AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932930 MtrunA17_Chr6g0449731 96.804 219 7 0 1 219 1 219 2.20e-155 429
Msa0932930 MtrunA17_Chr6g0449771 96.364 220 8 0 1 220 1 220 2.95e-155 429
Msa0932930 MtrunA17_Chr6g0449751 95.000 220 11 0 1 220 1 220 1.97e-153 424
Msa0932930 MtrunA17_Chr6g0449761 96.296 216 8 0 1 216 1 216 2.36e-153 425
Msa0932930 MtrunA17_Chr1g0189841 80.822 219 39 3 5 220 4 222 1.33e-125 354
Msa0932930 MtrunA17_Chr4g0007041 76.471 221 51 1 1 220 1 221 2.12e-121 343
Msa0932930 MtrunA17_Chr2g0285871 76.471 221 51 1 1 220 1 221 8.34e-121 342
Msa0932930 MtrunA17_Chr4g0007031 75.566 221 53 1 1 220 1 221 2.91e-120 340
Msa0932930 MtrunA17_Chr5g0419971 75.566 221 53 1 1 220 1 221 2.91e-120 340
Msa0932930 MtrunA17_Chr5g0419981 75.566 221 53 1 1 220 1 221 2.91e-120 340
Msa0932930 MtrunA17_Chr4g0007051 75.566 221 53 1 1 220 1 221 2.97e-120 340
Msa0932930 MtrunA17_Chr6g0449781 75.000 220 54 1 1 220 1 219 8.21e-114 324
Msa0932930 MtrunA17_Chr6g0449791 71.635 208 58 1 1 207 1 208 4.76e-104 299
Msa0932930 MtrunA17_Chr1g0156131 62.312 199 65 2 19 215 19 209 4.57e-84 248
Msa0932930 MtrunA17_Chr2g0292831 61.809 199 69 2 19 215 19 212 2.63e-83 246
Msa0932930 MtrunA17_Chr2g0292901 61.500 200 69 3 19 215 19 213 1.25e-80 239
Msa0932930 MtrunA17_Chr2g0292861 64.535 172 58 2 47 215 7 178 9.36e-76 226
Msa0932930 MtrunA17_Chr2g0292841 64.535 172 58 2 47 215 7 178 3.09e-74 222
Msa0932930 MtrunA17_Chr1g0193671 47.619 210 100 4 11 214 8 213 1.09e-59 187
Msa0932930 MtrunA17_Chr7g0271211 52.041 196 88 3 22 215 20 211 3.62e-57 180
Msa0932930 MtrunA17_Chr1g0193421 49.000 200 96 3 18 215 20 215 4.77e-56 177
Msa0932930 MtrunA17_Chr5g0414971 48.223 197 95 4 22 215 27 219 2.42e-53 171
Msa0932930 MtrunA17_Chr2g0292911 67.797 118 36 1 47 162 7 124 2.71e-53 167
Msa0932930 MtrunA17_Chr1g0210761 43.256 215 106 6 3 215 7 207 7.10e-48 156
Msa0932930 MtrunA17_Chr1g0178711 38.914 221 124 5 2 215 5 221 2.64e-44 147
Msa0932930 MtrunA17_Chr2g0300561 45.455 187 94 4 28 212 23 203 1.55e-42 142
Msa0932930 MtrunA17_Chr8g0344021 47.337 169 75 4 27 189 24 184 1.00e-41 140
Msa0932930 MtrunA17_Chr2g0300581 38.605 215 117 5 1 213 3 204 1.96e-38 132
Msa0932930 MtrunA17_Chr2g0300591 38.785 214 116 5 1 212 3 203 2.09e-38 132
Msa0932930 MtrunA17_Chr8g0335851 41.899 179 100 3 22 199 26 201 3.44e-35 124
Msa0932930 MtrunA17_Chr8g0343911 39.474 190 107 4 26 213 19 202 5.55e-35 123
Msa0932930 MtrunA17_Chr8g0343934 37.688 199 116 4 18 215 14 205 6.24e-34 120
Msa0932930 MtrunA17_Chr3g0084531 38.693 199 114 4 18 215 14 205 9.48e-34 120
Msa0932930 MtrunA17_Chr8g0343954 39.683 189 106 4 28 215 24 205 2.77e-33 119
Msa0932930 MtrunA17_Chr2g0313961 38.191 199 115 4 18 215 14 205 1.47e-32 117
