AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0049400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049400 MtrunA17_Chr7g0237091 97.317 410 11 0 1 410 1 410 0.0 818
Msa0049400 MtrunA17_Chr2g0287641 61.951 410 149 5 5 410 2 408 0.0 520
Msa0049400 MtrunA17_Chr6g0485111 31.841 402 252 9 11 409 16 398 1.59e-56 191
Msa0049400 MtrunA17_Chr8g0390691 31.088 386 233 9 31 409 34 393 9.97e-52 178
Msa0049400 MtrunA17_Chr1g0169271 28.796 382 246 8 31 408 51 410 1.97e-48 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0049400 AT1G16180.2 81.122 392 72 1 21 410 21 412 0.0 632
Msa0049400 AT1G16180.1 81.122 392 72 1 21 410 21 412 0.0 632
Msa0049400 AT3G06170.1 64.634 410 139 6 4 410 2 408 0.0 530
Msa0049400 AT2G33205.1 33.681 383 226 10 31 408 49 408 5.60e-57 193
Msa0049400 AT2G33205.8 33.681 383 228 10 31 408 49 410 6.74e-57 192
Msa0049400 AT2G33205.5 33.681 383 228 10 31 408 49 410 6.74e-57 192
Msa0049400 AT3G24460.2 31.675 382 240 8 31 409 40 403 2.74e-56 191
Msa0049400 AT3G24460.1 31.675 382 240 8 31 409 40 403 2.74e-56 191
Msa0049400 AT4G13345.1 33.234 334 204 5 77 409 77 392 7.12e-52 179
Msa0049400 AT2G33205.9 32.973 370 222 10 31 395 49 397 2.58e-51 177
Msa0049400 AT4G13345.2 32.635 334 206 5 77 409 77 392 7.25e-51 176
Msa0049400 AT4G13345.6 32.635 334 206 5 77 409 77 392 7.25e-51 176
Msa0049400 AT2G33205.7 34.951 309 176 9 105 408 12 300 9.58e-49 168
Msa0049400 AT2G33205.2 34.951 309 176 9 105 408 27 315 1.70e-48 168
Msa0049400 AT4G13345.4 32.812 320 196 5 77 395 77 378 4.79e-46 163
Msa0049400 AT2G33205.6 32.258 341 205 10 31 366 49 368 5.93e-43 154
Msa0049400 AT4G13345.5 31.488 289 179 5 77 364 77 347 1.04e-37 140
Msa0049400 AT2G33205.3 31.746 252 162 6 31 277 49 295 7.87e-33 126
Msa0049400 AT2G33205.4 31.746 252 162 6 31 277 49 295 7.87e-33 126
Msa0049400 AT4G13345.3 33.333 195 128 2 77 270 77 270 7.98e-29 114
Msa0049400 AT4G13345.7 33.333 195 128 2 77 270 77 270 7.98e-29 114

Find 117 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGGAAATTGGGGATTT+TGG 0.163605 1_2:-2686564 None:intergenic
CCACATCGATTGGTGGAATT+AGG 0.188928 1_2:-2686605 None:intergenic
TAAACTATATATATTTATTC+AGG 0.217656 1_2:-2691450 None:intergenic
CATTCTTATTTACAGGTAAA+TGG 0.242680 1_2:+2690486 Msa0049400:intron
CGGTTGGTACGCGTTGTTTC+GGG 0.246839 1_2:-2686414 None:intergenic
TTCCACTGGCTCTCTTACTT+TGG 0.277354 1_2:+2690626 Msa0049400:CDS
TCCACTGGCTCTCTTACTTT+GGG 0.280555 1_2:+2690627 Msa0049400:CDS
AGTTATCTGTTGGTTCCTTC+TGG 0.282675 1_2:+2689236 Msa0049400:CDS
TGTTCAAGTTGTGCTCTTGT+TGG 0.294130 1_2:+2689538 Msa0049400:CDS
CAACTGCTTTGCTATACTTA+TGG 0.303105 1_2:+2691203 Msa0049400:CDS
CGTGGGGTGGCCTTCAGTTT+GGG 0.314110 1_2:+2691159 Msa0049400:CDS
GCAGTTTATGTTTGCATCTT+CGG 0.316171 1_2:+2691514 Msa0049400:three_prime_UTR
GCAGAAACAATATCGAAGTT+TGG 0.320810 1_2:+2689497 Msa0049400:intron
CACATCGATTGGTGGAATTA+GGG 0.330941 1_2:-2686604 None:intergenic
TTTCATTTCTTCACGCCATC+TGG 0.334760 1_2:+2689804 Msa0049400:CDS
CTCGTGATGGCTTGCATCAT+GGG 0.341294 1_2:+2689199 Msa0049400:CDS
GGGTCCGGATTGTCACTTGC+TGG 0.349478 1_2:+2691179 Msa0049400:CDS
GAAGACGAGTTAGGAAATAA+AGG 0.349628 1_2:-2686492 None:intergenic
ACGTGGGGTGGCCTTCAGTT+TGG 0.350578 1_2:+2691158 Msa0049400:CDS
TCGGTTGGTACGCGTTGTTT+CGG 0.354779 1_2:-2686415 None:intergenic
CCTCGTGATGGCTTGCATCA+TGG 0.360125 1_2:+2689198 Msa0049400:CDS
AGCAGGATGCAAAGCTACTA+TGG 0.375060 1_2:-2689889 None:intergenic
CACTATTCTGGCTACTATGA+TGG 0.378652 1_2:+2689152 Msa0049400:CDS
GTGTATTCTGCCGTGCGTGC+TGG 0.380861 1_2:+2690675 Msa0049400:CDS
AATATTGTTGTGTCAGACTT+TGG 0.386298 1_2:-2686465 None:intergenic
GCAGTTCTTCGTGTTAGCTT+TGG 0.391753 1_2:+2689114 Msa0049400:CDS
TTGGATATGATGAGCAGTTC+TGG 0.396236 1_2:+2689591 Msa0049400:CDS
AAGGCATATGAATATGTAAC+TGG 0.407200 1_2:-2691043 None:intergenic
ACCATTGCACTCGTAATCTC+TGG 0.409135 1_2:-2690580 None:intergenic
CAAACAAATATATAGTAGTT+AGG 0.409658 1_2:-2691313 None:intergenic
TCCCTCTCGGGGAACATGAT+AGG 0.410613 1_2:-2691238 None:intergenic
AGAGCCAGTGGAAACAGCTT+TGG 0.410773 1_2:-2690616 None:intergenic
AGGGAAGCCTTTGCTTCCAT+TGG 0.430704 1_2:+2690985 Msa0049400:intron
CTCAATTTCTCATGGCTATG+AGG 0.435775 1_2:+2691276 Msa0049400:three_prime_UTR
CGTGCAAGCGCTGCATGCGC+AGG 0.436615 1_2:-2686659 None:intergenic
GAAGAGGAAGAAGACGAGTT+AGG 0.437007 1_2:-2686501 None:intergenic
GAGACCGCAGTAAGCGATCC+TGG 0.442881 1_2:-2686713 None:intergenic
GTCTCAAACCACTCACGGCT+TGG 0.455362 1_2:-2689087 None:intergenic
TAAAATGATATTACAGAAGC+AGG 0.455370 1_2:-2690519 None:intergenic
ACCACTTAGAACTCCCTCTC+GGG 0.455883 1_2:-2691250 None:intergenic
GGTGGCCTTCAGTTTGGGTC+CGG 0.455885 1_2:+2691164 Msa0049400:CDS
GGTCCGGATTGTCACTTGCT+GGG 0.471690 1_2:+2691180 Msa0049400:CDS
