AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024650 MtrunA17_Chr1g0178931 94.269 349 19 1 1 349 1 348 0.0 660
Msa0024650 MtrunA17_Chr1g0178941 76.418 335 70 4 23 349 26 359 0.0 526
Msa0024650 MtrunA17_Chr7g0266061 61.728 324 117 4 23 340 23 345 3.51e-152 432
Msa0024650 MtrunA17_Chr1g0178961 78.539 219 46 1 132 349 1 219 1.83e-125 359
Msa0024650 MtrunA17_Chr1g0198381 51.780 309 137 5 38 340 2 304 4.32e-110 323
Msa0024650 MtrunA17_Chr1g0198351 43.544 333 175 5 15 340 18 344 1.21e-100 301
Msa0024650 MtrunA17_Chr1g0198391 41.791 335 150 7 38 340 33 354 4.00e-86 264
Msa0024650 MtrunA17_Chr1g0198401 39.925 268 152 3 87 349 8 271 1.69e-70 221
Msa0024650 MtrunA17_Chr1g0178951 75.926 108 23 2 23 128 3 109 3.99e-51 165
Msa0024650 MtrunA17_Chr8g0344941 28.571 350 223 12 9 339 14 355 8.63e-36 133
Msa0024650 MtrunA17_Chr8g0349321 31.613 310 186 11 39 331 38 338 3.27e-35 132
Msa0024650 MtrunA17_Chr2g0301641 30.449 312 189 12 39 329 44 348 3.72e-34 129
Msa0024650 MtrunA17_Chr3g0077581 29.310 348 211 11 7 329 5 342 3.07e-33 126
Msa0024650 MtrunA17_Chr3g0131321 30.864 324 175 14 39 330 35 341 1.68e-32 125
Msa0024650 MtrunA17_Chr7g0275291 28.652 356 208 13 7 331 11 351 5.22e-31 120
Msa0024650 MtrunA17_Chr8g0349341 30.990 313 184 12 39 331 38 338 5.63e-31 120
Msa0024650 MtrunA17_Chr4g0017431 28.221 326 193 12 39 335 32 345 3.23e-30 118
Msa0024650 MtrunA17_Chr5g0438631 28.329 353 214 14 17 344 9 347 1.58e-28 113
Msa0024650 MtrunA17_Chr8g0349301 31.379 290 170 12 39 310 38 316 2.35e-28 112
Msa0024650 MtrunA17_Chr1g0156911 27.869 366 224 15 9 349 5 355 4.04e-28 112
Msa0024650 MtrunA17_Chr1g0156921 26.954 371 238 14 1 348 4 364 4.43e-28 112
Msa0024650 MtrunA17_Chr8g0344931 29.446 343 202 15 13 329 4 332 8.06e-28 111
Msa0024650 MtrunA17_Chr3g0099151 27.003 337 205 12 31 339 80 403 1.01e-27 112
Msa0024650 MtrunA17_Chr1g0198361 42.636 129 70 3 149 274 3 130 3.27e-27 105
Msa0024650 MtrunA17_Chr1g0189901 27.108 332 202 13 34 339 27 344 4.90e-27 109
Msa0024650 MtrunA17_Chr2g0285001 27.760 317 190 14 39 333 34 333 1.28e-26 108
Msa0024650 MtrunA17_Chr1g0189891 27.778 360 204 19 10 339 4 337 1.29e-26 108
Msa0024650 MtrunA17_Chr3g0120861 28.529 333 206 11 39 349 39 361 2.73e-26 107
Msa0024650 MtrunA17_Chr3g0099161 26.488 336 207 13 31 339 85 407 3.99e-26 108
Msa0024650 MtrunA17_Chr4g0057991 26.331 357 228 10 7 337 10 357 4.31e-26 107
Msa0024650 MtrunA17_Chr7g0275001 25.294 340 217 13 33 347 20 347 1.53e-25 105
Msa0024650 MtrunA17_Chr2g0294301 28.846 312 195 11 40 331 37 341 2.00e-25 105
Msa0024650 MtrunA17_Chr2g0283511 26.836 354 227 11 17 341 10 360 2.06e-25 105
Msa0024650 MtrunA17_Chr3g0099231 25.526 333 213 12 31 339 21 342 2.19e-25 105
Msa0024650 MtrunA17_Chr2g0285061 28.438 320 185 13 40 331 34 337 3.00e-25 104
Msa0024650 MtrunA17_Chr5g0438621 26.471 340 217 14 12 329 5 333 3.29e-25 104