Msa0932930 MtrunA17_Chr3g0084521 37.441 211 118 5 6 215 7 204 2.79e-32 116
Msa0932930 MtrunA17_Chr2g0297231 37.688 199 116 4 18 215 14 205 4.93e-32 115
Msa0932930 MtrunA17_Chr3g0084511 36.967 211 119 5 6 215 7 204 5.77e-32 115
Msa0932930 MtrunA17_Chr2g0302171 37.441 211 119 5 6 215 7 205 9.49e-32 115
Msa0932930 MtrunA17_Chr2g0297241 37.688 199 116 4 18 215 14 205 1.31e-31 114
Msa0932930 MtrunA17_Chr3g0130241 33.649 211 135 4 3 211 69 276 1.07e-30 114
Msa0932930 MtrunA17_Chr8g0343961 37.173 191 112 4 26 215 22 205 2.17e-30 111
Msa0932930 MtrunA17_Chr8g0343921 39.474 190 105 6 28 215 22 203 3.64e-30 110
Msa0932930 MtrunA17_Chr4g0003361 39.080 174 99 4 43 215 34 201 4.47e-30 110
Msa0932930 MtrunA17_Chr2g0301611 36.683 199 118 4 18 215 14 205 4.74e-30 110
Msa0932930 MtrunA17_Chr8g0344051 37.500 216 114 6 6 215 8 208 7.49e-30 110
Msa0932930 MtrunA17_Chr8g0344041 36.316 190 112 4 28 215 27 209 4.55e-29 108
Msa0932930 MtrunA17_Chr2g0286171 34.101 217 132 6 1 215 1 208 3.74e-28 105
Msa0932930 MtrunA17_Chr8g0344031 34.123 211 131 4 6 215 4 207 1.04e-27 104
Msa0932930 MtrunA17_Chr5g0411961 34.171 199 123 4 18 215 14 205 2.54e-27 103
Msa0932930 MtrunA17_Chr2g0302541 36.126 191 114 4 26 215 22 205 6.75e-27 102
Msa0932930 MtrunA17_Chr4g0012651 36.126 191 114 4 26 215 22 205 7.42e-27 102
Msa0932930 MtrunA17_Chr7g0217811 35.602 191 115 4 26 215 22 205 1.16e-26 102
Msa0932930 MtrunA17_Chr4g0026191 39.860 143 81 3 74 215 67 205 2.05e-26 101
Msa0932930 MtrunA17_Chr4g0026201 39.860 143 81 3 74 215 67 205 2.37e-26 100
Msa0932930 MtrunA17_Chr2g0321581 35.023 217 110 8 6 215 12 204 3.29e-26 100
Msa0932930 MtrunA17_Chr2g0321591 35.023 217 110 8 6 215 12 204 4.25e-26 100
Msa0932930 MtrunA17_Chr2g0321601 34.597 211 119 7 6 215 11 203 3.17e-25 98.2
Msa0932930 MtrunA17_Chr3g0115141 35.450 189 112 5 28 215 27 206 4.64e-25 97.8
Msa0932930 MtrunA17_Chr2g0292881 71.930 57 16 0 93 149 1 57 6.20e-23 87.8
Msa0932930 MtrunA17_Chr3g0084551 32.487 197 117 7 18 212 14 196 9.94e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932930 AT5G39120.1 64.384 219 74 3 1 215 1 219 5.12e-93 272
Msa0932930 AT5G39150.1 63.927 219 75 3 1 215 1 219 3.25e-92 270
Msa0932930 AT5G39180.1 63.927 219 75 3 1 215 1 219 5.80e-92 269
Msa0932930 AT5G39110.1 64.186 215 74 2 4 215 6 220 2.16e-91 268
Msa0932930 AT5G38940.1 66.837 196 63 1 22 215 26 221 3.01e-90 265
Msa0932930 AT5G38940.2 66.837 196 63 1 22 215 50 245 5.16e-90 265
Msa0932930 AT5G38930.1 67.172 198 63 1 20 215 24 221 2.04e-89 263
Msa0932930 AT5G39130.1 65.829 199 64 3 20 215 22 219 2.78e-88 259
Msa0932930 AT3G05950.1 66.507 209 65 4 11 215 14 221 2.92e-88 260
Msa0932930 AT5G39160.1 66.332 199 63 3 20 215 22 219 2.97e-88 259
