Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133910 | I3SR39 | 95.804 | 286 | 10 | 2 | 1 | 286 | 1 | 284 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044710 | Msa0133910 | 0.804735 | 1.872902e-49 | -8.615850e-47 |
| Msa0049400 | Msa0133910 | -0.837442 | 5.186558e-57 | -8.615850e-47 |
| Msa0067150 | Msa0133910 | 0.847335 | 1.234590e-59 | -8.615850e-47 |
| Msa0071240 | Msa0133910 | 0.805689 | 1.182590e-49 | -8.615850e-47 |
| Msa0133910 | Msa0136390 | 0.818736 | 1.677447e-52 | -8.615850e-47 |
| Msa0133910 | Msa0154770 | 0.932096 | 1.419884e-94 | -8.615850e-47 |
| Msa0133910 | Msa0178990 | 0.826240 | 3.023774e-54 | -8.615850e-47 |
| Msa0133910 | Msa0288240 | 0.837166 | 6.102146e-57 | -8.615850e-47 |
| Msa0133910 | Msa0302650 | 0.800337 | 1.511442e-48 | -8.615850e-47 |
| Msa0133910 | Msa0326670 | 0.810720 | 1.001881e-50 | -8.615850e-47 |
| Msa0133910 | Msa0426810 | 0.815314 | 9.849300e-52 | -8.615850e-47 |
| Msa0133910 | Msa0493920 | 0.802130 | 6.491994e-49 | -8.615850e-47 |
| Msa0133910 | Msa0508610 | 0.805702 | 1.175319e-49 | -8.615850e-47 |
| Msa0133910 | Msa0511720 | -0.806946 | 6.424032e-50 | -8.615850e-47 |
| Msa0133910 | Msa0617830 | 0.818954 | 1.496710e-52 | -8.615850e-47 |
| Msa0133910 | Msa0618010 | 0.817442 | 3.291129e-52 | -8.615850e-47 |
| Msa0133910 | Msa0669850 | 0.801593 | 8.370493e-49 | -8.615850e-47 |
| Msa0133910 | Msa0789270 | 0.806307 | 8.765950e-50 | -8.615850e-47 |
| Msa0133910 | Msa0789280 | 0.805230 | 1.475700e-49 | -8.615850e-47 |
| Msa0133910 | Msa0789290 | 0.801790 | 7.623351e-49 | -8.615850e-47 |
| Msa0133910 | Msa0789300 | 0.800275 | 1.555429e-48 | -8.615850e-47 |
| Msa0133910 | Msa0792790 | -0.837996 | 3.737898e-57 | -8.615850e-47 |
| Msa0133910 | Msa1187520 | 0.817267 | 3.603272e-52 | -8.615850e-47 |
| Msa0133910 | Msa1267260 | 0.803113 | 4.070917e-49 | -8.615850e-47 |
| Msa0133910 | Msa1282920 | 0.819399 | 1.185545e-52 | -8.615850e-47 |
| Msa0133910 | Msa1397970 | 0.817119 | 3.889464e-52 | -8.615850e-47 |
| Msa0133910 | Msa1452470 | 0.813919 | 2.006018e-51 | -8.615850e-47 |
| Msa0133910 | Msa1454110 | 0.804914 | 1.718179e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133910 | MtrunA17_Chr1g0204021 | 95.804 | 286 | 10 | 2 | 1 | 286 | 1 | 284 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0133910 | AT5G51880.1 | 67.660 | 235 | 72 | 2 | 52 | 286 | 20 | 250 | 1.46e-107 | 312 |
Find 66 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTTTGGTAACATTTC+TGG | 0.127833 | 1_3:-65296779 | None:intergenic |
| AACCTATATAATCTAATATT+TGG | 0.132507 | 1_3:-65294670 | None:intergenic |
| CTGTTCTTGCTGATTCTATT+TGG | 0.169459 | 1_3:+65294581 | Msa0133910:CDS |
| GCTGATTCTATTTGGGATTC+TGG | 0.178268 | 1_3:+65294589 | Msa0133910:CDS |
| GGTTTGATGGAAGGCCATTT+TGG | 0.200195 | 1_3:-65294286 | None:intergenic |
| GTGTGTATCGTTCCTCTATT+TGG | 0.276967 | 1_3:-65294195 | None:intergenic |
| TGTTCTTGCTGATTCTATTT+GGG | 0.287853 | 1_3:+65294582 | Msa0133910:CDS |
| TTTACTCATCAAGGAAGTTT+AGG | 0.292415 | 1_3:+65294505 | Msa0133910:CDS |
| ATATCGTCAAGCGGTTCTTC+AGG | 0.324950 | 1_3:+65294161 | Msa0133910:CDS |
| AAACAACAACCGACCCAAAA+TGG | 0.337133 | 1_3:+65294272 | Msa0133910:CDS |
| ATTGAAACTGCTGAGGGAAT+TGG | 0.349090 | 1_3:+65294481 | Msa0133910:CDS |
| TAGAGATAATGATCGAATTT+CGG | 0.362145 | 1_3:+65294549 | Msa0133910:CDS |