CAGCACGAGGTGAGCTTGGT+GGG 0.475655 1_2:-2690719 None:intergenic
TGAAGTTGCTGCTCCTCTCA+TGG 0.477270 1_2:+2686771 Msa0049400:CDS
TGAGAGGAGCAGCAACTTCA+CGG 0.481919 1_2:-2686768 None:intergenic
TTTGCTTCCATTGGATGCTA+AGG 0.484701 1_2:+2690994 Msa0049400:CDS
TTGCCCAGCAAGTGACAATC+CGG 0.490616 1_2:-2691183 None:intergenic
CTGCAATGCTTCTGACAGGT+TGG 0.496263 1_2:+2691101 Msa0049400:CDS
ACAATTGAAAACACGCCCAT+TGG 0.501051 1_2:-2691411 None:intergenic
GCATCAGCCGTCGTTCCGCC+AGG 0.502290 1_2:+2686695 Msa0049400:CDS
CGATGGAATGACACATGGGT+TGG 0.508752 1_2:+2689572 Msa0049400:CDS
GTGGTTTGCTCAATTTCTCA+TGG 0.509180 1_2:+2691268 Msa0049400:three_prime_UTR
TTACCAGCACGAGGTGAGCT+TGG 0.512418 1_2:-2690723 None:intergenic
ACAGGTTGGTCTACCTCTGT+TGG 0.513172 1_2:+2691115 Msa0049400:CDS
CACTCCAAAGCTGTTTCCAC+TGG 0.514617 1_2:+2690612 Msa0049400:CDS
TCCTATCATGTTCCCCGAGA+GGG 0.515037 1_2:+2691237 Msa0049400:CDS
AAACTATATATATTTATTCA+GGG 0.515670 1_2:-2691449 None:intergenic
GAGTGGTAAGTTGGTTGACG+TGG 0.518500 1_2:+2691141 Msa0049400:CDS
AGAGAAAATCAAGTGGAAGA+AGG 0.522573 1_2:-2691062 None:intergenic
ACAATATCGAAGTTTGGCTC+TGG 0.525610 1_2:+2689503 Msa0049400:CDS
TAAAAGCTGATCATCTCGTT+CGG 0.533573 1_2:-2689279 None:intergenic
CCAGCACGAGGTGAGCTTGG+TGG 0.535233 1_2:-2690720 None:intergenic
TTGTTAGGTCGAAAAGGAAG+AGG 0.536397 1_2:-2686517 None:intergenic
CCACCAAGCTCACCTCGTGC+TGG 0.536510 1_2:+2690720 Msa0049400:CDS
GGCAGAAGATCCAGCACGCA+CGG 0.537351 1_2:-2690685 None:intergenic
TCTTCATCCTTAGCATCCAA+TGG 0.538427 1_2:-2691001 None:intergenic
TCTACCTCTGTTGGAGAGAG+TGG 0.544514 1_2:+2691124 Msa0049400:CDS
ACGAAGCAGCCCACATCGAT+TGG 0.546368 1_2:-2686615 None:intergenic
TCGTGATGGCTTGCATCATG+GGG 0.548269 1_2:+2689200 Msa0049400:CDS
AACACCCGAGAACACAAAAG+TGG 0.551272 1_2:-2689778 None:intergenic
CCCCGAGAGGGAGTTCTAAG+TGG 0.552012 1_2:+2691249 Msa0049400:exon
ATTTCTCATGGCTATGAGGA+AGG 0.552951 1_2:+2691280 Msa0049400:three_prime_UTR
GTTCCACAGTCTTGTCCAGA+TGG 0.553670 1_2:-2689819 None:intergenic
TATTCTGCAATGCTTCTGAC+AGG 0.554920 1_2:+2691097 Msa0049400:CDS
GTATCTCTGCTATAGTGCAC+TGG 0.555945 1_2:+2690548 Msa0049400:CDS
TGTTGGAGAGAGTGGTAAGT+TGG 0.560804 1_2:+2691132 Msa0049400:CDS
ATTCTGGCTACTATGATGGT+TGG 0.561002 1_2:+2689156 Msa0049400:CDS
AACCACTTAGAACTCCCTCT+CGG 0.562795 1_2:-2691251 None:intergenic
GTTATGAATGACAATTCCAA+TGG 0.564254 1_2:+2691395 Msa0049400:three_prime_UTR
TTCATCGATGGAATGACACA+TGG 0.568693 1_2:+2689567 Msa0049400:CDS
GGAGCAACCAAGCGACGACA+AGG 0.573693 1_2:-2686747 None:intergenic
CATCAGTCTCAAACCACTCA+CGG 0.575605 1_2:-2689092 None:intergenic
TTATGAATGACAATTCCAAT+GGG 0.577676 1_2:+2691396 Msa0049400:three_prime_UTR
AGTGGTAAGTTGGTTGACGT+GGG 0.580162 1_2:+2691142 Msa0049400:CDS
TTAGCATCCAATGGAAGCAA+AGG 0.580922 1_2:-2690992 None:intergenic
TCCCAAAGTAAGAGAGCCAG+TGG 0.584338 1_2:-2690628 None:intergenic
AAGCAGCCCACATCGATTGG+TGG 0.585388 1_2:-2686612 None:intergenic
ACTCAGAAGGATCCTCGTGA+TGG 0.591184 1_2:+2689186 Msa0049400:CDS
AACAAACTCCAAGCCGTGAG+TGG 0.592734 1_2:+2689079 Msa0049400:CDS
CCATTGCACTCGTAATCTCT+GGG 0.592953 1_2:-2690579 None:intergenic
AAGCGATCCTGGCGGAACGA+CGG 0.600803 1_2:-2686702 None:intergenic
GAGCAACCAAGCGACGACAA+GGG 0.601750 1_2:-2686746 None:intergenic
AGCACGAGGTGAGCTTGGTG+GGG 0.602144 1_2:-2690718 None:intergenic
GGATGATGAAAGTTATCTGT+TGG 0.606558 1_2:+2689226 Msa0049400:CDS
CCTAATTCCACCAATCGATG+TGG 0.606566 1_2:+2686605 Msa0049400:exon
ACAATCCGGACCCAAACTGA+AGG 0.613766 1_2:-2691169 None:intergenic
GGTTGGCGTCAAAACTCAGA+AGG 0.617467 1_2:+2689173 Msa0049400:CDS
CAGGGAATAGATTCCATGAG+AGG 0.617656 1_2:-2686784 None:intergenic
ACGGCTGATGCTTGAAACGA+CGG 0.620690 1_2:-2686683 None:intergenic
ACGCCATCTGGACAAGACTG+TGG 0.625844 1_2:+2689816 Msa0049400:CDS
CTAATTCCACCAATCGATGT+GGG 0.626114 1_2:+2686606 Msa0049400:exon
GTAAGTTGGTTGACGTGGGG+TGG 0.626195 1_2:+2691146 Msa0049400:CDS
GTGGTAAGTTGGTTGACGTG+GGG 0.627255 1_2:+2691143 Msa0049400:CDS
CCCAGAGATTACGAGTGCAA+TGG 0.637382 1_2:+2690579 Msa0049400:CDS
CCATGATGCAAGCCATCACG+AGG 0.642661 1_2:-2689198 None:intergenic
CTTACCACTCTCTCCAACAG+AGG 0.657529 1_2:-2691128 None:intergenic
TAGCAAGAGAGAAAATCAAG+TGG 0.659036 1_2:-2691069 None:intergenic
TTTAATGATTTACCAGCACG+AGG 0.659959 1_2:-2690732 None:intergenic
AAAACATAAAGATAACCAGA+AGG 0.662610 1_2:-2689251 None:intergenic
CCACTTAGAACTCCCTCTCG+GGG 0.670567 1_2:-2691249 None:intergenic
TGTTTCACTTGTCTGTTACG+TGG 0.674098 1_2:+2689755 Msa0049400:CDS
CTCCTATCATGTTCCCCGAG+AGG 0.674148 1_2:+2691236 Msa0049400:CDS
TCCGCCAGGATCGCTTACTG+CGG 0.674158 1_2:+2686709 Msa0049400:CDS
CGTGATGGCTTGCATCATGG+GGG 0.676109 1_2:+2689201 Msa0049400:CDS
GCTTGGTGGGGAAAGCACTG+CGG 0.746991 1_2:-2690706 None:intergenic