Msa0932930 AT5G39190.1 66.332 199 63 3 20 215 22 219 5.92e-88 259
Msa0932930 AT5G38910.1 63.014 219 77 4 1 215 1 219 1.85e-87 258
Msa0932930 AT5G38960.1 64.179 201 69 2 18 215 22 222 5.33e-87 256
Msa0932930 AT4G14630.1 61.111 216 80 3 4 215 7 222 2.50e-85 252
Msa0932930 AT5G39160.3 63.819 199 64 3 20 215 22 215 1.87e-83 247
Msa0932930 AT3G04200.1 62.963 216 73 4 6 215 8 222 8.12e-82 243
Msa0932930 AT3G04150.1 58.108 222 85 5 1 215 1 221 1.54e-75 228
Msa0932930 AT3G04190.1 59.314 204 79 3 15 215 19 221 6.52e-75 226
Msa0932930 AT5G39190.2 56.881 218 70 4 1 215 1 197 4.01e-74 223
Msa0932930 AT5G39160.2 56.422 218 71 4 1 215 1 197 1.02e-73 222
Msa0932930 AT3G04150.2 54.701 234 87 5 1 215 1 234 2.96e-73 222
Msa0932930 AT3G04170.1 56.744 215 85 5 5 215 8 218 1.14e-71 218
Msa0932930 AT3G04180.1 56.373 204 85 3 15 215 19 221 4.07e-71 216
Msa0932930 AT5G38910.2 51.142 219 66 5 1 215 1 182 5.69e-61 189
Msa0932930 AT1G09560.1 50.761 197 91 3 22 216 24 216 9.49e-58 182
Msa0932930 AT1G02335.1 48.485 198 96 3 20 215 22 215 1.09e-57 182
Msa0932930 AT3G62020.1 47.170 212 105 4 7 215 8 215 3.90e-56 178
Msa0932930 AT1G18970.1 46.479 213 106 4 7 217 14 220 8.61e-56 177
Msa0932930 AT3G05930.1 46.364 220 108 5 1 215 1 215 8.92e-56 177
Msa0932930 AT1G18980.1 46.759 216 105 5 4 217 13 220 2.97e-54 173
Msa0932930 AT5G26700.1 46.411 209 93 6 11 215 16 209 4.47e-53 170
Msa0932930 AT3G62020.2 48.333 180 88 3 39 215 9 186 6.36e-49 159
Msa0932930 AT1G10460.1 41.709 199 109 5 22 215 19 215 1.15e-47 156
Msa0932930 AT3G10080.1 41.294 201 110 4 19 215 23 219 2.94e-44 148
Msa0932930 AT3G10080.2 41.089 202 111 4 18 215 93 290 1.61e-43 148
Msa0932930 AT5G20630.1 43.976 166 87 3 26 189 22 183 5.84e-39 134
Msa0932930 AT5G61750.1 41.848 184 97 4 6 187 8 183 1.76e-37 130
Msa0932930 AT1G74820.1 37.156 218 121 5 8 215 14 225 6.38e-36 126
Msa0932930 AT1G72610.1 38.095 189 109 4 26 212 19 201 2.40e-32 117
Msa0932930 AT5G38950.1 62.500 64 24 0 144 207 2 65 4.23e-20 82.0

Find 49 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.057045 6_3:+1345828 Msa0932930:CDS
CTTGTTTGTGACAGCCTTCT+TGG 0.126065 6_3:+1345125 Msa0932930:CDS
TAGTGATTACACCTGGATTT+TGG 0.253401 6_3:-1345809 None:intergenic
TTCACTTTCAATTGAATGTT+GGG 0.335332 6_3:+1345751 Msa0932930:CDS
AGTATACATACCACCATTCT+TGG 0.343040 6_3:-1345217 None:intergenic
ATACTAGGACTAAACACTTT+AGG 0.375557 6_3:+1345537 Msa0932930:CDS
TCATTTGCAGTAGCAAGCTT+TGG 0.385081 6_3:-1345438 None:intergenic
TTGGAGGGTACTCTTTATGT+TGG 0.391607 6_3:+1345645 Msa0932930:CDS
GGAAATGCAGTTGTCATTGC+TGG 0.408325 6_3:+1345777 Msa0932930:CDS
AGTATCTCATTAACTGTAAC+CGG 0.413639 6_3:-1345519 None:intergenic
CCACTATGTTATTGTCCACT+TGG 0.415021 6_3:-1345893 None:intergenic