| GGAGGAGAAACAGTCTTCTA+TGG | 0.362711 | 1_3:+65296558 | Msa0133910:CDS |
| AGATGAATCTGTAGGTTTGC+TGG | 0.376051 | 1_3:-65296520 | None:intergenic |
| TCATCTTCTGATCGTTTAGT+TGG | 0.379584 | 1_3:+65296537 | Msa0133910:CDS |
| TGCAGTAGTTTAAAATCTAC+AGG | 0.388657 | 1_3:-65297046 | None:intergenic |
| TACAAAGTTGGTCAACGGTT+TGG | 0.409112 | 1_3:+65296384 | Msa0133910:CDS |
| CTGGTATATTCTTCATCTGA+AGG | 0.431903 | 1_3:+65296867 | Msa0133910:three_prime_UTR |
| ATGGCACTCTTGCACATTCA+TGG | 0.434758 | 1_3:+65296733 | Msa0133910:CDS |
| CAAGAGTGCCATCCCTTCAA+TGG | 0.441258 | 1_3:-65296722 | None:intergenic |
| ATCGATGAGAGTAATGATCT+TGG | 0.448560 | 1_3:+65296414 | Msa0133910:CDS |
| CTATAAGCTTCACCTTTAGC+TGG | 0.453796 | 1_3:-65294529 | None:intergenic |
| CAAATAGAATCAGCAAGAAC+AGG | 0.457794 | 1_3:-65294580 | None:intergenic |
| ATCCAAATATTAGATTATAT+AGG | 0.468123 | 1_3:+65294668 | Msa0133910:CDS |
| ACGAGATTTCGATCTCTTCA+CGG | 0.469965 | 1_3:+65294336 | Msa0133910:CDS |
| TCTTCTGATCGTTTAGTTGG+AGG | 0.471044 | 1_3:+65296540 | Msa0133910:CDS |
| AAGAAATAGCATTGTGGCTG+AGG | 0.471528 | 1_3:+65296584 | Msa0133910:CDS |
| ATGCCTTGTATCAAATTCTC+TGG | 0.474126 | 1_3:+65296848 | Msa0133910:three_prime_UTR |
| TTGATATCGAAGCTTACAAA+AGG | 0.479734 | 1_3:+65294116 | Msa0133910:CDS |
| TGTAAAATATGTCTTTCGTT+CGG | 0.480181 | 1_3:+65296798 | Msa0133910:CDS |
| TTACAGGTTGCTCCCATTGA+AGG | 0.491280 | 1_3:+65296709 | Msa0133910:intron |
| GTAGGGAGGAAGGGAGCGTA+AGG | 0.501839 | 1_3:+65294221 | Msa0133910:CDS |
| TCGGATGTTGTATTTGCTTG+AGG | 0.515517 | 1_3:+65296817 | Msa0133910:CDS |
| GTTTATTTGAGTGGCGGACC+TGG | 0.517926 | 1_3:+65296468 | Msa0133910:CDS |
| GGAACGATACACACCTCGTA+GGG | 0.520041 | 1_3:+65294204 | Msa0133910:CDS |
| GCCTTGGATTTAACTTCACC+AGG | 0.523946 | 1_3:-65296486 | None:intergenic |
| TTGTATTTCAGGTACAAAGT+TGG | 0.529640 | 1_3:+65296372 | Msa0133910:intron |
| AAGAGTGCCATCCCTTCAAT+GGG | 0.530149 | 1_3:-65296721 | None:intergenic |
| TACACACCTCGTAGGGAGGA+AGG | 0.532568 | 1_3:+65294211 | Msa0133910:CDS |
| TATCGTCAAGCGGTTCTTCA+GGG | 0.532995 | 1_3:+65294162 | Msa0133910:CDS |
| GAGAGTAATGATCTTGGAGA+TGG | 0.540105 | 1_3:+65296420 | Msa0133910:CDS |
| TACAGGTTGCTCCCATTGAA+GGG | 0.545508 | 1_3:+65296710 | Msa0133910:intron |
| ACTTTGCTAGTTTATTTGAG+TGG | 0.558771 | 1_3:+65296459 | Msa0133910:CDS |
| GGGAGGAAGGGAGCGTAAGG+AGG | 0.570609 | 1_3:+65294224 | Msa0133910:CDS |
| GGAAGTTTAGGTCCAGCTAA+AGG | 0.579515 | 1_3:+65294517 | Msa0133910:CDS |
| CGATCAGAAGATGAATCTGT+AGG | 0.582135 | 1_3:-65296528 | None:intergenic |
| TCAGGTACAAAGTTGGTCAA+CGG | 0.585507 | 1_3:+65296379 | Msa0133910:intron |
| ACACACCTCGTAGGGAGGAA+GGG | 0.587796 | 1_3:+65294212 | Msa0133910:CDS |
| GGTTGCTCCCATTGAAGGGA+TGG | 0.588083 | 1_3:+65296714 | Msa0133910:intron |
| ACCTGGTGAAGTTAAATCCA+AGG | 0.588470 | 1_3:+65296485 | Msa0133910:CDS |
| GGCATTCATTGAAACTGCTG+AGG | 0.593567 | 1_3:+65294474 | Msa0133910:CDS |
| TTGCTAGTTTATTTGAGTGG+CGG | 0.608800 | 1_3:+65296462 | Msa0133910:CDS |
| ATTCGAGGGAAAGCTGCTGT+AGG | 0.610629 | 1_3:+65294640 | Msa0133910:CDS |
| GGAGCGACGAAACCAAATAG+AGG | 0.610911 | 1_3:+65294183 | Msa0133910:CDS |
| ATATCGAAGCTTACAAAAGG+CGG | 0.612848 | 1_3:+65294119 | Msa0133910:CDS |
| AATTTGAAAAGTTCTAGTCA+AGG | 0.624516 | 1_3:-65297116 | None:intergenic |
| GCATTCATTGAAACTGCTGA+GGG | 0.636238 | 1_3:+65294475 | Msa0133910:CDS |
| TTTCTGATATAAGAATTCGA+GGG | 0.649354 | 1_3:+65294626 | Msa0133910:CDS |
