AlfalfaGEDB | Msa0140140

M. sativa cultivar zhongmu-4 / Msa0140140

KEGG: K01537
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132
PFAM: PF00122.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140140	KEH35814.1	99.407	843	5	0	1	843	1	843	0.0	1710

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140140	sp\|Q37145\|ACA1_ARATH	80.783	843	161	1	1	842	177	1019	0.0	1394

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0140140	A0A072V1D1	99.407	843	5	0	1	843	1	843	0.0	1710

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140140	Msa0198210	0.821267	4.422281e-53	-8.615850e-47
Msa0140140	Msa0207690	0.811301	7.498661e-51	-8.615850e-47
Msa0140140	Msa0242820	0.822104	2.831317e-53	-8.615850e-47
Msa0140140	Msa0287660	0.827593	1.436097e-54	-8.615850e-47
Msa0140140	Msa0353500	0.803255	3.803558e-49	-8.615850e-47
Msa0140140	Msa0381100	0.809325	2.001279e-50	-8.615850e-47
Msa0140140	Msa0382460	0.801670	8.071708e-49	-8.615850e-47
Msa0140140	Msa0430970	0.979901	5.362084e-149	-8.615850e-47
Msa0140140	Msa0447440	0.813066	3.088624e-51	-8.615850e-47
Msa0140140	Msa0476960	0.827408	1.590752e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0140140	MtrunA17_Chr3g0134771	99.407	843	5	0	1	843	177	1019	1710
Msa0140140	MtrunA17_Chr5g0401211	82.283	841	146	2	1	840	176	1014	1401
Msa0140140	MtrunA17_Chr4g0054021	79.548	841	167	2	1	840	101	937	1353
Msa0140140	MtrunA17_Chr1g0173111	67.658	841	270	2	1	840	172	1011	1176
Msa0140140	MtrunA17_Chr8g0382071	66.033	842	282	3	2	840	174	1014	1144
Msa0140140	MtrunA17_Chr4g0020551	65.415	772	263	2	1	768	106	877	1014
Msa0140140	MtrunA17_Chr8g0355421	53.983	841	385	2	1	840	166	1005	895
Msa0140140	MtrunA17_Chr4g0002331	52.839	863	376	10	1	840	227	1081	819
Msa0140140	MtrunA17_Chr2g0298871	51.736	864	385	9	1	840	214	1069	815
Msa0140140	MtrunA17_Chr6g0456201	48.611	864	408	12	1	840	155	1006	758

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0140140	AT1G27770.4	80.783	843	161	1	1	842	177	1019	1394
Msa0140140	AT1G27770.1	80.783	843	161	1	1	842	177	1019	1394
Msa0140140	AT1G27770.3	80.783	843	161	1	1	842	114	956	1393
Msa0140140	AT4G37640.1	79.929	842	165	3	1	840	175	1014	1381
Msa0140140	AT2G22950.1	80.048	842	164	3	1	840	176	1015	1372
Msa0140140	AT2G41560.1	67.378	843	270	5	1	842	172	1010	1147
Msa0140140	AT2G41560.2	67.378	843	270	5	1	842	70	908	1146
Msa0140140	AT2G41560.3	67.378	843	270	5	1	842	70	908	1146
Msa0140140	AT2G41560.4	67.378	843	270	5	1	842	70	908	1146
Msa0140140	AT3G57330.2	67.141	843	269	5	1	842	117	952	1144