TGAAAGTGAACGAGGCCAAT+TGG 0.423442 6_3:-1345738 None:intergenic
TGGAGGGTACTCTTTATGTT+GGG 0.430272 6_3:+1345646 Msa0932930:CDS
TTTCAATTGAATGTTGGGTA+TGG 0.435827 6_3:+1345756 Msa0932930:CDS
ACAAAAGTCTTGTAAAGGGC+TGG 0.441843 6_3:-1345178 None:intergenic
GATGTCTTCGTGTTTCCAAT+TGG 0.447280 6_3:+1345723 Msa0932930:CDS
CTATTGCTAATGCTGTATTT+GGG 0.459960 6_3:+1345829 Msa0932930:CDS
GTTCACTTTCAATTGAATGT+TGG 0.460722 6_3:+1345750 Msa0932930:CDS
ATTGTCCACTTGGAAAGCTT+TGG 0.467417 6_3:-1345883 None:intergenic
TCGAATTGACTTCGCTGCTA+GGG 0.469213 6_3:+1345572 Msa0932930:CDS
ATAAGAATCTCAGTGGCTCT+AGG 0.470121 6_3:-1345618 None:intergenic
TTCTTCTACTCAGTGAAAGA+AGG 0.477471 6_3:+1345462 Msa0932930:CDS
TGAGATTCTTATCGTGTTGG+AGG 0.479548 6_3:+1345629 Msa0932930:CDS
GCCACACAAAAGTCTTGTAA+AGG 0.484515 6_3:-1345183 None:intergenic
CCACACAAAAGTCTTGTAAA+GGG 0.505298 6_3:-1345182 None:intergenic
CTCGAATTGACTTCGCTGCT+AGG 0.514360 6_3:+1345571 Msa0932930:CDS
CAAAAGTCTTGTAAAGGGCT+GGG 0.515376 6_3:-1345177 None:intergenic
TTGTAAAGGGCTGGGATCAA+AGG 0.516879 6_3:-1345169 None:intergenic
CACTGAGATTCTTATCGTGT+TGG 0.542092 6_3:+1345626 Msa0932930:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.548107 6_3:-1345606 None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG 0.548530 6_3:-1345617 None:intergenic
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6_3:+1345798 Msa0932930:CDS
GTTACAGTTAATGAGATACT+AGG 0.558743 6_3:+1345522 Msa0932930:CDS
ACAAGATGCTAAAGCCAAGA+AGG 0.574992 6_3:-1345139 None:intergenic
TGTGAATGGCAAATTCTGCA+AGG 0.584711 6_3:+1345413 Msa0932930:CDS
CGAATTGACTTCGCTGCTAG+GGG 0.586864 6_3:+1345573 Msa0932930:CDS
GAGATTCTTATCGTGTTGGA+GGG 0.612927 6_3:+1345630 Msa0932930:CDS
CCAAGTGGACAATAACATAG+TGG 0.613774 6_3:+1345893 Msa0932930:CDS
TTAGCAATAGTGATTACACC+TGG 0.624375 6_3:-1345816 None:intergenic
ATCAATGATACCAAGAATGG+TGG 0.631783 6_3:+1345207 Msa0932930:CDS
GCTATCAATGATACCAAGAA+TGG 0.640005 6_3:+1345204 Msa0932930:CDS
ATCACAAAAGTACTCAACAA+AGG 0.644517 6_3:+1345699 Msa0932930:CDS
CATTCAATTGAAAGTGAACG+AGG 0.657003 6_3:-1345746 None:intergenic
AGGGCTGGGATCAAAGGCAA+AGG 0.658426 6_3:-1345163 None:intergenic
GGAAACACGTCAAATCCACT+TGG 0.662851 6_3:+1345483 Msa0932930:CDS
TCTCACCAAAGCTTTCCAAG+TGG 0.665947 6_3:+1345878 Msa0932930:CDS
ACTTGGTTCAAAAGTGACAC+CGG 0.669513 6_3:+1345500 Msa0932930:CDS
GCTCTAGGGTGAGTATGTGG+AGG 0.673911 6_3:-1345603 None:intergenic
CAACACGATAAGAATCTCAG+TGG 0.757588 6_3:-1345625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATACGTATATAAG+TGG + chr6_3:1345347-1345366 Msa0932930:intron 15.0%
!! TTAATATATACGTATATAAG+TGG + chr6_3:1345347-1345366 Msa0932930:intron 15.0%
!! TACGTATATATTAATGTTGT+CGG - chr6_3:1345341-1345360 None:intergenic 20.0%