| AGGAACGATACACACCTCGT+AGG | 0.654477 | 1_3:+65294203 | Msa0133910:CDS |
| GAAGCCAGAAATGTTACCAA+AGG | 0.654558 | 1_3:+65296775 | Msa0133910:CDS |
| ATACCAGAGAATTTGATACA+AGG | 0.662856 | 1_3:-65296851 | None:intergenic |
| ACGATACACACCTCGTAGGG+AGG | 0.666557 | 1_3:+65294207 | Msa0133910:CDS |
| GGCGGTCTGAAATCGAAGAG+AGG | 0.678046 | 1_3:+65294137 | Msa0133910:CDS |
| ACGCTCCCTTCCTCCCTACG+AGG | 0.685966 | 1_3:-65294217 | None:intergenic |
| AAGAGAGGTATATCGTCAAG+CGG | 0.696308 | 1_3:+65294152 | Msa0133910:CDS |
| TGGTTCAAGAAATAGCATTG+TGG | 0.705639 | 1_3:+65296578 | Msa0133910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACTAAAAAAAATATCAA+TGG | + | chr1_3:65294072-65294091 | Msa0133910:exon | 10.0% |
| !!! | AAAAGATTTTATGAATTTTA+AGG | + | chr1_3:65295066-65295085 | Msa0133910:intron | 10.0% |
| !!! | TTTAATAAATTAGATTTTGA+TGG | - | chr1_3:65295589-65295608 | None:intergenic | 10.0% |
| !!! | TCAAAAAGAAATAATTTTGA+AGG | - | chr1_3:65294100-65294119 | None:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | - | chr1_3:65294400-65294419 | None:intergenic | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | + | chr1_3:65294668-65294687 | Msa0133910:CDS | 15.0% |
| !! | AACCTATATAATCTAATATT+TGG | - | chr1_3:65294673-65294692 | None:intergenic | 15.0% |
| !!! | AAGATTTTAAAAGATTTTGT+AGG | + | chr1_3:65294926-65294945 | Msa0133910:intron | 15.0% |
| !!! | ATTTTCAATTTGAATTTCAA+TGG | + | chr1_3:65294986-65295005 | Msa0133910:intron | 15.0% |
| !! | ATATAAATAGCTTATACATA+AGG | + | chr1_3:65296120-65296139 | Msa0133910:intron | 15.0% |
| !! | TATAAATAGCTTATACATAA+GGG | + | chr1_3:65296121-65296140 | Msa0133910:intron | 15.0% |
| !!! | TTTTAGTAATACGAGATTTT+TGG | - | chr1_3:65294062-65294081 | None:intergenic | 20.0% |
| !! | GAATAATTCACAGATAAAAT+TGG | - | chr1_3:65294401-65294420 | None:intergenic | 20.0% |
| !! | GTTGAAAACAACTTAATATA+TGG | - | chr1_3:65294809-65294828 | None:intergenic | 20.0% |
| !!! | TTTACATCATACGATTTTAA+AGG | + | chr1_3:65295010-65295029 | Msa0133910:intron | 20.0% |
| !!! | ACGATTTTAAAGGATTTTAA+AGG | + | chr1_3:65295020-65295039 | Msa0133910:intron | 20.0% |
| !!! | AAGGATTTTAAAGGATTTTA+TGG | + | chr1_3:65295029-65295048 | Msa0133910:intron | 20.0% |
| !! | CAAAATCATTCAAATTTCAA+AGG | - | chr1_3:65295616-65295635 | None:intergenic | 20.0% |
| !!! | CTTTGAAATTTGAATGATTT+TGG | + | chr1_3:65295614-65295633 | Msa0133910:intron | 20.0% |
| !! | TTTAATTATGAAAAAGTCTG+TGG | - | chr1_3:65295768-65295787 | None:intergenic | 20.0% |
| !! | TATTCTCAATCAAACTATAA+GGG | - | chr1_3:65295815-65295834 | None:intergenic | 20.0% |
| !! | TTATTCTCAATCAAACTATA+AGG | - | chr1_3:65295816-65295835 | None:intergenic | 20.0% |
| !! | TTGCTATAAATGTTTAGTTA+AGG | + | chr1_3:65295902-65295921 | Msa0133910:intron | 20.0% |
| !! | TGCTATAAATGTTTAGTTAA+GGG | + | chr1_3:65295903-65295922 | Msa0133910:intron | 20.0% |
| !! | ATAAGCTATTTATATAGCAA+AGG | - | chr1_3:65296115-65296134 | None:intergenic | 20.0% |
| !! | ACACATGATATCTTTAAATT+TGG | + | chr1_3:65296302-65296321 | Msa0133910:intron | 20.0% |