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Find 240 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAAAATCCCCGGGC+TGG	0.535485	1_3:-74296816	None:intergenic
AAAAGTTGAACCGCAGTGAG+GGG	0.632663	1_3:-74299955	None:intergenic
AAAATTCATGGTGGGGTTGA+GGG	0.414334	1_3:+74296687	Msa0140140:five_prime_UTR
AAAGTCCAGCCCGGGGATTT+TGG	0.228585	1_3:+74296811	Msa0140140:five_prime_UTR
AAATGGAAAGATTGAGATTC+TGG	0.212944	1_3:+74297892	Msa0140140:CDS
AAATTACAGTTCAGGTCACG+CGG	0.653167	1_3:+74297051	Msa0140140:CDS
AAATTTGTGCTGATGAGGCA+GGG	0.619169	1_3:+74296631	Msa0140140:five_prime_UTR
AACAATTATGATTTGGAAGA+TGG	0.361448	1_3:-74300571	None:intergenic
AACATGATTATGGACACACT+TGG	0.622533	1_3:+74299985	Msa0140140:CDS
AACCACAGTTTCAAACTTAG+AGG	0.327489	1_3:-74300624	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCAAAGTGAAACTATGTAA+AGG	-	chr1_3:74294733-74294752	None:intergenic	30.0%
GCAATTAGAGCATAAATAGA+TGG	+	chr1_3:74294971-74294990	Msa0140140:five_prime_UTR	30.0%
TGTGAAACCGAAAAATTCAT+CGG	+	chr1_3:74295022-74295041	Msa0140140:five_prime_UTR	30.0%
GGAACTTCTATGTTTATCTT+AGG	+	chr1_3:74295195-74295214	Msa0140140:intron	30.0%
TGACCTCTAAATCTTTCTAA+TGG	-	chr1_3:74295365-74295384	None:intergenic	30.0%
AAGATTTAGAGGTCAATGAT+TGG	+	chr1_3:74295370-74295389	Msa0140140:intron	30.0%
TCAATGATTGGATCCAAATA+TGG	+	chr1_3:74295382-74295401	Msa0140140:intron	30.0%
GTTCTATCAAAGACCATATT+TGG	-	chr1_3:74295398-74295417	None:intergenic	30.0%
TGGTCTTTGATAGAACATTA+TGG	+	chr1_3:74295402-74295421	Msa0140140:intron	30.0%
TCTTTGATAGAACATTATGG+CGG	+	chr1_3:74295405-74295424	Msa0140140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	74294715	74301086	74294715	ID=Msa0140140;Name=Msa0140140
chr1_3	mRNA	74294715	74301086	74294715	ID=Msa0140140-mRNA-1;Parent=Msa0140140;Name=Msa0140140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=801\|1\|1\|1\|0.83\|0.85\|7\|364\|843
chr1_3	exon	74294715	74295164	74294715	ID=Msa0140140-mRNA-1:exon:25839;Parent=Msa0140140-mRNA-1
chr1_3	exon	74296435	74296489	74296435	ID=Msa0140140-mRNA-1:exon:25840;Parent=Msa0140140-mRNA-1
chr1_3	exon	74296574	74298522	74296574	ID=Msa0140140-mRNA-1:exon:25841;Parent=Msa0140140-mRNA-1
chr1_3	exon	74299110	74299268	74299110	ID=Msa0140140-mRNA-1:exon:25842;Parent=Msa0140140-mRNA-1
chr1_3	exon	74299670	74299841	74299670	ID=Msa0140140-mRNA-1:exon:25843;Parent=Msa0140140-mRNA-1
chr1_3	exon	74299947	74300245	74299947	ID=Msa0140140-mRNA-1:exon:25844;Parent=Msa0140140-mRNA-1
chr1_3	exon	74300474	74301086	74300474	ID=Msa0140140-mRNA-1:exon:25845;Parent=Msa0140140-mRNA-1
chr1_3	five_prime_UTR	74294715	74295164	74294715	ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3	five_prime_UTR	74296435	74296489	74296435	ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3	five_prime_UTR	74296574	74296869	74296574	ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3	CDS	74296870	74298522	74296870	ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3	CDS	74299110	74299268	74299110	ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3	CDS	74299670	74299841	74299670	ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3	CDS	74299947	74300245	74299947	ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3	CDS	74300474	74300722	74300474	ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3	three_prime_UTR	74300723	74301086	74300723	ID=Msa0140140-mRNA-1:three_prime_utr;Parent=Msa0140140-mRNA-1

Gene Sequence

>Msa0140140

ATGATACTTGCGGTCTGTGCTTTTGTCTCTTTAGTGGTTGGCATAATAATGGAAGGGTGGCCTAAGGGTGCACAGGATGGGATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTTGTCACTGCCACTAGTGATTACAGACAATCATTGCAGTTTAAGGATCTAGATAAAGAGAAGAAGAAAATTACAGTTCAGGTCACGCGGAATGGATATAGACAGAAAATTTCAATATATGATCTACTTCCTGGTGATATTGTCCATCTTAATATCGGAGATCAAGTCCCTGCTGATGGGCTTTTTGTGTCCGGTTTCTCTGTATGTATAAATGAATCAAGTTTGACAGGAGAAAGTGAACCAGTGAACGTCAGTGACCTTAATCCTTTTCTTCTATCTGGAACAAAAGTCCAGGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGAACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGTGGAGATGATGAAACTCCCTTGCAGGTAAAACTCAATGGCGTGGCTACCATTATTGGAAAAATAGGCCTCTTTTTCGCTGTTGTGACTTTCTCAGTGTTGGTCCAAGGGCTATTTAGCCGCAAGCTGCAAGAAGGTTCCCAATGGACATGGTCTGGTGATGATGCAATGGAAATTGTGGAATTCTTTGCTATTGCTGTTACAATTGTTGTTGTTGCTGTTCCTGAAGGTTTACCTTTAGCTGTGACATTGAGCCTTGCTTTTGCCATGAAAAAAATGATGAACGATAAGGCACTCGTCCGTCATTTGGCTGCTTGTGAGACAATGGGATCTGCTACTACTATCTGCAGTGACAAGACTGGCACGTTAACTACAAACCATATGACTGTTGTAAAAGCTTGCATTTGTGGGAAGATCAAAGAGGTAAAGAGCTCCATCGACTCTTCTGATTTCTCATCTGATCTTCCTGATTCTGCTATAGCAATTCTACTTGAATCAATATTCAACAACACCGGAGGTGAAGTGGTCAAAAATGAAAATGGAAAGATTGAGATTCTGGGATCACCAACTGAGACTGCCATCTTGGAATTTGGGCTATCACTTGGTGGTGATTTCCACAAAGAACGACAAGCATCAAAACTTGTGAAAGTTGAACCATTTAATTCTATAAAGAAGCGCATGGGGGTAGTTCTACAGCTTCCTGATGGTGGTTACAGAGCACATTGCAAGGGCGCCTCTGAAATAATTCTTGCTGCATGTGACAAATTTGTAGACTCAAATGGCAAGATTGTTCCACTTGATGAAGACTCCATCAGTCACTTGAATGATACAATCGAAAAATTTGCCAATGAAGCTCTCCGGACCCTTTGCCTTGCTTACATTGATATTCATGATGAATTTTTAGTTGGAAGTCCTATTCCTATTAATGGTTACACTTGTGTAGGAATAGTGGGTATTAAAGATCCAGTCCGTCCTGGTGTTCGAGAGTCTGTAGCCATTTGTAGGTCGGCTGGTATTACAGTTAGGATGGTTACCGGAGACAACATAAATACTGCAAAGGCGATTGCTAGAGAATGTGGAATTTTAACCGATGGTATGGCGATTGAAGGCCCGGAGTTCCGTGAAATGAGTGAGAAGGAATTGCTTGATATCATTCCAAAAATTCAGGTAATGGCTCGATCTTCACCCATGGATAAGCATACCCTAGTGAAACACTTGAGGACAACATTTGAAGAGGTTGTTGCAGTTACTGGTGATGGTACAAATGATGCACCAGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTGCTGGAACCGAGGTAGCAAAAGAAAGTGCCGACGTAATAATACTAGATGATAACTTTTCAACTATCGTCACTGTAGCTAAATGGGGCCGTTCAGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATGTTGTTGCTTTGATTGTCAATTTCACTTCTGCTTGTTTGACAGGAAATGCTCCCCTCACTGCGGTTCAACTTTTATGGGTCAACATGATTATGGACACACTTGGAGCACTTGCACTTGCCACTGAACCTCCTAATGATGAGTTGATGAAAAGAGCACCAGTTGGTAGGAAAGGAAACTTTATCAGTAACGTGATGTGGAGGAATATCACGGGGCAGTCTATATATCAATTTGTCATAATCTGGTTACTCCAGACAAGAGGAAAAACAGCTTTTCATCTTGATGGCCCGGATAGTGATCTGATATTGAATACACTCATTTTCAATTCATTTGTATTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGACATGGAGAGGATAAATGTTTTTGAAGGTATCCTAAAGAATTATGTGTTCACAGCTGTACTCACCTGCACCGCCATCTTCCAAATCATAATTGTTGAATTCTTGGGCACCTATGCCAACACATCTCCTCTAAGTTTGAAACTGTGGTTCATTAGCGTTTTCCTTGGAGTCCTTGGCATGCCAATTGGTGCAGCTTTGAAGATGATCCCTGTGGGATCTGTCTAA

Protein sequence

>Msa0140140

MILAVCAFVSLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNGYRQKISIYDLLPGDIVHLNIGDQVPADGLFVSGFSVCINESSLTGESEPVNVSDLNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLQEGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKIKEVKSSIDSSDFSSDLPDSAIAILLESIFNNTGGEVVKNENGKIEILGSPTETAILEFGLSLGGDFHKERQASKLVKVEPFNSIKKRMGVVLQLPDGGYRAHCKGASEIILAACDKFVDSNGKIVPLDEDSISHLNDTIEKFANEALRTLCLAYIDIHDEFLVGSPIPINGYTCVGIVGIKDPVRPGVRESVAICRSAGITVRMVTGDNINTAKAIARECGILTDGMAIEGPEFREMSEKELLDIIPKIQVMARSSPMDKHTLVKHLRTTFEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRAPVGRKGNFISNVMWRNITGQSIYQFVIIWLLQTRGKTAFHLDGPDSDLILNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFTAVLTCTAIFQIIIVEFLGTYANTSPLSLKLWFISVFLGVLGMPIGAALKMIPVGSV*