TCATCGATGGAATGACACAT+GGG 0.749727 1_2:+2689568 Msa0049400:CDS
ACCGCAGTAAGCGATCCTGG+CGG 0.774022 1_2:-2686710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTAATTTTTA+TGG + chr1_2:2689673-2689692 Msa0049400:intron 0.0%
!! TATATATAAAAAAGAAAGTT+GGG - chr1_2:2687046-2687065 None:intergenic 10.0%
!! AAAAACAAAAAAACAAAAAT+TGG + chr1_2:2688295-2688314 Msa0049400:intron 10.0%
!! AACAATATTTAATAATTAAC+AGG - chr1_2:2690113-2690132 None:intergenic 10.0%
!! AAACTATATATATTTATTCA+GGG - chr1_2:2691452-2691471 None:intergenic 10.0%
!! TAAACTATATATATTTATTC+AGG - chr1_2:2691453-2691472 None:intergenic 10.0%
!! AAATTATAAAGAGGTAAAAA+AGG - chr1_2:2686842-2686861 None:intergenic 15.0%
!! CTATATATAAAAAAGAAAGT+TGG - chr1_2:2687047-2687066 None:intergenic 15.0%
!!! CAACTTTCTTTTTTATATAT+AGG + chr1_2:2687045-2687064 Msa0049400:intron 15.0%
!! TTAATTCTTAGATAAGATAT+AGG + chr1_2:2687682-2687701 Msa0049400:intron 15.0%
!! TAATTCTTAGATAAGATATA+GGG + chr1_2:2687683-2687702 Msa0049400:intron 15.0%
!! TTAACATATAAATATACAAG+TGG - chr1_2:2688138-2688157 None:intergenic 15.0%
!! CTTGTATATTTATATGTTAA+AGG + chr1_2:2688138-2688157 Msa0049400:intron 15.0%
!!! AAAACAATTTGAATTTGTTA+TGG + chr1_2:2688531-2688550 Msa0049400:intron 15.0%
!!! TAAATTTTATGAAACTGTTT+GGG - chr1_2:2688921-2688940 None:intergenic 15.0%
!!! ATAAATTTTATGAAACTGTT+TGG - chr1_2:2688922-2688941 None:intergenic 15.0%
!!! GTAATTTTTTTTAAAGCTTT+TGG + chr1_2:2689458-2689477 Msa0049400:intron 15.0%
!!! ATTATTTTACTTATGTAACA+TGG + chr1_2:2689634-2689653 Msa0049400:intron 15.0%
!!! CTATTTATAAGAGAAATTTT+GGG + chr1_2:2690214-2690233 Msa0049400:intron 15.0%
!!! TATTTATAAGAGAAATTTTG+GGG + chr1_2:2690215-2690234 Msa0049400:intron 15.0%
!!! TATATATAACTCAATTTTTC+TGG + chr1_2:2690370-2690389 Msa0049400:intron 15.0%
!! TCTACAAAATAAAGAAATAT+TGG - chr1_2:2690760-2690779 None:intergenic 15.0%
!! CAAAATTCGAAATTATAAAG+AGG - chr1_2:2686851-2686870 None:intergenic 20.0%
!!! CATTAATTTTTGATCAAACA+AGG - chr1_2:2686986-2687005 None:intergenic 20.0%
!! TGATCAAAAATTAATGTATC+TGG + chr1_2:2686990-2687009 Msa0049400:intron 20.0%
!!! TTTTATATATAGGAACAGAA+AGG + chr1_2:2687055-2687074 Msa0049400:intron 20.0%
!! TTTCTCAAAAAACAAAGTTA+CGG + chr1_2:2687785-2687804 Msa0049400:intron 20.0%
!!! ATTTAAAATAACATAGCATG+AGG + chr1_2:2687831-2687850 Msa0049400:intron 20.0%
!!! TCATTTTGTCAAGAAAAAAA+CGG + chr1_2:2688221-2688240 Msa0049400:intron 20.0%
!!! GTTTTTTTGTTTTTAAACCT+TGG - chr1_2:2688289-2688308 None:intergenic 20.0%
!! AAACAAAAATTGGTACATTA+TGG + chr1_2:2688305-2688324 Msa0049400:intron 20.0%
!! AACAAAAATTGGTACATTAT+GGG + chr1_2:2688306-2688325 Msa0049400:intron 20.0%
!!! TTTATATGTTGTTTTTGTCT+AGG + chr1_2:2688485-2688504 Msa0049400:intron 20.0%
!! TATGGAAATAGATTATTACA+AGG + chr1_2:2688549-2688568 Msa0049400:intron 20.0%
!! AACGATTTGAAAAAAAAGAA+AGG - chr1_2:2688608-2688627 None:intergenic 20.0%
!!! AAATTTTATGAAACTGTTTG+GGG - chr1_2:2688920-2688939 None:intergenic 20.0%
!!! TTGATGATTTTACTAACAAA+AGG - chr1_2:2689386-2689405 None:intergenic 20.0%
!! CATTGAAATGAAAAAGATAT+TGG - chr1_2:2689844-2689863 None:intergenic 20.0%
!! CCAAAATTTCTCTTATAAAT+AGG - chr1_2:2690216-2690235 None:intergenic 20.0%
!!! CCTATTTATAAGAGAAATTT+TGG + chr1_2:2690213-2690232 Msa0049400:intron 20.0%
!! TTAACAAAAATTGATGTATC+TGG + chr1_2:2690238-2690257 Msa0049400:intron 20.0%
!! ATTCCTAACTAAACAAAATA+AGG - chr1_2:2690417-2690436 None:intergenic 20.0%
!!! TATTTTGTTTAGTTAGGAAT+TGG + chr1_2:2690417-2690436 Msa0049400:intron 20.0%
!! TAGATATTCAATTCAACATT+GGG - chr1_2:2690810-2690829 None:intergenic 20.0%
!! ATAGATATTCAATTCAACAT+TGG - chr1_2:2690811-2690830 None:intergenic 20.0%
!! CAAACAAATATATAGTAGTT+AGG - chr1_2:2691316-2691335 None:intergenic 20.0%
!!! TGTTTCTTGACTTTTTCAAT+CGG - chr1_2:2686437-2686456 None:intergenic 25.0%
! AAGAGGTAAAAAAGGAATTA+GGG - chr1_2:2686834-2686853 None:intergenic 25.0%
! AAAGAGGTAAAAAAGGAATT+AGG - chr1_2:2686835-2686854 None:intergenic 25.0%
! TGTGAAATTTCTGTTTCATA+TGG + chr1_2:2687124-2687143 Msa0049400:intron 25.0%
!!! ATAACTTGTTTATCCAAACA+AGG - chr1_2:2687319-2687338 None:intergenic 25.0%
! CTACTTATAGTTCATACAAA+AGG - chr1_2:2687427-2687446 None:intergenic 25.0%
! TTTCAGAAAACTTATGTCAT+CGG + chr1_2:2687473-2687492 Msa0049400:intron 25.0%
! GGATAATCTCTTTAACTATA+TGG + chr1_2:2687494-2687513 Msa0049400:intron 25.0%
! TTACAATAAAAATCAGCTCA+GGG - chr1_2:2687617-2687636 None:intergenic 25.0%
! TTCTCAAAAAACAAAGTTAC+GGG + chr1_2:2687786-2687805 Msa0049400:intron 25.0%
!!! AGATATTCATTTGTCACTTT+TGG + chr1_2:2687929-2687948 Msa0049400:intron 25.0%
! TATTGCAATCTATCATACAA+GGG - chr1_2:2688015-2688034 None:intergenic 25.0%
!! TTCACAAAGTACTAATACTA+GGG - chr1_2:2688196-2688215 None:intergenic 25.0%
!! TTTCACAAAGTACTAATACT+AGG - chr1_2:2688197-2688216 None:intergenic 25.0%
!!! GTTTTTTTCTTGACAAAATG+AGG - chr1_2:2688222-2688241 None:intergenic 25.0%
!!! TTTGTTTTTAAACCTTGGTA+CGG - chr1_2:2688284-2688303 None:intergenic 25.0%
! AATAGATTATTACAAGGCTT+AGG + chr1_2:2688555-2688574 Msa0049400:intron 25.0%
! TTACATAGTATGAAACTGTT+TGG + chr1_2:2688712-2688731 Msa0049400:intron 25.0%
! TACATAGTATGAAACTGTTT+GGG + chr1_2:2688713-2688732 Msa0049400:intron 25.0%
!! AATTTTATGAAACTGTTTGG+GGG - chr1_2:2688919-2688938 None:intergenic 25.0%
! TGTATTCCATATGAAACATA+AGG - chr1_2:2688981-2689000 None:intergenic 25.0%
! ACGTATTTGTAAAATGTTGT+AGG + chr1_2:2689042-2689061 Msa0049400:intron 25.0%
! CGTATTTGTAAAATGTTGTA+GGG + chr1_2:2689043-2689062 Msa0049400:intron 25.0%
!!! CTTTCTATTTTTCACTATTC+TGG + chr1_2:2689140-2689159 Msa0049400:CDS 25.0%
! AAAACATAAAGATAACCAGA+AGG - chr1_2:2689254-2689273 None:intergenic 25.0%
!!! TGTTTTTAAATGCTTTGTCT+TGG + chr1_2:2690129-2690148 Msa0049400:intron 25.0%
! ATTTCTCTTATAAATAGGAC+CGG - chr1_2:2690211-2690230 None:intergenic 25.0%
! GTAATATTATATACTACCTC+CGG - chr1_2:2690319-2690338 None:intergenic 25.0%
!!! AGTTAGGAATTGGTTTTATT+TGG + chr1_2:2690427-2690446 Msa0049400:intron 25.0%
! CATTTACCTGTAAATAAGAA+TGG - chr1_2:2690488-2690507 None:intergenic 25.0%
!! CATTCTTATTTACAGGTAAA+TGG + chr1_2:2690486-2690505 Msa0049400:intron 25.0%
! TAAAATGATATTACAGAAGC+AGG - chr1_2:2690522-2690541 None:intergenic 25.0%
!! ATATCTATGAATGCTTTTGT+TGG + chr1_2:2690823-2690842 Msa0049400:intron 25.0%
!!! TAGGTTTTAGTGCTATATTA+TGG + chr1_2:2690865-2690884 Msa0049400:intron 25.0%
!!! AGGTTTTAGTGCTATATTAT+GGG + chr1_2:2690866-2690885 Msa0049400:intron 25.0%
! TTATGAATGACAATTCCAAT+GGG + chr1_2:2691396-2691415 Msa0049400:three_prime_UTR 25.0%
AATATTGTTGTGTCAGACTT+TGG - chr1_2:2686468-2686487 None:intergenic 30.0%
!!! TTTGAGATTGTTTTTGGGTT+GGG - chr1_2:2686583-2686602 None:intergenic 30.0%
!!! TTTTGAGATTGTTTTTGGGT+TGG - chr1_2:2686584-2686603 None:intergenic 30.0%
!!! AGGGTTTTGAGATTGTTTTT+GGG - chr1_2:2686588-2686607 None:intergenic 30.0%
!!! TAGGGTTTTGAGATTGTTTT+TGG - chr1_2:2686589-2686608 None:intergenic 30.0%
AGAGGGAAAAGTTAATTACA+GGG - chr1_2:2686805-2686824 None:intergenic 30.0%
AAGAGGGAAAAGTTAATTAC+AGG - chr1_2:2686806-2686825 None:intergenic 30.0%
!! TGTGTATGAGCTATTTCTAT+AGG + chr1_2:2687253-2687272 Msa0049400:intron 30.0%
!! TCTGTATGAGCTATTTCTAT+AGG + chr1_2:2687378-2687397 Msa0049400:intron 30.0%
GTTACAATAAAAATCAGCTC+AGG - chr1_2:2687618-2687637 None:intergenic 30.0%
!! TTTTTGAGAAATGTCGTATC+TGG - chr1_2:2687776-2687795 None:intergenic 30.0%
AAAAAACAAAGTTACGGGTA+CGG + chr1_2:2687791-2687810 Msa0049400:intron 30.0%
AGGAAATTATATCTCTCAAC+CGG + chr1_2:2687851-2687870 Msa0049400:intron 30.0%
!! CTTTTTCATTAGCAATTCTG+TGG + chr1_2:2687888-2687907 Msa0049400:intron 30.0%
! AGAATAAGATGTCATTTGCT+CGG - chr1_2:2687982-2688001 None:intergenic 30.0%
CTATTGCAATCTATCATACA+AGG - chr1_2:2688016-2688035 None:intergenic 30.0%
! ATACAATGATTTTCCTCTCA+AGG - chr1_2:2688103-2688122 None:intergenic 30.0%
! TCACAAAGTACTAATACTAG+GGG - chr1_2:2688195-2688214 None:intergenic 30.0%
TGAAATTGCTGTGTTTCATA+TGG + chr1_2:2688634-2688653 Msa0049400:intron 30.0%
TGCAGTAAAAAATCAGATCA+GGG - chr1_2:2688690-2688709 None:intergenic 30.0%
TTGCAGTAAAAAATCAGATC+AGG - chr1_2:2688691-2688710 None:intergenic 30.0%
TTCACCTTCAAGTCATAATA+AGG - chr1_2:2689018-2689037 None:intergenic 30.0%
CAATAAATGAAACTTACAGC+AGG - chr1_2:2689909-2689928 None:intergenic 30.0%
AGATCTACACATGAAAAACA+AGG - chr1_2:2689966-2689985 None:intergenic 30.0%
TGCGCATAAGTTAAAACAAA+TGG - chr1_2:2690054-2690073 None:intergenic 30.0%
TCAACCAAAGTTAATGTATG+TGG - chr1_2:2690277-2690296 None:intergenic 30.0%
!!! GGACCTTATTTTGTTTAGTT+AGG + chr1_2:2690411-2690430 Msa0049400:intron 30.0%
ATAGACTATTCATGATCTGT+TGG + chr1_2:2690460-2690479 Msa0049400:intron 30.0%
! TTGGATCCATTCTTATTTAC+AGG + chr1_2:2690479-2690498 Msa0049400:intron 30.0%
AAGGCATATGAATATGTAAC+TGG - chr1_2:2691046-2691065 None:intergenic 30.0%
GTTATGAATGACAATTCCAA+TGG + chr1_2:2691395-2691414 Msa0049400:three_prime_UTR 30.0%
!!! TCTTGACTTTTTCAATCGGT+TGG - chr1_2:2686433-2686452 None:intergenic 35.0%
GAAGACGAGTTAGGAAATAA+AGG - chr1_2:2686495-2686514 None:intergenic 35.0%
!!! TTGGTTTTGTTAGGTCGAAA+AGG - chr1_2:2686526-2686545 None:intergenic 35.0%
!! ATTTTGGAAGATGGAATTGG+GGG - chr1_2:2686551-2686570 None:intergenic 35.0%
!! GATTTTGGAAGATGGAATTG+GGG - chr1_2:2686552-2686571 None:intergenic 35.0%
!! GGATTTTGGAAGATGGAATT+GGG - chr1_2:2686553-2686572 None:intergenic 35.0%
!! AAATTGGGGATTTTGGAAGA+TGG - chr1_2:2686560-2686579 None:intergenic 35.0%
!!! TGTTTTTGGGTTGGGAAATT+GGG - chr1_2:2686575-2686594 None:intergenic 35.0%