| !!! | TGATACAATTTTGATTTTAC+AGG | + | chr1_3:65296693-65296712 | Msa0133910:intron | 20.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | + | chr1_3:65294420-65294439 | Msa0133910:intron | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | + | chr1_3:65294453-65294472 | Msa0133910:CDS | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | + | chr1_3:65294549-65294568 | Msa0133910:CDS | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | + | chr1_3:65294625-65294644 | Msa0133910:CDS | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | + | chr1_3:65294626-65294645 | Msa0133910:CDS | 25.0% |
| !!! | AAGTTGTTTTCAACTTGTTT+CGG | + | chr1_3:65294815-65294834 | Msa0133910:intron | 25.0% |
| !!! | CATGATTTTAAAAGACAATC+AGG | + | chr1_3:65294963-65294982 | Msa0133910:intron | 25.0% |
| !!! | TATTTTTATGAGAGATAGAG+AGG | + | chr1_3:65295162-65295181 | Msa0133910:intron | 25.0% |
| !! | ATTTTTATGAGAGATAGAGA+GGG | + | chr1_3:65295163-65295182 | Msa0133910:intron | 25.0% |
| ! | ATGAAGACATAAGATTTCTT+GGG | - | chr1_3:65295520-65295539 | None:intergenic | 25.0% |
| ! | ATCACTTAAAAAAAGTCTCA+TGG | - | chr1_3:65295643-65295662 | None:intergenic | 25.0% |
| !!! | GTCATTTTAAAAAAGTCTTG+AGG | - | chr1_3:65295685-65295704 | None:intergenic | 25.0% |
| ! | TGCAATTTAAAAAAGTCTTG+TGG | - | chr1_3:65295727-65295746 | None:intergenic | 25.0% |
| !! | CAAACTATAAGGGATTTTAA+GGG | - | chr1_3:65295805-65295824 | None:intergenic | 25.0% |
| !! | TCAAACTATAAGGGATTTTA+AGG | - | chr1_3:65295806-65295825 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | + | chr1_3:65296178-65296197 | Msa0133910:intron | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | + | chr1_3:65296179-65296198 | Msa0133910:intron | 25.0% |
| !!! | TCATGCATTTTTTGTATTTC+AGG | + | chr1_3:65296361-65296380 | Msa0133910:intron | 25.0% |
| !! | AAAGACATATTTTACACCTT+TGG | - | chr1_3:65296794-65296813 | None:intergenic | 25.0% |
| ! | TGTAAAATATGTCTTTCGTT+CGG | + | chr1_3:65296798-65296817 | Msa0133910:CDS | 25.0% |
| !! | TGTTATAATTTTGCTGAATC+TGG | + | chr1_3:65296987-65297006 | Msa0133910:three_prime_UTR | 25.0% |
| TTGATATCGAAGCTTACAAA+AGG | + | chr1_3:65294116-65294135 | Msa0133910:CDS | 30.0% | |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | - | chr1_3:65294302-65294321 | None:intergenic | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | - | chr1_3:65294310-65294329 | None:intergenic | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | - | chr1_3:65294311-65294330 | None:intergenic | 30.0% |
| TGGGAAAAGAAAAAGAAGAA+GGG | - | chr1_3:65294381-65294400 | None:intergenic | 30.0% | |
| TTGGGAAAAGAAAAAGAAGA+AGG | - | chr1_3:65294382-65294401 | None:intergenic | 30.0% | |
| ATGAAAAGAAATTCTGAACC+TGG | - | chr1_3:65294441-65294460 | None:intergenic | 30.0% | |
| TTTACTCATCAAGGAAGTTT+AGG | + | chr1_3:65294505-65294524 | Msa0133910:CDS | 30.0% | |
| !! | TGTTCTTGCTGATTCTATTT+GGG | + | chr1_3:65294582-65294601 | Msa0133910:CDS | 30.0% |
| TGTATAGTTGTATAAGAACC+TGG | + | chr1_3:65294733-65294752 | Msa0133910:intron | 30.0% | |
| TCAACTAAATTAATCCAACC+AGG | - | chr1_3:65294754-65294773 | None:intergenic | 30.0% | |
| !! | GTATTGGATTAGGATTTTGA+AGG | + | chr1_3:65294878-65294897 | Msa0133910:intron | 30.0% |
| ! | TTTTTATGAGAGATAGAGAG+GGG | + | chr1_3:65295164-65295183 | Msa0133910:intron | 30.0% |
| CATGAAGACATAAGATTTCT+TGG | - | chr1_3:65295521-65295540 | None:intergenic | 30.0% | |
| TAAGCTATTTATCCAAACAG+GGG | + | chr1_3:65296180-65296199 | Msa0133910:intron | 30.0% | |
| CTAAGTTGTTTATGCAAACA+AGG | + | chr1_3:65296203-65296222 | Msa0133910:intron | 30.0% | |
| AAATGCATGACAATTAGTGA+AGG | - | chr1_3:65296351-65296370 | None:intergenic | 30.0% | |
| ! | TTGTATTTCAGGTACAAAGT+TGG | + | chr1_3:65296372-65296391 | Msa0133910:intron | 30.0% |
| ! | ACTTTGCTAGTTTATTTGAG+TGG | + | chr1_3:65296459-65296478 | Msa0133910:CDS | 30.0% |
| !! | ATGTTGCTTAATGCAAGTTT+TGG | + | chr1_3:65296642-65296661 | Msa0133910:intron | 30.0% |
| !! | TGTTGCTTAATGCAAGTTTT+GGG | + | chr1_3:65296643-65296662 | Msa0133910:intron | 30.0% |
| ATACCAGAGAATTTGATACA+AGG | - | chr1_3:65296854-65296873 | None:intergenic | 30.0% | |
| ! | TGCAGTAGTTTAAAATCTAC+AGG | - | chr1_3:65297049-65297068 | None:intergenic | 30.0% |
| ATATCGAAGCTTACAAAAGG+CGG | + | chr1_3:65294119-65294138 | Msa0133910:CDS | 35.0% | |
| GTAAGGAGGAAGAGAAAAAT+GGG | + | chr1_3:65294238-65294257 | Msa0133910:CDS | 35.0% | |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | - | chr1_3:65294298-65294317 | None:intergenic | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | + | chr1_3:65294496-65294515 | Msa0133910:CDS | 35.0% |
| CAAATAGAATCAGCAAGAAC+AGG | - | chr1_3:65294583-65294602 | None:intergenic | 35.0% | |
| !! | CTGTTCTTGCTGATTCTATT+TGG | + | chr1_3:65294581-65294600 | Msa0133910:CDS | 35.0% |
| TAGTTGTATAAGAACCTGGT+TGG | + | chr1_3:65294737-65294756 | Msa0133910:intron | 35.0% | |
| GTAAGCTCTTTATGATAGCT+CGG | + | chr1_3:65294837-65294856 | Msa0133910:intron | 35.0% | |
| TAAGCTCTTTATGATAGCTC+GGG | + | chr1_3:65294838-65294857 | Msa0133910:intron | 35.0% | |
| ATAGCTCGGGAAAACAATTT+AGG | + | chr1_3:65294851-65294870 | Msa0133910:intron | 35.0% | |
| TAGCTCGGGAAAACAATTTA+GGG | + | chr1_3:65294852-65294871 | Msa0133910:intron | 35.0% | |
| ! | AAACAATTTAGGGGGTGTAT+TGG | + | chr1_3:65294862-65294881 | Msa0133910:intron | 35.0% |
| ! | TTTTATGAGAGATAGAGAGG+GGG | + | chr1_3:65295165-65295184 | Msa0133910:intron | 35.0% |
| TGTTTAGTTAAGGGTCTGTT+TGG | + | chr1_3:65295912-65295931 | Msa0133910:intron | 35.0% | |
| !! | TCTGTTTGGATTGACTTGTT+TGG | + | chr1_3:65295926-65295945 | Msa0133910:intron | 35.0% |
| !! | CTGTTTGGATTGACTTGTTT+GGG | + | chr1_3:65295927-65295946 | Msa0133910:intron | 35.0% |
| ! | ACTTGTTTGGGTTTATCTAC+CGG | + | chr1_3:65295939-65295958 | Msa0133910:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr1_3:65296055-65296074 | None:intergenic | 35.0% |
| ATCGATGAGAGTAATGATCT+TGG | + | chr1_3:65296414-65296433 | Msa0133910:CDS | 35.0% | |
| ! | TTGCTAGTTTATTTGAGTGG+CGG | + | chr1_3:65296462-65296481 | Msa0133910:CDS | 35.0% |
| TCATCTTCTGATCGTTTAGT+TGG | + | chr1_3:65296537-65296556 | Msa0133910:CDS | 35.0% | |
| TGGTTCAAGAAATAGCATTG+TGG | + | chr1_3:65296578-65296597 | Msa0133910:CDS | 35.0% | |
| ATGTCACTATTTGCTTGCTT+TGG | + | chr1_3:65296666-65296685 | Msa0133910:intron | 35.0% | |
| TGTCACTATTTGCTTGCTTT+GGG | + | chr1_3:65296667-65296686 | Msa0133910:intron | 35.0% | |
| ! | TACACCTTTGGTAACATTTC+TGG | - | chr1_3:65296782-65296801 | None:intergenic | 35.0% |
| ATGCCTTGTATCAAATTCTC+TGG | + | chr1_3:65296848-65296867 | Msa0133910:three_prime_UTR | 35.0% | |
| CTGGTATATTCTTCATCTGA+AGG | + | chr1_3:65296867-65296886 | Msa0133910:three_prime_UTR | 35.0% | |
| ! | AAGAGAGGTATATCGTCAAG+CGG | + | chr1_3:65294152-65294171 | Msa0133910:CDS | 40.0% |
| GTGTGTATCGTTCCTCTATT+TGG | - | chr1_3:65294198-65294217 | None:intergenic | 40.0% | |
| CGTAAGGAGGAAGAGAAAAA+TGG | + | chr1_3:65294237-65294256 | Msa0133910:CDS | 40.0% | |
| AAACAACAACCGACCCAAAA+TGG | + | chr1_3:65294272-65294291 | Msa0133910:CDS | 40.0% | |
| !! | GTTTGATGGAAGGCCATTTT+GGG | - | chr1_3:65294288-65294307 | None:intergenic | 40.0% |
| ACGAGATTTCGATCTCTTCA+CGG | + | chr1_3:65294336-65294355 | Msa0133910:CDS | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | + | chr1_3:65294475-65294494 | Msa0133910:CDS | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | + | chr1_3:65294481-65294500 | Msa0133910:CDS | 40.0% | |
| CTATAAGCTTCACCTTTAGC+TGG | - | chr1_3:65294532-65294551 | None:intergenic | 40.0% | |
| ! | GCTGATTCTATTTGGGATTC+TGG | + | chr1_3:65294589-65294608 | Msa0133910:CDS | 40.0% |
| AGCTCGGGAAAACAATTTAG+GGG | + | chr1_3:65294853-65294872 | Msa0133910:intron | 40.0% | |
| ! | TTTAGGGGGTGTATTGGATT+AGG | + | chr1_3:65294868-65294887 | Msa0133910:intron | 40.0% |
| GAGAAAAGAGAGGAGATAGA+GGG | + | chr1_3:65295208-65295227 | Msa0133910:intron | 40.0% | |
| CAGTCTCGGAAAATTTCTAC+CGG | - | chr1_3:65295961-65295980 | None:intergenic | 40.0% | |
| ! | GAAATTTTCCGAGACTGTTC+AGG | + | chr1_3:65295964-65295983 | Msa0133910:intron | 40.0% |
| TATGTTCTCCTGAACAGTCT+CGG | - | chr1_3:65295975-65295994 | None:intergenic | 40.0% | |
| TAAACAACTTAGCCCCTGTT+TGG | - | chr1_3:65296195-65296214 | None:intergenic | 40.0% | |
| ! | TCAGGTACAAAGTTGGTCAA+CGG | + | chr1_3:65296379-65296398 | Msa0133910:intron | 40.0% |
| ! | TACAAAGTTGGTCAACGGTT+TGG | + | chr1_3:65296384-65296403 | Msa0133910:CDS | 40.0% |
| GAGAGTAATGATCTTGGAGA+TGG | + | chr1_3:65296420-65296439 | Msa0133910:CDS | 40.0% | |
| ACCTGGTGAAGTTAAATCCA+AGG | + | chr1_3:65296485-65296504 | Msa0133910:CDS | 40.0% | |
| !!! | GCTGGAATCATTTTTAGCCT+TGG | - | chr1_3:65296505-65296524 | None:intergenic | 40.0% |
| AGATGAATCTGTAGGTTTGC+TGG | - | chr1_3:65296523-65296542 | None:intergenic | 40.0% | |
| CGATCAGAAGATGAATCTGT+AGG | - | chr1_3:65296531-65296550 | None:intergenic | 40.0% | |
| TCTTCTGATCGTTTAGTTGG+AGG | + | chr1_3:65296540-65296559 | Msa0133910:CDS | 40.0% | |
| AAGAAATAGCATTGTGGCTG+AGG | + | chr1_3:65296584-65296603 | Msa0133910:CDS | 40.0% | |
| GAAGCCAGAAATGTTACCAA+AGG | + | chr1_3:65296775-65296794 | Msa0133910:CDS | 40.0% | |
| TCGGATGTTGTATTTGCTTG+AGG | + | chr1_3:65296817-65296836 | Msa0133910:CDS | 40.0% | |
| ATATCGTCAAGCGGTTCTTC+AGG | + | chr1_3:65294161-65294180 | Msa0133910:CDS | 45.0% | |
| TATCGTCAAGCGGTTCTTCA+GGG | + | chr1_3:65294162-65294181 | Msa0133910:CDS | 45.0% | |
| ! | GGTTTGATGGAAGGCCATTT+TGG | - | chr1_3:65294289-65294308 | None:intergenic | 45.0% |
| GGCATTCATTGAAACTGCTG+AGG | + | chr1_3:65294474-65294493 | Msa0133910:CDS | 45.0% | |
| GGAAGTTTAGGTCCAGCTAA+AGG | + | chr1_3:65294517-65294536 | Msa0133910:CDS | 45.0% | |
| GCTCGGGAAAACAATTTAGG+GGG | + | chr1_3:65294854-65294873 | Msa0133910:intron | 45.0% | |
| GGAGAAAAGAGAGGAGATAG+AGG | + | chr1_3:65295207-65295226 | Msa0133910:intron | 45.0% | |
| AGAGAGAGAGATAGAGAGAG+AGG | + | chr1_3:65295277-65295296 | Msa0133910:intron | 45.0% | |
| GAGAGAGAGATAGAGAGAGA+GGG | + | chr1_3:65295278-65295297 | Msa0133910:intron | 45.0% | |
| GAGAAGAGAGAGAGAGAGAA+GGG | + | chr1_3:65295312-65295331 | Msa0133910:intron | 45.0% | |
| AGAGAGAGACGAAGAGAGAA+GGG | + | chr1_3:65295394-65295413 | Msa0133910:intron | 45.0% | |
| AAAAGAGAGGAGAGAGGGAA+GGG | + | chr1_3:65295434-65295453 | Msa0133910:intron | 45.0% | |