!! TACGTATATATTAATGTTGT+CGG - chr6_3:1345341-1345360 None:intergenic 20.0%
! TCATAGTTCAATCAGTTTAA+CGG - chr6_3:1345288-1345307 None:intergenic 25.0%
! ACTATGATACAAAAGTTTCA+CGG + chr6_3:1345301-1345320 Msa0932930:intron 25.0%
! TTCACTTTCAATTGAATGTT+GGG + chr6_3:1345751-1345770 Msa0932930:CDS 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG - chr6_3:1345861-1345880 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG + chr6_3:1345916-1345935 Msa0932930:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG + chr6_3:1345917-1345936 Msa0932930:CDS 25.0%
! TCATAGTTCAATCAGTTTAA+CGG - chr6_3:1345288-1345307 None:intergenic 25.0%
! ACTATGATACAAAAGTTTCA+CGG + chr6_3:1345301-1345320 Msa0932930:intron 25.0%
! TTCACTTTCAATTGAATGTT+GGG + chr6_3:1345751-1345770 Msa0932930:CDS 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG - chr6_3:1345861-1345880 None:intergenic 25.0%
! ACAATCTTCAAAAACAATTC+TGG + chr6_3:1345916-1345935 Msa0932930:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG + chr6_3:1345917-1345936 Msa0932930:CDS 25.0%
CATAGTTCAATCAGTTTAAC+GGG - chr6_3:1345287-1345306 None:intergenic 30.0%
AGTATCTCATTAACTGTAAC+CGG - chr6_3:1345522-1345541 None:intergenic 30.0%
GTTACAGTTAATGAGATACT+AGG + chr6_3:1345522-1345541 Msa0932930:CDS 30.0%
ATACTAGGACTAAACACTTT+AGG + chr6_3:1345537-1345556 Msa0932930:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG + chr6_3:1345699-1345718 Msa0932930:CDS 30.0%
GTTCACTTTCAATTGAATGT+TGG + chr6_3:1345750-1345769 Msa0932930:CDS 30.0%
TTTCAATTGAATGTTGGGTA+TGG + chr6_3:1345756-1345775 Msa0932930:CDS 30.0%
ACTATTGCTAATGCTGTATT+TGG + chr6_3:1345828-1345847 Msa0932930:CDS 30.0%
CTATTGCTAATGCTGTATTT+GGG + chr6_3:1345829-1345848 Msa0932930:CDS 30.0%
CATAGTTCAATCAGTTTAAC+GGG - chr6_3:1345287-1345306 None:intergenic 30.0%
AGTATCTCATTAACTGTAAC+CGG - chr6_3:1345522-1345541 None:intergenic 30.0%
GTTACAGTTAATGAGATACT+AGG + chr6_3:1345522-1345541 Msa0932930:CDS 30.0%
ATACTAGGACTAAACACTTT+AGG + chr6_3:1345537-1345556 Msa0932930:CDS 30.0%
!! ATCACAAAAGTACTCAACAA+AGG + chr6_3:1345699-1345718 Msa0932930:CDS 30.0%
GTTCACTTTCAATTGAATGT+TGG + chr6_3:1345750-1345769 Msa0932930:CDS 30.0%
TTTCAATTGAATGTTGGGTA+TGG + chr6_3:1345756-1345775 Msa0932930:CDS 30.0%
ACTATTGCTAATGCTGTATT+TGG + chr6_3:1345828-1345847 Msa0932930:CDS 30.0%
CTATTGCTAATGCTGTATTT+GGG + chr6_3:1345829-1345848 Msa0932930:CDS 30.0%
! CCACACAAAAGTCTTGTAAA+GGG - chr6_3:1345185-1345204 None:intergenic 35.0%
GCTATCAATGATACCAAGAA+TGG + chr6_3:1345204-1345223 Msa0932930:CDS 35.0%
ATCAATGATACCAAGAATGG+TGG + chr6_3:1345207-1345226 Msa0932930:CDS 35.0%
AGTATACATACCACCATTCT+TGG - chr6_3:1345220-1345239 None:intergenic 35.0%
! TGTTGTGCAGTTTTTGTGAA+TGG + chr6_3:1345399-1345418 Msa0932930:intron 35.0%
TTCTTCTACTCAGTGAAAGA+AGG + chr6_3:1345462-1345481 Msa0932930:CDS 35.0%
! TGAGTACTTTTGTGATGAGA+CGG - chr6_3:1345695-1345714 None:intergenic 35.0%
CATTCAATTGAAAGTGAACG+AGG - chr6_3:1345749-1345768 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG - chr6_3:1345812-1345831 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG - chr6_3:1345819-1345838 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG + chr6_3:1345920-1345939 Msa0932930:CDS 35.0%
! CCACACAAAAGTCTTGTAAA+GGG - chr6_3:1345185-1345204 None:intergenic 35.0%
GCTATCAATGATACCAAGAA+TGG + chr6_3:1345204-1345223 Msa0932930:CDS 35.0%
ATCAATGATACCAAGAATGG+TGG + chr6_3:1345207-1345226 Msa0932930:CDS 35.0%
AGTATACATACCACCATTCT+TGG - chr6_3:1345220-1345239 None:intergenic 35.0%
! TGTTGTGCAGTTTTTGTGAA+TGG + chr6_3:1345399-1345418 Msa0932930:intron 35.0%
TTCTTCTACTCAGTGAAAGA+AGG + chr6_3:1345462-1345481 Msa0932930:CDS 35.0%
! TGAGTACTTTTGTGATGAGA+CGG - chr6_3:1345695-1345714 None:intergenic 35.0%
CATTCAATTGAAAGTGAACG+AGG - chr6_3:1345749-1345768 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG - chr6_3:1345812-1345831 None:intergenic 35.0%
TTAGCAATAGTGATTACACC+TGG - chr6_3:1345819-1345838 None:intergenic 35.0%
TCTTCAAAAACAATTCTGGG+TGG + chr6_3:1345920-1345939 Msa0932930:CDS 35.0%
ACAAGATGCTAAAGCCAAGA+AGG - chr6_3:1345142-1345161 None:intergenic 40.0%
! CAAAAGTCTTGTAAAGGGCT+GGG - chr6_3:1345180-1345199 None:intergenic 40.0%
! ACAAAAGTCTTGTAAAGGGC+TGG - chr6_3:1345181-1345200 None:intergenic 40.0%
! CCCTTTACAAGACTTTTGTG+TGG + chr6_3:1345182-1345201 Msa0932930:CDS 40.0%
! GCCACACAAAAGTCTTGTAA+AGG - chr6_3:1345186-1345205 None:intergenic 40.0%
TGTGAATGGCAAATTCTGCA+AGG + chr6_3:1345413-1345432 Msa0932930:CDS 40.0%
TCATTTGCAGTAGCAAGCTT+TGG - chr6_3:1345441-1345460 None:intergenic 40.0%
ACTTGGTTCAAAAGTGACAC+CGG + chr6_3:1345500-1345519 Msa0932930:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG - chr6_3:1345620-1345639 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG - chr6_3:1345621-1345640 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG - chr6_3:1345628-1345647 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG + chr6_3:1345626-1345645 Msa0932930:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG + chr6_3:1345629-1345648 Msa0932930:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG + chr6_3:1345630-1345649 Msa0932930:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG + chr6_3:1345645-1345664 Msa0932930:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG + chr6_3:1345646-1345665 Msa0932930:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG - chr6_3:1345687-1345706 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG + chr6_3:1345723-1345742 Msa0932930:CDS 40.0%
ATTGTCCACTTGGAAAGCTT+TGG - chr6_3:1345886-1345905 None:intergenic 40.0%
CCACTATGTTATTGTCCACT+TGG - chr6_3:1345896-1345915 None:intergenic 40.0%
CCAAGTGGACAATAACATAG+TGG + chr6_3:1345893-1345912 Msa0932930:CDS 40.0%
ACAAGATGCTAAAGCCAAGA+AGG - chr6_3:1345142-1345161 None:intergenic 40.0%
! CAAAAGTCTTGTAAAGGGCT+GGG - chr6_3:1345180-1345199 None:intergenic 40.0%
! ACAAAAGTCTTGTAAAGGGC+TGG - chr6_3:1345181-1345200 None:intergenic 40.0%
! CCCTTTACAAGACTTTTGTG+TGG + chr6_3:1345182-1345201 Msa0932930:CDS 40.0%
! GCCACACAAAAGTCTTGTAA+AGG - chr6_3:1345186-1345205 None:intergenic 40.0%
TGTGAATGGCAAATTCTGCA+AGG + chr6_3:1345413-1345432 Msa0932930:CDS 40.0%
TCATTTGCAGTAGCAAGCTT+TGG - chr6_3:1345441-1345460 None:intergenic 40.0%
ACTTGGTTCAAAAGTGACAC+CGG + chr6_3:1345500-1345519 Msa0932930:CDS 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG - chr6_3:1345620-1345639 None:intergenic 40.0%
ATAAGAATCTCAGTGGCTCT+AGG - chr6_3:1345621-1345640 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG - chr6_3:1345628-1345647 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG + chr6_3:1345626-1345645 Msa0932930:CDS 40.0%
TGAGATTCTTATCGTGTTGG+AGG + chr6_3:1345629-1345648 Msa0932930:CDS 40.0%
GAGATTCTTATCGTGTTGGA+GGG + chr6_3:1345630-1345649 Msa0932930:CDS 40.0%
!! TTGGAGGGTACTCTTTATGT+TGG + chr6_3:1345645-1345664 Msa0932930:CDS 40.0%
!! TGGAGGGTACTCTTTATGTT+GGG + chr6_3:1345646-1345665 Msa0932930:CDS 40.0%
! TTTGTGATGAGACGGTTTTC+TGG - chr6_3:1345687-1345706 None:intergenic 40.0%
GATGTCTTCGTGTTTCCAAT+TGG + chr6_3:1345723-1345742 Msa0932930:CDS 40.0%
ATTGTCCACTTGGAAAGCTT+TGG - chr6_3:1345886-1345905 None:intergenic 40.0%
CCACTATGTTATTGTCCACT+TGG - chr6_3:1345896-1345915 None:intergenic 40.0%
CCAAGTGGACAATAACATAG+TGG + chr6_3:1345893-1345912 Msa0932930:CDS 40.0%
CTTGTTTGTGACAGCCTTCT+TGG + chr6_3:1345125-1345144 Msa0932930:CDS 45.0%
TTGTAAAGGGCTGGGATCAA+AGG - chr6_3:1345172-1345191 None:intergenic 45.0%
GGAAACACGTCAAATCCACT+TGG + chr6_3:1345483-1345502 Msa0932930:CDS 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG - chr6_3:1345501-1345520 None:intergenic 45.0%
! TCGAATTGACTTCGCTGCTA+GGG + chr6_3:1345572-1345591 Msa0932930:CDS 45.0%
TGAAAGTGAACGAGGCCAAT+TGG - chr6_3:1345741-1345760 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG + chr6_3:1345777-1345796 Msa0932930:CDS 45.0%
TCTCACCAAAGCTTTCCAAG+TGG + chr6_3:1345878-1345897 Msa0932930:CDS 45.0%
CTTGTTTGTGACAGCCTTCT+TGG + chr6_3:1345125-1345144 Msa0932930:CDS 45.0%
TTGTAAAGGGCTGGGATCAA+AGG - chr6_3:1345172-1345191 None:intergenic 45.0%
GGAAACACGTCAAATCCACT+TGG + chr6_3:1345483-1345502 Msa0932930:CDS 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG - chr6_3:1345501-1345520 None:intergenic 45.0%
! TCGAATTGACTTCGCTGCTA+GGG + chr6_3:1345572-1345591 Msa0932930:CDS 45.0%
TGAAAGTGAACGAGGCCAAT+TGG - chr6_3:1345741-1345760 None:intergenic 45.0%
GGAAATGCAGTTGTCATTGC+TGG + chr6_3:1345777-1345796 Msa0932930:CDS 45.0%
TCTCACCAAAGCTTTCCAAG+TGG + chr6_3:1345878-1345897 Msa0932930:CDS 45.0%
! CTCGAATTGACTTCGCTGCT+AGG + chr6_3:1345571-1345590 Msa0932930:CDS 50.0%
! CGAATTGACTTCGCTGCTAG+GGG + chr6_3:1345573-1345592 Msa0932930:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG + chr6_3:1345798-1345817 Msa0932930:CDS 50.0%
! CTCGAATTGACTTCGCTGCT+AGG + chr6_3:1345571-1345590 Msa0932930:CDS 50.0%
! CGAATTGACTTCGCTGCTAG+GGG + chr6_3:1345573-1345592 Msa0932930:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG + chr6_3:1345798-1345817 Msa0932930:CDS 50.0%
AGGGCTGGGATCAAAGGCAA+AGG - chr6_3:1345166-1345185 None:intergenic 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG - chr6_3:1345606-1345625 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG - chr6_3:1345609-1345628 None:intergenic 55.0%
AGGGCTGGGATCAAAGGCAA+AGG - chr6_3:1345166-1345185 None:intergenic 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG - chr6_3:1345606-1345625 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG - chr6_3:1345609-1345628 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 1345111 1345953 1345111 ID=Msa0932930;Name=Msa0932930
chr6_3 mRNA 1345111 1345953 1345111 ID=Msa0932930-mRNA-1;Parent=Msa0932930;Name=Msa0932930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|220
chr6_3 exon 1345111 1345228 1345111 ID=Msa0932930-mRNA-1:exon:479;Parent=Msa0932930-mRNA-1
chr6_3 exon 1345409 1345953 1345409 ID=Msa0932930-mRNA-1:exon:480;Parent=Msa0932930-mRNA-1
chr6_3 CDS 1345111 1345228 1345111 ID=Msa0932930-mRNA-1:cds;Parent=Msa0932930-mRNA-1
chr6_3 CDS 1345409 1345953 1345409 ID=Msa0932930-mRNA-1:cds;Parent=Msa0932930-mRNA-1
Gene Sequence

>Msa0932930

ATGAAGACTTCTTACTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCCAGCCCTTTACAAGACTTTTGTGTGGCTATCAATGATACCAAGAATGGTGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACTGCAAATGATTTCTTCTACTCAGTGAAAGAAGGAAACACGTCAAATCCACTTGGTTCAAAAGTGACACCGGTTACAGTTAATGAGATACTAGGACTAAACACTTTAGGTATCTCTCTTGCTCGAATTGACTTCGCTGCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCGTTCACTTTCAATTGAATGTTGGGTATGGAAATGCAGTTGTCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG

Protein sequence

>Msa0932930

MKTSYLFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFAARGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLVHFQLNVGYGNAVVIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN*