AlfalfaGEDB | Msa0071240

M. sativa cultivar zhongmu-4 / Msa0071240

KEGG: K04082
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0071840
PFAM: PF07743.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071240	KEH41852.1	85.079	315	28	2	1	296	1	315	0.0	550

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071240	sp\|Q8L7K4\|HSCB_ARATH	59.024	205	77	2	57	261	47	244	5.09e-84	256

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071240	A0A072VJB2	85.079	315	28	2	1	296	1	315	0.0	550

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0071240	-0.846085	2.710940e-59	-8.615850e-47
Msa0008850	Msa0071240	0.813569	2.395898e-51	-8.615850e-47
Msa0012040	Msa0071240	0.832922	7.167559e-56	-8.615850e-47
Msa0013050	Msa0071240	-0.814221	1.720678e-51	-8.615850e-47
Msa0014800	Msa0071240	0.801722	7.874886e-49	-8.615850e-47
Msa0015300	Msa0071240	0.819719	1.001726e-52	-8.615850e-47
Msa0020630	Msa0071240	0.804353	2.250279e-49	-8.615850e-47
Msa0027540	Msa0071240	0.800105	1.684572e-48	-8.615850e-47
Msa0030380	Msa0071240	0.822891	1.858815e-53	-8.615850e-47
Msa0032610	Msa0071240	0.853414	2.427384e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071240	MtrunA17_Chr1g0176801	94.253	261	15	0	1	261	1	261	0.0	522

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0071240	AT5G06410.1	59.024	205	77	2	57	261	47	244	5.17e-85	256

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Find 75 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACTACATCCTGATT+TGG	0.379604	1_2:-42786018	Msa0071240:CDS
AACAAGAAAGGCGCTGATTG+AGG	0.510504	1_2:+42786990	None:intergenic
AAGGATTCCTGAAATTTGGG+AGG	0.589866	1_2:+42787290	None:intergenic
AAGGGTGGTGATGGAGATTG+AGG	0.538552	1_2:+42787149	None:intergenic
AAGTTGAAGAAGGTTGAAAG+AGG	0.529141	1_2:+42787227	None:intergenic
AATTAAGGATTCCTGAAATT+TGG	0.145260	1_2:+42787286	None:intergenic
AATTACGATTATTCTTCATT+TGG	0.301008	1_2:-42787095	Msa0071240:CDS
ACATTCAAAACATTCATATC+TGG	0.345173	1_2:-42783375	Msa0071240:three_prime_UTR
ACGTGCATAGCAAAGCAATA+AGG	0.440004	1_2:+42783592	None:intergenic
ACGTTGAGGAATTGAAGTTA+AGG	0.465533	1_2:+42787190	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTCGTATAAAGTTGAAGA+AGG	+	chr1_2:42783550-42783569	None:intergenic	30.0%
ATAGTTAGTGGCTAAATACA+AGG	+	chr1_2:42784332-42784351	None:intergenic	30.0%
TTTGTAGGATGATCTCAAAT+TGG	+	chr1_2:42784446-42784465	None:intergenic	30.0%
AAAATCAAGGACAAATTTGG+TGG	-	chr1_2:42784463-42784482	Msa0071240:intron	30.0%
AAAGAAACTACATCCTGATT+TGG	-	chr1_2:42784746-42784765	Msa0071240:intron	30.0%
ATGTAAATTGCTCTTGACAA+AGG	+	chr1_2:42785030-42785049	None:intergenic	30.0%
TTTGTCAAGAGCAATTTACA+TGG	-	chr1_2:42785029-42785048	Msa0071240:intron	30.0%
TGCATCATCAATTTGAATCT+TGG	+	chr1_2:42785071-42785090	None:intergenic	30.0%
TAAATTAAATGTGTCGCAAC+AGG	-	chr1_2:42785206-42785225	Msa0071240:intron	30.0%
TTATATCCATACAATTGCGA+TGG	-	chr1_2:42785646-42785665	Msa0071240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	42783348	42787438	42783348	ID=Msa0071240;Name=Msa0071240
chr1_2	mRNA	42783348	42787438	42783348	ID=Msa0071240-mRNA-1;Parent=Msa0071240;Name=Msa0071240-mRNA-1;_AED=0.09;_eAED=0.09;_QI=119\|0.85\|0.87\|1\|0.85\|0.75\|8\|297\|296
chr1_2	exon	42783348	42783755	42783348	ID=Msa0071240-mRNA-1:exon:12990;Parent=Msa0071240-mRNA-1
chr1_2	exon	42784367	42784474	42784367	ID=Msa0071240-mRNA-1:exon:12989;Parent=Msa0071240-mRNA-1
chr1_2	exon	42784606	42784674	42784606	ID=Msa0071240-mRNA-1:exon:12988;Parent=Msa0071240-mRNA-1
chr1_2	exon	42785409	42785474	42785409	ID=Msa0071240-mRNA-1:exon:12987;Parent=Msa0071240-mRNA-1
chr1_2	exon	42785736	42785825	42785736	ID=Msa0071240-mRNA-1:exon:12986;Parent=Msa0071240-mRNA-1
chr1_2	exon	42786001	42786097	42786001	ID=Msa0071240-mRNA-1:exon:12985;Parent=Msa0071240-mRNA-1
chr1_2	exon	42786924	42787328	42786924	ID=Msa0071240-mRNA-1:exon:12984;Parent=Msa0071240-mRNA-1
chr1_2	exon	42787375	42787438	42787375	ID=Msa0071240-mRNA-1:exon:12983;Parent=Msa0071240-mRNA-1
chr1_2	five_prime_UTR	42787375	42787438	42787375	ID=Msa0071240-mRNA-1:five_prime_utr;Parent=Msa0071240-mRNA-1
chr1_2	five_prime_UTR	42787274	42787328	42787274	ID=Msa0071240-mRNA-1:five_prime_utr;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42786924	42787273	42786924	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42786001	42786097	42786001	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42785736	42785825	42785736	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42785409	42785474	42785409	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42784606	42784674	42784606	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42784367	42784474	42784367	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	CDS	42783645	42783755	42783645	ID=Msa0071240-mRNA-1:cds;Parent=Msa0071240-mRNA-1
chr1_2	three_prime_UTR	42783348	42783644	42783348	ID=Msa0071240-mRNA-1:three_prime_utr;Parent=Msa0071240-mRNA-1