!!! TTGTTTTTGGGTTGGGAAAT+TGG - chr1_2:2686576-2686595 None:intergenic 35.0%
AGGAATTAGGGTTTGAAAGA+GGG - chr1_2:2686822-2686841 None:intergenic 35.0%
AAGGAATTAGGGTTTGAAAG+AGG - chr1_2:2686823-2686842 None:intergenic 35.0%
! GTATGTCAACTTGCTTAGAA+TGG + chr1_2:2687163-2687182 Msa0049400:intron 35.0%
! TAGAATGGCATGATTTTGTG+TGG + chr1_2:2687178-2687197 Msa0049400:intron 35.0%
CGAAATTGCTACATTTCACA+TGG + chr1_2:2687561-2687580 Msa0049400:intron 35.0%
AATAAAAATCAGCTCAGGGA+GGG - chr1_2:2687613-2687632 None:intergenic 35.0%
AAATTATATCTCTCAACCGG+CGG + chr1_2:2687854-2687873 Msa0049400:intron 35.0%
!! AAAAGCACTATAATTTCCGC+CGG - chr1_2:2687873-2687892 None:intergenic 35.0%
TTGCTCGGAGAAAAGAAAAA+GGG - chr1_2:2687967-2687986 None:intergenic 35.0%
TTTGCTCGGAGAAAAGAAAA+AGG - chr1_2:2687968-2687987 None:intergenic 35.0%
GAAAAGGAAATAGTGCAACA+TGG - chr1_2:2688047-2688066 None:intergenic 35.0%
ATGTGACAATTGTGCAAGAA+AGG - chr1_2:2688077-2688096 None:intergenic 35.0%
TTTAAACCTTGGTACGGTTA+CGG - chr1_2:2688278-2688297 None:intergenic 35.0%
AGTTATTTGAGCTTATTGGC+CGG + chr1_2:2688426-2688445 Msa0049400:intron 35.0%
ATATGGAGATTACACGAAGA+TGG + chr1_2:2688651-2688670 Msa0049400:intron 35.0%
GTAAAAAATCAGATCAGGGA+AGG - chr1_2:2688686-2688705 None:intergenic 35.0%
AAAACAACTTACAGCTTGTG+CGG - chr1_2:2688840-2688859 None:intergenic 35.0%
CTCAAATAAGCAATCCAAAC+AGG + chr1_2:2688955-2688974 Msa0049400:intron 35.0%
TATGAAACATAAGGCCTGTT+TGG - chr1_2:2688972-2688991 None:intergenic 35.0%
! AACAGGCCTTATGTTTCATA+TGG + chr1_2:2688972-2688991 Msa0049400:intron 35.0%
!! GTAGCCTTATTATGACTTGA+AGG + chr1_2:2689011-2689030 Msa0049400:intron 35.0%
GGATGATGAAAGTTATCTGT+TGG + chr1_2:2689226-2689245 Msa0049400:CDS 35.0%
TAAAAGCTGATCATCTCGTT+CGG - chr1_2:2689282-2689301 None:intergenic 35.0%
! AACGAGATGATCAGCTTTTA+TGG + chr1_2:2689282-2689301 Msa0049400:CDS 35.0%
GCAGAAACAATATCGAAGTT+TGG + chr1_2:2689497-2689516 Msa0049400:intron 35.0%
! TGTTGGATTTTGTTCATCGA+TGG + chr1_2:2689555-2689574 Msa0049400:CDS 35.0%
! AATTGCTTCGTTGTTGTTAC+AGG + chr1_2:2689715-2689734 Msa0049400:intron 35.0%
AAAAACAAATGCGAGCATCA+GGG - chr1_2:2689868-2689887 None:intergenic 35.0%
ACATTACAAAATACTCCCTC+CGG + chr1_2:2690189-2690208 Msa0049400:intron 35.0%
CAGTCCACATACATTAACTT+TGG + chr1_2:2690270-2690289 Msa0049400:intron 35.0%
CCAAACTTTCTCTTATAGAC+CGG + chr1_2:2690297-2690316 Msa0049400:intron 35.0%
TTTAATGATTTACCAGCACG+AGG - chr1_2:2690735-2690754 None:intergenic 35.0%
GTGTCTAGATTTGTGAACTT+AGG - chr1_2:2690788-2690807 None:intergenic 35.0%
AGAGAAAATCAAGTGGAAGA+AGG - chr1_2:2691065-2691084 None:intergenic 35.0%
TAGCAAGAGAGAAAATCAAG+TGG - chr1_2:2691072-2691091 None:intergenic 35.0%
! CAACTGCTTTGCTATACTTA+TGG + chr1_2:2691203-2691222 Msa0049400:CDS 35.0%
GCAGTTTATGTTTGCATCTT+CGG + chr1_2:2691514-2691533 Msa0049400:three_prime_UTR 35.0%
TTGTTAGGTCGAAAAGGAAG+AGG - chr1_2:2686520-2686539 None:intergenic 40.0%
!!! TTGGGGGTTTTGGTTTTGTT+AGG - chr1_2:2686535-2686554 None:intergenic 40.0%
!! GGGATTTTGGAAGATGGAAT+TGG - chr1_2:2686554-2686573 None:intergenic 40.0%
!!! GTTTTTGGGTTGGGAAATTG+GGG - chr1_2:2686574-2686593 None:intergenic 40.0%
! CACATCGATTGGTGGAATTA+GGG - chr1_2:2686607-2686626 None:intergenic 40.0%
CTAATTCCACCAATCGATGT+GGG + chr1_2:2686606-2686625 Msa0049400:exon 40.0%
GAACTTCAACTCGCTTAGAA+TGG + chr1_2:2687288-2687307 Msa0049400:intron 40.0%
TAGAATGGCATGACCTTGTT+TGG + chr1_2:2687303-2687322 Msa0049400:intron 40.0%
CAATAAAAATCAGCTCAGGG+AGG - chr1_2:2687614-2687633 None:intergenic 40.0%
TAAGATATAGGGCCTCTTTG+CGG + chr1_2:2687694-2687713 Msa0049400:intron 40.0%
TGCTCGGAGAAAAGAAAAAG+GGG - chr1_2:2687966-2687985 None:intergenic 40.0%
! CAAGAAAGGCATGAAGGAAA+AGG - chr1_2:2688063-2688082 None:intergenic 40.0%
! ATTGTGCAAGAAAGGCATGA+AGG - chr1_2:2688069-2688088 None:intergenic 40.0%
ATTGTCACATAAGCCTTGAG+AGG + chr1_2:2688087-2688106 Msa0049400:intron 40.0%
AGTACTAATACTAGGGGAGT+AGG - chr1_2:2688189-2688208 None:intergenic 40.0%
GGCCAGTTATTTGAGCTTAT+TGG + chr1_2:2688422-2688441 Msa0049400:intron 40.0%
GGCCAATAAGCTCAAATAAC+TGG - chr1_2:2688427-2688446 None:intergenic 40.0%
! CACTATTCTGGCTACTATGA+TGG + chr1_2:2689152-2689171 Msa0049400:CDS 40.0%
! ATTCTGGCTACTATGATGGT+TGG + chr1_2:2689156-2689175 Msa0049400:CDS 40.0%
!! AGTTATCTGTTGGTTCCTTC+TGG + chr1_2:2689236-2689255 Msa0049400:CDS 40.0%
! GATGATCAGCTTTTATGGTG+AGG + chr1_2:2689287-2689306 Msa0049400:intron 40.0%
CAAAAGGAAGCTAACATGCA+TGG - chr1_2:2689370-2689389 None:intergenic 40.0%
! ACAATATCGAAGTTTGGCTC+TGG + chr1_2:2689503-2689522 Msa0049400:CDS 40.0%
!! TGTTCAAGTTGTGCTCTTGT+TGG + chr1_2:2689538-2689557 Msa0049400:CDS 40.0%
TTCATCGATGGAATGACACA+TGG + chr1_2:2689567-2689586 Msa0049400:CDS 40.0%
TCATCGATGGAATGACACAT+GGG + chr1_2:2689568-2689587 Msa0049400:CDS 40.0%
TTGGATATGATGAGCAGTTC+TGG + chr1_2:2689591-2689610 Msa0049400:CDS 40.0%
TGTTTCACTTGTCTGTTACG+TGG + chr1_2:2689755-2689774 Msa0049400:CDS 40.0%
TTTCATTTCTTCACGCCATC+TGG + chr1_2:2689804-2689823 Msa0049400:CDS 40.0%
CAAAAACAAATGCGAGCATC+AGG - chr1_2:2689869-2689888 None:intergenic 40.0%
CTTCATGTGATAGACAACAG+TGG - chr1_2:2689991-2690010 None:intergenic 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr1_2:2690207-2690226 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr1_2:2690208-2690227 None:intergenic 40.0%
CCGGTCTATAAGAGAAAGTT+TGG - chr1_2:2690300-2690319 None:intergenic 40.0%
AACTTTCTCTTATAGACCGG+AGG + chr1_2:2690300-2690319 Msa0049400:intron 40.0%
CCTAAAATCACTCAGCTTCA+TGG - chr1_2:2690849-2690868 None:intergenic 40.0%
! CCATGAAGCTGAGTGATTTT+AGG + chr1_2:2690846-2690865 Msa0049400:intron 40.0%
! TACTGACAATCTGCCATTTC+TGG + chr1_2:2690953-2690972 Msa0049400:intron 40.0%
!! CCATTTCTGGTTATTGTGCA+GGG + chr1_2:2690966-2690985 Msa0049400:intron 40.0%
TTAGCATCCAATGGAAGCAA+AGG - chr1_2:2690995-2691014 None:intergenic 40.0%
TTTGCTTCCATTGGATGCTA+AGG + chr1_2:2690994-2691013 Msa0049400:CDS 40.0%
TCTTCATCCTTAGCATCCAA+TGG - chr1_2:2691004-2691023 None:intergenic 40.0%
TATTCTGCAATGCTTCTGAC+AGG + chr1_2:2691097-2691116 Msa0049400:CDS 40.0%
!! GTGGTTTGCTCAATTTCTCA+TGG + chr1_2:2691268-2691287 Msa0049400:three_prime_UTR 40.0%
CTCAATTTCTCATGGCTATG+AGG + chr1_2:2691276-2691295 Msa0049400:three_prime_UTR 40.0%
ATTTCTCATGGCTATGAGGA+AGG + chr1_2:2691280-2691299 Msa0049400:three_prime_UTR 40.0%
ACAATTGAAAACACGCCCAT+TGG - chr1_2:2691414-2691433 None:intergenic 40.0%
GAAGAGGAAGAAGACGAGTT+AGG - chr1_2:2686504-2686523 None:intergenic 45.0%
! GAAGATGGAATTGGGGGTTT+TGG - chr1_2:2686545-2686564 None:intergenic 45.0%
! GGTTGGGAAATTGGGGATTT+TGG - chr1_2:2686567-2686586 None:intergenic 45.0%
! CCACATCGATTGGTGGAATT+AGG - chr1_2:2686608-2686627 None:intergenic 45.0%
CCTAATTCCACCAATCGATG+TGG + chr1_2:2686605-2686624 Msa0049400:exon 45.0%
CAGGGAATAGATTCCATGAG+AGG - chr1_2:2686787-2686806 None:intergenic 45.0%
AACAAAGTTACGGGTACGGT+AGG + chr1_2:2687795-2687814 Msa0049400:intron 45.0%
TTTGCAAAACGTACCCGTAC+CGG - chr1_2:2688378-2688397 None:intergenic 45.0%
AGTCTCACAACTGCTTATGC+CGG - chr1_2:2688448-2688467 None:intergenic 45.0%
CATCAGTCTCAAACCACTCA+CGG - chr1_2:2689095-2689114 None:intergenic 45.0%
! GCAGTTCTTCGTGTTAGCTT+TGG + chr1_2:2689114-2689133 Msa0049400:CDS 45.0%
!! GAGCAGTTCTGGTCAGTTTT+AGG + chr1_2:2689602-2689621 Msa0049400:intron 45.0%
AACACCCGAGAACACAAAAG+TGG - chr1_2:2689781-2689800 None:intergenic 45.0%
AGCAGGATGCAAAGCTACTA+TGG - chr1_2:2689892-2689911 None:intergenic 45.0%
TGGCGTGAAGTAACAATTGC+TGG + chr1_2:2690390-2690409 Msa0049400:intron 45.0%
GTATCTCTGCTATAGTGCAC+TGG + chr1_2:2690548-2690567 Msa0049400:CDS 45.0%
CCATTGCACTCGTAATCTCT+GGG - chr1_2:2690582-2690601 None:intergenic 45.0%
ACCATTGCACTCGTAATCTC+TGG - chr1_2:2690583-2690602 None:intergenic 45.0%
!! TTCCACTGGCTCTCTTACTT+TGG + chr1_2:2690626-2690645 Msa0049400:CDS 45.0%
!! TCCACTGGCTCTCTTACTTT+GGG + chr1_2:2690627-2690646 Msa0049400:CDS 45.0%
!! GCCATTTCTGGTTATTGTGC+AGG + chr1_2:2690965-2690984 Msa0049400:intron 45.0%
CCCTGCACAATAACCAGAAA+TGG - chr1_2:2690969-2690988 None:intergenic 45.0%
TGTTGGAGAGAGTGGTAAGT+TGG + chr1_2:2691132-2691151 Msa0049400:CDS 45.0%
!! AGTGGTAAGTTGGTTGACGT+GGG + chr1_2:2691142-2691161 Msa0049400:CDS 45.0%
AACCACTTAGAACTCCCTCT+CGG - chr1_2:2691254-2691273 None:intergenic 45.0%
!! TTAATAATAAATTGTATATA+TGG - chr1_2:2686937-2686956 None:intergenic 5.0%
!! AAATATAAAATATCAAATAA+AGG - chr1_2:2689663-2689682 None:intergenic 5.0%
! TCGGTTGGTACGCGTTGTTT+CGG - chr1_2:2686418-2686437 None:intergenic 50.0%
ACGGCTGATGCTTGAAACGA+CGG - chr1_2:2686686-2686705 None:intergenic 50.0%
! CTTTTTCCCTTGTCGTCGCT+TGG + chr1_2:2686740-2686759 Msa0049400:CDS 50.0%
TGAGAGGAGCAGCAACTTCA+CGG - chr1_2:2686771-2686790 None:intergenic 50.0%
TGAAGTTGCTGCTCCTCTCA+TGG + chr1_2:2686771-2686790 Msa0049400:CDS 50.0%
TTGCAAAACGTACCCGTACC+GGG - chr1_2:2688377-2688396 None:intergenic 50.0%
! TTGAAGTACCCGTGCTTCAG+AGG + chr1_2:2688398-2688417 Msa0049400:intron 50.0%
AACAAACTCCAAGCCGTGAG+TGG + chr1_2:2689079-2689098 Msa0049400:CDS 50.0%
GGTTGGCGTCAAAACTCAGA+AGG + chr1_2:2689173-2689192 Msa0049400:CDS 50.0%
ACTCAGAAGGATCCTCGTGA+TGG + chr1_2:2689186-2689205 Msa0049400:CDS 50.0%
! CTCGTGATGGCTTGCATCAT+GGG + chr1_2:2689199-2689218 Msa0049400:CDS 50.0%
! TCGTGATGGCTTGCATCATG+GGG + chr1_2:2689200-2689219 Msa0049400:CDS 50.0%
CGATGGAATGACACATGGGT+TGG + chr1_2:2689572-2689591 Msa0049400:CDS 50.0%
!!! CGTGGCCACTTTTGTGTTCT+CGG + chr1_2:2689773-2689792 Msa0049400:CDS 50.0%
!!! GTGGCCACTTTTGTGTTCTC+GGG + chr1_2:2689774-2689793 Msa0049400:CDS 50.0%
! GTTCCACAGTCTTGTCCAGA+TGG - chr1_2:2689822-2689841 None:intergenic 50.0%
CCCAGAGATTACGAGTGCAA+TGG + chr1_2:2690579-2690598 Msa0049400:CDS 50.0%
! CACTCCAAAGCTGTTTCCAC+TGG + chr1_2:2690612-2690631 Msa0049400:CDS 50.0%
AGAGCCAGTGGAAACAGCTT+TGG - chr1_2:2690619-2690638 None:intergenic 50.0%
TCCCAAAGTAAGAGAGCCAG+TGG - chr1_2:2690631-2690650 None:intergenic 50.0%
AGGGAAGCCTTTGCTTCCAT+TGG + chr1_2:2690985-2691004 Msa0049400:intron 50.0%
CTGCAATGCTTCTGACAGGT+TGG + chr1_2:2691101-2691120 Msa0049400:CDS 50.0%
!! ACAGGTTGGTCTACCTCTGT+TGG + chr1_2:2691115-2691134 Msa0049400:CDS 50.0%
TCTACCTCTGTTGGAGAGAG+TGG + chr1_2:2691124-2691143 Msa0049400:CDS 50.0%
CTTACCACTCTCTCCAACAG+AGG - chr1_2:2691131-2691150 None:intergenic 50.0%
!! GAGTGGTAAGTTGGTTGACG+TGG + chr1_2:2691141-2691160 Msa0049400:CDS 50.0%
!! GTGGTAAGTTGGTTGACGTG+GGG + chr1_2:2691143-2691162 Msa0049400:CDS 50.0%
ACAATCCGGACCCAAACTGA+AGG - chr1_2:2691172-2691191 None:intergenic 50.0%
TTGCCCAGCAAGTGACAATC+CGG - chr1_2:2691186-2691205 None:intergenic 50.0%
TCCTATCATGTTCCCCGAGA+GGG + chr1_2:2691237-2691256 Msa0049400:CDS 50.0%
ACCACTTAGAACTCCCTCTC+GGG - chr1_2:2691253-2691272 None:intergenic 50.0%
! CGGTTGGTACGCGTTGTTTC+GGG - chr1_2:2686417-2686436 None:intergenic 55.0%
! AAGCAGCCCACATCGATTGG+TGG - chr1_2:2686615-2686634 None:intergenic 55.0%
ACGAAGCAGCCCACATCGAT+TGG - chr1_2:2686618-2686637 None:intergenic 55.0%
GAGCAACCAAGCGACGACAA+GGG - chr1_2:2686749-2686768 None:intergenic 55.0%
ACCTTGGTACGGTTACGGTG+CGG - chr1_2:2688273-2688292 None:intergenic 55.0%
CATACGAGTACCAGTACCCG+CGG + chr1_2:2688347-2688366 Msa0049400:intron 55.0%
AAGTACCCGTGCTTCAGAGG+CGG + chr1_2:2688401-2688420 Msa0049400:intron 55.0%
GTCTCAAACCACTCACGGCT+TGG - chr1_2:2689090-2689109 None:intergenic 55.0%
CCATGATGCAAGCCATCACG+AGG - chr1_2:2689201-2689220 None:intergenic 55.0%
! CCTCGTGATGGCTTGCATCA+TGG + chr1_2:2689198-2689217 Msa0049400:CDS 55.0%
! CGTGATGGCTTGCATCATGG+GGG + chr1_2:2689201-2689220 Msa0049400:CDS 55.0%
ACGCCATCTGGACAAGACTG+TGG + chr1_2:2689816-2689835 Msa0049400:CDS 55.0%
TTACCAGCACGAGGTGAGCT+TGG - chr1_2:2690726-2690745 None:intergenic 55.0%
!! GTAAGTTGGTTGACGTGGGG+TGG + chr1_2:2691146-2691165 Msa0049400:CDS 55.0%
! GGTCCGGATTGTCACTTGCT+GGG + chr1_2:2691180-2691199 Msa0049400:CDS 55.0%
CTCCTATCATGTTCCCCGAG+AGG + chr1_2:2691236-2691255 Msa0049400:CDS 55.0%
TCCCTCTCGGGGAACATGAT+AGG - chr1_2:2691241-2691260 None:intergenic 55.0%
CCACTTAGAACTCCCTCTCG+GGG - chr1_2:2691252-2691271 None:intergenic 55.0%
AAGCGATCCTGGCGGAACGA+CGG - chr1_2:2686705-2686724 None:intergenic 60.0%
TCCGCCAGGATCGCTTACTG+CGG + chr1_2:2686709-2686728 Msa0049400:CDS 60.0%
ACCGCAGTAAGCGATCCTGG+CGG - chr1_2:2686713-2686732 None:intergenic 60.0%
GAGACCGCAGTAAGCGATCC+TGG - chr1_2:2686716-2686735 None:intergenic 60.0%
GGAGCAACCAAGCGACGACA+AGG - chr1_2:2686750-2686769 None:intergenic 60.0%
CAACACAGCTGGCCGCAAAG+AGG - chr1_2:2687709-2687728 None:intergenic 60.0%
CCAGCTGTGTTGCACAGGTG+CGG + chr1_2:2687717-2687736 Msa0049400:intron 60.0%
CAGCTGTGTTGCACAGGTGC+GGG + chr1_2:2687718-2687737 Msa0049400:intron 60.0%
GTGTTGCACAGGTGCGGGTA+CGG + chr1_2:2687723-2687742 Msa0049400:intron 60.0%
ACGGTACCCGGTACAGGTAC+AGG + chr1_2:2687742-2687761 Msa0049400:intron 60.0%
ACCCGGTACAGGTACAGGTG+CGG + chr1_2:2687747-2687766 Msa0049400:intron 60.0%
ACCCGCACCTGTACCTGTAC+CGG - chr1_2:2687752-2687771 None:intergenic 60.0%
TTGGTACGGTTACGGTGCGG+CGG - chr1_2:2688270-2688289 None:intergenic 60.0%
!! CGCGGGTACTGGTACTCGTA+TGG - chr1_2:2688349-2688368 None:intergenic 60.0%
!! AACTGGCCGCCTCTGAAGCA+CGG - chr1_2:2688410-2688429 None:intergenic 60.0%
! ATGGCTTGCATCATGGGGGC+TGG + chr1_2:2689205-2689224 Msa0049400:CDS 60.0%
GTGTATTCTGCCGTGCGTGC+TGG + chr1_2:2690675-2690694 Msa0049400:CDS 60.0%
GGCAGAAGATCCAGCACGCA+CGG - chr1_2:2690688-2690707 None:intergenic 60.0%
!! GCTTGGTGGGGAAAGCACTG+CGG - chr1_2:2690709-2690728 None:intergenic 60.0%
! AGCACGAGGTGAGCTTGGTG+GGG - chr1_2:2690721-2690740 None:intergenic 60.0%
CAGCACGAGGTGAGCTTGGT+GGG - chr1_2:2690722-2690741 None:intergenic 60.0%
ACGTGGGGTGGCCTTCAGTT+TGG + chr1_2:2691158-2691177 Msa0049400:CDS 60.0%
CGTGGGGTGGCCTTCAGTTT+GGG + chr1_2:2691159-2691178 Msa0049400:CDS 60.0%
GGTGGCCTTCAGTTTGGGTC+CGG + chr1_2:2691164-2691183 Msa0049400:CDS 60.0%
! GGGTCCGGATTGTCACTTGC+TGG + chr1_2:2691179-2691198 Msa0049400:CDS 60.0%
!! CCCCGAGAGGGAGTTCTAAG+TGG + chr1_2:2691249-2691268 Msa0049400:exon 60.0%
TGCGGCCAGCTGTGTTGCAC+AGG + chr1_2:2687712-2687731 Msa0049400:intron 65.0%
CCGCACCTGTGCAACACAGC+TGG - chr1_2:2687720-2687739 None:intergenic 65.0%
ACAGGTGCGGGTACGGTACC+CGG + chr1_2:2687730-2687749 Msa0049400:intron 65.0%
CCCGCACCTGTACCTGTACC+GGG - chr1_2:2687751-2687770 None:intergenic 65.0%
CCCGGTACAGGTACAGGTGC+GGG + chr1_2:2687748-2687767 Msa0049400:intron 65.0%
GTGCGGCGGTGGTACTCTCA+GGG - chr1_2:2688256-2688275 None:intergenic 65.0%
GCCGCACCGTAACCGTACCA+AGG + chr1_2:2688269-2688288 Msa0049400:intron 65.0%
! ACCAGTACCCGCGGAGTACC+CGG + chr1_2:2688356-2688375 Msa0049400:intron 65.0%
! TACCCGCGGAGTACCCGGTA+CGG + chr1_2:2688361-2688380 Msa0049400:intron 65.0%
TACCCGTACCGGGTACTCCG+CGG - chr1_2:2688367-2688386 None:intergenic 65.0%
!! ACTGGCCGCCTCTGAAGCAC+GGG - chr1_2:2688409-2688428 None:intergenic 65.0%
CCAGCACGAGGTGAGCTTGG+TGG - chr1_2:2690723-2690742 None:intergenic 65.0%
CCACCAAGCTCACCTCGTGC+TGG + chr1_2:2690720-2690739 Msa0049400:CDS 65.0%
! CGTGCAAGCGCTGCATGCGC+AGG - chr1_2:2686662-2686681 None:intergenic 70.0%
GCATCAGCCGTCGTTCCGCC+AGG + chr1_2:2686695-2686714 Msa0049400:CDS 70.0%
GCGGGTACGGTACCCGGTAC+AGG + chr1_2:2687736-2687755 Msa0049400:intron 70.0%
GGTGCGGCGGTGGTACTCTC+AGG - chr1_2:2688257-2688276 None:intergenic 70.0%
GTACGGTTACGGTGCGGCGG+TGG - chr1_2:2688267-2688286 None:intergenic 70.0%
ACCGGGTACTCCGCGGGTAC+TGG - chr1_2:2688360-2688379 None:intergenic 70.0%
! ACCCGCGGAGTACCCGGTAC+GGG + chr1_2:2688362-2688381 Msa0049400:intron 70.0%
ACCCGTACCGGGTACTCCGC+GGG - chr1_2:2688366-2688385 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2686379 2691557 2686379 ID=Msa0049400;Name=Msa0049400
chr1_2 mRNA 2686379 2691557 2686379 ID=Msa0049400-mRNA-1;Parent=Msa0049400;Name=Msa0049400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=243|1|1|1|1|1|6|290|410
chr1_2 exon 2686379 2686805 2686379 ID=Msa0049400-mRNA-1:exon:569;Parent=Msa0049400-mRNA-1
chr1_2 exon 2689064 2689303 2689064 ID=Msa0049400-mRNA-1:exon:570;Parent=Msa0049400-mRNA-1
chr1_2 exon 2689501 2689612 2689501 ID=Msa0049400-mRNA-1:exon:571;Parent=Msa0049400-mRNA-1
chr1_2 exon 2689737 2689911 2689737 ID=Msa0049400-mRNA-1:exon:572;Parent=Msa0049400-mRNA-1
chr1_2 exon 2690501 2690741 2690501 ID=Msa0049400-mRNA-1:exon:573;Parent=Msa0049400-mRNA-1
chr1_2 exon 2690987 2691557 2690987 ID=Msa0049400-mRNA-1:exon:574;Parent=Msa0049400-mRNA-1
chr1_2 five_prime_UTR 2686379 2686621 2686379 ID=Msa0049400-mRNA-1:five_prime_utr;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2686622 2686805 2686622 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2689064 2689303 2689064 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2689501 2689612 2689501 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2689737 2689911 2689737 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2690501 2690741 2690501 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 CDS 2690987 2691267 2690987 ID=Msa0049400-mRNA-1:cds;Parent=Msa0049400-mRNA-1
chr1_2 three_prime_UTR 2691268 2691557 2691268 ID=Msa0049400-mRNA-1:three_prime_utr;Parent=Msa0049400-mRNA-1
Gene Sequence

>Msa0049400

ATGTGGGCTGCTTCGTGTCTAGCGTCATGCTGCGCTTCCTGCGCATGCAGCGCTTGCACGTCCGTCGTTTCAAGCATCAGCCGTCGTTCCGCCAGGATCGCTTACTGCGGTCTCTTCGCTTTTTCCCTTGTCGTCGCTTGGTTGCTCCGTGAAGTTGCTGCTCCTCTCATGGAATCTATTCCCTGGATTAATCACTTTAAACAAACTCCAAGCCGTGAGTGGTTTGAGACTGATGCAGTTCTTCGTGTTAGCTTTGGAAACTTTCTATTTTTCACTATTCTGGCTACTATGATGGTTGGCGTCAAAACTCAGAAGGATCCTCGTGATGGCTTGCATCATGGGGGCTGGATGATGAAAGTTATCTGTTGGTTCCTTCTGGTTATCTTTATGTTTTTTCTACCGAACGAGATGATCAGCTTTTATGAAACAATATCGAAGTTTGGCTCTGGTATGTTTCTTCTTGTTCAAGTTGTGCTCTTGTTGGATTTTGTTCATCGATGGAATGACACATGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCTTTATTTGTTGTTTCACTTGTCTGTTACGTGGCCACTTTTGTGTTCTCGGGTGTTCTCTTTCATTTCTTCACGCCATCTGGACAAGACTGTGGAACCAATATCTTTTTCATTTCAATGACCCTGATGCTCGCATTTGTTTTTGCCATAGTAGCTTTGCATCCTGCTGTAAATGGAAGTGTTTTGCCTGCTTCTGTAATATCATTTTATTGCATGTATCTCTGCTATAGTGCACTGGCTAGTGAACCCAGAGATTACGAGTGCAATGGTCTTCACAATCACTCCAAAGCTGTTTCCACTGGCTCTCTTACTTTGGGATTAGTCACAACAGTTCTATCTGTTGTGTATTCTGCCGTGCGTGCTGGATCTTCTGCCGCAGTGCTTTCCCCACCAAGCTCACCTCGTGCTGGGAAGCCTTTGCTTCCATTGGATGCTAAGGATGAAGAAAGTAACGAGAAAGCAAAGCCAGTTACATATTCATATGCCTTCTTCCACTTGATTTTCTCTCTTGCTAGCATGTATTCTGCAATGCTTCTGACAGGTTGGTCTACCTCTGTTGGAGAGAGTGGTAAGTTGGTTGACGTGGGGTGGCCTTCAGTTTGGGTCCGGATTGTCACTTGCTGGGCAACTGCTTTGCTATACTTATGGTCTCTCGTAGCTCCTATCATGTTCCCCGAGAGGGAGTTCTAA

Protein sequence

>Msa0049400

MWAASCLASCCASCACSACTSVVSSISRRSARIAYCGLFAFSLVVAWLLREVAAPLMESIPWINHFKQTPSREWFETDAVLRVSFGNFLFFTILATMMVGVKTQKDPRDGLHHGGWMMKVICWFLLVIFMFFLPNEMISFYETISKFGSGMFLLVQVVLLLDFVHRWNDTWVGYDEQFWYVALFVVSLVCYVATFVFSGVLFHFFTPSGQDCGTNIFFISMTLMLAFVFAIVALHPAVNGSVLPASVISFYCMYLCYSALASEPRDYECNGLHNHSKAVSTGSLTLGLVTTVLSVVYSAVRAGSSAAVLSPPSSPRAGKPLLPLDAKDEESNEKAKPVTYSYAFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATALLYLWSLVAPIMFPEREF*