AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792790 MtrunA17_Chr7g0237091 97.317 410 11 0 1 410 1 410 0.0 818
Msa0792790 MtrunA17_Chr2g0287641 61.951 410 149 5 5 410 2 408 0.0 520
Msa0792790 MtrunA17_Chr6g0485111 31.841 402 252 9 11 409 16 398 1.59e-56 191
Msa0792790 MtrunA17_Chr8g0390691 31.088 386 233 9 31 409 34 393 9.97e-52 178
Msa0792790 MtrunA17_Chr1g0169271 28.796 382 246 8 31 408 51 410 1.97e-48 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792790 AT1G16180.2 81.122 392 72 1 21 410 21 412 0.0 632
Msa0792790 AT1G16180.1 81.122 392 72 1 21 410 21 412 0.0 632
Msa0792790 AT3G06170.1 64.634 410 139 6 4 410 2 408 0.0 530
Msa0792790 AT2G33205.1 33.681 383 226 10 31 408 49 408 5.60e-57 193
Msa0792790 AT2G33205.8 33.681 383 228 10 31 408 49 410 6.74e-57 192
Msa0792790 AT2G33205.5 33.681 383 228 10 31 408 49 410 6.74e-57 192
Msa0792790 AT3G24460.2 31.675 382 240 8 31 409 40 403 2.74e-56 191
Msa0792790 AT3G24460.1 31.675 382 240 8 31 409 40 403 2.74e-56 191
Msa0792790 AT4G13345.1 33.234 334 204 5 77 409 77 392 7.12e-52 179
Msa0792790 AT2G33205.9 32.973 370 222 10 31 395 49 397 2.58e-51 177
Msa0792790 AT4G13345.2 32.635 334 206 5 77 409 77 392 7.25e-51 176
Msa0792790 AT4G13345.6 32.635 334 206 5 77 409 77 392 7.25e-51 176
Msa0792790 AT2G33205.7 34.951 309 176 9 105 408 12 300 9.58e-49 168
Msa0792790 AT2G33205.2 34.951 309 176 9 105 408 27 315 1.70e-48 168
Msa0792790 AT4G13345.4 32.812 320 196 5 77 395 77 378 4.79e-46 163
Msa0792790 AT2G33205.6 32.258 341 205 10 31 366 49 368 5.93e-43 154
Msa0792790 AT4G13345.5 31.488 289 179 5 77 364 77 347 1.04e-37 140
Msa0792790 AT2G33205.3 31.746 252 162 6 31 277 49 295 7.87e-33 126
Msa0792790 AT2G33205.4 31.746 252 162 6 31 277 49 295 7.87e-33 126
Msa0792790 AT4G13345.3 33.333 195 128 2 77 270 77 270 7.98e-29 114
Msa0792790 AT4G13345.7 33.333 195 128 2 77 270 77 270 7.98e-29 114

Find 117 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGGGAAATTGGGGATTT+TGG 0.163605 5_3:-4526970 None:intergenic
CCACATCGATTGGTGGAATT+AGG 0.188928 5_3:-4527011 None:intergenic
TAAACTATATATATTTATTC+AGG 0.217656 5_3:-4531857 None:intergenic
CATTCTTATTTACAGGTAAA+TGG 0.242680 5_3:+4530893 Msa0792790:intron
CGGTTGGTACGCGTTGTTTC+GGG 0.246839 5_3:-4526820 None:intergenic
TTCCACTGGCTCTCTTACTT+TGG 0.277354 5_3:+4531033 Msa0792790:CDS
TCCACTGGCTCTCTTACTTT+GGG 0.280555 5_3:+4531034 Msa0792790:CDS
AGTTATCTGTTGGTTCCTTC+TGG 0.282675 5_3:+4529643 Msa0792790:CDS
TGTTCAAGTTGTGCTCTTGT+TGG 0.294130 5_3:+4529945 Msa0792790:CDS
CAACTGCTTTGCTATACTTA+TGG 0.303105 5_3:+4531610 Msa0792790:CDS
CGTGGGGTGGCCTTCAGTTT+GGG 0.314110 5_3:+4531566 Msa0792790:CDS
GCAGTTTATGTTTGCATCTT+CGG 0.316171 5_3:+4531921 Msa0792790:three_prime_UTR
GCAGAAACAATATCGAAGTT+TGG 0.320810 5_3:+4529904 Msa0792790:intron
CACATCGATTGGTGGAATTA+GGG 0.330941 5_3:-4527010 None:intergenic
TTTCATTTCTTCACGCCATC+TGG 0.334760 5_3:+4530211 Msa0792790:CDS
CTCGTGATGGCTTGCATCAT+GGG 0.341294 5_3:+4529606 Msa0792790:CDS
GGGTCCGGATTGTCACTTGC+TGG 0.349478 5_3:+4531586 Msa0792790:CDS
GAAGACGAGTTAGGAAATAA+AGG 0.349628 5_3:-4526898 None:intergenic
ACGTGGGGTGGCCTTCAGTT+TGG 0.350578 5_3:+4531565 Msa0792790:CDS
TCGGTTGGTACGCGTTGTTT+CGG 0.354779 5_3:-4526821 None:intergenic
CCTCGTGATGGCTTGCATCA+TGG 0.360125 5_3:+4529605 Msa0792790:CDS
AGCAGGATGCAAAGCTACTA+TGG 0.375060 5_3:-4530296 None:intergenic
CACTATTCTGGCTACTATGA+TGG 0.378652 5_3:+4529559 Msa0792790:CDS
GTGTATTCTGCCGTGCGTGC+TGG 0.380861 5_3:+4531082 Msa0792790:CDS
AATATTGTTGTGTCAGACTT+TGG 0.386298 5_3:-4526871 None:intergenic
GCAGTTCTTCGTGTTAGCTT+TGG 0.391753 5_3:+4529521 Msa0792790:CDS
TTGGATATGATGAGCAGTTC+TGG 0.396236 5_3:+4529998 Msa0792790:CDS
AAGGCATATGAATATGTAAC+TGG 0.407200 5_3:-4531450 None:intergenic
ACCATTGCACTCGTAATCTC+TGG 0.409135 5_3:-4530987 None:intergenic
CAAACAAATATATAGTAGTT+AGG 0.409658 5_3:-4531720 None:intergenic
TCCCTCTCGGGGAACATGAT+AGG 0.410613 5_3:-4531645 None:intergenic
AGAGCCAGTGGAAACAGCTT+TGG 0.410773 5_3:-4531023 None:intergenic
AGGGAAGCCTTTGCTTCCAT+TGG 0.430704 5_3:+4531392 Msa0792790:intron
CTCAATTTCTCATGGCTATG+AGG 0.435775 5_3:+4531683 Msa0792790:three_prime_UTR
CGTGCAAGCGCTGCATGCGC+AGG 0.436615 5_3:-4527065 None:intergenic
GAAGAGGAAGAAGACGAGTT+AGG 0.437007 5_3:-4526907 None:intergenic
GAGACCGCAGTAAGCGATCC+TGG 0.442881 5_3:-4527119 None:intergenic
GTCTCAAACCACTCACGGCT+TGG 0.455362 5_3:-4529494 None:intergenic
TAAAATGATATTACAGAAGC+AGG 0.455370 5_3:-4530926 None:intergenic
ACCACTTAGAACTCCCTCTC+GGG 0.455883 5_3:-4531657 None:intergenic
GGTGGCCTTCAGTTTGGGTC+CGG 0.455885 5_3:+4531571 Msa0792790:CDS
GGTCCGGATTGTCACTTGCT+GGG 0.471690 5_3:+4531587 Msa0792790:CDS
CAGCACGAGGTGAGCTTGGT+GGG 0.475655 5_3:-4531126 None:intergenic