| GGAGAAGAGAGAAGGAAGAA+GGG | + | chr1_3:65295455-65295474 | Msa0133910:intron | 45.0% | |
| ! | GCCTTGGATTTAACTTCACC+AGG | - | chr1_3:65296489-65296508 | None:intergenic | 45.0% |
| GGAGGAGAAACAGTCTTCTA+TGG | + | chr1_3:65296558-65296577 | Msa0133910:CDS | 45.0% | |
| TTACAGGTTGCTCCCATTGA+AGG | + | chr1_3:65296709-65296728 | Msa0133910:intron | 45.0% | |
| TACAGGTTGCTCCCATTGAA+GGG | + | chr1_3:65296710-65296729 | Msa0133910:intron | 45.0% | |
| !! | AAGAGTGCCATCCCTTCAAT+GGG | - | chr1_3:65296724-65296743 | None:intergenic | 45.0% |
| ATGGCACTCTTGCACATTCA+TGG | + | chr1_3:65296733-65296752 | Msa0133910:CDS | 45.0% | |
| GGAGCGACGAAACCAAATAG+AGG | + | chr1_3:65294183-65294202 | Msa0133910:CDS | 50.0% | |
| AGGAACGATACACACCTCGT+AGG | + | chr1_3:65294203-65294222 | Msa0133910:CDS | 50.0% | |
| GGAACGATACACACCTCGTA+GGG | + | chr1_3:65294204-65294223 | Msa0133910:CDS | 50.0% | |
| !! | GATGGAAGGCCATTTTGGGT+CGG | - | chr1_3:65294284-65294303 | None:intergenic | 50.0% |
| ATTCGAGGGAAAGCTGCTGT+AGG | + | chr1_3:65294640-65294659 | Msa0133910:CDS | 50.0% | |
| GGAGAGAAGGGAGAAAAGAG+AGG | + | chr1_3:65295198-65295217 | Msa0133910:intron | 50.0% | |
| AGAGAGATAGAGAGAGAGGG+AGG | + | chr1_3:65295281-65295300 | Msa0133910:intron | 50.0% | |
| GAGAGATAGAGAGAGAGGGA+GGG | + | chr1_3:65295282-65295301 | Msa0133910:intron | 50.0% | |
| GGAGAAGAGAGAGAGAGAGA+AGG | + | chr1_3:65295311-65295330 | Msa0133910:intron | 50.0% | |
| AGAGAGAGAGAAGGGAGAGA+GGG | + | chr1_3:65295320-65295339 | Msa0133910:intron | 50.0% | |
| AGAGAGAGAGGGAGAGAGAA+GGG | + | chr1_3:65295362-65295381 | Msa0133910:intron | 50.0% | |
| GAGAGAGAGACGAAGAGAGA+AGG | + | chr1_3:65295393-65295412 | Msa0133910:intron | 50.0% | |
| AAGAGAGAAGGGAGAGAGAG+AGG | + | chr1_3:65295405-65295424 | Msa0133910:intron | 50.0% | |
| AGAGAGGAGGGAGAAAAGAG+AGG | + | chr1_3:65295421-65295440 | Msa0133910:intron | 50.0% | |
| AGGGAGAAAAGAGAGGAGAG+AGG | + | chr1_3:65295428-65295447 | Msa0133910:intron | 50.0% | |
| GGGAGAAAAGAGAGGAGAGA+GGG | + | chr1_3:65295429-65295448 | Msa0133910:intron | 50.0% | |
| GAAAAGAGAGGAGAGAGGGA+AGG | + | chr1_3:65295433-65295452 | Msa0133910:intron | 50.0% | |
| GGGAGAAGAGAGAAGGAAGA+AGG | + | chr1_3:65295454-65295473 | Msa0133910:intron | 50.0% | |
| !! | GTTTATTTGAGTGGCGGACC+TGG | + | chr1_3:65296468-65296487 | Msa0133910:CDS | 50.0% |
| !! | CAAGAGTGCCATCCCTTCAA+TGG | - | chr1_3:65296725-65296744 | None:intergenic | 50.0% |
| ! | GGCGGTCTGAAATCGAAGAG+AGG | + | chr1_3:65294137-65294156 | Msa0133910:CDS | 55.0% |
| ACGATACACACCTCGTAGGG+AGG | + | chr1_3:65294207-65294226 | Msa0133910:CDS | 55.0% | |
| TACACACCTCGTAGGGAGGA+AGG | + | chr1_3:65294211-65294230 | Msa0133910:CDS | 55.0% | |
| ACACACCTCGTAGGGAGGAA+GGG | + | chr1_3:65294212-65294231 | Msa0133910:CDS | 55.0% | |
| GAGATAGAGAGGGGGAAGAG+AGG | + | chr1_3:65295173-65295192 | Msa0133910:intron | 55.0% | |
| ATAGAGAGGGGGAAGAGAGG+AGG | + | chr1_3:65295176-65295195 | Msa0133910:intron | 55.0% | |
| TAGAGAGGGGGAAGAGAGGA+GGG | + | chr1_3:65295177-65295196 | Msa0133910:intron | 55.0% | |
| GGAAGAGAGGAGGGAGAGAA+GGG | + | chr1_3:65295186-65295205 | Msa0133910:intron | 55.0% | |
| AGATAGAGAGAGAGGGAGGG+AGG | + | chr1_3:65295285-65295304 | Msa0133910:intron | 55.0% | |
| GATAGAGAGAGAGGGAGGGA+GGG | + | chr1_3:65295286-65295305 | Msa0133910:intron | 55.0% | |
| ATAGAGAGAGAGGGAGGGAG+GGG | + | chr1_3:65295287-65295306 | Msa0133910:intron | 55.0% | |
| GAGAGAGAGAGAAGGGAGAG+AGG | + | chr1_3:65295319-65295338 | Msa0133910:intron | 55.0% | |
| GAGAGAGAGAAGGGAGAGAG+GGG | + | chr1_3:65295321-65295340 | Msa0133910:intron | 55.0% | |
| AGAGAGAGAAGGGAGAGAGG+GGG | + | chr1_3:65295322-65295341 | Msa0133910:intron | 55.0% | |
| AGAGGGGAGAGAGAGAGAGA+GGG | + | chr1_3:65295351-65295370 | Msa0133910:intron | 55.0% | |
| GAGAGAGAGAGGGAGAGAGA+AGG | + | chr1_3:65295361-65295380 | Msa0133910:intron | 55.0% | |
| AGAGAAGGGAGAGAGAGAGG+AGG | + | chr1_3:65295408-65295427 | Msa0133910:intron | 55.0% | |
| GAGAAGGGAGAGAGAGAGGA+GGG | + | chr1_3:65295409-65295428 | Msa0133910:intron | 55.0% | |
| GAGGGAAGGGAGAAGAGAGA+AGG | + | chr1_3:65295447-65295466 | Msa0133910:intron | 55.0% | |
| GGTTGCTCCCATTGAAGGGA+TGG | + | chr1_3:65296714-65296733 | Msa0133910:intron | 55.0% | |
| ! | GTAGGGAGGAAGGGAGCGTA+AGG | + | chr1_3:65294221-65294240 | Msa0133910:CDS | 60.0% |
| GGGAAGAGAGGAGGGAGAGA+AGG | + | chr1_3:65295185-65295204 | Msa0133910:intron | 60.0% | |
| TAGAGAGAGAGGGAGGGAGG+GGG | + | chr1_3:65295288-65295307 | Msa0133910:intron | 60.0% | |
| GAGAGAGAAGGGAGAGAGGG+GGG | + | chr1_3:65295323-65295342 | Msa0133910:intron | 60.0% | |
| GAGAGAGGGGGGAGAAGAGA+GGG | + | chr1_3:65295334-65295353 | Msa0133910:intron | 60.0% | |
| AGAGAGGGGGGAGAAGAGAG+GGG | + | chr1_3:65295335-65295354 | Msa0133910:intron | 60.0% | |
| GAGAGGGGAGAGAGAGAGAG+AGG | + | chr1_3:65295350-65295369 | Msa0133910:intron | 60.0% | |
| ACGCTCCCTTCCTCCCTACG+AGG | - | chr1_3:65294220-65294239 | None:intergenic | 65.0% | |
| ! | GGGAGGAAGGGAGCGTAAGG+AGG | + | chr1_3:65294224-65294243 | Msa0133910:CDS | 65.0% |
| AGAGAGAGAGGGAGGGAGGG+GGG | + | chr1_3:65295289-65295308 | Msa0133910:intron | 65.0% | |
| GGAGAGAGGGGGGAGAAGAG+AGG | + | chr1_3:65295333-65295352 | Msa0133910:intron | 65.0% | |
| GAGAGAGAGGGAGGGAGGGG+GGG | + | chr1_3:65295290-65295309 | Msa0133910:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 65294050 | 65297129 | 65294050 | ID=Msa0133910;Name=Msa0133910 |
| chr1_3 | mRNA | 65294050 | 65297129 | 65294050 | ID=Msa0133910-mRNA-1;Parent=Msa0133910;Name=Msa0133910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=41|1|1|1|1|1|4|292|286 |
| chr1_3 | exon | 65294050 | 65294357 | 65294050 | ID=Msa0133910-mRNA-1:exon:22171;Parent=Msa0133910-mRNA-1 |
| chr1_3 | exon | 65294442 | 65294689 | 65294442 | ID=Msa0133910-mRNA-1:exon:22172;Parent=Msa0133910-mRNA-1 |
| chr1_3 | exon | 65296383 | 65296605 | 65296383 | ID=Msa0133910-mRNA-1:exon:22173;Parent=Msa0133910-mRNA-1 |
| chr1_3 | exon | 65296715 | 65297129 | 65296715 | ID=Msa0133910-mRNA-1:exon:22174;Parent=Msa0133910-mRNA-1 |
| chr1_3 | five_prime_UTR | 65294050 | 65294090 | 65294050 | ID=Msa0133910-mRNA-1:five_prime_utr;Parent=Msa0133910-mRNA-1 |
| chr1_3 | CDS | 65294091 | 65294357 | 65294091 | ID=Msa0133910-mRNA-1:cds;Parent=Msa0133910-mRNA-1 |
| chr1_3 | CDS | 65294442 | 65294689 | 65294442 | ID=Msa0133910-mRNA-1:cds;Parent=Msa0133910-mRNA-1 |
| chr1_3 | CDS | 65296383 | 65296605 | 65296383 | ID=Msa0133910-mRNA-1:cds;Parent=Msa0133910-mRNA-1 |
| chr1_3 | CDS | 65296715 | 65296837 | 65296715 | ID=Msa0133910-mRNA-1:cds;Parent=Msa0133910-mRNA-1 |
| chr1_3 | three_prime_UTR | 65296838 | 65297129 | 65296838 | ID=Msa0133910-mRNA-1:three_prime_utr;Parent=Msa0133910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