Gene Sequence

>Msa0071240

ATGACAAAGAAATATCTCTCCAAACCTCTTTCAACCTTCTTCAACTTTATACGAACACGAACCTTAACTTCAATTCCTCAACGTGTATCACCTTATCTTAAACCTCAATCTCCATCACCACCCTTTACACCGTATCATACTCATCATCTATATCATAATTACGATTATTCTTCATTTGGGTCTCTACGATTTTGCAAAAAAAGTTTGTGTTCAAAACCTGCGCACAATTTTCAACCAACATGCTGGAATTGTCACGCTGTTCCTCAATCAGCGCCTTTCTTGTTCTGCCAGTCGTGTCGTTGCATTCAACCTGTTGATCGTTCAAATGACTATTTCCATATTTTTGGATTGGAGAGGAAGTATGACGTAGGGGGTATTGATTTGGAGGGGAAGTACAAGGAGTGGCAAAAGAAACTACATCCTGATTTGGTGCATTCAAAATCTCAGGAAGAAAGAGATTATGCTGCTGAACAATCTGCAAGAGTGATTGATGCATATCGTACACTTAGCAAACCTTTGTCAAGAGCAATTTACATGTTGAAGCTTGATGGAGTGGAAGTTGATGAGGAGCAGACAATTTCAGATCCAGAATTATTAGCAGAGATTATGGAAATCAGGGAAGCCGTTGAAGAAGCAACTAACTCTGAGGCTTTGAATCAGATTCGCTCTGAGATGCAGGAGAAAATGCAAAGTTGGTCTAATGCCTTCGCTGATGCTTTCCAAAAGCGGGACTTTGAAGAAGCAAAGAATGCAATTAGAAGAATGATTTATTATACTCGTGCTTCCAAGATGGAGCTATTCCTTGGGGCGGCAAATGGTAGATCATTGCTGAGTATGAACTACGAAGGATTTGATTTGCTGATTGCAATGAAGTGGCCTATGAGTAAATAA

Protein sequence

>Msa0071240

MTKKYLSKPLSTFFNFIRTRTLTSIPQRVSPYLKPQSPSPPFTPYHTHHLYHNYDYSSFGSLRFCKKSLCSKPAHNFQPTCWNCHAVPQSAPFLFCQSCRCIQPVDRSNDYFHIFGLERKYDVGGIDLEGKYKEWQKKLHPDLVHSKSQEERDYAAEQSARVIDAYRTLSKPLSRAIYMLKLDGVEVDEEQTISDPELLAEIMEIREAVEEATNSEALNQIRSEMQEKMQSWSNAFADAFQKRDFEEAKNAIRRMIYYTRASKMELFLGAANGRSLLSMNYEGFDLLIAMKWPMSK*