msa1463900:intergenic 55.0%
CTGCAGTGTGAAAAGCTGCG+TGG - tig0043744:6531-6550 Msa1463900:CDS 55.0%
GTGTGAAAAGCTGCGTGGAG+AGG - tig0043744:6536-6555 Msa1463900:CDS 55.0%
!! CAGAGCTAGAAGCACTGAGG+AGG - tig0043744:6583-6602 Msa1463900:intron 55.0%
!! AGCTAGAAGCACTGAGGAGG+AGG - tig0043744:6586-6605 Msa1463900:intron 55.0%
TTAGCCGAAGAAGGGGCTTG+GGG - tig0043744:7552-7571 Msa1463900:intron 55.0%
GTTCACCCTCCTTCTGGCGA+AGG + tig0043744:5599-5618 Msa1463900:intergenic 60.0%
!! GAGGAGGCACTCTGCTGCTT+TGG - tig0043744:6602-6621 Msa1463900:intron 60.0%
CGTTCCCCAAGCCCCTTCTT+CGG + tig0043744:7559-7578 Msa1463900:intergenic 60.0%
CGAAGAAGGGGCTTGGGGAA+CGG - tig0043744:7557-7576 Msa1463900:intron 60.0%
AAGGGGCTTGGGGAACGGAA+AGG - tig0043744:7562-7581 Msa1463900:intron 60.0%
AGAGAGCAGGGGAGCAGACC+TGG + tig0043744:3953-3972 Msa1463900:intergenic 65.0%
TGAGGCTGCCCTTCGCCAGA+AGG - tig0043744:5587-5606 Msa1463900:intron 65.0%
GCTGCCCTTCGCCAGAAGGA+GGG - tig0043744:5591-5610 Msa1463900:intron 65.0%
GGAGAGGTTGCTGTGCTGCC+TGG - tig0043744:6552-6571 Msa1463900:CDS 65.0%
GAGCCCGGACATCGCACAAC+TGG - tig0043744:7102-7121 Msa1463900:intron 65.0%
GGCTGCCCTTCGCCAGAAGG+AGG - tig0043744:5590-5609 Msa1463900:intron 70.0%
Chromosome Type Strat End Strand Name
tig0043744 gene 2995 8017 2995 ID=Msa1463900;Name=Msa1463900
tig0043744 mRNA 2995 8017 2995 ID=Msa1463900-mRNA-1;Parent=Msa1463900;Name=Msa1463900-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.92|1|1|0.92|14|467|510
tig0043744 exon 2995 3488 2995 ID=Msa1463900-mRNA-1:exon:24245;Parent=Msa1463900-mRNA-1
tig0043744 exon 3570 3644 3570 ID=Msa1463900-mRNA-1:exon:24244;Parent=Msa1463900-mRNA-1
tig0043744 exon 4362 4475 4362 ID=Msa1463900-mRNA-1:exon:24243;Parent=Msa1463900-mRNA-1
tig0043744 exon 4739 4798 4739 ID=Msa1463900-mRNA-1:exon:24242;Parent=Msa1463900-mRNA-1
tig0043744 exon 5371 5591 5371 ID=Msa1463900-mRNA-1:exon:24241;Parent=Msa1463900-mRNA-1
tig0043744 exon 5674 5788 5674 ID=Msa1463900-mRNA-1:exon:24240;Parent=Msa1463900-mRNA-1
tig0043744 exon 6202 6420 6202 ID=Msa1463900-mRNA-1:exon:24239;Parent=Msa1463900-mRNA-1
tig0043744 exon 6499 6597 6499 ID=Msa1463900-mRNA-1:exon:24238;Parent=Msa1463900-mRNA-1
tig0043744 exon 6684 6749 6684 ID=Msa1463900-mRNA-1:exon:24237;Parent=Msa1463900-mRNA-1
tig0043744 exon 6841 6924 6841 ID=Msa1463900-mRNA-1:exon:24236;Parent=Msa1463900-mRNA-1
tig0043744 exon 7059 7118 7059 ID=Msa1463900-mRNA-1:exon:24235;Parent=Msa1463900-mRNA-1
tig0043744 exon 7203 7487 7203 ID=Msa1463900-mRNA-1:exon:24234;Parent=Msa1463900-mRNA-1
tig0043744 exon 7812 7859 7812 ID=Msa1463900-mRNA-1:exon:24233;Parent=Msa1463900-mRNA-1
tig0043744 exon 7958 8017 7958 ID=Msa1463900-mRNA-1:exon:24232;Parent=Msa1463900-mRNA-1
tig0043744 CDS 7958 8017 7958 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 7812 7859 7812 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 7203 7487 7203 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 7059 7118 7059 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 6841 6924 6841 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 6684 6749 6684 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 6499 6597 6499 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 6202 6420 6202 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 5674 5788 5674 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 5371 5591 5371 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 4739 4798 4739 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 4362 4475 4362 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 3570 3644 3570 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 CDS 3462 3488 3462 ID=Msa1463900-mRNA-1:cds;Parent=Msa1463900-mRNA-1
tig0043744 three_prime_UTR 2995 3461 2995 ID=Msa1463900-mRNA-1:three_prime_utr;Parent=Msa1463900-mRNA-1
Gene Sequence

>Msa1463900

GAAGAGCTTTCCAAAAAACAGGCTACTCAAGAATCTACAATAAGGAAACTTAGGGCTCAGATTAGAGATCTTGAGGAGGAGAAAAAAGGTTTGACTACTAAACTTCAGGTGGAGGAGAATAAAGTAGAAAGCATCAAGAGGGACAAGACAGCTACAGAGAAGTTGTTGCAAGAAACAATAGAAAAACATCAAAATGAACTCGCAGTGCAGAAAGAGTATTACACTAATGCTTTGGCTGCTGCTAAGGAGTCTGAAGCATTAGCAGAGGCTCGAGCAAACAATGAAGCAAGAACTGAGCTAGAGAGTCGTCTAAGAGAAGCCGAGGAACGTGAATCTATGCTAGTCCAGGCACTTGAAGAGCTGAGACAAACATTAAGTAGAAAGGAACAGCAGGCTGTTTTTAAAGAAGACATGCTCTGTAGAGACATCGAGGATCTTCAAAAACGTTACCAGGCAAGTGAAAGACGTTGTGAGGAACTGATTACACAAGTTCCAGAATCTACAAGGCCACTTTTAAGGCAAATTGAAGCCATGCAGGATTCAAATGCCAGAAGAGCTGAAGCTTGGGCTGCTGTTGAAAGAACTCTTAATTCTCGACTACAGGAAGCCGAGGCTAAAGCTGCAACTGCTGAAGAAAGAGAGAGATCTGTGAATGATCGCTTGTCTCAAACCTTGTCTCGAATTAATGTTCTTGAGGCTCAGATTTCATGTCTTAGGGCAGAACAAACTCAATTAAGTAGGACCCTTGAAAAGGAGAGACAAAGGGCAGCTGAAAGTAGGCAGGAATATCTTGCTGCAAAGGAGGAAGCTGACACTCAAGAAGGTCGTGCTAGACAGTTTGAGGAAGAGATTAGAGACATACGACAGAAACACAAGCAAGAGTTGCAGGAGGCATTGATACACAGGGAGCTTCTTCAGCAGGAAATAGAAAAAGAAAAGGCTGCTCGATCAGATCTGGAAAGGACTGTTCGCGCTCATTCTGCGCCATCATCAGAACAAACTTCCACAACAAAGCATAATTCTGCTTTTGAGAATGGGAATCTGTCCCGAAAACTTTCTACTGCAAGCTCTCTTGGAAGCATGGAAGAAAGCTATTTTCTTCAAGCATCACTGGATTCATCTGACAGTTCTTCTGAACGGAGAAATCCGGGAGAACTAAGCATGAGTCCTTACTATATGAAGAGCATGACACCCAGTTCTTTTGAGGCTGCCCTTCGCCAGAAGGAGGGTGAACTTGCTTCGTATATGTCACGCCTGGCATCACTGGAATCTATTCGTGATTCTCTTGCTGAAGAGTTGGTCAAATTGACAGCACAGTGTGAAAAGCTGCGTGGAGAGGTTGCTGTGCTGCCTGGCTTAAAATCAGAGCTAGAAGCACTGAGGAGGAGGCACTCTGCTGCTTTGGAGTTGATGGGTGAACGTGATGAAGAGCTGGAGGAACTTCGTGCGGATATTGTCGATTTAAAGGAAATGTACAGAGAACAAGTCAACTTACTTGTGAATAAGATCCAGATAATGAGTTCATCAACCTAA

Protein sequence

>Msa1463900

EELSKKQATQESTIRKLRAQIRDLEEEKKGLTTKLQVEENKVESIKRDKTATEKLLQETIEKHQNELAVQKEYYTNALAAAKESEALAEARANNEARTELESRLREAEERESMLVQALEELRQTLSRKEQQAVFKEDMLCRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQDSNARRAEAWAAVERTLNSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSRTLEKERQRAAESRQEYLAAKEEADTQEGRARQFEEEIRDIRQKHKQELQEALIHRELLQQEIEKEKAARSDLERTVRAHSAPSSEQTSTTKHNSAFENGNLSRKLSTASSLGSMEESYFLQASLDSSDSSSERRNPGELSMSPYYMKSMTPSSFEAALRQKEGELASYMSRLASLESIRDSLAEELVKLTAQCEKLRGEVAVLPGLKSELEALRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQIMSSST*