AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140140 MtrunA17_Chr3g0134771 99.407 843 5 0 1 843 177 1019 0.0 1710
Msa0140140 MtrunA17_Chr5g0401211 82.283 841 146 2 1 840 176 1014 0.0 1401
Msa0140140 MtrunA17_Chr4g0054021 79.548 841 167 2 1 840 101 937 0.0 1353
Msa0140140 MtrunA17_Chr1g0173111 67.658 841 270 2 1 840 172 1011 0.0 1176
Msa0140140 MtrunA17_Chr8g0382071 66.033 842 282 3 2 840 174 1014 0.0 1144
Msa0140140 MtrunA17_Chr4g0020551 65.415 772 263 2 1 768 106 877 0.0 1014
Msa0140140 MtrunA17_Chr8g0355421 53.983 841 385 2 1 840 166 1005 0.0 895
Msa0140140 MtrunA17_Chr4g0002331 52.839 863 376 10 1 840 227 1081 0.0 819
Msa0140140 MtrunA17_Chr2g0298871 51.736 864 385 9 1 840 214 1069 0.0 815
Msa0140140 MtrunA17_Chr6g0456201 48.611 864 408 12 1 840 155 1006 0.0 758
Msa0140140 MtrunA17_Chr7g0260401 48.621 870 404 14 1 840 183 1039 0.0 740
Msa0140140 MtrunA17_Chr8g0340261 47.417 542 247 8 315 840 22 541 7.13e-157 469
Msa0140140 MtrunA17_Chr8g0346461 31.454 798 445 21 2 709 74 859 5.58e-93 315
Msa0140140 MtrunA17_Chr7g0263361 32.439 783 432 22 2 700 86 855 1.39e-91 311
Msa0140140 MtrunA17_Chr2g0334231 55.369 298 124 4 1 290 208 504 4.87e-88 289
Msa0140140 MtrunA17_Chr8g0340271 51.361 294 135 3 1 286 153 446 3.01e-83 275
Msa0140140 MtrunA17_Chr3g0134951 31.774 727 407 18 66 727 128 830 3.24e-79 276
Msa0140140 MtrunA17_Chr4g0005551 25.799 876 572 23 2 840 133 967 3.71e-76 267
Msa0140140 MtrunA17_Chr5g0447521 25.524 858 571 24 2 825 168 991 2.32e-72 257
Msa0140140 MtrunA17_Chr2g0334221 45.171 321 155 6 290 596 23 336 1.05e-70 237
Msa0140140 MtrunA17_Chr2g0333721 26.594 643 383 20 19 648 88 654 1.37e-45 177
Msa0140140 MtrunA17_Chr8g0381711 25.937 667 401 18 58 696 133 734 1.41e-45 176
Msa0140140 MtrunA17_Chr3g0138931 25.938 613 362 17 65 658 135 674 9.16e-45 174
Msa0140140 MtrunA17_Chr1g0147981 25.152 660 401 20 18 658 106 691 1.73e-44 173
Msa0140140 MtrunA17_Chr2g0334201 46.341 164 87 1 678 840 1 164 2.48e-44 158
Msa0140140 MtrunA17_Chr8g0365021 24.726 639 402 18 18 648 159 726 5.71e-44 172
Msa0140140 MtrunA17_Chr1g0148031 24.733 655 408 18 19 658 90 674 5.71e-44 172
Msa0140140 MtrunA17_Chr2g0298031 24.427 655 407 18 18 655 94 677 6.77e-44 171
Msa0140140 MtrunA17_Chr4g0059961 25.424 590 366 17 65 648 139 660 1.17e-41 164
Msa0140140 MtrunA17_Chr4g0072131 24.342 608 372 16 65 655 138 674 2.18e-41 164
Msa0140140 MtrunA17_Chr2g0304941 24.382 607 373 18 65 655 136 672 7.05e-41 162
Msa0140140 MtrunA17_Chr4g0065481 24.468 658 400 18 19 655 91 672 1.71e-40 161
Msa0140140 MtrunA17_Chr6g0452721 24.704 591 369 15 65 648 137 658 6.26e-40 159
Msa0140140 MtrunA17_Chr8g0335291 24.788 589 370 16 65 648 143 663 7.59e-38 152
Msa0140140 MtrunA17_Chr7g0276551 26.887 424 258 10 229 648 46 421 1.25e-35 144
Msa0140140 MtrunA17_Chr2g0297051 24.437 577 333 14 82 653 493 971 2.03e-29 126
Msa0140140 MtrunA17_Chr5g0397621 24.258 573 320 16 84 651 378 841 3.79e-29 125
Msa0140140 MtrunA17_Chr8g0339181 27.178 574 305 19 84 651 441 907 7.09e-28 121
Msa0140140 MtrunA17_Chr8g0374391 32.955 176 90 3 476 651 36 183 1.25e-21 95.1
Msa0140140 MtrunA17_Chr8g0374331 32.955 176 90 3 476 651 43 190 1.39e-21 95.1
Msa0140140 MtrunA17_Chr3g0131151 23.767 669 344 25 64 622 257 869 3.43e-20 96.7
Msa0140140 MtrunA17_Chr8g0363911 25.770 357 169 11 254 528 400 742 9.57e-17 85.5
Msa0140140 MtrunA17_Chr4g0052521 28.788 198 112 4 456 653 771 939 4.14e-16 83.2
Msa0140140 MtrunA17_Chr4g0020561 48.571 70 36 0 771 840 1 70 8.05e-14 67.8
Msa0140140 MtrunA17_Chr4g0071991 30.625 160 85 3 471 630 512 645 2.40e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140140 AT1G27770.4 80.783 843 161 1 1 842 177 1019 0.0 1394
Msa0140140 AT1G27770.1 80.783 843 161 1 1 842 177 1019 0.0 1394
Msa0140140 AT1G27770.3 80.783 843 161 1 1 842 114 956 0.0 1393
Msa0140140 AT4G37640.1 79.929 842 165 3 1 840 175 1014 0.0 1381
Msa0140140 AT2G22950.1 80.048 842 164 3 1 840 176 1015 0.0 1372
Msa0140140 AT2G41560.1 67.378 843 270 5 1 842 172 1010 0.0 1147
Msa0140140 AT2G41560.2 67.378 843 270 5 1 842 70 908 0.0 1146
Msa0140140 AT2G41560.3 67.378 843 270 5 1 842 70 908 0.0 1146
Msa0140140 AT2G41560.4 67.378 843 270 5 1 842 70 908 0.0 1146
Msa0140140 AT3G57330.2 67.141 843 269 5 1 842 117 952 0.0 1144
Msa0140140 AT3G57330.1 67.141 843 269 5 1 842 172 1007 0.0 1143
Msa0140140 AT4G29900.1 53.944 862 368 10 1 840 195 1049 0.0 858
Msa0140140 AT4G29900.2 53.944 862 368 10 1 840 195 1049 0.0 858
Msa0140140 AT5G57110.1 51.736 864 382 9 1 840 195 1047 0.0 821
Msa0140140 AT5G57110.3 51.736 864 382 9 1 840 195 1047 0.0 821
Msa0140140 AT5G57110.2 51.736 864 382 9 1 840 195 1047 0.0 821
Msa0140140 AT3G21180.1 51.968 864 383 9 1 840 209 1064 0.0 795
Msa0140140 AT1G27770.2 69.217 549 158 5 1 547 177 716 0.0 725
Msa0140140 AT1G27770.2 84.887 311 47 0 532 842 635 945 0.0 557
Msa0140140 AT3G63380.1 47.836 855 416 9 1 840 167 1006 0.0 715
Msa0140140 AT3G22910.1 47.497 859 414 12 1 840 162 1002 0.0 705
Msa0140140 AT5G53010.1 38.242 842 437 22 22 827 238 1032 3.87e-136 431
Msa0140140 AT4G00900.2 32.357 785 438 19 2 700 69 846 5.28e-93 315
Msa0140140 AT4G00900.1 32.357 785 438 19 2 700 69 846 5.28e-93 315
Msa0140140 AT1G07670.2 34.916 716 384 23 57 700 145 850 5.90e-93 315
Msa0140140 AT1G07670.1 34.916 716 384 23 57 700 145 850 5.90e-93 315
Msa0140140 AT1G07810.1 34.497 716 387 24 57 700 145 850 1.03e-91 312
Msa0140140 AT5G53010.2 40.073 549 300 15 22 552 238 775 5.41e-91 304
Msa0140140 AT1G10130.1 32.615 696 395 16 66 700 128 810 2.43e-83 288
Msa0140140 AT1G80660.2 25.632 593 361 16 65 648 9 530 1.47e-46 179
Msa0140140 AT1G80660.3 25.628 597 356 16 65 648 138 659 1.48e-46 180
Msa0140140 AT1G80660.4 25.628 597 356 16 65 648 138 659 1.57e-46 180
Msa0140140 AT1G80660.1 25.628 597 356 16 65 648 138 659 2.19e-46 179
Msa0140140 AT1G17260.1 25.574 610 362 15 65 660 141 672 4.23e-45 176
Msa0140140 AT2G07560.1 25.980 612 356 21 65 655 136 671 3.64e-44 172
Msa0140140 AT3G60330.4 25.346 651 401 19 19 660 91 665 9.77e-43 168
Msa0140140 AT3G60330.3 25.346 651 401 19 19 660 91 665 9.77e-43 168
Msa0140140 AT5G57350.4 24.284 663 395 16 19 655 89 670 1.45e-42 167
Msa0140140 AT5G57350.2 24.284 663 395 16 19 655 89 670 1.45e-42 167
Msa0140140 AT5G57350.1 24.284 663 395 16 19 655 89 670 1.45e-42 167
Msa0140140 AT3G60330.2 25.192 651 402 19 19 660 91 665 2.00e-42 167
Msa0140140 AT3G60330.1 25.192 651 402 19 19 660 91 665 2.00e-42 167
Msa0140140 AT2G24520.3 24.809 653 404 19 19 655 70 651 2.68e-41 164
Msa0140140 AT2G24520.1 24.809 653 404 19 19 655 70 651 2.68e-41 164
Msa0140140 AT2G24520.2 24.655 653 405 18 19 655 133 714 2.73e-41 164
Msa0140140 AT5G62670.1 25.169 592 365 16 65 648 137 658 4.05e-40 160
Msa0140140 AT2G18960.3 23.764 627 391 17 65 679 69 620 6.90e-40 159
Msa0140140 AT2G18960.2 23.764 627 391 17 65 679 69 620 6.90e-40 159
Msa0140140 AT2G18960.1 23.764 627 391 17 65 679 133 684 8.15e-40 159
Msa0140140 AT3G47950.1 24.958 593 365 16 65 648 141 662 2.00e-39 158
Msa0140140 AT3G47950.2 24.958 593 365 16 65 648 141 662 2.00e-39 158
Msa0140140 AT3G42640.1 24.959 613 368 20 65 658 136 675 3.36e-39 157
Msa0140140 AT4G30190.1 23.370 629 391 16 65 679 133 684 7.23e-39 156
Msa0140140 AT4G30190.2 22.331 712 422 20 18 679 87 717 1.85e-35 145
Msa0140140 AT5G57350.3 24.374 439 273 9 229 655 17 408 2.25e-32 134
Msa0140140 AT2G24520.4 23.864 440 274 10 229 655 17 408 1.92e-30 129
Msa0140140 AT5G44790.1 25.190 659 375 22 13 651 386 946 3.59e-30 129
Msa0140140 AT5G23630.1 24.645 633 321 25 63 598 256 829 3.91e-20 97.1
Msa0140140 AT4G30110.1 28.910 211 123 4 447 655 481 666 6.15e-14 76.6
Msa0140140 AT4G30110.2 28.910 211 123 4 447 655 481 666 6.15e-14 76.6
Msa0140140 AT4G11730.1 21.519 395 239 10 65 455 134 461 5.50e-12 70.1
Msa0140140 AT2G19110.2 27.174 184 108 4 472 655 518 675 9.82e-12 69.7
Msa0140140 AT2G19110.3 27.174 184 108 4 472 655 518 675 9.82e-12 69.7
Msa0140140 AT2G19110.1 27.174 184 108 4 472 655 518 675 9.82e-12 69.7

Find 240 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACAATCATTGCAGTTTA+AGG 0.103972 1_3:+74297007 Msa0140140:CDS
GAGACTGCCATCTTGGAATT+TGG 0.130934 1_3:+74297926 Msa0140140:CDS
AAATGGAAAGATTGAGATTC+TGG 0.212944 1_3:+74297892 Msa0140140:CDS
TTTATGGGTCAACATGATTA+TGG 0.213842 1_3:+74299975 Msa0140140:CDS
GGAAGTCCTATTCCTATTAA+TGG 0.218596 1_3:+74298262 Msa0140140:CDS
TAGCTTCAGCTTCAAATCTT+TGG 0.219761 1_3:-74295126 None:intergenic
AATCATAATTGTTGAATTCT+TGG 0.221827 1_3:+74300581 Msa0140140:CDS
AAAGTCCAGCCCGGGGATTT+TGG 0.228585 1_3:+74296811 Msa0140140:five_prime_UTR
CTATCGTCACTGTAGCTAAA+TGG 0.228891 1_3:+74299719 Msa0140140:CDS
CGCTTCTTTATAGAATTAAA+TGG 0.234218 1_3:-74298010 None:intergenic
AATGGCGTGGCTACCATTAT+TGG 0.243299 1_3:+74297392 Msa0140140:CDS
AATCGGAGAAAAGAAATTTA+TGG 0.256534 1_3:+74296771 Msa0140140:five_prime_UTR
GCACTTCATGAAGCAGATAT+TGG 0.275093 1_3:+74299218 Msa0140140:CDS
TAAAATAAATTCAGACAATT+AGG 0.279757 1_3:+74300720 Msa0140140:exon
CAGACAATTAGGTACATTCT+TGG 0.302708 1_3:+74300731 Msa0140140:three_prime_UTR
ACACAAGTGTAACCATTAAT+AGG 0.310341 1_3:-74298274 None:intergenic
CTGTGAACACATAATTCTTT+AGG 0.314922 1_3:-74300530 None:intergenic
AGAATTCAACAATTATGATT+TGG 0.325770 1_3:-74300578 None:intergenic
AACCACAGTTTCAAACTTAG+AGG 0.327489 1_3:-74300624 None:intergenic
TTTAGTGGTTGGCATAATAA+TGG 0.328547 1_3:+74296899 Msa0140140:CDS
TATATCAATTTGTCATAATC+TGG 0.328628 1_3:+74300124 Msa0140140:CDS
CTAAATTTGGTATTTGTTGC+TGG 0.329669 1_3:+74300873 Msa0140140:three_prime_UTR
GAAGAGGTTGTTGCAGTTAC+TGG 0.330933 1_3:+74299173 Msa0140140:CDS
GGGCTTGCAATGGGCATTGC+TGG 0.332868 1_3:+74299239 Msa0140140:CDS
TCAATATATGATCTACTTCC+TGG 0.338483 1_3:+74297095 Msa0140140:CDS
AACTGAGTAGAGACTAAATT+TGG 0.350202 1_3:+74300860 Msa0140140:three_prime_UTR
ATCATAATTGTTGAATTCTT+GGG 0.355823 1_3:+74300582 Msa0140140:CDS
GCGATGTATATTATATGAAC+TGG 0.361261 1_3:+74300947 Msa0140140:three_prime_UTR
AACAATTATGATTTGGAAGA+TGG 0.361448 1_3:-74300571 None:intergenic
AGACTGCCATCTTGGAATTT+GGG 0.362502 1_3:+74297927 Msa0140140:CDS
CACTTCATGAAGCAGATATT+GGG 0.363780 1_3:+74299219 Msa0140140:CDS
TAAGGCACTCGTCCGTCATT+TGG 0.363836 1_3:+74297643 Msa0140140:CDS
TATCGTCACTGTAGCTAAAT+GGG 0.371973 1_3:+74299720 Msa0140140:CDS
GAAGAAGAAAATTACAGTTC+AGG 0.373480 1_3:+74297043 Msa0140140:CDS
CAGATAGAAGAAAAGGATTA+AGG 0.380842 1_3:-74297241 None:intergenic
AGTTACTTGAATGAGAATTT+CGG 0.382977 1_3:+74294996 Msa0140140:five_prime_UTR
AGAGATGGAGGAAGCTTTGT+TGG 0.385667 1_3:+74295057 Msa0140140:five_prime_UTR
TTCACTTCTGCTTGTTTGAC+AGG 0.389146 1_3:+74299820 Msa0140140:CDS
ACCAACTGAGACTGCCATCT+TGG 0.399147 1_3:+74297919 Msa0140140:CDS
CACTAGGGTATGCTTATCCA+TGG 0.400728 1_3:-74299129 None:intergenic
GATATTGTCCATCTTAATAT+CGG 0.403549 1_3:+74297119 Msa0140140:CDS
GAGAGTCTGTAGCCATTTGT+AGG 0.407489 1_3:+74298338 Msa0140140:CDS
AAGCTATAGACGCTCTAATC+AGG 0.408886 1_3:+74295143 Msa0140140:five_prime_UTR
CAATTCATTTGTATTCTGTC+AGG 0.411644 1_3:+74300224 Msa0140140:CDS
AAAATTCATGGTGGGGTTGA+GGG 0.414334 1_3:+74296687 Msa0140140:five_prime_UTR
GCAATTAGAGCATAAATAGA+TGG 0.415276 1_3:+74294971 Msa0140140:five_prime_UTR
CACTCATTTCACGGAACTCC+GGG 0.415424 1_3:-74298465 None:intergenic
AGAATTGCTATAGCAGAATC+AGG 0.416782 1_3:-74297821 None:intergenic
TTCAATATCAGATCACTATC+CGG 0.418969 1_3:-74300189 None:intergenic
TTTGTTCCAGATAGAAGAAA+AGG 0.425832 1_3:-74297248 None:intergenic
AAGTTTCCTTTCCTACCAAC+TGG 0.427236 1_3:-74300060 None:intergenic
TGCAGTATTTATGTTGTCTC+CGG 0.427260 1_3:-74298389 None:intergenic
ACTTTCTCAGTGTTGGTCCA+AGG 0.428486 1_3:+74297443 Msa0140140:CDS
GAAAATTCATGGTGGGGTTG+AGG 0.433201 1_3:+74296686 Msa0140140:five_prime_UTR
CAACAACATTTACAGTTAGC+TGG 0.435190 1_3:-74299783 None:intergenic
TAAATTTGAGAAACTGTAGA+TGG 0.435212 1_3:-74301068 None:intergenic
AAGGGTCCGGAGAGCTTCAT+TGG 0.436598 1_3:-74298200 None:intergenic
GGAGTCCTTGGCATGCCAAT+TGG 0.436941 1_3:+74300663 Msa0140140:CDS
ACCGATGGTATGGCGATTGA+AGG 0.438951 1_3:+74298442 Msa0140140:CDS
TTGATGCTTGTCGTTCTTTG+TGG 0.443412 1_3:-74297970 None:intergenic
ATTACAGTTAGGATGGTTAC+CGG 0.444569 1_3:+74298370 Msa0140140:CDS
ATCTTCAAAGCTGCACCAAT+TGG 0.446311 1_3:-74300678 None:intergenic
ATTCCTTCTCACTCATTTCA+CGG 0.447353 1_3:-74298474 None:intergenic
AGATGATGAAACTCCCTTGC+AGG 0.449229 1_3:+74297361 Msa0140140:CDS
TGTTGTGACTTTCTCAGTGT+TGG 0.449710 1_3:+74297436 Msa0140140:CDS
TGGCCTAAGGGTGCACAGGA+TGG 0.454989 1_3:+74296927 Msa0140140:CDS
ATTTATACATACAGAGAAAC+CGG 0.455091 1_3:-74297174 None:intergenic
ATTTATCCTCTCCATGTCTC+TGG 0.457311 1_3:-74300493 None:intergenic
CTGTTCTCACATGAAAATCA+AGG 0.459952 1_3:+74300761 Msa0140140:three_prime_UTR
TCTCGAACACCAGGACGGAC+TGG 0.464005 1_3:-74298319 None:intergenic
TTGGAATTTGGGCTATCACT+TGG 0.464467 1_3:+74297938 Msa0140140:CDS
TCAATTCCTGTGTCAACAAT+GGG 0.464722 1_3:+74296724 Msa0140140:five_prime_UTR
TCACTCATTTCACGGAACTC+CGG 0.466465 1_3:-74298466 None:intergenic
GTGTAACCATTAATAGGAAT+AGG 0.467917 1_3:-74298268 None:intergenic
GAATTTGGGCTATCACTTGG+TGG 0.472359 1_3:+74297941 Msa0140140:CDS
CCTGCAGCTTTAACTTCCTC+TGG 0.474934 1_3:-74296603 None:intergenic
GACAAATTTGTAGACTCAAA+TGG 0.475551 1_3:+74298115 Msa0140140:CDS
GGTTCCCAATGGACATGGTC+TGG 0.475865 1_3:+74297491 Msa0140140:CDS
CTTTCTCAGTGTTGGTCCAA+GGG 0.478827 1_3:+74297444 Msa0140140:CDS
GTGAAGAAGTTGAAAATTCA+TGG 0.478970 1_3:+74296675 Msa0140140:five_prime_UTR
AGGCTCAATGTCACAGCTAA+AGG 0.479225 1_3:-74297590 None:intergenic
GGCCTAAGGGTGCACAGGAT+GGG 0.479350 1_3:+74296928 Msa0140140:CDS
AACCCAGTGGGGTAAACTAA+TGG 0.480790 1_3:+74297319 Msa0140140:CDS
GCAGATATTGGGCTTGCAAT+GGG 0.481740 1_3:+74299230 Msa0140140:CDS
ATCACCAGACCATGTCCATT+GGG 0.482017 1_3:-74297495 None:intergenic
CTCAATTCCTGTGTCAACAA+TGG 0.482527 1_3:+74296723 Msa0140140:five_prime_UTR
TGGTATGGCGATTGAAGGCC+CGG 0.482546 1_3:+74298447 Msa0140140:CDS
GAGATGGAGGAAGCTTTGTT+GGG 0.482618 1_3:+74295058 Msa0140140:five_prime_UTR
TAGCCATTAGTTTACCCCAC+TGG 0.484249 1_3:-74297322 None:intergenic
CCAGAGGAAGTTAAAGCTGC+AGG 0.485917 1_3:+74296603 Msa0140140:five_prime_UTR
TTAAGGTCACTGACGTTCAC+TGG 0.487193 1_3:-74297224 None:intergenic
TTGTTAAGAATCGTAAAAGA+AGG 0.488378 1_3:+74295081 Msa0140140:five_prime_UTR
GAAATTTGTGCTGATGAGGC+AGG 0.489702 1_3:+74296630 Msa0140140:five_prime_UTR
AATGGAAAGATTGAGATTCT+GGG 0.489798 1_3:+74297893 Msa0140140:CDS
TGTAAGCAAGGCAAAGGGTC+CGG 0.491855 1_3:-74298213 None:intergenic
GGTCGGCTGGTATTACAGTT+AGG 0.492192 1_3:+74298359 Msa0140140:CDS
CATCCGAGCCTTTACTGAAT+CGG 0.492608 1_3:+74296754 Msa0140140:five_prime_UTR
CATCACCAGACCATGTCCAT+TGG 0.493492 1_3:-74297496 None:intergenic
TTACACTTGTGTAGGAATAG+TGG 0.497674 1_3:+74298285 Msa0140140:CDS
GAAATTCAGAGTTGCGGTGT+TGG 0.507524 1_3:+74296437 Msa0140140:five_prime_UTR
TCAATATCAGATCACTATCC+GGG 0.508159 1_3:-74300188 None:intergenic
ATAAATGAATCAAGTTTGAC+AGG 0.509890 1_3:+74297191 Msa0140140:CDS
TGAGAAATCAGAAGAGTCGA+TGG 0.510967 1_3:-74297789 None:intergenic
CCCTTGCAGGTAAAACTCAA+TGG 0.515185 1_3:+74297374 Msa0140140:CDS
TTGTAAAAGCTTGCATTTGT+GGG 0.516369 1_3:+74297744 Msa0140140:CDS
ACAGCTAAAGGTAAACCTTC+AGG 0.516985 1_3:-74297578 None:intergenic
AGCAGATATTGGGCTTGCAA+TGG 0.517774 1_3:+74299229 Msa0140140:CDS
ATATCTGCTTCATGAAGTGC+TGG 0.518967 1_3:-74299215 None:intergenic
AGCCATTAGTTTACCCCACT+GGG 0.521590 1_3:-74297321 None:intergenic
ACAGTTCAGGTCACGCGGAA+TGG 0.524389 1_3:+74297056 Msa0140140:CDS
GCATCTTGCATGATCCATCC+TGG 0.524532 1_3:-74297274 None:intergenic
GGAGATCAAGTCCCTGCTGA+TGG 0.524767 1_3:+74297140 Msa0140140:CDS
AGGGTGGCCTAAGGGTGCAC+AGG 0.525077 1_3:+74296923 Msa0140140:CDS
GGGAACCTTCTTGCAGCTTG+CGG 0.525729 1_3:-74297475 None:intergenic
CGGAAGAAGCACTTCAGAGA+TGG 0.526799 1_3:+74295042 Msa0140140:five_prime_UTR
GTAGCCATTTGTAGGTCGGC+TGG 0.527651 1_3:+74298346 Msa0140140:CDS
AATAATGGAAGGGTGGCCTA+AGG 0.528876 1_3:+74296914 Msa0140140:CDS
TTGTCCTCAAGTGTTTCACT+AGG 0.531061 1_3:-74299145 None:intergenic
GTTGTAAAAGCTTGCATTTG+TGG 0.531134 1_3:+74297743 Msa0140140:CDS
TTTAGCCGCAAGCTGCAAGA+AGG 0.531798 1_3:+74297470 Msa0140140:CDS
GTTGTTGTTGCTGTTCCTGA+AGG 0.532165 1_3:+74297563 Msa0140140:CDS
CTTGAGGACAACATTTGAAG+AGG 0.532340 1_3:+74299157 Msa0140140:CDS
TGTGCTCTGTAACCACCATC+AGG 0.532677 1_3:-74298055 None:intergenic
GATTTGGAAGATGGCGGTGC+AGG 0.533227 1_3:-74300562 None:intergenic
ATTAATGGTTACACTTGTGT+AGG 0.534072 1_3:+74298277 Msa0140140:CDS
AAAACCCAAAATCCCCGGGC+TGG 0.535485 1_3:-74296816 None:intergenic
TTGGCTGCTTGTGAGACAAT+GGG 0.535940 1_3:+74297662 Msa0140140:CDS
GAGGCAGGGACAATTGTTGA+TGG 0.536587 1_3:+74296645 Msa0140140:five_prime_UTR
GTGGTTGGCATAATAATGGA+AGG 0.536833 1_3:+74296903 Msa0140140:CDS
TACACTTGTGTAGGAATAGT+GGG 0.536929 1_3:+74298286 Msa0140140:CDS
AATTCTATAAAGAAGCGCAT+GGG 0.540245 1_3:+74298016 Msa0140140:CDS
CTTGATCTCCGATATTAAGA+TGG 0.540281 1_3:-74297127 None:intergenic
GTCAAAGTGAAACTATGTAA+AGG 0.540997 1_3:-74294730 None:intergenic
TGTATCATTCAAGTGACTGA+TGG 0.541682 1_3:-74298164 None:intergenic
AATACCAGCCGACCTACAAA+TGG 0.542567 1_3:-74298350 None:intergenic
TATCAATGTAAGCAAGGCAA+AGG 0.543394 1_3:-74298219 None:intergenic
AGAGCACCAGTTGGTAGGAA+AGG 0.544242 1_3:+74300054 Msa0140140:CDS
TAAAAGTTGAACCGCAGTGA+GGG 0.544308 1_3:-74299956 None:intergenic
TTCATCAACTCATCATTAGG+AGG 0.544411 1_3:-74300030 None:intergenic
CAAACTTAGAGGAGATGTGT+TGG 0.544815 1_3:-74300613 None:intergenic
GTTCTACAGCTTCCTGATGG+TGG 0.545715 1_3:+74298043 Msa0140140:CDS
AAGGGTGCACAGGATGGGAT+TGG 0.546416 1_3:+74296933 Msa0140140:CDS
AGAAGTTGAAAATTCATGGT+GGG 0.547357 1_3:+74296679 Msa0140140:five_prime_UTR
GTAGTTCTACAGCTTCCTGA+TGG 0.548200 1_3:+74298040 Msa0140140:CDS
GAGATCAAGTCCCTGCTGAT+GGG 0.548664 1_3:+74297141 Msa0140140:CDS
GCTTGCGGCTAAATAGCCCT+TGG 0.550162 1_3:-74297460 None:intergenic
ATTCACTGAAAGTCCAGCCC+GGG 0.551795 1_3:+74296803 Msa0140140:five_prime_UTR
GTCTGTAGCCATTTGTAGGT+CGG 0.558865 1_3:+74298342 Msa0140140:CDS
ATTAAAGATCCAGTCCGTCC+TGG 0.559454 1_3:+74298310 Msa0140140:CDS
CATGAATATCAATGTAAGCA+AGG 0.559724 1_3:-74298225 None:intergenic
GCCTTCAATCGCCATACCAT+CGG 0.561530 1_3:-74298443 None:intergenic
TAATTCTATAAAGAAGCGCA+TGG 0.564714 1_3:+74298015 Msa0140140:CDS
AAGATGCTTGTGACTACTGT+TGG 0.565888 1_3:+74297290 Msa0140140:CDS
ATCAATGTAAGCAAGGCAAA+GGG 0.567138 1_3:-74298218 None:intergenic
GGCTGGTATTACAGTTAGGA+TGG 0.567797 1_3:+74298363 Msa0140140:CDS
TCTCCGATTCAGTAAAGGCT+CGG 0.568788 1_3:-74296757 None:intergenic
TGGTTACAGAGCACATTGCA+AGG 0.571260 1_3:+74298063 Msa0140140:CDS
AATTCACTGAAAGTCCAGCC+CGG 0.571576 1_3:+74296802 Msa0140140:five_prime_UTR
GCTACAGACTCTCGAACACC+AGG 0.572194 1_3:-74298328 None:intergenic
CAACAACACCGGAGGTGAAG+TGG 0.573382 1_3:+74297859 Msa0140140:CDS
CTCCTCTAAGTTTGAAACTG+TGG 0.574054 1_3:+74300622 Msa0140140:CDS
ACTATCTGCAGTGACAAGAC+TGG 0.574111 1_3:+74297695 Msa0140140:CDS
CGATGTATATTATATGAACT+GGG 0.574659 1_3:+74300948 Msa0140140:three_prime_UTR
GACACAGGAATTGAGTTTGT+CGG 0.578382 1_3:-74296715 None:intergenic
AATTTGCCAATGAAGCTCTC+CGG 0.579182 1_3:+74298194 Msa0140140:CDS
TCTATCTGGAACAAAAGTCC+AGG 0.579192 1_3:+74297256 Msa0140140:CDS
TGAGATCAGTTCCAGAGACA+TGG 0.579474 1_3:+74300482 Msa0140140:CDS
TTGGCATGCCAAGGACTCCA+AGG 0.579534 1_3:-74300659 None:intergenic
TTTGGCTGCTTGTGAGACAA+TGG 0.584639 1_3:+74297661 Msa0140140:CDS
TCCAAGATGGCAGTCTCAGT+TGG 0.585699 1_3:-74297920 None:intergenic
TAGAGGAGATGTGTTGGCAT+AGG 0.587359 1_3:-74300607 None:intergenic
ATTCTATAAAGAAGCGCATG+GGG 0.587913 1_3:+74298017 Msa0140140:CDS
AAGGCGATTGCTAGAGAATG+TGG 0.588166 1_3:+74298412 Msa0140140:CDS
GTGATGTGGAGGAATATCAC+GGG 0.590403 1_3:+74300093 Msa0140140:CDS
TGATGATGCAATGGAAATTG+TGG 0.591363 1_3:+74297514 Msa0140140:CDS
GCTGCACTTCAGTTTATCCA+TGG 0.592939 1_3:+74296468 Msa0140140:five_prime_UTR
ACTTTATCAGTAACGTGATG+TGG 0.593990 1_3:+74300079 Msa0140140:CDS
TCTCACAAGCAGCCAAATGA+CGG 0.594170 1_3:-74297655 None:intergenic
AAGAAGCACTTCAGAGATGG+AGG 0.596398 1_3:+74295045 Msa0140140:five_prime_UTR
ATCATCTAGTATTATTACGT+CGG 0.598204 1_3:-74299686 None:intergenic
CTAATGGCTACTCTAAGTGA+AGG 0.600766 1_3:+74297335 Msa0140140:CDS
CTCATCATTAGGAGGTTCAG+TGG 0.601530 1_3:-74300022 None:intergenic
ATGGTCTGGTGATGATGCAA+TGG 0.601909 1_3:+74297505 Msa0140140:CDS
GTTGTTGCAGTTACTGGTGA+TGG 0.601934 1_3:+74299179 Msa0140140:CDS
CTGCACCAATTGGCATGCCA+AGG 0.603179 1_3:-74300668 None:intergenic
TGAAAAGAGCACCAGTTGGT+AGG 0.603878 1_3:+74300049 Msa0140140:CDS
TGATATCCCATTGTTGACAC+AGG 0.604868 1_3:-74296730 None:intergenic
ACTAGGGTATGCTTATCCAT+GGG 0.605184 1_3:-74299128 None:intergenic
CGTGATGTGGAGGAATATCA+CGG 0.606398 1_3:+74300092 Msa0140140:CDS
ATAATGGAAGGGTGGCCTAA+GGG 0.606626 1_3:+74296915 Msa0140140:CDS
ATGGCTACTCTAAGTGAAGG+TGG 0.609062 1_3:+74297338 Msa0140140:CDS
AAGAAGGTTCCCAATGGACA+TGG 0.609528 1_3:+74297486 Msa0140140:CDS
ATCCCATCCTGTGCACCCTT+AGG 0.610374 1_3:-74296930 None:intergenic
CTGATGGAGTCTTCATCAAG+TGG 0.611221 1_3:-74298148 None:intergenic
TGTTGGAATGAGAACCCAGT+GGG 0.612543 1_3:+74297307 Msa0140140:CDS
TGATAGCCCAAATTCCAAGA+TGG 0.613677 1_3:-74297933 None:intergenic
AATGGCTCGATCTTCACCCA+TGG 0.614750 1_3:+74299112 Msa0140140:CDS
GTTCCGTGAAATGAGTGAGA+AGG 0.615468 1_3:+74298471 Msa0140140:CDS
TCTGGAACAAAAGTCCAGGA+TGG 0.616165 1_3:+74297260 Msa0140140:CDS
GTATGTTTATGTAGACTGAA+CGG 0.617413 1_3:-74299744 None:intergenic
TGTCCTCAAGTGTTTCACTA+GGG 0.617739 1_3:-74299144 None:intergenic
AAATTTGTGCTGATGAGGCA+GGG 0.619169 1_3:+74296631 Msa0140140:five_prime_UTR
ATCTGGTTACTCCAGACAAG+AGG 0.619802 1_3:+74300141 Msa0140140:CDS
AACATGATTATGGACACACT+TGG 0.622533 1_3:+74299985 Msa0140140:CDS
GAAGTTGAAAATTCATGGTG+GGG 0.622656 1_3:+74296680 Msa0140140:five_prime_UTR
AATGGGCATTGCTGGAACCG+AGG 0.623555 1_3:+74299247 Msa0140140:CDS
AGACAACATAAATACTGCAA+AGG 0.624901 1_3:+74298393 Msa0140140:CDS
AGCTGCAAGAAGGTTCCCAA+TGG 0.626199 1_3:+74297480 Msa0140140:CDS
TGATTGTCTGTAATCACTAG+TGG 0.628003 1_3:-74296994 None:intergenic
GTAGGAGAAATTCAGAGTTG+CGG 0.630233 1_3:+74296431 Msa0140140:intron
AAAAGTTGAACCGCAGTGAG+GGG 0.632663 1_3:-74299955 None:intergenic
TGCAGCAAGAATTATTTCAG+AGG 0.634883 1_3:-74298089 None:intergenic
TCAGTTCCAGAGACATGGAG+AGG 0.640393 1_3:+74300487 Msa0140140:CDS
GAATCAATATTCAACAACAC+CGG 0.643104 1_3:+74297848 Msa0140140:CDS
AATTATGATTTGGAAGATGG+CGG 0.648036 1_3:-74300568 None:intergenic
GCAGGTAAAACTCAATGGCG+TGG 0.648822 1_3:+74297379 Msa0140140:CDS
TACAACTCTTATGATACTTG+CGG 0.650286 1_3:+74296860 Msa0140140:exon
AAATTACAGTTCAGGTCACG+CGG 0.653167 1_3:+74297051 Msa0140140:CDS
AAGCGAGTACAGAGTACCAG+AGG 0.656350 1_3:+74296587 Msa0140140:five_prime_UTR
GGTTACAGAGCACATTGCAA+GGG 0.658013 1_3:+74298064 Msa0140140:CDS
ATACCCTAGTGAAACACTTG+AGG 0.660631 1_3:+74299141 Msa0140140:CDS
TGGTTGGCATAATAATGGAA+GGG 0.660640 1_3:+74296904 Msa0140140:CDS
TTAAGATGGACAATATCACC+AGG 0.672667 1_3:-74297113 None:intergenic
TTGGCATAATAATGGAAGGG+TGG 0.673229 1_3:+74296907 Msa0140140:CDS
TTGATGAAAAGAGCACCAGT+TGG 0.674937 1_3:+74300045 Msa0140140:CDS
ATCGTCACTGTAGCTAAATG+GGG 0.675315 1_3:+74299721 Msa0140140:CDS
TTATCAGTAACGTGATGTGG+AGG 0.681192 1_3:+74300082 Msa0140140:CDS
GCTTTGAAGATGATCCCTGT+GGG 0.689104 1_3:+74300690 Msa0140140:CDS
AAGAAGTTGAAAATTCATGG+TGG 0.690167 1_3:+74296678 Msa0140140:five_prime_UTR
CAGACTCTCGAACACCAGGA+CGG 0.694389 1_3:-74298324 None:intergenic
TTCACTGAAAGTCCAGCCCG+GGG 0.697317 1_3:+74296804 Msa0140140:five_prime_UTR
ATAAAAGTTGAACCGCAGTG+AGG 0.699134 1_3:-74299957 None:intergenic
TCAATATTCAACAACACCGG+AGG 0.705540 1_3:+74297851 Msa0140140:CDS
CATTTGTGGGAAGATCAAAG+AGG 0.719442 1_3:+74297757 Msa0140140:CDS
AGCTTTGAAGATGATCCCTG+TGG 0.728542 1_3:+74300689 Msa0140140:CDS
TTCTATAAAGAAGCGCATGG+GGG 0.729168 1_3:+74298018 Msa0140140:CDS
AGGAAATGCTCCCCTCACTG+CGG 0.742396 1_3:+74299945 Msa0140140:intron
CTGTTGGAATGAGAACCCAG+TGG 0.747284 1_3:+74297306 Msa0140140:CDS
TGATGTGGAGGAATATCACG+GGG 0.750412 1_3:+74300094 Msa0140140:CDS
GTTGGAATGAGAACCCAGTG+GGG 0.793979 1_3:+74297308 Msa0140140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAGTAATATATAAATT+TGG - chr1_3:74299369-74299388 None:intergenic 10.0%
!! ATGATTTATGATATATAAAA+TGG + chr1_3:74299399-74299418 Msa0140140:intron 10.0%
!! TATGCATTAAATTTAAATCA+AGG + chr1_3:74295544-74295563 Msa0140140:intron 15.0%
!!! TTATATTCTATTTTCCTTTT+TGG - chr1_3:74295920-74295939 None:intergenic 15.0%
!! AAAAAGGAAAATAGAATATA+AGG + chr1_3:74295919-74295938 Msa0140140:intron 15.0%
!! TTGAATTAAAAATTTAGTCA+TGG + chr1_3:74296259-74296278 Msa0140140:intron 15.0%
!!! ATAGTAAATCTTTAAGAATT+TGG - chr1_3:74298718-74298737 None:intergenic 15.0%
!!! GAAAATATTTTCGTTATTTT+TGG - chr1_3:74298836-74298855 None:intergenic 15.0%
!! TTGTTGTATAGATTAAATAA+TGG - chr1_3:74299436-74299455 None:intergenic 15.0%
!! ATTATTTAATCTATACAACA+AGG + chr1_3:74299435-74299454 Msa0140140:intron 15.0%
!! TAAAATAAATTCAGACAATT+AGG + chr1_3:74300720-74300739 Msa0140140:exon 15.0%
!! AACTATGTAAAGGAAAAAAA+AGG - chr1_3:74294723-74294742 None:intergenic 20.0%
!!! AAAGCATTAATTTTAAGCAT+TGG + chr1_3:74294903-74294922 Msa0140140:five_prime_UTR 20.0%
!!! AGAATATAAGGATTCAATTT+TGG + chr1_3:74295931-74295950 Msa0140140:intron 20.0%
!! GGTAATTATCAAACATATAT+CGG + chr1_3:74296091-74296110 Msa0140140:intron 20.0%
!!! AATTTTTTGGAAATACTAAC+AGG - chr1_3:74296218-74296237 None:intergenic 20.0%
!! TAGTATTTCCAAAAAATTCA+AGG + chr1_3:74296220-74296239 Msa0140140:intron 20.0%
!! TGAGTAATATTGTAATTAGT+AGG - chr1_3:74296315-74296334 None:intergenic 20.0%
!!! ATTCATGATGAATTTTTAGT+TGG + chr1_3:74298241-74298260 Msa0140140:CDS 20.0%
!!! AAACAAATGTTTTCAGTAAA+GGG - chr1_3:74299056-74299075 None:intergenic 20.0%
!!! TAAACAAATGTTTTCAGTAA+AGG - chr1_3:74299057-74299076 None:intergenic 20.0%
!! CCAATCAAAAAAATTATTCA+TGG - chr1_3:74299314-74299333 None:intergenic 20.0%
!!! CCATGAATAATTTTTTTGAT+TGG + chr1_3:74299311-74299330 Msa0140140:intron 20.0%
!!! ATTGGAATTTTTTATGTAGA+GGG + chr1_3:74299329-74299348 Msa0140140:intron 20.0%
!!! ATAATAAGATTGGATTTTAG+AGG - chr1_3:74299559-74299578 None:intergenic 20.0%
!! CTAAAATCCAATCTTATTAT+TGG + chr1_3:74299559-74299578 Msa0140140:intron 20.0%
!!! ATTTTTTAAAGCCGTTATTT+TGG + chr1_3:74299638-74299657 Msa0140140:intron 20.0%
!! TATATCAATTTGTCATAATC+TGG + chr1_3:74300124-74300143 Msa0140140:CDS 20.0%
!! AGAATTCAACAATTATGATT+TGG - chr1_3:74300581-74300600 None:intergenic 20.0%
!! AATCATAATTGTTGAATTCT+TGG + chr1_3:74300581-74300600 Msa0140140:CDS 20.0%
!! ATCATAATTGTTGAATTCTT+GGG + chr1_3:74300582-74300601 Msa0140140:CDS 20.0%
! AGTTACTTGAATGAGAATTT+CGG + chr1_3:74294996-74295015 Msa0140140:five_prime_UTR 25.0%
! TTGTTAAGAATCGTAAAAGA+AGG + chr1_3:74295081-74295100 Msa0140140:five_prime_UTR 25.0%
! TAAACATAGAAGTTCCATTT+AGG - chr1_3:74295191-74295210 None:intergenic 25.0%
!!! AAGAAAAGTTGGTAGAAAAT+AGG + chr1_3:74295222-74295241 Msa0140140:intron 25.0%
!! GGTTTCTTAATAGTTTTCTT+AGG - chr1_3:74295344-74295363 None:intergenic 25.0%
! AAACCATTAGAAAGATTTAG+AGG + chr1_3:74295359-74295378 Msa0140140:intron 25.0%
! AAGGAAGTTAAGATAAACAT+AGG - chr1_3:74295499-74295518 None:intergenic 25.0%
! TTTGAGTATTCGTATAAACA+GGG - chr1_3:74295687-74295706 None:intergenic 25.0%
! ATTTGAGTATTCGTATAAAC+AGG - chr1_3:74295688-74295707 None:intergenic 25.0%
!!! TACTTACTTTTATTGTCGTA+GGG + chr1_3:74296070-74296089 Msa0140140:intron 25.0%
! TATGCAAGATAAGAGTAATA+TGG - chr1_3:74296194-74296213 None:intergenic 25.0%
! AAATTTAGTCATGGAAAGAT+TGG + chr1_3:74296268-74296287 Msa0140140:intron 25.0%
!!! GCATTTTAAAATTGTTGCAA+AGG + chr1_3:74296510-74296529 Msa0140140:intron 25.0%
! AATCGGAGAAAAGAAATTTA+TGG + chr1_3:74296771-74296790 Msa0140140:five_prime_UTR 25.0%
! GATATTGTCCATCTTAATAT+CGG + chr1_3:74297119-74297138 Msa0140140:CDS 25.0%
! ATTTATACATACAGAGAAAC+CGG - chr1_3:74297177-74297196 None:intergenic 25.0%
! ATAAATGAATCAAGTTTGAC+AGG + chr1_3:74297191-74297210 Msa0140140:CDS 25.0%
!!! ATCGTTCATCATTTTTTTCA+TGG - chr1_3:74297624-74297643 None:intergenic 25.0%
! GAAAAAAATGATGAACGATA+AGG + chr1_3:74297625-74297644 Msa0140140:CDS 25.0%
! CGCTTCTTTATAGAATTAAA+TGG - chr1_3:74298013-74298032 None:intergenic 25.0%
! TGATATCATTCCAAAAATTC+AGG + chr1_3:74298501-74298520 Msa0140140:CDS 25.0%
! AAGTTTGAATATGCATAACA+AGG - chr1_3:74298778-74298797 None:intergenic 25.0%
! TTTAAATTAATAGTCACGAG+AGG - chr1_3:74298897-74298916 None:intergenic 25.0%
!!! TATCACTATGCTAGTTTTAA+TGG - chr1_3:74298950-74298969 None:intergenic 25.0%
! ACTAGCATAGTGATAATAAA+TGG + chr1_3:74298955-74298974 Msa0140140:intron 25.0%
! TGGATCATTTGAATATACTA+AGG + chr1_3:74298987-74299006 Msa0140140:intron 25.0%
! AATTTCTACCATCAATACAT+CGG - chr1_3:74299285-74299304 None:intergenic 25.0%
!!! GATTGGAATTTTTTATGTAG+AGG + chr1_3:74299328-74299347 Msa0140140:intron 25.0%
! CTAGAAACCAATAATAAGAT+TGG - chr1_3:74299569-74299588 None:intergenic 25.0%
! ATCATCTAGTATTATTACGT+CGG - chr1_3:74299689-74299708 None:intergenic 25.0%
! CTTTGATAAACATGATAACA+AGG - chr1_3:74299861-74299880 None:intergenic 25.0%
! GGGTATTTATATATATCATG+AGG - chr1_3:74299925-74299944 None:intergenic 25.0%
! CATGATATATATAAATACCC+AGG + chr1_3:74299925-74299944 Msa0140140:intron 25.0%
! AACTTAGAAAATCATTGTTC+TGG + chr1_3:74300249-74300268 Msa0140140:intron 25.0%
! ACTTAGAAAATCATTGTTCT+GGG + chr1_3:74300250-74300269 Msa0140140:intron 25.0%
! AATATCTTTCTAACCTTTCA+TGG + chr1_3:74300349-74300368 Msa0140140:intron 25.0%
! ATATCTTTCTAACCTTTCAT+GGG + chr1_3:74300350-74300369 Msa0140140:intron 25.0%
! TAGTTTAAACATTTACCACA+GGG - chr1_3:74300386-74300405 None:intergenic 25.0%
! ATAGTTTAAACATTTACCAC+AGG - chr1_3:74300387-74300406 None:intergenic 25.0%
! TGTGGTAAATGTTTAAACTA+TGG + chr1_3:74300386-74300405 Msa0140140:intron 25.0%
!! TTGTATTCAAATGTCTTGTT+AGG + chr1_3:74300452-74300471 Msa0140140:intron 25.0%
!! AACAATTATGATTTGGAAGA+TGG - chr1_3:74300574-74300593 None:intergenic 25.0%
!!! TTTCTAGCTTGAAATTTTGT+AGG + chr1_3:74300835-74300854 Msa0140140:three_prime_UTR 25.0%
!!! TTCTAGCTTGAAATTTTGTA+GGG + chr1_3:74300836-74300855 Msa0140140:three_prime_UTR 25.0%
! CGATGTATATTATATGAACT+GGG + chr1_3:74300948-74300967 Msa0140140:three_prime_UTR 25.0%
!!! TGAGGTACTTTTTCATTATA+CGG + chr1_3:74300983-74301002 Msa0140140:three_prime_UTR 25.0%
GTCAAAGTGAAACTATGTAA+AGG - chr1_3:74294733-74294752 None:intergenic 30.0%
GCAATTAGAGCATAAATAGA+TGG + chr1_3:74294971-74294990 Msa0140140:five_prime_UTR 30.0%
TGTGAAACCGAAAAATTCAT+CGG + chr1_3:74295022-74295041 Msa0140140:five_prime_UTR 30.0%
GGAACTTCTATGTTTATCTT+AGG + chr1_3:74295195-74295214 Msa0140140:intron 30.0%
! GAAAATAGGCTTAGATGTTT+TGG + chr1_3:74295236-74295255 Msa0140140:intron 30.0%
TGACCTCTAAATCTTTCTAA+TGG - chr1_3:74295365-74295384 None:intergenic 30.0%
AAGATTTAGAGGTCAATGAT+TGG + chr1_3:74295370-74295389 Msa0140140:intron 30.0%
TCAATGATTGGATCCAAATA+TGG + chr1_3:74295382-74295401 Msa0140140:intron 30.0%
GTTCTATCAAAGACCATATT+TGG - chr1_3:74295398-74295417 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr1_3:74295402-74295421 Msa0140140:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr1_3:74295405-74295424 Msa0140140:intron 30.0%
! ATGAAAGACTGTTTTCTACA+TGG + chr1_3:74295651-74295670 Msa0140140:intron 30.0%
ATTCACAATAACTTTCTACG+TGG - chr1_3:74295761-74295780 None:intergenic 30.0%
!!! ATATGCATTGCTATTTTGCT+TGG + chr1_3:74295808-74295827 Msa0140140:intron 30.0%
!!! TAAGGATTCAATTTTGGCTA+TGG + chr1_3:74295937-74295956 Msa0140140:intron 30.0%
AAAGGAAAAGGACTCAAAAT+TGG - chr1_3:74295976-74295995 None:intergenic 30.0%
AAAATGTGGAGGGAAATAAA+AGG - chr1_3:74295994-74296013 None:intergenic 30.0%
! TATTGGGTATGAGATTTTGT+CGG + chr1_3:74296047-74296066 Msa0140140:intron 30.0%
!! GTACTTACTTTTATTGTCGT+AGG + chr1_3:74296069-74296088 Msa0140140:intron 30.0%
TTTCCAAAAAATTCAAGGCA+CGG + chr1_3:74296225-74296244 Msa0140140:intron 30.0%
ATTTCTCCTACAATGTATAG+TGG - chr1_3:74296422-74296441 None:intergenic 30.0%
!!! TTTTGAAATTTGTGCTGATG+AGG + chr1_3:74296626-74296645 Msa0140140:five_prime_UTR 30.0%
GTGAAGAAGTTGAAAATTCA+TGG + chr1_3:74296675-74296694 Msa0140140:five_prime_UTR 30.0%
AAGAAGTTGAAAATTCATGG+TGG + chr1_3:74296678-74296697 Msa0140140:five_prime_UTR 30.0%
AGAAGTTGAAAATTCATGGT+GGG + chr1_3:74296679-74296698 Msa0140140:five_prime_UTR 30.0%
TACAACTCTTATGATACTTG+CGG + chr1_3:74296860-74296879 Msa0140140:exon 30.0%
TTTAGTGGTTGGCATAATAA+TGG + chr1_3:74296899-74296918 Msa0140140:CDS 30.0%
GAAGAAGAAAATTACAGTTC+AGG + chr1_3:74297043-74297062 Msa0140140:CDS 30.0%
TCAATATATGATCTACTTCC+TGG + chr1_3:74297095-74297114 Msa0140140:CDS 30.0%
CAGATAGAAGAAAAGGATTA+AGG - chr1_3:74297244-74297263 None:intergenic 30.0%
! CTTAATCCTTTTCTTCTATC+TGG + chr1_3:74297242-74297261 Msa0140140:CDS 30.0%
TTTGTTCCAGATAGAAGAAA+AGG - chr1_3:74297251-74297270 None:intergenic 30.0%
GCTACCATTATTGGAAAAAT+AGG + chr1_3:74297401-74297420 Msa0140140:CDS 30.0%
!!! TTTTTTTCATGGCAAAAGCA+AGG - chr1_3:74297613-74297632 None:intergenic 30.0%
! AAGCTTTTACAACAGTCATA+TGG - chr1_3:74297736-74297755 None:intergenic 30.0%
TTGTAAAAGCTTGCATTTGT+GGG + chr1_3:74297744-74297763 Msa0140140:CDS 30.0%
GAATCAATATTCAACAACAC+CGG + chr1_3:74297848-74297867 Msa0140140:CDS 30.0%
GAAGTGGTCAAAAATGAAAA+TGG + chr1_3:74297875-74297894 Msa0140140:CDS 30.0%
AAATGGAAAGATTGAGATTC+TGG + chr1_3:74297892-74297911 Msa0140140:CDS 30.0%
AATGGAAAGATTGAGATTCT+GGG + chr1_3:74297893-74297912 Msa0140140:CDS 30.0%
! TAATTCTATAAAGAAGCGCA+TGG + chr1_3:74298015-74298034 Msa0140140:CDS 30.0%
! AATTCTATAAAGAAGCGCAT+GGG + chr1_3:74298016-74298035 Msa0140140:CDS 30.0%
GACAAATTTGTAGACTCAAA+TGG + chr1_3:74298115-74298134 Msa0140140:CDS 30.0%
CATGAATATCAATGTAAGCA+AGG - chr1_3:74298228-74298247 None:intergenic 30.0%
GTGTAACCATTAATAGGAAT+AGG - chr1_3:74298271-74298290 None:intergenic 30.0%
ACACAAGTGTAACCATTAAT+AGG - chr1_3:74298277-74298296 None:intergenic 30.0%
ATTAATGGTTACACTTGTGT+AGG + chr1_3:74298277-74298296 Msa0140140:CDS 30.0%
AGACAACATAAATACTGCAA+AGG + chr1_3:74298393-74298412 Msa0140140:CDS 30.0%
! TTGATATGCACCTGAATTTT+TGG - chr1_3:74298514-74298533 None:intergenic 30.0%
! TTGCTTGACAATTTGTTTGA+AGG + chr1_3:74298568-74298587 Msa0140140:intron 30.0%
!! TAACTAGACCTTTTAATTCC+AGG - chr1_3:74298677-74298696 None:intergenic 30.0%
GAATTAAAAGGTCTAGTTAG+AGG + chr1_3:74298678-74298697 Msa0140140:intron 30.0%
! AACGAAAATATTTTCTCGCT+AGG + chr1_3:74298841-74298860 Msa0140140:intron 30.0%
AAAAGAGCCATATGATTACA+TGG + chr1_3:74298914-74298933 Msa0140140:intron 30.0%
TCAACATCCATGTAATCATA+TGG - chr1_3:74298924-74298943 None:intergenic 30.0%
!! ATAATAAATGGACTGAGTGA+TGG + chr1_3:74298967-74298986 Msa0140140:intron 30.0%
ATCAATATGTCTAAATCTGC+AGG + chr1_3:74299088-74299107 Msa0140140:intron 30.0%
GTAATATAGCTTATACCAAG+TGG + chr1_3:74299457-74299476 Msa0140140:intron 30.0%
ACCTGAAATTGCCAAAATAA+CGG - chr1_3:74299652-74299671 None:intergenic 30.0%
GTATGTTTATGTAGACTGAA+CGG - chr1_3:74299747-74299766 None:intergenic 30.0%
TTTATGGGTCAACATGATTA+TGG + chr1_3:74299975-74299994 Msa0140140:CDS 30.0%
! CTTTTCATCAACTCATCATT+AGG - chr1_3:74300036-74300055 None:intergenic 30.0%
! AAAACAGCTTTTCATCTTGA+TGG + chr1_3:74300165-74300184 Msa0140140:CDS 30.0%
TTCAATATCAGATCACTATC+CGG - chr1_3:74300192-74300211 None:intergenic 30.0%
CAATTCATTTGTATTCTGTC+AGG + chr1_3:74300224-74300243 Msa0140140:CDS 30.0%
CAATCAGAGAACATATTACA+AGG - chr1_3:74300414-74300433 None:intergenic 30.0%
CAAGACATTTGAATACAAGT+AGG - chr1_3:74300450-74300469 None:intergenic 30.0%
!! GAGAGGATAAATGTTTTTGA+AGG + chr1_3:74300504-74300523 Msa0140140:CDS 30.0%
CTGTGAACACATAATTCTTT+AGG - chr1_3:74300533-74300552 None:intergenic 30.0%
! AATTATGATTTGGAAGATGG+CGG - chr1_3:74300571-74300590 None:intergenic 30.0%
AGAAAAACACTTGGTTCAAT+CGG - chr1_3:74300820-74300839 None:intergenic 30.0%
TTTCAAGCTAGAAAAACACT+TGG - chr1_3:74300829-74300848 None:intergenic 30.0%
AACTGAGTAGAGACTAAATT+TGG + chr1_3:74300860-74300879 Msa0140140:three_prime_UTR 30.0%
! CTAAATTTGGTATTTGTTGC+TGG + chr1_3:74300873-74300892 Msa0140140:three_prime_UTR 30.0%
GCGATGTATATTATATGAAC+TGG + chr1_3:74300947-74300966 Msa0140140:three_prime_UTR 30.0%
! ACTGGGATTTTTGTATAATG+AGG + chr1_3:74300965-74300984 Msa0140140:three_prime_UTR 30.0%
!!! GAGGTACTTTTTCATTATAC+GGG + chr1_3:74300984-74301003 Msa0140140:three_prime_UTR 30.0%
!!! AGGTACTTTTTCATTATACG+GGG + chr1_3:74300985-74301004 Msa0140140:three_prime_UTR 30.0%
! GCTTCTTCCGATGAATTTTT+CGG - chr1_3:74295032-74295051 None:intergenic 35.0%
TAGCTTCAGCTTCAAATCTT+TGG - chr1_3:74295129-74295148 None:intergenic 35.0%
GATCCAGATATCATCCTAAA+TGG + chr1_3:74295174-74295193 Msa0140140:intron 35.0%
! GTTCCATTTAGGATGATATC+TGG - chr1_3:74295180-74295199 None:intergenic 35.0%
TCTTAGGCTTGAAGAAAAGT+TGG + chr1_3:74295211-74295230 Msa0140140:intron 35.0%
TTGATCTACTCTTCTTACCA+CGG - chr1_3:74295285-74295304 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG + chr1_3:74295286-74295305 Msa0140140:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr1_3:74295289-74295308 Msa0140140:intron 35.0%
CATTGAGATTAGTGAACAGA+AGG - chr1_3:74295518-74295537 None:intergenic 35.0%
!!! GGTAGTAGTTTTGATGTGAA+TGG - chr1_3:74295613-74295632 None:intergenic 35.0%
CATTGAATGTAATGCAGTAG+TGG - chr1_3:74295634-74295653 None:intergenic 35.0%
TCCTTATTATCCGTAGAAAC+CGG + chr1_3:74295724-74295743 Msa0140140:intron 35.0%
TTTGGCAGACAAAAGACTAA+GGG - chr1_3:74295902-74295921 None:intergenic 35.0%
! TTTTGGCAGACAAAAGACTA+AGG - chr1_3:74295903-74295922 None:intergenic 35.0%
! TAGTCTTTTGTCTGCCAAAA+AGG + chr1_3:74295903-74295922 Msa0140140:intron 35.0%
AAGGACTCAAAATTGGCAAT+GGG - chr1_3:74295969-74295988 None:intergenic 35.0%
AAAGGACTCAAAATTGGCAA+TGG - chr1_3:74295970-74295989 None:intergenic 35.0%
TGGAGGGAAATAAAAGGAAA+AGG - chr1_3:74295988-74296007 None:intergenic 35.0%
! GTTAGTCTGAAAAATGTGGA+GGG - chr1_3:74296004-74296023 None:intergenic 35.0%
! AGTTAGTCTGAAAAATGTGG+AGG - chr1_3:74296005-74296024 None:intergenic 35.0%
! AGCAGTTAGTCTGAAAAATG+TGG - chr1_3:74296008-74296027 None:intergenic 35.0%
ATCTCATACCCAATACAACA+TGG - chr1_3:74296042-74296061 None:intergenic 35.0%
AAACAAGTCCAAACTAAGCA+TGG - chr1_3:74296155-74296174 None:intergenic 35.0%
TTCCAAAAAATTCAAGGCAC+GGG + chr1_3:74296226-74296245 Msa0140140:intron 35.0%
GTAATTAGTAGGATAGTGAG+AGG - chr1_3:74296304-74296323 None:intergenic 35.0%
! GTAGATTGACTTTCTTACCA+TGG - chr1_3:74296488-74296507 None:intergenic 35.0%
GAAGTTGAAAATTCATGGTG+GGG + chr1_3:74296680-74296699 Msa0140140:five_prime_UTR 35.0%
TCAATTCCTGTGTCAACAAT+GGG + chr1_3:74296724-74296743 Msa0140140:five_prime_UTR 35.0%
! TCTTTTCTCCGATTCAGTAA+AGG - chr1_3:74296765-74296784 None:intergenic 35.0%
ATACAAAAACCCAAAATCCC+CGG - chr1_3:74296824-74296843 None:intergenic 35.0%
!!! GGGATTTTGGGTTTTTGTAT+GGG + chr1_3:74296824-74296843 Msa0140140:five_prime_UTR 35.0%
! TGGTTGGCATAATAATGGAA+GGG + chr1_3:74296904-74296923 Msa0140140:CDS 35.0%
TGATTGTCTGTAATCACTAG+TGG - chr1_3:74296997-74297016 None:intergenic 35.0%
CAGACAATCATTGCAGTTTA+AGG + chr1_3:74297007-74297026 Msa0140140:CDS 35.0%
TTAAGATGGACAATATCACC+AGG - chr1_3:74297116-74297135 None:intergenic 35.0%
CTTGATCTCCGATATTAAGA+TGG - chr1_3:74297130-74297149 None:intergenic 35.0%
!! GAGGCCTATTTTTCCAATAA+TGG - chr1_3:74297408-74297427 None:intergenic 35.0%
! TGATGATGCAATGGAAATTG+TGG + chr1_3:74297514-74297533 Msa0140140:CDS 35.0%
GTTGTAAAAGCTTGCATTTG+TGG + chr1_3:74297743-74297762 Msa0140140:CDS 35.0%
AGAATTGCTATAGCAGAATC+AGG - chr1_3:74297824-74297843 None:intergenic 35.0%
! ATTCTATAAAGAAGCGCATG+GGG + chr1_3:74298017-74298036 Msa0140140:CDS 35.0%
TGCAGCAAGAATTATTTCAG+AGG - chr1_3:74298092-74298111 None:intergenic 35.0%
TGTATCATTCAAGTGACTGA+TGG - chr1_3:74298167-74298186 None:intergenic 35.0%
ATCAATGTAAGCAAGGCAAA+GGG - chr1_3:74298221-74298240 None:intergenic 35.0%
TATCAATGTAAGCAAGGCAA+AGG - chr1_3:74298222-74298241 None:intergenic 35.0%
GGAAGTCCTATTCCTATTAA+TGG + chr1_3:74298262-74298281 Msa0140140:CDS 35.0%
TTACACTTGTGTAGGAATAG+TGG + chr1_3:74298285-74298304 Msa0140140:CDS 35.0%
TACACTTGTGTAGGAATAGT+GGG + chr1_3:74298286-74298305 Msa0140140:CDS 35.0%
ATTACAGTTAGGATGGTTAC+CGG + chr1_3:74298370-74298389 Msa0140140:CDS 35.0%
TGCAGTATTTATGTTGTCTC+CGG - chr1_3:74298392-74298411 None:intergenic 35.0%
!! GAATGTGGAATTTTAACCGA+TGG + chr1_3:74298427-74298446 Msa0140140:CDS 35.0%
!! TGGAATTTTAACCGATGGTA+TGG + chr1_3:74298432-74298451 Msa0140140:CDS 35.0%
ATTCCTTCTCACTCATTTCA+CGG - chr1_3:74298477-74298496 None:intergenic 35.0%
!! TCTTACCAGAGTTTGAGTTT+TGG + chr1_3:74298600-74298619 Msa0140140:intron 35.0%
! TTTGGCGTGCATTTCTTTTA+AGG + chr1_3:74298618-74298637 Msa0140140:intron 35.0%
! TTGGCGTGCATTTCTTTTAA+GGG + chr1_3:74298619-74298638 Msa0140140:intron 35.0%
! GCATAACAAGGATTTTGCAT+AGG - chr1_3:74298766-74298785 None:intergenic 35.0%
!!! CACTATGCTAGTTTTAATGG+CGG - chr1_3:74298947-74298966 None:intergenic 35.0%
ATGTCTAAATCTGCAGGTAA+TGG + chr1_3:74299094-74299113 Msa0140140:intron 35.0%
CACTTCATGAAGCAGATATT+GGG + chr1_3:74299219-74299238 Msa0140140:CDS 35.0%
TCTTCATACCGATGTATTGA+TGG + chr1_3:74299274-74299293 Msa0140140:intron 35.0%
TGAACAAAAACTTCTCCACT+TGG - chr1_3:74299475-74299494 None:intergenic 35.0%
ATAGAACGACAACTAGCTAA+GGG - chr1_3:74299606-74299625 None:intergenic 35.0%
TATAGAACGACAACTAGCTA+AGG - chr1_3:74299607-74299626 None:intergenic 35.0%
TATCGTCACTGTAGCTAAAT+GGG + chr1_3:74299720-74299739 Msa0140140:CDS 35.0%
CAACAACATTTACAGTTAGC+TGG - chr1_3:74299786-74299805 None:intergenic 35.0%
AACATGATTATGGACACACT+TGG + chr1_3:74299985-74300004 Msa0140140:CDS 35.0%
TTCATCAACTCATCATTAGG+AGG - chr1_3:74300033-74300052 None:intergenic 35.0%
ACTTTATCAGTAACGTGATG+TGG + chr1_3:74300079-74300098 Msa0140140:CDS 35.0%
TCAATATCAGATCACTATCC+GGG - chr1_3:74300191-74300210 None:intergenic 35.0%
AACCACAGTTTCAAACTTAG+AGG - chr1_3:74300627-74300646 None:intergenic 35.0%
!! TATTTTAGACAGATCCCACA+GGG - chr1_3:74300707-74300726 None:intergenic 35.0%
!!! TTATTTTAGACAGATCCCAC+AGG - chr1_3:74300708-74300727 None:intergenic 35.0%
CAGACAATTAGGTACATTCT+TGG + chr1_3:74300731-74300750 Msa0140140:three_prime_UTR 35.0%
CTGTTCTCACATGAAAATCA+AGG + chr1_3:74300761-74300780 Msa0140140:three_prime_UTR 35.0%
AAGCTATAGACGCTCTAATC+AGG + chr1_3:74295143-74295162 Msa0140140:five_prime_UTR 40.0%
!! GTTTTGGACATGTAGAGAGA+AGG + chr1_3:74295252-74295271 Msa0140140:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_3:74295314-74295333 Msa0140140:intron 40.0%
TTCGTATAAACAGGGAGTTC+TGG - chr1_3:74295679-74295698 None:intergenic 40.0%
TCCGGTTTCTACGGATAATA+AGG - chr1_3:74295728-74295747 None:intergenic 40.0%
!!! GCATTGCTATTTTGCTTGGT+TGG + chr1_3:74295812-74295831 Msa0140140:intron 40.0%
TCCTGTCTTCCATGTTGTAT+TGG + chr1_3:74296030-74296049 Msa0140140:intron 40.0%
CCTGTCTTCCATGTTGTATT+GGG + chr1_3:74296031-74296050 Msa0140140:intron 40.0%
AGTCCAAACTAAGCATGGAA+GGG - chr1_3:74296150-74296169 None:intergenic 40.0%
AAGTCCAAACTAAGCATGGA+AGG - chr1_3:74296151-74296170 None:intergenic 40.0%
!!! AACCCGTGCCTTGAATTTTT+TGG - chr1_3:74296231-74296250 None:intergenic 40.0%
!! ACTCAAATAGCCTAGCTTTG+TGG + chr1_3:74296330-74296349 Msa0140140:intron 40.0%
!! CTCAAATAGCCTAGCTTTGT+GGG + chr1_3:74296331-74296350 Msa0140140:intron 40.0%
!! TCAAATAGCCTAGCTTTGTG+GGG + chr1_3:74296332-74296351 Msa0140140:intron 40.0%
TACAATGTATAGTGGTGGCA+GGG - chr1_3:74296414-74296433 None:intergenic 40.0%
TCTCCTACAATGTATAGTGG+TGG - chr1_3:74296419-74296438 None:intergenic 40.0%
GTAGGAGAAATTCAGAGTTG+CGG + chr1_3:74296431-74296450 Msa0140140:intron 40.0%
AGTAAGTATTTACTCCCTCC+AGG + chr1_3:74296552-74296571 Msa0140140:intron 40.0%
TTGACAAACTTAAGCCTGGA+GGG - chr1_3:74296569-74296588 None:intergenic 40.0%
! AAATTTGTGCTGATGAGGCA+GGG + chr1_3:74296631-74296650 Msa0140140:five_prime_UTR 40.0%
! AAAATTCATGGTGGGGTTGA+GGG + chr1_3:74296687-74296706 Msa0140140:five_prime_UTR 40.0%
GACACAGGAATTGAGTTTGT+CGG - chr1_3:74296718-74296737 None:intergenic 40.0%
CTCAATTCCTGTGTCAACAA+TGG + chr1_3:74296723-74296742 Msa0140140:five_prime_UTR 40.0%
TGATATCCCATTGTTGACAC+AGG - chr1_3:74296733-74296752 None:intergenic 40.0%
TACAAAAACCCAAAATCCCC+GGG - chr1_3:74296823-74296842 None:intergenic 40.0%
!!! GGGGATTTTGGGTTTTTGTA+TGG + chr1_3:74296823-74296842 Msa0140140:five_prime_UTR 40.0%
! CTGTGCTTTTGTCTCTTTAG+TGG + chr1_3:74296884-74296903 Msa0140140:CDS 40.0%
! GCTTTTGTCTCTTTAGTGGT+TGG + chr1_3:74296888-74296907 Msa0140140:CDS 40.0%
! GTGGTTGGCATAATAATGGA+AGG + chr1_3:74296903-74296922 Msa0140140:CDS 40.0%
! TTGGCATAATAATGGAAGGG+TGG + chr1_3:74296907-74296926 Msa0140140:CDS 40.0%
AAATTACAGTTCAGGTCACG+CGG + chr1_3:74297051-74297070 Msa0140140:CDS 40.0%
! TCTATCTGGAACAAAAGTCC+AGG + chr1_3:74297256-74297275 Msa0140140:CDS 40.0%
AAGATGCTTGTGACTACTGT+TGG + chr1_3:74297290-74297309 Msa0140140:CDS 40.0%
CTAATGGCTACTCTAAGTGA+AGG + chr1_3:74297335-74297354 Msa0140140:CDS 40.0%
! CCATTGAGTTTTACCTGCAA+GGG - chr1_3:74297377-74297396 None:intergenic 40.0%
AAGTCACAACAGCGAAAAAG+AGG - chr1_3:74297427-74297446 None:intergenic 40.0%
TGTTGTGACTTTCTCAGTGT+TGG + chr1_3:74297436-74297455 Msa0140140:CDS 40.0%
ACAGCTAAAGGTAAACCTTC+AGG - chr1_3:74297581-74297600 None:intergenic 40.0%
CATTTGTGGGAAGATCAAAG+AGG + chr1_3:74297757-74297776 Msa0140140:CDS 40.0%
TGAGAAATCAGAAGAGTCGA+TGG - chr1_3:74297792-74297811 None:intergenic 40.0%
TCAATATTCAACAACACCGG+AGG + chr1_3:74297851-74297870 Msa0140140:CDS 40.0%
! ATTTTTGACCACTTCACCTC+CGG - chr1_3:74297870-74297889 None:intergenic 40.0%
AGACTGCCATCTTGGAATTT+GGG + chr1_3:74297927-74297946 Msa0140140:CDS 40.0%
TGATAGCCCAAATTCCAAGA+TGG - chr1_3:74297936-74297955 None:intergenic 40.0%
TTGGAATTTGGGCTATCACT+TGG + chr1_3:74297938-74297957 Msa0140140:CDS 40.0%
TTGATGCTTGTCGTTCTTTG+TGG - chr1_3:74297973-74297992 None:intergenic 40.0%
! TTCTATAAAGAAGCGCATGG+GGG + chr1_3:74298018-74298037 Msa0140140:CDS 40.0%
AATTTGCCAATGAAGCTCTC+CGG + chr1_3:74298194-74298213 Msa0140140:CDS 40.0%
! TGGCGTGCATTTCTTTTAAG+GGG + chr1_3:74298620-74298639 Msa0140140:intron 40.0%
!! GTGCATTTCTTTTAAGGGGT+GGG + chr1_3:74298624-74298643 Msa0140140:intron 40.0%
!! TGCATTTCTTTTAAGGGGTG+GGG + chr1_3:74298625-74298644 Msa0140140:intron 40.0%
!! CTTGGTGTCCTGGAATTAAA+AGG + chr1_3:74298666-74298685 Msa0140140:intron 40.0%
ACTAGGGTATGCTTATCCAT+GGG - chr1_3:74299131-74299150 None:intergenic 40.0%
ATACCCTAGTGAAACACTTG+AGG + chr1_3:74299141-74299160 Msa0140140:CDS 40.0%
TGTCCTCAAGTGTTTCACTA+GGG - chr1_3:74299147-74299166 None:intergenic 40.0%
TTGTCCTCAAGTGTTTCACT+AGG - chr1_3:74299148-74299167 None:intergenic 40.0%
CTTGAGGACAACATTTGAAG+AGG + chr1_3:74299157-74299176 Msa0140140:CDS 40.0%
ATATCTGCTTCATGAAGTGC+TGG - chr1_3:74299218-74299237 None:intergenic 40.0%
GCACTTCATGAAGCAGATAT+TGG + chr1_3:74299218-74299237 Msa0140140:CDS 40.0%
GCTAGTTGTCGTTCTATACT+TGG + chr1_3:74299609-74299628 Msa0140140:intron 40.0%
!!! GCCGTTATTTTGGCAATTTC+AGG + chr1_3:74299648-74299667 Msa0140140:intron 40.0%
CTATCGTCACTGTAGCTAAA+TGG + chr1_3:74299719-74299738 Msa0140140:CDS 40.0%
ATCGTCACTGTAGCTAAATG+GGG + chr1_3:74299721-74299740 Msa0140140:CDS 40.0%
TTCACTTCTGCTTGTTTGAC+AGG + chr1_3:74299820-74299839 Msa0140140:CDS 40.0%
TAAAAGTTGAACCGCAGTGA+GGG - chr1_3:74299959-74299978 None:intergenic 40.0%
ATAAAAGTTGAACCGCAGTG+AGG - chr1_3:74299960-74299979 None:intergenic 40.0%
! TCACTGCGGTTCAACTTTTA+TGG + chr1_3:74299959-74299978 Msa0140140:CDS 40.0%
! CACTGCGGTTCAACTTTTAT+GGG + chr1_3:74299960-74299979 Msa0140140:CDS 40.0%
!! TTGATGAAAAGAGCACCAGT+TGG + chr1_3:74300045-74300064 Msa0140140:CDS 40.0%
AAGTTTCCTTTCCTACCAAC+TGG - chr1_3:74300063-74300082 None:intergenic 40.0%
TTATCAGTAACGTGATGTGG+AGG + chr1_3:74300082-74300101 Msa0140140:CDS 40.0%
!!! AAGCTGTTTTTCCTCTTGTC+TGG - chr1_3:74300155-74300174 None:intergenic 40.0%
ATTTATCCTCTCCATGTCTC+TGG - chr1_3:74300496-74300515 None:intergenic 40.0%
CAAACTTAGAGGAGATGTGT+TGG - chr1_3:74300616-74300635 None:intergenic 40.0%
! CTCCTCTAAGTTTGAAACTG+TGG + chr1_3:74300622-74300641 Msa0140140:CDS 40.0%
! TGGTTCATTAGCGTTTTCCT+TGG + chr1_3:74300642-74300661 Msa0140140:CDS 40.0%
ATCTTCAAAGCTGCACCAAT+TGG - chr1_3:74300681-74300700 None:intergenic 40.0%
!! AAGAAGCACTTCAGAGATGG+AGG + chr1_3:74295045-74295064 Msa0140140:five_prime_UTR 45.0%
! AGAGATGGAGGAAGCTTTGT+TGG + chr1_3:74295057-74295076 Msa0140140:five_prime_UTR 45.0%
!! GAGATGGAGGAAGCTTTGTT+GGG + chr1_3:74295058-74295077 Msa0140140:five_prime_UTR 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr1_3:74295298-74295317 Msa0140140:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_3:74295308-74295327 Msa0140140:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr1_3:74295452-74295471 None:intergenic 45.0%
ACCAGAACTTCCGGTTTCTA+CGG - chr1_3:74295737-74295756 None:intergenic 45.0%
CCCAATACAACATGGAAGAC+AGG - chr1_3:74296034-74296053 None:intergenic 45.0%
!! CTTTTTCACCCCACAAAGCT+AGG - chr1_3:74296343-74296362 None:intergenic 45.0%
!! CTAGCTTTGTGGGGTGAAAA+AGG + chr1_3:74296341-74296360 Msa0140140:intron 45.0%
TTGTGGGGTGAAAAAGGACA+TGG + chr1_3:74296347-74296366 Msa0140140:intron 45.0%
CTACAATGTATAGTGGTGGC+AGG - chr1_3:74296415-74296434 None:intergenic 45.0%
CTGCCACCACTATACATTGT+AGG + chr1_3:74296413-74296432 Msa0140140:intron 45.0%
GAAATTCAGAGTTGCGGTGT+TGG + chr1_3:74296437-74296456 Msa0140140:five_prime_UTR 45.0%
GCTGCACTTCAGTTTATCCA+TGG + chr1_3:74296468-74296487 Msa0140140:five_prime_UTR 45.0%
CTTGACAAACTTAAGCCTGG+AGG - chr1_3:74296570-74296589 None:intergenic 45.0%
TCGCTTGACAAACTTAAGCC+TGG - chr1_3:74296573-74296592 None:intergenic 45.0%
! GAAATTTGTGCTGATGAGGC+AGG + chr1_3:74296630-74296649 Msa0140140:five_prime_UTR 45.0%
! GAAAATTCATGGTGGGGTTG+AGG + chr1_3:74296686-74296705 Msa0140140:five_prime_UTR 45.0%
CATCCGAGCCTTTACTGAAT+CGG + chr1_3:74296754-74296773 Msa0140140:five_prime_UTR 45.0%
TCTCCGATTCAGTAAAGGCT+CGG - chr1_3:74296760-74296779 None:intergenic 45.0%
AATTCACTGAAAGTCCAGCC+CGG + chr1_3:74296802-74296821 Msa0140140:five_prime_UTR 45.0%
! AATAATGGAAGGGTGGCCTA+AGG + chr1_3:74296914-74296933 Msa0140140:CDS 45.0%
! ATAATGGAAGGGTGGCCTAA+GGG + chr1_3:74296915-74296934 Msa0140140:CDS 45.0%
ACACAAAAAGCCCATCAGCA+GGG - chr1_3:74297154-74297173 None:intergenic 45.0%
TTAAGGTCACTGACGTTCAC+TGG - chr1_3:74297227-74297246 None:intergenic 45.0%
! TCTGGAACAAAAGTCCAGGA+TGG + chr1_3:74297260-74297279 Msa0140140:CDS 45.0%
TGTTGGAATGAGAACCCAGT+GGG + chr1_3:74297307-74297326 Msa0140140:CDS 45.0%
AACCCAGTGGGGTAAACTAA+TGG + chr1_3:74297319-74297338 Msa0140140:CDS 45.0%
! AGCCATTAGTTTACCCCACT+GGG - chr1_3:74297324-74297343 None:intergenic 45.0%
! TAGCCATTAGTTTACCCCAC+TGG - chr1_3:74297325-74297344 None:intergenic 45.0%
ATGGCTACTCTAAGTGAAGG+TGG + chr1_3:74297338-74297357 Msa0140140:CDS 45.0%
AGATGATGAAACTCCCTTGC+AGG + chr1_3:74297361-74297380 Msa0140140:CDS 45.0%
CCCTTGCAGGTAAAACTCAA+TGG + chr1_3:74297374-74297393 Msa0140140:CDS 45.0%
! GCCATTGAGTTTTACCTGCA+AGG - chr1_3:74297378-74297397 None:intergenic 45.0%
AATGGCGTGGCTACCATTAT+TGG + chr1_3:74297392-74297411 Msa0140140:CDS 45.0%
!! ACTTTCTCAGTGTTGGTCCA+AGG + chr1_3:74297443-74297462 Msa0140140:CDS 45.0%
!! CTTTCTCAGTGTTGGTCCAA+GGG + chr1_3:74297444-74297463 Msa0140140:CDS 45.0%
AAGAAGGTTCCCAATGGACA+TGG + chr1_3:74297486-74297505 Msa0140140:CDS 45.0%
ATCACCAGACCATGTCCATT+GGG - chr1_3:74297498-74297517 None:intergenic 45.0%
! ATGGTCTGGTGATGATGCAA+TGG + chr1_3:74297505-74297524 Msa0140140:CDS 45.0%
! GTTGTTGTTGCTGTTCCTGA+AGG + chr1_3:74297563-74297582 Msa0140140:CDS 45.0%
AGGCTCAATGTCACAGCTAA+AGG - chr1_3:74297593-74297612 None:intergenic 45.0%
TCTCACAAGCAGCCAAATGA+CGG - chr1_3:74297658-74297677 None:intergenic 45.0%
TTTGGCTGCTTGTGAGACAA+TGG + chr1_3:74297661-74297680 Msa0140140:CDS 45.0%
TTGGCTGCTTGTGAGACAAT+GGG + chr1_3:74297662-74297681 Msa0140140:CDS 45.0%
ACTATCTGCAGTGACAAGAC+TGG + chr1_3:74297695-74297714 Msa0140140:CDS 45.0%
GAGACTGCCATCTTGGAATT+TGG + chr1_3:74297926-74297945 Msa0140140:CDS 45.0%
GAATTTGGGCTATCACTTGG+TGG + chr1_3:74297941-74297960 Msa0140140:CDS 45.0%
! GTAGTTCTACAGCTTCCTGA+TGG + chr1_3:74298040-74298059 Msa0140140:CDS 45.0%
TGGTTACAGAGCACATTGCA+AGG + chr1_3:74298063-74298082 Msa0140140:CDS 45.0%
GGTTACAGAGCACATTGCAA+GGG + chr1_3:74298064-74298083 Msa0140140:CDS 45.0%
CTGATGGAGTCTTCATCAAG+TGG - chr1_3:74298151-74298170 None:intergenic 45.0%
ATTAAAGATCCAGTCCGTCC+TGG + chr1_3:74298310-74298329 Msa0140140:CDS 45.0%
GAGAGTCTGTAGCCATTTGT+AGG + chr1_3:74298338-74298357 Msa0140140:CDS 45.0%
GTCTGTAGCCATTTGTAGGT+CGG + chr1_3:74298342-74298361 Msa0140140:CDS 45.0%
AATACCAGCCGACCTACAAA+TGG - chr1_3:74298353-74298372 None:intergenic 45.0%
GGCTGGTATTACAGTTAGGA+TGG + chr1_3:74298363-74298382 Msa0140140:CDS 45.0%
AAGGCGATTGCTAGAGAATG+TGG + chr1_3:74298412-74298431 Msa0140140:CDS 45.0%
TCACTCATTTCACGGAACTC+CGG - chr1_3:74298469-74298488 None:intergenic 45.0%
GTTCCGTGAAATGAGTGAGA+AGG + chr1_3:74298471-74298490 Msa0140140:CDS 45.0%
!! CGTGCATTTCTTTTAAGGGG+TGG + chr1_3:74298623-74298642 Msa0140140:intron 45.0%
!! GCATTTCTTTTAAGGGGTGG+GGG + chr1_3:74298626-74298645 Msa0140140:intron 45.0%
GTGGGGTACATGAATGAACT+TGG + chr1_3:74298648-74298667 Msa0140140:intron 45.0%
!! CATGAATGAACTTGGTGTCC+TGG + chr1_3:74298656-74298675 Msa0140140:intron 45.0%
! CTAAGGTGATTTTCAGAGCC+TGG + chr1_3:74299004-74299023 Msa0140140:intron 45.0%
AGAGCCTGGAAGTAAAAGCT+TGG + chr1_3:74299018-74299037 Msa0140140:intron 45.0%
! ACCACCAAGCTTTTACTTCC+AGG - chr1_3:74299025-74299044 None:intergenic 45.0%
CACTAGGGTATGCTTATCCA+TGG - chr1_3:74299132-74299151 None:intergenic 45.0%
GAAGAGGTTGTTGCAGTTAC+TGG + chr1_3:74299173-74299192 Msa0140140:CDS 45.0%
GTTGTTGCAGTTACTGGTGA+TGG + chr1_3:74299179-74299198 Msa0140140:CDS 45.0%
AGCAGATATTGGGCTTGCAA+TGG + chr1_3:74299229-74299248 Msa0140140:CDS 45.0%
GCAGATATTGGGCTTGCAAT+GGG + chr1_3:74299230-74299249 Msa0140140:CDS 45.0%
ATCGGTATGAAGACGTACCT+CGG - chr1_3:74299267-74299286 None:intergenic 45.0%
AAAAGTTGAACCGCAGTGAG+GGG - chr1_3:74299958-74299977 None:intergenic 45.0%
CTCATCATTAGGAGGTTCAG+TGG - chr1_3:74300025-74300044 None:intergenic 45.0%
!! TGAAAAGAGCACCAGTTGGT+AGG + chr1_3:74300049-74300068 Msa0140140:CDS 45.0%
CGTGATGTGGAGGAATATCA+CGG + chr1_3:74300092-74300111 Msa0140140:CDS 45.0%
GTGATGTGGAGGAATATCAC+GGG + chr1_3:74300093-74300112 Msa0140140:CDS 45.0%
TGATGTGGAGGAATATCACG+GGG + chr1_3:74300094-74300113 Msa0140140:CDS 45.0%
ATCTGGTTACTCCAGACAAG+AGG + chr1_3:74300141-74300160 Msa0140140:CDS 45.0%
!! AGCTTTTCATCTTGATGGCC+CGG + chr1_3:74300170-74300189 Msa0140140:CDS 45.0%
TGAGATCAGTTCCAGAGACA+TGG + chr1_3:74300482-74300501 Msa0140140:CDS 45.0%
! TAGAGGAGATGTGTTGGCAT+AGG - chr1_3:74300610-74300629 None:intergenic 45.0%
!! AGCTTTGAAGATGATCCCTG+TGG + chr1_3:74300689-74300708 Msa0140140:CDS 45.0%
!! GCTTTGAAGATGATCCCTGT+GGG + chr1_3:74300690-74300709 Msa0140140:CDS 45.0%
!! GGCAACTTTTAGAAGAGACG+AGG - chr1_3:74300799-74300818 None:intergenic 45.0%
!! CGGAAGAAGCACTTCAGAGA+TGG + chr1_3:74295042-74295061 Msa0140140:five_prime_UTR 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_3:74295447-74295466 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr1_3:74295451-74295470 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr1_3:74295453-74295472 None:intergenic 50.0%
TCCGTAGAAACCGGAAGTTC+TGG + chr1_3:74295733-74295752 Msa0140140:intron 50.0%
CTACGTGGTACCAGAACTTC+CGG - chr1_3:74295746-74295765 None:intergenic 50.0%
CAAACTAAGCATGGAAGGGC+AGG - chr1_3:74296146-74296165 None:intergenic 50.0%
CTGCCCTTCCATGCTTAGTT+TGG + chr1_3:74296144-74296163 Msa0140140:intron 50.0%
! AAGCGAGTACAGAGTACCAG+AGG + chr1_3:74296587-74296606 Msa0140140:five_prime_UTR 50.0%
! CCTGCAGCTTTAACTTCCTC+TGG - chr1_3:74296606-74296625 None:intergenic 50.0%
CCAGAGGAAGTTAAAGCTGC+AGG + chr1_3:74296603-74296622 Msa0140140:five_prime_UTR 50.0%
GAGGCAGGGACAATTGTTGA+TGG + chr1_3:74296645-74296664 Msa0140140:five_prime_UTR 50.0%
ATTCACTGAAAGTCCAGCCC+GGG + chr1_3:74296803-74296822 Msa0140140:five_prime_UTR 50.0%
GAGATCAAGTCCCTGCTGAT+GGG + chr1_3:74297141-74297160 Msa0140140:CDS 50.0%
GACACAAAAAGCCCATCAGC+AGG - chr1_3:74297155-74297174 None:intergenic 50.0%
!!! GCTGATGGGCTTTTTGTGTC+CGG + chr1_3:74297155-74297174 Msa0140140:CDS 50.0%
GCATCTTGCATGATCCATCC+TGG - chr1_3:74297277-74297296 None:intergenic 50.0%
CTGTTGGAATGAGAACCCAG+TGG + chr1_3:74297306-74297325 Msa0140140:CDS 50.0%
GTTGGAATGAGAACCCAGTG+GGG + chr1_3:74297308-74297327 Msa0140140:CDS 50.0%
GCAGGTAAAACTCAATGGCG+TGG + chr1_3:74297379-74297398 Msa0140140:CDS 50.0%
TTTAGCCGCAAGCTGCAAGA+AGG + chr1_3:74297470-74297489 Msa0140140:CDS 50.0%
AGCTGCAAGAAGGTTCCCAA+TGG + chr1_3:74297480-74297499 Msa0140140:CDS 50.0%
CATCACCAGACCATGTCCAT+TGG - chr1_3:74297499-74297518 None:intergenic 50.0%
! TAAGGCACTCGTCCGTCATT+TGG + chr1_3:74297643-74297662 Msa0140140:CDS 50.0%
ACCAACTGAGACTGCCATCT+TGG + chr1_3:74297919-74297938 Msa0140140:CDS 50.0%
TCCAAGATGGCAGTCTCAGT+TGG - chr1_3:74297923-74297942 None:intergenic 50.0%
GTTCTACAGCTTCCTGATGG+TGG + chr1_3:74298043-74298062 Msa0140140:CDS 50.0%
TGTGCTCTGTAACCACCATC+AGG - chr1_3:74298058-74298077 None:intergenic 50.0%
TGTAAGCAAGGCAAAGGGTC+CGG - chr1_3:74298216-74298235 None:intergenic 50.0%
GGTCGGCTGGTATTACAGTT+AGG + chr1_3:74298359-74298378 Msa0140140:CDS 50.0%
ACCGATGGTATGGCGATTGA+AGG + chr1_3:74298442-74298461 Msa0140140:CDS 50.0%
GCCTTCAATCGCCATACCAT+CGG - chr1_3:74298446-74298465 None:intergenic 50.0%
CACTCATTTCACGGAACTCC+GGG - chr1_3:74298468-74298487 None:intergenic 50.0%
GCACGCCAAAACTCAAACTC+TGG - chr1_3:74298608-74298627 None:intergenic 50.0%
!! TTTCTTTTAAGGGGTGGGGG+TGG + chr1_3:74298629-74298648 Msa0140140:intron 50.0%
!! TTCTTTTAAGGGGTGGGGGT+GGG + chr1_3:74298630-74298649 Msa0140140:intron 50.0%
GCCTGGAAGTAAAAGCTTGG+TGG + chr1_3:74299021-74299040 Msa0140140:intron 50.0%
AATGGCTCGATCTTCACCCA+TGG + chr1_3:74299112-74299131 Msa0140140:CDS 50.0%
!! AGAGCACCAGTTGGTAGGAA+AGG + chr1_3:74300054-74300073 Msa0140140:CDS 50.0%
GGAATCTCAGCACCCATGAA+AGG - chr1_3:74300365-74300384 None:intergenic 50.0%
TCAGTTCCAGAGACATGGAG+AGG + chr1_3:74300487-74300506 Msa0140140:CDS 50.0%
! AGCGTTTTCCTTGGAGTCCT+TGG + chr1_3:74300651-74300670 Msa0140140:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_3:74295439-74295458 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_3:74295438-74295457 Msa0140140:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_3:74295439-74295458 Msa0140140:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_3:74295445-74295464 Msa0140140:intron 55.0%
TTCACTGAAAGTCCAGCCCG+GGG + chr1_3:74296804-74296823 Msa0140140:five_prime_UTR 55.0%
! AAAGTCCAGCCCGGGGATTT+TGG + chr1_3:74296811-74296830 Msa0140140:five_prime_UTR 55.0%
! AAGTCCAGCCCGGGGATTTT+GGG + chr1_3:74296812-74296831 Msa0140140:five_prime_UTR 55.0%
AAAACCCAAAATCCCCGGGC+TGG - chr1_3:74296819-74296838 None:intergenic 55.0%
ATCCCATCCTGTGCACCCTT+AGG - chr1_3:74296933-74296952 None:intergenic 55.0%
! AAGGGTGCACAGGATGGGAT+TGG + chr1_3:74296933-74296952 Msa0140140:CDS 55.0%
ACAGTTCAGGTCACGCGGAA+TGG + chr1_3:74297056-74297075 Msa0140140:CDS 55.0%
GGAGATCAAGTCCCTGCTGA+TGG + chr1_3:74297140-74297159 Msa0140140:CDS 55.0%
GCTTGCGGCTAAATAGCCCT+TGG - chr1_3:74297463-74297482 None:intergenic 55.0%
GGGAACCTTCTTGCAGCTTG+CGG - chr1_3:74297478-74297497 None:intergenic 55.0%
GGTTCCCAATGGACATGGTC+TGG + chr1_3:74297491-74297510 Msa0140140:CDS 55.0%
CAACAACACCGGAGGTGAAG+TGG + chr1_3:74297859-74297878 Msa0140140:CDS 55.0%
AAGGGTCCGGAGAGCTTCAT+TGG - chr1_3:74298203-74298222 None:intergenic 55.0%
CAGACTCTCGAACACCAGGA+CGG - chr1_3:74298327-74298346 None:intergenic 55.0%
GCTACAGACTCTCGAACACC+AGG - chr1_3:74298331-74298350 None:intergenic 55.0%
GTAGCCATTTGTAGGTCGGC+TGG + chr1_3:74298346-74298365 Msa0140140:CDS 55.0%
TGGTATGGCGATTGAAGGCC+CGG + chr1_3:74298447-74298466 Msa0140140:CDS 55.0%
!! TCTTTTAAGGGGTGGGGGTG+GGG + chr1_3:74298631-74298650 Msa0140140:intron 55.0%
! AATGGGCATTGCTGGAACCG+AGG + chr1_3:74299247-74299266 Msa0140140:CDS 55.0%
!! CAGTGAGGGGAGCATTTCCT+GGG - chr1_3:74299945-74299964 None:intergenic 55.0%
AGGAAATGCTCCCCTCACTG+CGG + chr1_3:74299945-74299964 Msa0140140:intron 55.0%
!! ATGGGTGCTGAGATTCCCTG+TGG + chr1_3:74300368-74300387 Msa0140140:intron 55.0%
! GATTTGGAAGATGGCGGTGC+AGG - chr1_3:74300565-74300584 None:intergenic 55.0%
TTGGCATGCCAAGGACTCCA+AGG - chr1_3:74300662-74300681 None:intergenic 55.0%
GGAGTCCTTGGCATGCCAAT+TGG + chr1_3:74300663-74300682 Msa0140140:CDS 55.0%
CTGCACCAATTGGCATGCCA+AGG - chr1_3:74300671-74300690 None:intergenic 55.0%
AGAGAGAAGGCTAGACGCCG+TGG + chr1_3:74295265-74295284 Msa0140140:intron 60.0%
! TGGCCTAAGGGTGCACAGGA+TGG + chr1_3:74296927-74296946 Msa0140140:CDS 60.0%
! GGCCTAAGGGTGCACAGGAT+GGG + chr1_3:74296928-74296947 Msa0140140:CDS 60.0%
TCTCGAACACCAGGACGGAC+TGG - chr1_3:74298322-74298341 None:intergenic 60.0%
! GGGCTTGCAATGGGCATTGC+TGG + chr1_3:74299239-74299258 Msa0140140:CDS 60.0%
!! GCAGTGAGGGGAGCATTTCC+TGG - chr1_3:74299946-74299965 None:intergenic 60.0%
! AGGGTGGCCTAAGGGTGCAC+AGG + chr1_3:74296923-74296942 Msa0140140:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74294715 74301086 74294715 ID=Msa0140140;Name=Msa0140140
chr1_3 mRNA 74294715 74301086 74294715 ID=Msa0140140-mRNA-1;Parent=Msa0140140;Name=Msa0140140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=801|1|1|1|0.83|0.85|7|364|843
chr1_3 exon 74294715 74295164 74294715 ID=Msa0140140-mRNA-1:exon:25839;Parent=Msa0140140-mRNA-1
chr1_3 exon 74296435 74296489 74296435 ID=Msa0140140-mRNA-1:exon:25840;Parent=Msa0140140-mRNA-1
chr1_3 exon 74296574 74298522 74296574 ID=Msa0140140-mRNA-1:exon:25841;Parent=Msa0140140-mRNA-1
chr1_3 exon 74299110 74299268 74299110 ID=Msa0140140-mRNA-1:exon:25842;Parent=Msa0140140-mRNA-1
chr1_3 exon 74299670 74299841 74299670 ID=Msa0140140-mRNA-1:exon:25843;Parent=Msa0140140-mRNA-1
chr1_3 exon 74299947 74300245 74299947 ID=Msa0140140-mRNA-1:exon:25844;Parent=Msa0140140-mRNA-1
chr1_3 exon 74300474 74301086 74300474 ID=Msa0140140-mRNA-1:exon:25845;Parent=Msa0140140-mRNA-1
chr1_3 five_prime_UTR 74294715 74295164 74294715 ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3 five_prime_UTR 74296435 74296489 74296435 ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3 five_prime_UTR 74296574 74296869 74296574 ID=Msa0140140-mRNA-1:five_prime_utr;Parent=Msa0140140-mRNA-1
chr1_3 CDS 74296870 74298522 74296870 ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3 CDS 74299110 74299268 74299110 ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3 CDS 74299670 74299841 74299670 ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3 CDS 74299947 74300245 74299947 ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3 CDS 74300474 74300722 74300474 ID=Msa0140140-mRNA-1:cds;Parent=Msa0140140-mRNA-1
chr1_3 three_prime_UTR 74300723 74301086 74300723 ID=Msa0140140-mRNA-1:three_prime_utr;Parent=Msa0140140-mRNA-1
Gene Sequence

>Msa0140140

ATGATACTTGCGGTCTGTGCTTTTGTCTCTTTAGTGGTTGGCATAATAATGGAAGGGTGGCCTAAGGGTGCACAGGATGGGATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTTGTCACTGCCACTAGTGATTACAGACAATCATTGCAGTTTAAGGATCTAGATAAAGAGAAGAAGAAAATTACAGTTCAGGTCACGCGGAATGGATATAGACAGAAAATTTCAATATATGATCTACTTCCTGGTGATATTGTCCATCTTAATATCGGAGATCAAGTCCCTGCTGATGGGCTTTTTGTGTCCGGTTTCTCTGTATGTATAAATGAATCAAGTTTGACAGGAGAAAGTGAACCAGTGAACGTCAGTGACCTTAATCCTTTTCTTCTATCTGGAACAAAAGTCCAGGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGAACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGTGGAGATGATGAAACTCCCTTGCAGGTAAAACTCAATGGCGTGGCTACCATTATTGGAAAAATAGGCCTCTTTTTCGCTGTTGTGACTTTCTCAGTGTTGGTCCAAGGGCTATTTAGCCGCAAGCTGCAAGAAGGTTCCCAATGGACATGGTCTGGTGATGATGCAATGGAAATTGTGGAATTCTTTGCTATTGCTGTTACAATTGTTGTTGTTGCTGTTCCTGAAGGTTTACCTTTAGCTGTGACATTGAGCCTTGCTTTTGCCATGAAAAAAATGATGAACGATAAGGCACTCGTCCGTCATTTGGCTGCTTGTGAGACAATGGGATCTGCTACTACTATCTGCAGTGACAAGACTGGCACGTTAACTACAAACCATATGACTGTTGTAAAAGCTTGCATTTGTGGGAAGATCAAAGAGGTAAAGAGCTCCATCGACTCTTCTGATTTCTCATCTGATCTTCCTGATTCTGCTATAGCAATTCTACTTGAATCAATATTCAACAACACCGGAGGTGAAGTGGTCAAAAATGAAAATGGAAAGATTGAGATTCTGGGATCACCAACTGAGACTGCCATCTTGGAATTTGGGCTATCACTTGGTGGTGATTTCCACAAAGAACGACAAGCATCAAAACTTGTGAAAGTTGAACCATTTAATTCTATAAAGAAGCGCATGGGGGTAGTTCTACAGCTTCCTGATGGTGGTTACAGAGCACATTGCAAGGGCGCCTCTGAAATAATTCTTGCTGCATGTGACAAATTTGTAGACTCAAATGGCAAGATTGTTCCACTTGATGAAGACTCCATCAGTCACTTGAATGATACAATCGAAAAATTTGCCAATGAAGCTCTCCGGACCCTTTGCCTTGCTTACATTGATATTCATGATGAATTTTTAGTTGGAAGTCCTATTCCTATTAATGGTTACACTTGTGTAGGAATAGTGGGTATTAAAGATCCAGTCCGTCCTGGTGTTCGAGAGTCTGTAGCCATTTGTAGGTCGGCTGGTATTACAGTTAGGATGGTTACCGGAGACAACATAAATACTGCAAAGGCGATTGCTAGAGAATGTGGAATTTTAACCGATGGTATGGCGATTGAAGGCCCGGAGTTCCGTGAAATGAGTGAGAAGGAATTGCTTGATATCATTCCAAAAATTCAGGTAATGGCTCGATCTTCACCCATGGATAAGCATACCCTAGTGAAACACTTGAGGACAACATTTGAAGAGGTTGTTGCAGTTACTGGTGATGGTACAAATGATGCACCAGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTGCTGGAACCGAGGTAGCAAAAGAAAGTGCCGACGTAATAATACTAGATGATAACTTTTCAACTATCGTCACTGTAGCTAAATGGGGCCGTTCAGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATGTTGTTGCTTTGATTGTCAATTTCACTTCTGCTTGTTTGACAGGAAATGCTCCCCTCACTGCGGTTCAACTTTTATGGGTCAACATGATTATGGACACACTTGGAGCACTTGCACTTGCCACTGAACCTCCTAATGATGAGTTGATGAAAAGAGCACCAGTTGGTAGGAAAGGAAACTTTATCAGTAACGTGATGTGGAGGAATATCACGGGGCAGTCTATATATCAATTTGTCATAATCTGGTTACTCCAGACAAGAGGAAAAACAGCTTTTCATCTTGATGGCCCGGATAGTGATCTGATATTGAATACACTCATTTTCAATTCATTTGTATTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGACATGGAGAGGATAAATGTTTTTGAAGGTATCCTAAAGAATTATGTGTTCACAGCTGTACTCACCTGCACCGCCATCTTCCAAATCATAATTGTTGAATTCTTGGGCACCTATGCCAACACATCTCCTCTAAGTTTGAAACTGTGGTTCATTAGCGTTTTCCTTGGAGTCCTTGGCATGCCAATTGGTGCAGCTTTGAAGATGATCCCTGTGGGATCTGTCTAA
Protein sequence

>Msa0140140

MILAVCAFVSLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNGYRQKISIYDLLPGDIVHLNIGDQVPADGLFVSGFSVCINESSLTGESEPVNVSDLNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLQEGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKIKEVKSSIDSSDFSSDLPDSAIAILLESIFNNTGGEVVKNENGKIEILGSPTETAILEFGLSLGGDFHKERQASKLVKVEPFNSIKKRMGVVLQLPDGGYRAHCKGASEIILAACDKFVDSNGKIVPLDEDSISHLNDTIEKFANEALRTLCLAYIDIHDEFLVGSPIPINGYTCVGIVGIKDPVRPGVRESVAICRSAGITVRMVTGDNINTAKAIARECGILTDGMAIEGPEFREMSEKELLDIIPKIQVMARSSPMDKHTLVKHLRTTFEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRAPVGRKGNFISNVMWRNITGQSIYQFVIIWLLQTRGKTAFHLDGPDSDLILNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFTAVLTCTAIFQIIIVEFLGTYANTSPLSLKLWFISVFLGVLGMPIGAALKMIPVGSV*