TGAAGTTGCTGCTCCTCTCA+TGG 0.477270 5_3:+4527177 Msa0792790:CDS
TGAGAGGAGCAGCAACTTCA+CGG 0.481919 5_3:-4527174 None:intergenic
TTTGCTTCCATTGGATGCTA+AGG 0.484701 5_3:+4531401 Msa0792790:CDS
TTGCCCAGCAAGTGACAATC+CGG 0.490616 5_3:-4531590 None:intergenic
CTGCAATGCTTCTGACAGGT+TGG 0.496263 5_3:+4531508 Msa0792790:CDS
ACAATTGAAAACACGCCCAT+TGG 0.501051 5_3:-4531818 None:intergenic
GCATCAGCCGTCGTTCCGCC+AGG 0.502290 5_3:+4527101 Msa0792790:CDS
CGATGGAATGACACATGGGT+TGG 0.508752 5_3:+4529979 Msa0792790:CDS
GTGGTTTGCTCAATTTCTCA+TGG 0.509180 5_3:+4531675 Msa0792790:three_prime_UTR
TTACCAGCACGAGGTGAGCT+TGG 0.512418 5_3:-4531130 None:intergenic
ACAGGTTGGTCTACCTCTGT+TGG 0.513172 5_3:+4531522 Msa0792790:CDS
CACTCCAAAGCTGTTTCCAC+TGG 0.514617 5_3:+4531019 Msa0792790:CDS
TCCTATCATGTTCCCCGAGA+GGG 0.515037 5_3:+4531644 Msa0792790:CDS
AAACTATATATATTTATTCA+GGG 0.515670 5_3:-4531856 None:intergenic
GAGTGGTAAGTTGGTTGACG+TGG 0.518500 5_3:+4531548 Msa0792790:CDS
AGAGAAAATCAAGTGGAAGA+AGG 0.522573 5_3:-4531469 None:intergenic
ACAATATCGAAGTTTGGCTC+TGG 0.525610 5_3:+4529910 Msa0792790:CDS
TAAAAGCTGATCATCTCGTT+CGG 0.533573 5_3:-4529686 None:intergenic
CCAGCACGAGGTGAGCTTGG+TGG 0.535233 5_3:-4531127 None:intergenic
TTGTTAGGTCGAAAAGGAAG+AGG 0.536397 5_3:-4526923 None:intergenic
CCACCAAGCTCACCTCGTGC+TGG 0.536510 5_3:+4531127 Msa0792790:CDS
GGCAGAAGATCCAGCACGCA+CGG 0.537351 5_3:-4531092 None:intergenic
TCTTCATCCTTAGCATCCAA+TGG 0.538427 5_3:-4531408 None:intergenic
TCTACCTCTGTTGGAGAGAG+TGG 0.544514 5_3:+4531531 Msa0792790:CDS
ACGAAGCAGCCCACATCGAT+TGG 0.546368 5_3:-4527021 None:intergenic
TCGTGATGGCTTGCATCATG+GGG 0.548269 5_3:+4529607 Msa0792790:CDS
AACACCCGAGAACACAAAAG+TGG 0.551272 5_3:-4530185 None:intergenic
CCCCGAGAGGGAGTTCTAAG+TGG 0.552012 5_3:+4531656 Msa0792790:exon
ATTTCTCATGGCTATGAGGA+AGG 0.552951 5_3:+4531687 Msa0792790:three_prime_UTR
GTTCCACAGTCTTGTCCAGA+TGG 0.553670 5_3:-4530226 None:intergenic
TATTCTGCAATGCTTCTGAC+AGG 0.554920 5_3:+4531504 Msa0792790:CDS
GTATCTCTGCTATAGTGCAC+TGG 0.555945 5_3:+4530955 Msa0792790:CDS
TGTTGGAGAGAGTGGTAAGT+TGG 0.560804 5_3:+4531539 Msa0792790:CDS
ATTCTGGCTACTATGATGGT+TGG 0.561002 5_3:+4529563 Msa0792790:CDS
AACCACTTAGAACTCCCTCT+CGG 0.562795 5_3:-4531658 None:intergenic
GTTATGAATGACAATTCCAA+TGG 0.564254 5_3:+4531802 Msa0792790:three_prime_UTR
TTCATCGATGGAATGACACA+TGG 0.568693 5_3:+4529974 Msa0792790:CDS
GGAGCAACCAAGCGACGACA+AGG 0.573693 5_3:-4527153 None:intergenic
CATCAGTCTCAAACCACTCA+CGG 0.575605 5_3:-4529499 None:intergenic
TTATGAATGACAATTCCAAT+GGG 0.577676 5_3:+4531803 Msa0792790:three_prime_UTR
AGTGGTAAGTTGGTTGACGT+GGG 0.580162 5_3:+4531549 Msa0792790:CDS
TTAGCATCCAATGGAAGCAA+AGG 0.580922 5_3:-4531399 None:intergenic
TCCCAAAGTAAGAGAGCCAG+TGG 0.584338 5_3:-4531035 None:intergenic
AAGCAGCCCACATCGATTGG+TGG 0.585388 5_3:-4527018 None:intergenic
ACTCAGAAGGATCCTCGTGA+TGG 0.591184 5_3:+4529593 Msa0792790:CDS
AACAAACTCCAAGCCGTGAG+TGG 0.592734 5_3:+4529486 Msa0792790:CDS
CCATTGCACTCGTAATCTCT+GGG 0.592953 5_3:-4530986 None:intergenic
AAGCGATCCTGGCGGAACGA+CGG 0.600803 5_3:-4527108 None:intergenic
GAGCAACCAAGCGACGACAA+GGG 0.601750 5_3:-4527152 None:intergenic
AGCACGAGGTGAGCTTGGTG+GGG 0.602144 5_3:-4531125 None:intergenic
GGATGATGAAAGTTATCTGT+TGG 0.606558 5_3:+4529633 Msa0792790:CDS
CCTAATTCCACCAATCGATG+TGG 0.606566 5_3:+4527011 Msa0792790:exon
ACAATCCGGACCCAAACTGA+AGG 0.613766 5_3:-4531576 None:intergenic
GGTTGGCGTCAAAACTCAGA+AGG 0.617467 5_3:+4529580 Msa0792790:CDS
CAGGGAATAGATTCCATGAG+AGG 0.617656 5_3:-4527190 None:intergenic
ACGGCTGATGCTTGAAACGA+CGG 0.620690 5_3:-4527089 None:intergenic
ACGCCATCTGGACAAGACTG+TGG 0.625844 5_3:+4530223 Msa0792790:CDS
CTAATTCCACCAATCGATGT+GGG 0.626114 5_3:+4527012 Msa0792790:exon
GTAAGTTGGTTGACGTGGGG+TGG 0.626195 5_3:+4531553 Msa0792790:CDS
GTGGTAAGTTGGTTGACGTG+GGG 0.627255 5_3:+4531550 Msa0792790:CDS
CCCAGAGATTACGAGTGCAA+TGG 0.637382 5_3:+4530986 Msa0792790:CDS
CCATGATGCAAGCCATCACG+AGG 0.642661 5_3:-4529605 None:intergenic
CTTACCACTCTCTCCAACAG+AGG 0.657529 5_3:-4531535 None:intergenic
TAGCAAGAGAGAAAATCAAG+TGG 0.659036 5_3:-4531476 None:intergenic
TTTAATGATTTACCAGCACG+AGG 0.659959 5_3:-4531139 None:intergenic
AAAACATAAAGATAACCAGA+AGG 0.662610 5_3:-4529658 None:intergenic
CCACTTAGAACTCCCTCTCG+GGG 0.670567 5_3:-4531656 None:intergenic
TGTTTCACTTGTCTGTTACG+TGG 0.674098 5_3:+4530162 Msa0792790:CDS
CTCCTATCATGTTCCCCGAG+AGG 0.674148 5_3:+4531643 Msa0792790:CDS
TCCGCCAGGATCGCTTACTG+CGG 0.674158 5_3:+4527115 Msa0792790:CDS
CGTGATGGCTTGCATCATGG+GGG 0.676109 5_3:+4529608 Msa0792790:CDS
GCTTGGTGGGGAAAGCACTG+CGG 0.746991 5_3:-4531113 None:intergenic
TCATCGATGGAATGACACAT+GGG 0.749727 5_3:+4529975 Msa0792790:CDS
ACCGCAGTAAGCGATCCTGG+CGG 0.774022 5_3:-4527116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTAATTTTTA+TGG + chr5_3:4530080-4530099 Msa0792790:intron 0.0%
!! TATATATAAAAAAGAAAGTT+GGG - chr5_3:4527453-4527472 None:intergenic 10.0%
!! AAAAACAAAAAAACAAAAAT+TGG + chr5_3:4528702-4528721 Msa0792790:intron 10.0%
!! AACAATATTTAATAATTAAC+AGG - chr5_3:4530520-4530539 None:intergenic 10.0%
!! AAACTATATATATTTATTCA+GGG - chr5_3:4531859-4531878 None:intergenic 10.0%
!! TAAACTATATATATTTATTC+AGG - chr5_3:4531860-4531879 None:intergenic 10.0%
!! AAATTATAAAGAGGTAAAAA+AGG - chr5_3:4527248-4527267 None:intergenic 15.0%
!! CTATATATAAAAAAGAAAGT+TGG - chr5_3:4527454-4527473 None:intergenic 15.0%
!!! CAACTTTCTTTTTTATATAT+AGG + chr5_3:4527452-4527471 Msa0792790:intron 15.0%
!! TTAATTCTTAGATAAGATAT+AGG + chr5_3:4528089-4528108 Msa0792790:intron 15.0%
!! TAATTCTTAGATAAGATATA+GGG + chr5_3:4528090-4528109 Msa0792790:intron 15.0%
!! TTAACATATAAATATACAAG+TGG - chr5_3:4528545-4528564 None:intergenic 15.0%
!! CTTGTATATTTATATGTTAA+AGG + chr5_3:4528545-4528564 Msa0792790:intron 15.0%
!!! AAAACAATTTGAATTTGTTA+TGG + chr5_3:4528938-4528957 Msa0792790:intron 15.0%
!!! TAAATTTTATGAAACTGTTT+GGG - chr5_3:4529328-4529347 None:intergenic 15.0%
!!! ATAAATTTTATGAAACTGTT+TGG - chr5_3:4529329-4529348 None:intergenic 15.0%
!!! GTAATTTTTTTTAAAGCTTT+TGG + chr5_3:4529865-4529884 Msa0792790:intron 15.0%
!!! ATTATTTTACTTATGTAACA+TGG + chr5_3:4530041-4530060 Msa0792790:intron 15.0%
!!! CTATTTATAAGAGAAATTTT+GGG + chr5_3:4530621-4530640 Msa0792790:intron 15.0%
!!! TATTTATAAGAGAAATTTTG+GGG + chr5_3:4530622-4530641 Msa0792790:intron 15.0%
!!! TATATATAACTCAATTTTTC+TGG + chr5_3:4530777-4530796 Msa0792790:intron 15.0%
!! TCTACAAAATAAAGAAATAT+TGG - chr5_3:4531167-4531186 None:intergenic 15.0%
!! CAAAATTCGAAATTATAAAG+AGG - chr5_3:4527257-4527276 None:intergenic 20.0%
!!! CATTAATTTTTGATCAAACA+AGG - chr5_3:4527393-4527412 None:intergenic 20.0%
!! TGATCAAAAATTAATGTATC+TGG + chr5_3:4527397-4527416 Msa0792790:intron 20.0%
!!! TTTTATATATAGGAACAGAA+AGG + chr5_3:4527462-4527481 Msa0792790:intron 20.0%
!! TTTCTCAAAAAACAAAGTTA+CGG + chr5_3:4528192-4528211 Msa0792790:intron 20.0%
!!! ATTTAAAATAACATAGCATG+AGG + chr5_3:4528238-4528257 Msa0792790:intron 20.0%
!!! TCATTTTGTCAAGAAAAAAA+CGG + chr5_3:4528628-4528647 Msa0792790:intron 20.0%
!!! GTTTTTTTGTTTTTAAACCT+TGG - chr5_3:4528696-4528715 None:intergenic 20.0%
!! AAACAAAAATTGGTACATTA+TGG + chr5_3:4528712-4528731 Msa0792790:intron 20.0%
!! AACAAAAATTGGTACATTAT+GGG + chr5_3:4528713-4528732 Msa0792790:intron 20.0%
!!! TTTATATGTTGTTTTTGTCT+AGG + chr5_3:4528892-4528911 Msa0792790:intron 20.0%
!! TATGGAAATAGATTATTACA+AGG + chr5_3:4528956-4528975 Msa0792790:intron 20.0%
!! AACGATTTGAAAAAAAAGAA+AGG - chr5_3:4529015-4529034 None:intergenic 20.0%
!!! AAATTTTATGAAACTGTTTG+GGG - chr5_3:4529327-4529346 None:intergenic 20.0%
!!! TTGATGATTTTACTAACAAA+AGG - chr5_3:4529793-4529812 None:intergenic 20.0%
!! CATTGAAATGAAAAAGATAT+TGG - chr5_3:4530251-4530270 None:intergenic 20.0%
!! CCAAAATTTCTCTTATAAAT+AGG - chr5_3:4530623-4530642 None:intergenic 20.0%
!!! CCTATTTATAAGAGAAATTT+TGG + chr5_3:4530620-4530639 Msa0792790:intron 20.0%
!! TTAACAAAAATTGATGTATC+TGG + chr5_3:4530645-4530664 Msa0792790:intron 20.0%
!! ATTCCTAACTAAACAAAATA+AGG - chr5_3:4530824-4530843 None:intergenic 20.0%
!!! TATTTTGTTTAGTTAGGAAT+TGG + chr5_3:4530824-4530843 Msa0792790:intron 20.0%
!! TAGATATTCAATTCAACATT+GGG - chr5_3:4531217-4531236 None:intergenic 20.0%
!! ATAGATATTCAATTCAACAT+TGG - chr5_3:4531218-4531237 None:intergenic 20.0%
!! CAAACAAATATATAGTAGTT+AGG - chr5_3:4531723-4531742 None:intergenic 20.0%
!!! TGTTTCTTGACTTTTTCAAT+CGG - chr5_3:4526843-4526862 None:intergenic 25.0%
! AAGAGGTAAAAAAGGAATTA+GGG - chr5_3:4527240-4527259 None:intergenic 25.0%
! AAAGAGGTAAAAAAGGAATT+AGG - chr5_3:4527241-4527260 None:intergenic 25.0%
! TGTGAAATTTCTGTTTCATA+TGG + chr5_3:4527531-4527550 Msa0792790:intron 25.0%
!!! ATAACTTGTTTATCCAAACA+AGG - chr5_3:4527726-4527745 None:intergenic 25.0%
! CTACTTATAGTTCATACAAA+AGG - chr5_3:4527834-4527853 None:intergenic 25.0%
! TTTCAGAAAACTTATGTCAT+CGG + chr5_3:4527880-4527899 Msa0792790:intron 25.0%
! GGATAATCTCTTTAACTATA+TGG + chr5_3:4527901-4527920 Msa0792790:intron 25.0%
! TTACAATAAAAATCAGCTCA+GGG - chr5_3:4528024-4528043 None:intergenic 25.0%
! TTCTCAAAAAACAAAGTTAC+GGG + chr5_3:4528193-4528212 Msa0792790:intron 25.0%
!!! AGATATTCATTTGTCACTTT+TGG + chr5_3:4528336-4528355 Msa0792790:intron 25.0%
! TATTGCAATCTATCATACAA+GGG - chr5_3:4528422-4528441 None:intergenic 25.0%
!! TTCACAAAGTACTAATACTA+GGG - chr5_3:4528603-4528622 None:intergenic 25.0%
!! TTTCACAAAGTACTAATACT+AGG - chr5_3:4528604-4528623 None:intergenic 25.0%
!!! GTTTTTTTCTTGACAAAATG+AGG - chr5_3:4528629-4528648 None:intergenic 25.0%
!!! TTTGTTTTTAAACCTTGGTA+CGG - chr5_3:4528691-4528710 None:intergenic 25.0%
! AATAGATTATTACAAGGCTT+AGG + chr5_3:4528962-4528981 Msa0792790:intron 25.0%
! TTACATAGTATGAAACTGTT+TGG + chr5_3:4529119-4529138 Msa0792790:intron 25.0%
! TACATAGTATGAAACTGTTT+GGG + chr5_3:4529120-4529139 Msa0792790:intron 25.0%
!! AATTTTATGAAACTGTTTGG+GGG - chr5_3:4529326-4529345 None:intergenic 25.0%
! TGTATTCCATATGAAACATA+AGG - chr5_3:4529388-4529407 None:intergenic 25.0%
! ACGTATTTGTAAAATGTTGT+AGG + chr5_3:4529449-4529468 Msa0792790:intron 25.0%
! CGTATTTGTAAAATGTTGTA+GGG + chr5_3:4529450-4529469 Msa0792790:intron 25.0%
!!! CTTTCTATTTTTCACTATTC+TGG + chr5_3:4529547-4529566 Msa0792790:CDS 25.0%
! AAAACATAAAGATAACCAGA+AGG - chr5_3:4529661-4529680 None:intergenic 25.0%
!!! TGTTTTTAAATGCTTTGTCT+TGG + chr5_3:4530536-4530555 Msa0792790:intron 25.0%
! ATTTCTCTTATAAATAGGAC+CGG - chr5_3:4530618-4530637 None:intergenic 25.0%
! GTAATATTATATACTACCTC+CGG - chr5_3:4530726-4530745 None:intergenic 25.0%
!!! AGTTAGGAATTGGTTTTATT+TGG + chr5_3:4530834-4530853 Msa0792790:intron 25.0%
! CATTTACCTGTAAATAAGAA+TGG - chr5_3:4530895-4530914 None:intergenic 25.0%
!! CATTCTTATTTACAGGTAAA+TGG + chr5_3:4530893-4530912 Msa0792790:intron 25.0%
! TAAAATGATATTACAGAAGC+AGG - chr5_3:4530929-4530948 None:intergenic 25.0%
!! ATATCTATGAATGCTTTTGT+TGG + chr5_3:4531230-4531249 Msa0792790:intron 25.0%
!!! TAGGTTTTAGTGCTATATTA+TGG + chr5_3:4531272-4531291 Msa0792790:intron 25.0%
!!! AGGTTTTAGTGCTATATTAT+GGG + chr5_3:4531273-4531292 Msa0792790:intron 25.0%
! TTATGAATGACAATTCCAAT+GGG + chr5_3:4531803-4531822 Msa0792790:three_prime_UTR 25.0%
AATATTGTTGTGTCAGACTT+TGG - chr5_3:4526874-4526893 None:intergenic 30.0%
!!! TTTGAGATTGTTTTTGGGTT+GGG - chr5_3:4526989-4527008 None:intergenic 30.0%
!!! TTTTGAGATTGTTTTTGGGT+TGG - chr5_3:4526990-4527009 None:intergenic 30.0%
!!! AGGGTTTTGAGATTGTTTTT+GGG - chr5_3:4526994-4527013 None:intergenic 30.0%
!!! TAGGGTTTTGAGATTGTTTT+TGG - chr5_3:4526995-4527014 None:intergenic 30.0%
AGAGGGAAAAGTTAATTACA+GGG - chr5_3:4527211-4527230 None:intergenic 30.0%
AAGAGGGAAAAGTTAATTAC+AGG - chr5_3:4527212-4527231 None:intergenic 30.0%
!! TGTGTATGAGCTATTTCTAT+AGG + chr5_3:4527660-4527679 Msa0792790:intron 30.0%
!! TCTGTATGAGCTATTTCTAT+AGG + chr5_3:4527785-4527804 Msa0792790:intron 30.0%
GTTACAATAAAAATCAGCTC+AGG - chr5_3:4528025-4528044 None:intergenic 30.0%
!! TTTTTGAGAAATGTCGTATC+TGG - chr5_3:4528183-4528202 None:intergenic 30.0%
AAAAAACAAAGTTACGGGTA+CGG + chr5_3:4528198-4528217 Msa0792790:intron 30.0%
AGGAAATTATATCTCTCAAC+CGG + chr5_3:4528258-4528277 Msa0792790:intron 30.0%
!! CTTTTTCATTAGCAATTCTG+TGG + chr5_3:4528295-4528314 Msa0792790:intron 30.0%
! AGAATAAGATGTCATTTGCT+CGG - chr5_3:4528389-4528408 None:intergenic 30.0%
CTATTGCAATCTATCATACA+AGG - chr5_3:4528423-4528442 None:intergenic 30.0%
! ATACAATGATTTTCCTCTCA+AGG - chr5_3:4528510-4528529 None:intergenic 30.0%
! TCACAAAGTACTAATACTAG+GGG - chr5_3:4528602-4528621 None:intergenic 30.0%
TGAAATTGCTGTGTTTCATA+TGG + chr5_3:4529041-4529060 Msa0792790:intron 30.0%
TGCAGTAAAAAATCAGATCA+GGG - chr5_3:4529097-4529116 None:intergenic 30.0%
TTGCAGTAAAAAATCAGATC+AGG - chr5_3:4529098-4529117 None:intergenic 30.0%
TTCACCTTCAAGTCATAATA+AGG - chr5_3:4529425-4529444 None:intergenic 30.0%
CAATAAATGAAACTTACAGC+AGG - chr5_3:4530316-4530335 None:intergenic 30.0%
AGATCTACACATGAAAAACA+AGG - chr5_3:4530373-4530392 None:intergenic 30.0%
TGCGCATAAGTTAAAACAAA+TGG - chr5_3:4530461-4530480 None:intergenic 30.0%
TCAACCAAAGTTAATGTATG+TGG - chr5_3:4530684-4530703 None:intergenic 30.0%
!!! GGACCTTATTTTGTTTAGTT+AGG + chr5_3:4530818-4530837 Msa0792790:intron 30.0%
ATAGACTATTCATGATCTGT+TGG + chr5_3:4530867-4530886 Msa0792790:intron 30.0%
! TTGGATCCATTCTTATTTAC+AGG + chr5_3:4530886-4530905 Msa0792790:intron 30.0%
AAGGCATATGAATATGTAAC+TGG - chr5_3:4531453-4531472 None:intergenic 30.0%
GTTATGAATGACAATTCCAA+TGG + chr5_3:4531802-4531821 Msa0792790:three_prime_UTR 30.0%
!!! TCTTGACTTTTTCAATCGGT+TGG - chr5_3:4526839-4526858 None:intergenic 35.0%
GAAGACGAGTTAGGAAATAA+AGG - chr5_3:4526901-4526920 None:intergenic 35.0%
!!! TTGGTTTTGTTAGGTCGAAA+AGG - chr5_3:4526932-4526951 None:intergenic 35.0%
!! ATTTTGGAAGATGGAATTGG+GGG - chr5_3:4526957-4526976 None:intergenic 35.0%
!! GATTTTGGAAGATGGAATTG+GGG - chr5_3:4526958-4526977 None:intergenic 35.0%
!! GGATTTTGGAAGATGGAATT+GGG - chr5_3:4526959-4526978 None:intergenic 35.0%
!! AAATTGGGGATTTTGGAAGA+TGG - chr5_3:4526966-4526985 None:intergenic 35.0%
!!! TGTTTTTGGGTTGGGAAATT+GGG - chr5_3:4526981-4527000 None:intergenic 35.0%
!!! TTGTTTTTGGGTTGGGAAAT+TGG - chr5_3:4526982-4527001 None:intergenic 35.0%
AGGAATTAGGGTTTGAAAGA+GGG - chr5_3:4527228-4527247 None:intergenic 35.0%
AAGGAATTAGGGTTTGAAAG+AGG - chr5_3:4527229-4527248 None:intergenic 35.0%
! GTATGTCAACTTGCTTAGAA+TGG + chr5_3:4527570-4527589 Msa0792790:intron 35.0%
! TAGAATGGCATGATTTTGTG+TGG + chr5_3:4527585-4527604 Msa0792790:intron 35.0%
CGAAATTGCTACATTTCACA+TGG + chr5_3:4527968-4527987 Msa0792790:intron 35.0%
AATAAAAATCAGCTCAGGGA+GGG - chr5_3:4528020-4528039 None:intergenic 35.0%
AAATTATATCTCTCAACCGG+CGG + chr5_3:4528261-4528280 Msa0792790:intron 35.0%
!! AAAAGCACTATAATTTCCGC+CGG - chr5_3:4528280-4528299 None:intergenic 35.0%
TTGCTCGGAGAAAAGAAAAA+GGG - chr5_3:4528374-4528393 None:intergenic 35.0%
TTTGCTCGGAGAAAAGAAAA+AGG - chr5_3:4528375-4528394 None:intergenic 35.0%
GAAAAGGAAATAGTGCAACA+TGG - chr5_3:4528454-4528473 None:intergenic 35.0%
ATGTGACAATTGTGCAAGAA+AGG - chr5_3:4528484-4528503 None:intergenic 35.0%
TTTAAACCTTGGTACGGTTA+CGG - chr5_3:4528685-4528704 None:intergenic 35.0%
AGTTATTTGAGCTTATTGGC+CGG + chr5_3:4528833-4528852 Msa0792790:intron 35.0%
ATATGGAGATTACACGAAGA+TGG + chr5_3:4529058-4529077 Msa0792790:intron 35.0%
GTAAAAAATCAGATCAGGGA+AGG - chr5_3:4529093-4529112 None:intergenic 35.0%
AAAACAACTTACAGCTTGTG+CGG - chr5_3:4529247-4529266 None:intergenic 35.0%
CTCAAATAAGCAATCCAAAC+AGG + chr5_3:4529362-4529381 Msa0792790:intron 35.0%
TATGAAACATAAGGCCTGTT+TGG - chr5_3:4529379-4529398 None:intergenic 35.0%
! AACAGGCCTTATGTTTCATA+TGG + chr5_3:4529379-4529398 Msa0792790:intron 35.0%
!! GTAGCCTTATTATGACTTGA+AGG + chr5_3:4529418-4529437 Msa0792790:intron 35.0%
GGATGATGAAAGTTATCTGT+TGG + chr5_3:4529633-4529652 Msa0792790:CDS 35.0%
TAAAAGCTGATCATCTCGTT+CGG - chr5_3:4529689-4529708 None:intergenic 35.0%
! AACGAGATGATCAGCTTTTA+TGG + chr5_3:4529689-4529708 Msa0792790:CDS 35.0%
GCAGAAACAATATCGAAGTT+TGG + chr5_3:4529904-4529923 Msa0792790:intron 35.0%
! TGTTGGATTTTGTTCATCGA+TGG + chr5_3:4529962-4529981 Msa0792790:CDS 35.0%
! AATTGCTTCGTTGTTGTTAC+AGG + chr5_3:4530122-4530141 Msa0792790:intron 35.0%
AAAAACAAATGCGAGCATCA+GGG - chr5_3:4530275-4530294 None:intergenic 35.0%
ACATTACAAAATACTCCCTC+CGG + chr5_3:4530596-4530615 Msa0792790:intron 35.0%
CAGTCCACATACATTAACTT+TGG + chr5_3:4530677-4530696 Msa0792790:intron 35.0%
CCAAACTTTCTCTTATAGAC+CGG + chr5_3:4530704-4530723 Msa0792790:intron 35.0%
TTTAATGATTTACCAGCACG+AGG - chr5_3:4531142-4531161 None:intergenic 35.0%
GTGTCTAGATTTGTGAACTT+AGG - chr5_3:4531195-4531214 None:intergenic 35.0%
AGAGAAAATCAAGTGGAAGA+AGG - chr5_3:4531472-4531491 None:intergenic 35.0%
TAGCAAGAGAGAAAATCAAG+TGG - chr5_3:4531479-4531498 None:intergenic 35.0%
! CAACTGCTTTGCTATACTTA+TGG + chr5_3:4531610-4531629 Msa0792790:CDS 35.0%
GCAGTTTATGTTTGCATCTT+CGG + chr5_3:4531921-4531940 Msa0792790:three_prime_UTR 35.0%
TTGTTAGGTCGAAAAGGAAG+AGG - chr5_3:4526926-4526945 None:intergenic 40.0%
!!! TTGGGGGTTTTGGTTTTGTT+AGG - chr5_3:4526941-4526960 None:intergenic 40.0%
!! GGGATTTTGGAAGATGGAAT+TGG - chr5_3:4526960-4526979 None:intergenic 40.0%
!!! GTTTTTGGGTTGGGAAATTG+GGG - chr5_3:4526980-4526999 None:intergenic 40.0%
! CACATCGATTGGTGGAATTA+GGG - chr5_3:4527013-4527032 None:intergenic 40.0%
CTAATTCCACCAATCGATGT+GGG + chr5_3:4527012-4527031 Msa0792790:exon 40.0%
GAACTTCAACTCGCTTAGAA+TGG + chr5_3:4527695-4527714 Msa0792790:intron 40.0%
TAGAATGGCATGACCTTGTT+TGG + chr5_3:4527710-4527729 Msa0792790:intron 40.0%
CAATAAAAATCAGCTCAGGG+AGG - chr5_3:4528021-4528040 None:intergenic 40.0%
TAAGATATAGGGCCTCTTTG+CGG + chr5_3:4528101-4528120 Msa0792790:intron 40.0%
TGCTCGGAGAAAAGAAAAAG+GGG - chr5_3:4528373-4528392 None:intergenic 40.0%
! CAAGAAAGGCATGAAGGAAA+AGG - chr5_3:4528470-4528489 None:intergenic 40.0%
! ATTGTGCAAGAAAGGCATGA+AGG - chr5_3:4528476-4528495 None:intergenic 40.0%
ATTGTCACATAAGCCTTGAG+AGG + chr5_3:4528494-4528513 Msa0792790:intron 40.0%
AGTACTAATACTAGGGGAGT+AGG - chr5_3:4528596-4528615 None:intergenic 40.0%
GGCCAGTTATTTGAGCTTAT+TGG + chr5_3:4528829-4528848 Msa0792790:intron 40.0%
GGCCAATAAGCTCAAATAAC+TGG - chr5_3:4528834-4528853 None:intergenic 40.0%
! CACTATTCTGGCTACTATGA+TGG + chr5_3:4529559-4529578 Msa0792790:CDS 40.0%
! ATTCTGGCTACTATGATGGT+TGG + chr5_3:4529563-4529582 Msa0792790:CDS 40.0%
!! AGTTATCTGTTGGTTCCTTC+TGG + chr5_3:4529643-4529662 Msa0792790:CDS 40.0%
! GATGATCAGCTTTTATGGTG+AGG + chr5_3:4529694-4529713 Msa0792790:intron 40.0%
CAAAAGGAAGCTAACATGCA+TGG - chr5_3:4529777-4529796 None:intergenic 40.0%
! ACAATATCGAAGTTTGGCTC+TGG + chr5_3:4529910-4529929 Msa0792790:CDS 40.0%
!! TGTTCAAGTTGTGCTCTTGT+TGG + chr5_3:4529945-4529964 Msa0792790:CDS 40.0%
TTCATCGATGGAATGACACA+TGG + chr5_3:4529974-4529993 Msa0792790:CDS 40.0%
TCATCGATGGAATGACACAT+GGG + chr5_3:4529975-4529994 Msa0792790:CDS 40.0%
TTGGATATGATGAGCAGTTC+TGG + chr5_3:4529998-4530017 Msa0792790:CDS 40.0%
TGTTTCACTTGTCTGTTACG+TGG + chr5_3:4530162-4530181 Msa0792790:CDS 40.0%
TTTCATTTCTTCACGCCATC+TGG + chr5_3:4530211-4530230 Msa0792790:CDS 40.0%
CAAAAACAAATGCGAGCATC+AGG - chr5_3:4530276-4530295 None:intergenic 40.0%
CTTCATGTGATAGACAACAG+TGG - chr5_3:4530398-4530417 None:intergenic 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr5_3:4530614-4530633 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr5_3:4530615-4530634 None:intergenic 40.0%
CCGGTCTATAAGAGAAAGTT+TGG - chr5_3:4530707-4530726 None:intergenic 40.0%
AACTTTCTCTTATAGACCGG+AGG + chr5_3:4530707-4530726 Msa0792790:intron 40.0%
CCTAAAATCACTCAGCTTCA+TGG - chr5_3:4531256-4531275 None:intergenic 40.0%
! CCATGAAGCTGAGTGATTTT+AGG + chr5_3:4531253-4531272 Msa0792790:intron 40.0%
! TACTGACAATCTGCCATTTC+TGG + chr5_3:4531360-4531379 Msa0792790:intron 40.0%
!! CCATTTCTGGTTATTGTGCA+GGG + chr5_3:4531373-4531392 Msa0792790:intron 40.0%
TTAGCATCCAATGGAAGCAA+AGG - chr5_3:4531402-4531421 None:intergenic 40.0%
TTTGCTTCCATTGGATGCTA+AGG + chr5_3:4531401-4531420 Msa0792790:CDS 40.0%
TCTTCATCCTTAGCATCCAA+TGG - chr5_3:4531411-4531430 None:intergenic 40.0%
TATTCTGCAATGCTTCTGAC+AGG + chr5_3:4531504-4531523 Msa0792790:CDS 40.0%
!! GTGGTTTGCTCAATTTCTCA+TGG + chr5_3:4531675-4531694 Msa0792790:three_prime_UTR 40.0%
CTCAATTTCTCATGGCTATG+AGG + chr5_3:4531683-4531702 Msa0792790:three_prime_UTR 40.0%
ATTTCTCATGGCTATGAGGA+AGG + chr5_3:4531687-4531706 Msa0792790:three_prime_UTR 40.0%
ACAATTGAAAACACGCCCAT+TGG - chr5_3:4531821-4531840 None:intergenic 40.0%
GAAGAGGAAGAAGACGAGTT+AGG - chr5_3:4526910-4526929 None:intergenic 45.0%
! GAAGATGGAATTGGGGGTTT+TGG - chr5_3:4526951-4526970 None:intergenic 45.0%
! GGTTGGGAAATTGGGGATTT+TGG - chr5_3:4526973-4526992 None:intergenic 45.0%
! CCACATCGATTGGTGGAATT+AGG - chr5_3:4527014-4527033 None:intergenic 45.0%
CCTAATTCCACCAATCGATG+TGG + chr5_3:4527011-4527030 Msa0792790:exon 45.0%
CAGGGAATAGATTCCATGAG+AGG - chr5_3:4527193-4527212 None:intergenic 45.0%
AACAAAGTTACGGGTACGGT+AGG + chr5_3:4528202-4528221 Msa0792790:intron 45.0%
TTTGCAAAACGTACCCGTAC+CGG - chr5_3:4528785-4528804 None:intergenic 45.0%
AGTCTCACAACTGCTTATGC+CGG - chr5_3:4528855-4528874 None:intergenic 45.0%
CATCAGTCTCAAACCACTCA+CGG - chr5_3:4529502-4529521 None:intergenic 45.0%
! GCAGTTCTTCGTGTTAGCTT+TGG + chr5_3:4529521-4529540 Msa0792790:CDS 45.0%
!! GAGCAGTTCTGGTCAGTTTT+AGG + chr5_3:4530009-4530028 Msa0792790:intron 45.0%
AACACCCGAGAACACAAAAG+TGG - chr5_3:4530188-4530207 None:intergenic 45.0%
AGCAGGATGCAAAGCTACTA+TGG - chr5_3:4530299-4530318 None:intergenic 45.0%
TGGCGTGAAGTAACAATTGC+TGG + chr5_3:4530797-4530816 Msa0792790:intron 45.0%
GTATCTCTGCTATAGTGCAC+TGG + chr5_3:4530955-4530974 Msa0792790:CDS 45.0%
CCATTGCACTCGTAATCTCT+GGG - chr5_3:4530989-4531008 None:intergenic 45.0%
ACCATTGCACTCGTAATCTC+TGG - chr5_3:4530990-4531009 None:intergenic 45.0%
!! TTCCACTGGCTCTCTTACTT+TGG + chr5_3:4531033-4531052 Msa0792790:CDS 45.0%
!! TCCACTGGCTCTCTTACTTT+GGG + chr5_3:4531034-4531053 Msa0792790:CDS 45.0%
!! GCCATTTCTGGTTATTGTGC+AGG + chr5_3:4531372-4531391 Msa0792790:intron 45.0%
CCCTGCACAATAACCAGAAA+TGG - chr5_3:4531376-4531395 None:intergenic 45.0%
TGTTGGAGAGAGTGGTAAGT+TGG + chr5_3:4531539-4531558 Msa0792790:CDS 45.0%
!! AGTGGTAAGTTGGTTGACGT+GGG + chr5_3:4531549-4531568 Msa0792790:CDS 45.0%
AACCACTTAGAACTCCCTCT+CGG - chr5_3:4531661-4531680 None:intergenic 45.0%
!! TTAATAATAAATTGTATATA+TGG - chr5_3:4527344-4527363 None:intergenic 5.0%
!! AAATATAAAATATCAAATAA+AGG - chr5_3:4530070-4530089 None:intergenic 5.0%
! TCGGTTGGTACGCGTTGTTT+CGG - chr5_3:4526824-4526843 None:intergenic 50.0%
ACGGCTGATGCTTGAAACGA+CGG - chr5_3:4527092-4527111 None:intergenic 50.0%
! CTTTTTCCCTTGTCGTCGCT+TGG + chr5_3:4527146-4527165 Msa0792790:CDS 50.0%
TGAGAGGAGCAGCAACTTCA+CGG - chr5_3:4527177-4527196 None:intergenic 50.0%
TGAAGTTGCTGCTCCTCTCA+TGG + chr5_3:4527177-4527196 Msa0792790:CDS 50.0%
TTGCAAAACGTACCCGTACC+GGG - chr5_3:4528784-4528803 None:intergenic 50.0%
! TTGAAGTACCCGTGCTTCAG+AGG + chr5_3:4528805-4528824 Msa0792790:intron 50.0%
AACAAACTCCAAGCCGTGAG+TGG + chr5_3:4529486-4529505 Msa0792790:CDS 50.0%
GGTTGGCGTCAAAACTCAGA+AGG + chr5_3:4529580-4529599 Msa0792790:CDS 50.0%
ACTCAGAAGGATCCTCGTGA+TGG + chr5_3:4529593-4529612 Msa0792790:CDS 50.0%
! CTCGTGATGGCTTGCATCAT+GGG + chr5_3:4529606-4529625 Msa0792790:CDS 50.0%
! TCGTGATGGCTTGCATCATG+GGG + chr5_3:4529607-4529626 Msa0792790:CDS 50.0%
CGATGGAATGACACATGGGT+TGG + chr5_3:4529979-4529998 Msa0792790:CDS 50.0%
!!! CGTGGCCACTTTTGTGTTCT+CGG + chr5_3:4530180-4530199 Msa0792790:CDS 50.0%
!!! GTGGCCACTTTTGTGTTCTC+GGG + chr5_3:4530181-4530200 Msa0792790:CDS 50.0%
! GTTCCACAGTCTTGTCCAGA+TGG - chr5_3:4530229-4530248 None:intergenic 50.0%
CCCAGAGATTACGAGTGCAA+TGG + chr5_3:4530986-4531005 Msa0792790:CDS 50.0%
! CACTCCAAAGCTGTTTCCAC+TGG + chr5_3:4531019-4531038 Msa0792790:CDS 50.0%
AGAGCCAGTGGAAACAGCTT+TGG - chr5_3:4531026-4531045 None:intergenic 50.0%
TCCCAAAGTAAGAGAGCCAG+TGG - chr5_3:4531038-4531057 None:intergenic 50.0%
AGGGAAGCCTTTGCTTCCAT+TGG + chr5_3:4531392-4531411 Msa0792790:intron 50.0%
CTGCAATGCTTCTGACAGGT+TGG + chr5_3:4531508-4531527 Msa0792790:CDS 50.0%
!! ACAGGTTGGTCTACCTCTGT+TGG + chr5_3:4531522-4531541 Msa0792790:CDS 50.0%
TCTACCTCTGTTGGAGAGAG+TGG + chr5_3:4531531-4531550 Msa0792790:CDS 50.0%
CTTACCACTCTCTCCAACAG+AGG - chr5_3:4531538-4531557 None:intergenic 50.0%
!! GAGTGGTAAGTTGGTTGACG+TGG + chr5_3:4531548-4531567 Msa0792790:CDS 50.0%
!! GTGGTAAGTTGGTTGACGTG+GGG + chr5_3:4531550-4531569 Msa0792790:CDS 50.0%
ACAATCCGGACCCAAACTGA+AGG - chr5_3:4531579-4531598 None:intergenic 50.0%
TTGCCCAGCAAGTGACAATC+CGG - chr5_3:4531593-4531612 None:intergenic 50.0%
TCCTATCATGTTCCCCGAGA+GGG + chr5_3:4531644-4531663 Msa0792790:CDS 50.0%
ACCACTTAGAACTCCCTCTC+GGG - chr5_3:4531660-4531679 None:intergenic 50.0%
! CGGTTGGTACGCGTTGTTTC+GGG - chr5_3:4526823-4526842 None:intergenic 55.0%
! AAGCAGCCCACATCGATTGG+TGG - chr5_3:4527021-4527040 None:intergenic 55.0%
ACGAAGCAGCCCACATCGAT+TGG - chr5_3:4527024-4527043 None:intergenic 55.0%
GAGCAACCAAGCGACGACAA+GGG - chr5_3:4527155-4527174 None:intergenic 55.0%
ACCTTGGTACGGTTACGGTG+CGG - chr5_3:4528680-4528699 None:intergenic 55.0%
CATACGAGTACCAGTACCCG+CGG + chr5_3:4528754-4528773 Msa0792790:intron 55.0%
AAGTACCCGTGCTTCAGAGG+CGG + chr5_3:4528808-4528827 Msa0792790:intron 55.0%
GTCTCAAACCACTCACGGCT+TGG - chr5_3:4529497-4529516 None:intergenic 55.0%
CCATGATGCAAGCCATCACG+AGG - chr5_3:4529608-4529627 None:intergenic 55.0%
! CCTCGTGATGGCTTGCATCA+TGG + chr5_3:4529605-4529624 Msa0792790:CDS 55.0%
! CGTGATGGCTTGCATCATGG+GGG + chr5_3:4529608-4529627 Msa0792790:CDS 55.0%
ACGCCATCTGGACAAGACTG+TGG + chr5_3:4530223-4530242 Msa0792790:CDS 55.0%
TTACCAGCACGAGGTGAGCT+TGG - chr5_3:4531133-4531152 None:intergenic 55.0%
!! GTAAGTTGGTTGACGTGGGG+TGG + chr5_3:4531553-4531572 Msa0792790:CDS 55.0%
! GGTCCGGATTGTCACTTGCT+GGG + chr5_3:4531587-4531606 Msa0792790:CDS 55.0%
CTCCTATCATGTTCCCCGAG+AGG + chr5_3:4531643-4531662 Msa0792790:CDS 55.0%
TCCCTCTCGGGGAACATGAT+AGG - chr5_3:4531648-4531667 None:intergenic 55.0%
CCACTTAGAACTCCCTCTCG+GGG - chr5_3:4531659-4531678 None:intergenic 55.0%
AAGCGATCCTGGCGGAACGA+CGG - chr5_3:4527111-4527130 None:intergenic 60.0%
TCCGCCAGGATCGCTTACTG+CGG + chr5_3:4527115-4527134 Msa0792790:CDS 60.0%
ACCGCAGTAAGCGATCCTGG+CGG - chr5_3:4527119-4527138 None:intergenic 60.0%
GAGACCGCAGTAAGCGATCC+TGG - chr5_3:4527122-4527141 None:intergenic 60.0%
GGAGCAACCAAGCGACGACA+AGG - chr5_3:4527156-4527175 None:intergenic 60.0%
CAACACAGCTGGCCGCAAAG+AGG - chr5_3:4528116-4528135 None:intergenic 60.0%
CCAGCTGTGTTGCACAGGTG+CGG + chr5_3:4528124-4528143 Msa0792790:intron 60.0%
CAGCTGTGTTGCACAGGTGC+GGG + chr5_3:4528125-4528144 Msa0792790:intron 60.0%
GTGTTGCACAGGTGCGGGTA+CGG + chr5_3:4528130-4528149 Msa0792790:intron 60.0%
ACGGTACCCGGTACAGGTAC+AGG + chr5_3:4528149-4528168 Msa0792790:intron 60.0%
ACCCGGTACAGGTACAGGTG+CGG + chr5_3:4528154-4528173 Msa0792790:intron 60.0%
ACCCGCACCTGTACCTGTAC+CGG - chr5_3:4528159-4528178 None:intergenic 60.0%
TTGGTACGGTTACGGTGCGG+CGG - chr5_3:4528677-4528696 None:intergenic 60.0%
!! CGCGGGTACTGGTACTCGTA+TGG - chr5_3:4528756-4528775 None:intergenic 60.0%
!! AACTGGCCGCCTCTGAAGCA+CGG - chr5_3:4528817-4528836 None:intergenic 60.0%
! ATGGCTTGCATCATGGGGGC+TGG + chr5_3:4529612-4529631 Msa0792790:CDS 60.0%
GTGTATTCTGCCGTGCGTGC+TGG + chr5_3:4531082-4531101 Msa0792790:CDS 60.0%
GGCAGAAGATCCAGCACGCA+CGG - chr5_3:4531095-4531114 None:intergenic 60.0%
!! GCTTGGTGGGGAAAGCACTG+CGG - chr5_3:4531116-4531135 None:intergenic 60.0%
! AGCACGAGGTGAGCTTGGTG+GGG - chr5_3:4531128-4531147 None:intergenic 60.0%
CAGCACGAGGTGAGCTTGGT+GGG - chr5_3:4531129-4531148 None:intergenic 60.0%
ACGTGGGGTGGCCTTCAGTT+TGG + chr5_3:4531565-4531584 Msa0792790:CDS 60.0%
CGTGGGGTGGCCTTCAGTTT+GGG + chr5_3:4531566-4531585 Msa0792790:CDS 60.0%
GGTGGCCTTCAGTTTGGGTC+CGG + chr5_3:4531571-4531590 Msa0792790:CDS 60.0%
! GGGTCCGGATTGTCACTTGC+TGG + chr5_3:4531586-4531605 Msa0792790:CDS 60.0%
!! CCCCGAGAGGGAGTTCTAAG+TGG + chr5_3:4531656-4531675 Msa0792790:exon 60.0%
TGCGGCCAGCTGTGTTGCAC+AGG + chr5_3:4528119-4528138 Msa0792790:intron 65.0%
CCGCACCTGTGCAACACAGC+TGG - chr5_3:4528127-4528146 None:intergenic 65.0%
ACAGGTGCGGGTACGGTACC+CGG + chr5_3:4528137-4528156 Msa0792790:intron 65.0%
CCCGCACCTGTACCTGTACC+GGG - chr5_3:4528158-4528177 None:intergenic 65.0%
CCCGGTACAGGTACAGGTGC+GGG + chr5_3:4528155-4528174 Msa0792790:intron 65.0%
GTGCGGCGGTGGTACTCTCA+GGG - chr5_3:4528663-4528682 None:intergenic 65.0%
GCCGCACCGTAACCGTACCA+AGG + chr5_3:4528676-4528695 Msa0792790:intron 65.0%
! ACCAGTACCCGCGGAGTACC+CGG + chr5_3:4528763-4528782 Msa0792790:intron 65.0%
! TACCCGCGGAGTACCCGGTA+CGG + chr5_3:4528768-4528787 Msa0792790:intron 65.0%
TACCCGTACCGGGTACTCCG+CGG - chr5_3:4528774-4528793 None:intergenic 65.0%
!! ACTGGCCGCCTCTGAAGCAC+GGG - chr5_3:4528816-4528835 None:intergenic 65.0%
CCAGCACGAGGTGAGCTTGG+TGG - chr5_3:4531130-4531149 None:intergenic 65.0%
CCACCAAGCTCACCTCGTGC+TGG + chr5_3:4531127-4531146 Msa0792790:CDS 65.0%
! CGTGCAAGCGCTGCATGCGC+AGG - chr5_3:4527068-4527087 None:intergenic 70.0%
GCATCAGCCGTCGTTCCGCC+AGG + chr5_3:4527101-4527120 Msa0792790:CDS 70.0%
GCGGGTACGGTACCCGGTAC+AGG + chr5_3:4528143-4528162 Msa0792790:intron 70.0%
GGTGCGGCGGTGGTACTCTC+AGG - chr5_3:4528664-4528683 None:intergenic 70.0%
GTACGGTTACGGTGCGGCGG+TGG - chr5_3:4528674-4528693 None:intergenic 70.0%
ACCGGGTACTCCGCGGGTAC+TGG - chr5_3:4528767-4528786 None:intergenic 70.0%
! ACCCGCGGAGTACCCGGTAC+GGG + chr5_3:4528769-4528788 Msa0792790:intron 70.0%
ACCCGTACCGGGTACTCCGC+GGG - chr5_3:4528773-4528792 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 4526785 4531964 4526785 ID=Msa0792790;Name=Msa0792790
chr5_3 mRNA 4526785 4531964 4526785 ID=Msa0792790-mRNA-1;Parent=Msa0792790;Name=Msa0792790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=243|1|1|1|1|1|6|290|410
chr5_3 exon 4526785 4527211 4526785 ID=Msa0792790-mRNA-1:exon:1759;Parent=Msa0792790-mRNA-1
chr5_3 exon 4529471 4529710 4529471 ID=Msa0792790-mRNA-1:exon:1760;Parent=Msa0792790-mRNA-1
chr5_3 exon 4529908 4530019 4529908 ID=Msa0792790-mRNA-1:exon:1761;Parent=Msa0792790-mRNA-1
chr5_3 exon 4530144 4530318 4530144 ID=Msa0792790-mRNA-1:exon:1762;Parent=Msa0792790-mRNA-1
chr5_3 exon 4530908 4531148 4530908 ID=Msa0792790-mRNA-1:exon:1763;Parent=Msa0792790-mRNA-1
chr5_3 exon 4531394 4531964 4531394 ID=Msa0792790-mRNA-1:exon:1764;Parent=Msa0792790-mRNA-1
chr5_3 five_prime_UTR 4526785 4527027 4526785 ID=Msa0792790-mRNA-1:five_prime_utr;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4527028 4527211 4527028 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4529471 4529710 4529471 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4529908 4530019 4529908 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4530144 4530318 4530144 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4530908 4531148 4530908 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 CDS 4531394 4531674 4531394 ID=Msa0792790-mRNA-1:cds;Parent=Msa0792790-mRNA-1
chr5_3 three_prime_UTR 4531675 4531964 4531675 ID=Msa0792790-mRNA-1:three_prime_utr;Parent=Msa0792790-mRNA-1
Gene Sequence

>Msa0792790

ATGTGGGCTGCTTCGTGTCTAGCGTCATGCTGCGCTTCCTGCGCATGCAGCGCTTGCACGTCCGTCGTTTCAAGCATCAGCCGTCGTTCCGCCAGGATCGCTTACTGCGGTCTCTTCGCTTTTTCCCTTGTCGTCGCTTGGTTGCTCCGTGAAGTTGCTGCTCCTCTCATGGAATCTATTCCCTGGATTAATCACTTTAAACAAACTCCAAGCCGTGAGTGGTTTGAGACTGATGCAGTTCTTCGTGTTAGCTTTGGAAACTTTCTATTTTTCACTATTCTGGCTACTATGATGGTTGGCGTCAAAACTCAGAAGGATCCTCGTGATGGCTTGCATCATGGGGGCTGGATGATGAAAGTTATCTGTTGGTTCCTTCTGGTTATCTTTATGTTTTTTCTACCGAACGAGATGATCAGCTTTTATGAAACAATATCGAAGTTTGGCTCTGGTATGTTTCTTCTTGTTCAAGTTGTGCTCTTGTTGGATTTTGTTCATCGATGGAATGACACATGGGTTGGATATGATGAGCAGTTCTGGTATGTTGCTTTATTTGTTGTTTCACTTGTCTGTTACGTGGCCACTTTTGTGTTCTCGGGTGTTCTCTTTCATTTCTTCACGCCATCTGGACAAGACTGTGGAACCAATATCTTTTTCATTTCAATGACCCTGATGCTCGCATTTGTTTTTGCCATAGTAGCTTTGCATCCTGCTGTAAATGGAAGTGTTTTGCCTGCTTCTGTAATATCATTTTATTGCATGTATCTCTGCTATAGTGCACTGGCTAGTGAACCCAGAGATTACGAGTGCAATGGTCTTCACAATCACTCCAAAGCTGTTTCCACTGGCTCTCTTACTTTGGGATTAGTCACAACAGTTCTATCTGTTGTGTATTCTGCCGTGCGTGCTGGATCTTCTGCCGCAGTGCTTTCCCCACCAAGCTCACCTCGTGCTGGGAAGCCTTTGCTTCCATTGGATGCTAAGGATGAAGAAAGTAACGAGAAAGCAAAGCCAGTTACATATTCATATGCCTTCTTCCACTTGATTTTCTCTCTTGCTAGCATGTATTCTGCAATGCTTCTGACAGGTTGGTCTACCTCTGTTGGAGAGAGTGGTAAGTTGGTTGACGTGGGGTGGCCTTCAGTTTGGGTCCGGATTGTCACTTGCTGGGCAACTGCTTTGCTATACTTATGGTCTCTCGTAGCTCCTATCATGTTCCCCGAGAGGGAGTTCTAA

Protein sequence

>Msa0792790

MWAASCLASCCASCACSACTSVVSSISRRSARIAYCGLFAFSLVVAWLLREVAAPLMESIPWINHFKQTPSREWFETDAVLRVSFGNFLFFTILATMMVGVKTQKDPRDGLHHGGWMMKVICWFLLVIFMFFLPNEMISFYETISKFGSGMFLLVQVVLLLDFVHRWNDTWVGYDEQFWYVALFVVSLVCYVATFVFSGVLFHFFTPSGQDCGTNIFFISMTLMLAFVFAIVALHPAVNGSVLPASVISFYCMYLCYSALASEPRDYECNGLHNHSKAVSTGSLTLGLVTTVLSVVYSAVRAGSSAAVLSPPSSPRAGKPLLPLDAKDEESNEKAKPVTYSYAFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIVTCWATALLYLWSLVAPIMFPEREF*