Msa0024650 MtrunA17_Chr5g0396511 29.102 323 173 16 40 328 48 348 4.50e-25 104
Msa0024650 MtrunA17_Chr3g0086641 27.350 351 200 15 13 331 15 342 5.76e-25 103
Msa0024650 MtrunA17_Chr5g0420811 26.765 340 219 12 13 336 6 331 6.18e-25 103
Msa0024650 MtrunA17_Chr2g0283501 26.480 321 205 8 39 331 32 349 6.64e-25 103
Msa0024650 MtrunA17_Chr2g0283481 26.462 325 207 12 39 335 48 368 1.07e-24 103
Msa0024650 MtrunA17_Chr7g0275011 25.862 348 211 14 8 329 11 337 1.18e-24 103
Msa0024650 MtrunA17_Chr8g0347751 25.526 333 197 11 39 331 37 358 1.23e-24 103
Msa0024650 MtrunA17_Chr5g0434621 28.349 321 195 13 40 338 27 334 1.66e-24 102
Msa0024650 MtrunA17_Chr3g0077571 28.344 314 188 12 39 330 31 329 1.95e-24 102
Msa0024650 MtrunA17_Chr2g0283191 27.371 369 215 18 1 336 9 357 3.49e-24 101
Msa0024650 MtrunA17_Chr4g0060811 25.915 328 205 12 40 342 29 343 4.19e-24 101
Msa0024650 MtrunA17_Chr7g0226911 26.016 369 227 13 10 339 7 368 6.25e-24 101
Msa0024650 MtrunA17_Chr1g0182811 25.758 330 207 12 36 339 31 348 6.57e-24 100
Msa0024650 MtrunA17_Chr1g0156891 27.217 327 204 12 39 342 44 359 6.68e-24 100
Msa0024650 MtrunA17_Chr1g0156901 25.895 363 233 15 9 346 18 369 1.55e-23 100
Msa0024650 MtrunA17_Chr1g0189931 25.627 359 222 15 7 339 6 345 1.70e-23 99.8
Msa0024650 MtrunA17_Chr4g0068441 29.129 333 199 14 40 347 37 357 2.17e-23 99.8
Msa0024650 MtrunA17_Chr8g0371491 26.271 354 228 13 5 335 2 345 2.28e-23 99.4
Msa0024650 MtrunA17_Chr7g0254461 24.665 373 221 14 12 339 18 375 2.45e-23 99.8
Msa0024650 MtrunA17_Chr7g0275021 25.862 348 215 13 8 329 7 337 2.99e-23 99.4
Msa0024650 MtrunA17_Chr5g0432101 27.879 330 198 15 39 340 34 351 2.99e-23 99.0
Msa0024650 MtrunA17_Chr4g0027521 28.076 317 193 12 39 330 28 334 3.32e-23 99.0
Msa0024650 MtrunA17_Chr3g0092131 26.316 323 210 10 40 342 25 339 3.63e-23 99.0
Msa0024650 MtrunA17_Chr7g0226931 26.371 383 225 14 7 339 7 382 5.19e-23 99.0
Msa0024650 MtrunA17_Chr5g0438641 26.509 381 216 18 1 348 1 350 5.27e-23 98.2
Msa0024650 MtrunA17_Chr8g0381581 24.267 375 238 12 2 339 6 371 8.87e-23 98.2
Msa0024650 MtrunA17_Chr5g0437421 24.242 330 217 10 33 337 27 348 9.27e-23 97.8
Msa0024650 MtrunA17_Chr8g0374101 25.938 320 198 14 40 330 39 348 1.08e-22 97.8
Msa0024650 MtrunA17_Chr8g0349331 27.815 302 178 9 39 331 36 306 1.15e-22 97.1
Msa0024650 MtrunA17_Chr3g0142921 27.576 330 207 16 39 346 37 356 1.43e-22 97.1
Msa0024650 MtrunA17_Chr2g0320671 27.190 331 209 12 39 347 31 351 1.94e-22 96.7
Msa0024650 MtrunA17_Chr3g0085231 26.934 349 204 17 7 330 1 323 2.11e-22 96.7
Msa0024650 MtrunA17_Chr4g0046151 24.654 361 227 16 3 336 11 353 2.97e-22 96.3
Msa0024650 MtrunA17_Chr6g0457921 24.923 325 213 13 37 339 28 343 1.07e-21 94.7
Msa0024650 MtrunA17_Chr3g0112821 26.506 332 199 14 35 335 27 344 1.40e-21 94.4
Msa0024650 MtrunA17_Chr1g0156931 23.708 329 223 12 39 348 42 361 1.59e-21 94.4
Msa0024650 MtrunA17_Chr5g0405821 26.912 353 216 16 9 333 14 352 1.69e-21 94.4
Msa0024650 MtrunA17_Chr2g0283531 25.770 357 232 10 13 339 3 356 3.45e-21 93.6
Msa0024650 MtrunA17_Chr3g0105401 26.284 331 215 12 39 348 29 351 5.29e-21 92.4
Msa0024650 MtrunA17_Chr8g0380031 28.115 313 184 14 39 330 85 377 6.35e-21 93.2
Msa0024650 MtrunA17_Chr7g0274991 25.698 358 213 16 1 328 1 335 6.47e-21 92.4
Msa0024650 MtrunA17_Chr5g0405831 25.786 318 203 13 39 333 44 351 7.34e-21 92.4
Msa0024650 MtrunA17_Chr8g0380041 25.496 353 207 16 9 331 9 335 7.76e-21 92.4
Msa0024650 MtrunA17_Chr6g0450711 25.000 364 228 12 1 329 82 435 1.16e-20 92.8
Msa0024650 MtrunA17_Chr1g0160031 26.048 334 206 13 39 339 40 365 1.71e-20 91.7
Msa0024650 MtrunA17_Chr1g0157001 26.814 317 202 11 43 339 41 347 3.25e-20 90.5
Msa0024650 MtrunA17_Chr2g0284991 29.102 323 181 16 39 335 34 334 4.41e-20 90.5
Msa0024650 MtrunA17_Chr4g0008851 24.709 344 217 14 9 329 13 337 8.46e-20 89.4
Msa0024650 MtrunA17_Chr3g0093031 26.488 336 199 15 35 335 27 349 1.12e-19 89.0
Msa0024650 MtrunA17_Chr1g0159971 24.340 341 209 11 37 339 46 375 1.43e-19 89.0
Msa0024650 MtrunA17_Chr7g0215961 24.860 358 212 14 8 339 7 333 1.45e-19 88.6
Msa0024650 MtrunA17_Chr3g0085881 28.435 313 181 14 39 330 34 324 1.98e-19 88.2
Msa0024650 MtrunA17_Chr3g0096551 25.714 350 204 13 35 339 26 364 3.14e-19 87.8
Msa0024650 MtrunA17_Chr2g0301541 25.444 338 197 12 28 335 27 339 5.18e-19 87.0
Msa0024650 MtrunA17_Chr1g0160011 24.665 373 239 14 1 340 4 367 6.79e-19 87.0
Msa0024650 MtrunA17_Chr2g0284921 27.879 330 189 15 39 337 35 346 7.60e-19 86.7
Msa0024650 MtrunA17_Chr1g0198411 73.585 53 12 1 38 90 32 82 9.63e-19 80.1
Msa0024650 MtrunA17_Chr1g0160101 25.444 338 206 13 39 339 43 371 1.30e-18 86.3
Msa0024650 MtrunA17_Chr7g0271551 25.974 308 209 6 39 331 37 340 1.71e-18 85.5
Msa0024650 MtrunA17_Chr2g0301581 25.148 338 198 11 28 335 27 339 3.41e-18 84.7
Msa0024650 MtrunA17_Chr8g0352901 24.923 325 207 11 39 331 29 348 6.48e-18 84.0
Msa0024650 MtrunA17_Chr8g0371481 24.927 341 221 14 32 348 35 364 6.89e-18 84.0
Msa0024650 MtrunA17_Chr1g0159981 23.691 363 236 13 11 340 21 375 9.73e-18 83.6
Msa0024650 MtrunA17_Chr2g0317261 25.994 327 196 14 37 335 29 337 1.16e-17 83.2
Msa0024650 MtrunA17_Chr6g0450731 24.444 360 216 15 1 329 1 335 1.32e-17 82.8
Msa0024650 MtrunA17_Chr2g0284951 27.244 312 188 13 39 330 34 326 1.97e-17 82.4
Msa0024650 MtrunA17_Chr1g0159991 23.955 359 231 13 15 340 16 365 2.08e-17 82.4
Msa0024650 MtrunA17_Chr3g0142941 27.103 321 201 13 39 339 48 355 2.76e-17 82.0
Msa0024650 MtrunA17_Chr6g0450701 24.217 351 223 11 12 331 16 354 3.55e-17 82.0
Msa0024650 MtrunA17_Chr8g0341001 25.568 352 189 13 39 347 33 354 3.82e-17 81.6
Msa0024650 MtrunA17_Chr2g0317271 25.994 327 196 14 37 335 29 337 6.77e-17 80.9
Msa0024650 MtrunA17_Chr5g0444401 24.214 318 205 12 39 331 29 335 7.69e-17 80.9
Msa0024650 MtrunA17_Chr2g0330781 25.000 336 211 12 39 347 32 353 7.87e-17 80.5
Msa0024650 MtrunA17_Chr0c01g0489581 25.688 327 197 14 37 335 29 337 1.95e-16 79.3
Msa0024650 MtrunA17_Chr0c01g0489571 25.688 327 197 14 37 335 29 337 2.17e-16 79.3
Msa0024650 MtrunA17_Chr2g0284941 25.786 318 172 14 39 332 34 311 2.18e-16 79.3
Msa0024650 MtrunA17_Chr3g0104821 24.779 339 204 16 35 335 41 366 2.93e-16 79.3
Msa0024650 MtrunA17_Chr8g0371471 24.118 340 224 14 32 348 35 363 4.65e-16 78.6
Msa0024650 MtrunA17_Chr7g0226941 25.153 326 206 11 39 331 34 354 7.86e-16 77.8
Msa0024650 MtrunA17_Chr8g0370951 25.552 317 201 13 39 329 32 339 6.81e-15 75.1
Msa0024650 MtrunA17_Chr8g0370981 20.812 394 245 13 15 348 23 409 5.68e-13 69.3
Msa0024650 MtrunA17_Chr2g0301591 26.250 240 154 6 28 253 27 257 6.79e-13 68.2
Msa0024650 MtrunA17_Chr7g0273101 24.157 356 217 13 23 339 17 358 1.79e-12 67.8
Msa0024650 MtrunA17_Chr1g0191461 25.070 359 212 11 13 330 8 350 4.33e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024650 AT5G03610.1 55.263 342 144 5 7 341 11 350 6.61e-131 378
Msa0024650 AT3G09930.2 48.780 328 159 5 22 341 21 347 7.66e-109 322
Msa0024650 AT3G09930.1 48.780 328 159 5 22 341 21 347 7.66e-109 322
Msa0024650 AT2G36325.1 39.368 348 188 10 8 339 10 350 4.17e-76 238
Msa0024650 AT5G03600.2 39.583 336 180 10 13 339 25 346 1.23e-74 234
Msa0024650 AT5G03600.1 40.566 318 167 9 31 339 7 311 7.14e-74 231
Msa0024650 AT5G03590.3 36.897 290 133 9 59 341 7 253 5.14e-56 184
Msa0024650 AT5G03590.1 32.526 289 116 8 59 341 7 222 1.95e-44 152
Msa0024650 AT1G53920.1 30.595 353 223 11 8 343 18 365 9.29e-40 144
Msa0024650 AT1G28640.1 29.598 348 208 10 14 330 11 352 1.49e-33 128
Msa0024650 AT5G03590.2 39.791 191 107 7 9 195 7 193 5.98e-32 119
Msa0024650 AT5G41890.1 29.261 352 204 14 10 331 12 348 1.59e-31 122
Msa0024650 AT1G33811.1 28.045 353 198 13 13 329 10 342 5.52e-30 118
Msa0024650 AT5G08460.1 28.771 358 215 16 4 330 9 357 9.14e-30 117
Msa0024650 AT1G20130.1 27.410 332 210 9 39 345 205 530 1.29e-29 119
Msa0024650 AT1G20130.2 27.410 332 210 9 39 345 185 510 1.29e-29 119
Msa0024650 AT2G31540.1 27.711 332 204 12 36 340 29 351 1.68e-28 114
Msa0024650 AT1G58430.1 27.353 340 214 13 27 342 23 353 1.68e-28 114
Msa0024650 AT1G28670.1 27.841 352 220 8 14 335 11 358 1.74e-28 114
Msa0024650 AT1G06990.1 27.327 333 203 11 39 345 38 357 2.12e-28 113
Msa0024650 AT1G20120.1 30.063 316 189 14 39 332 79 384 2.34e-28 114
Msa0024650 AT1G28650.1 27.019 359 215 11 13 335 12 359 2.64e-28 114
Msa0024650 AT2G30310.1 26.380 326 210 10 39 342 35 352 3.25e-28 113
Msa0024650 AT2G27360.1 28.152 341 187 12 37 335 32 356 3.36e-28 113
Msa0024650 AT1G71691.2 30.312 320 173 15 39 329 56 354 6.81e-28 112
Msa0024650 AT1G59406.1 27.451 357 220 14 15 347 7 348 2.01e-27 110
Msa0024650 AT1G59030.1 27.451 357 220 14 15 347 7 348 2.01e-27 110
Msa0024650 AT1G58725.1 27.451 357 220 14 15 347 7 348 2.01e-27 110
Msa0024650 AT2G40250.1 27.976 336 188 12 35 335 33 349 3.91e-27 110
Msa0024650 AT5G42170.1 25.786 318 211 9 39 339 51 360 8.01e-27 109
Msa0024650 AT2G04570.1 27.628 333 207 12 39 348 29 350 1.03e-26 108
Msa0024650 AT2G19060.1 28.710 310 195 11 40 335 32 329 1.12e-26 108
Msa0024650 AT1G54030.1 26.974 304 193 9 36 329 50 334 2.44e-26 108
Msa0024650 AT4G01130.1 27.731 357 212 12 10 331 11 356 2.81e-26 108
Msa0024650 AT5G33370.1 25.688 327 209 13 36 339 28 343 4.38e-26 107
Msa0024650 AT1G54020.2 28.614 339 207 15 11 334 7 325 4.39e-26 107
Msa0024650 AT5G18430.1 27.619 315 198 12 37 329 27 333 7.92e-26 106
Msa0024650 AT1G54010.1 27.576 330 213 13 12 329 13 328 1.91e-25 105
Msa0024650 AT1G71250.1 27.389 314 194 13 39 329 42 344 2.15e-25 105
Msa0024650 AT3G14820.1 27.500 320 208 10 39 342 33 344 2.18e-25 105
Msa0024650 AT1G75890.3 27.378 347 217 13 10 332 48 383 2.54e-25 105
Msa0024650 AT2G30220.1 25.723 346 225 11 19 342 16 351 2.56e-25 105
Msa0024650 AT1G75890.2 27.378 347 217 13 10 332 19 354 2.69e-25 105
Msa0024650 AT5G40990.1 28.115 313 197 10 39 329 38 344 4.75e-25 104
Msa0024650 AT1G20132.1 26.946 334 212 10 36 347 59 382 1.18e-24 103
Msa0024650 AT1G28570.1 25.215 349 228 10 13 332 9 353 1.51e-24 103
Msa0024650 AT1G54000.1 26.667 330 216 12 12 329 13 328 1.60e-24 103
Msa0024650 AT1G58520.3 26.970 330 201 12 39 347 31 341 2.10e-24 102
Msa0024650 AT1G58525.1 26.970 330 201 12 39 347 31 341 2.10e-24 102
Msa0024650 AT3G14220.1 29.167 312 196 14 39 337 33 332 2.36e-24 102
Msa0024650 AT1G28610.2 26.590 346 196 13 37 341 30 358 2.38e-24 102
Msa0024650 AT1G28590.1 26.100 341 205 11 37 341 35 364 4.22e-24 102
Msa0024650 AT2G24560.1 24.159 327 216 11 39 342 35 352 4.97e-24 101
Msa0024650 AT5G45960.1 27.920 351 207 15 21 340 30 365 5.48e-24 101
Msa0024650 AT3G14225.2 27.974 311 200 10 39 329 38 344 8.02e-24 101
Msa0024650 AT1G75930.1 25.352 355 211 14 6 335 5 330 1.04e-23 100
Msa0024650 AT3G04290.1 25.610 328 208 13 36 339 27 342 1.18e-23 100
Msa0024650 AT4G28780.1 26.844 339 214 13 32 347 25 352 1.55e-23 100
Msa0024650 AT5G33370.2 29.289 239 149 9 36 255 28 265 1.82e-23 99.8
Msa0024650 AT1G28600.1 25.893 336 199 11 37 335 30 352 1.90e-23 100
Msa0024650 AT1G75880.2 26.722 363 235 13 6 346 19 372 1.91e-23 100
Msa0024650 AT1G20135.1 25.444 338 212 10 15 335 12 326 2.43e-23 99.4
Msa0024650 AT3G53100.1 26.048 334 209 13 39 347 30 350 2.99e-23 99.4
Msa0024650 AT1G75880.1 26.648 364 235 13 6 346 19 373 3.01e-23 99.8
Msa0024650 AT1G29660.1 26.923 364 213 19 1 335 1 340 3.12e-23 99.4
Msa0024650 AT5G37690.1 24.852 338 224 12 16 331 1 330 3.55e-23 99.4
Msa0024650 AT2G03980.2 25.455 330 217 13 39 348 44 364 5.40e-23 99.0
Msa0024650 AT2G03980.3 25.455 330 217 13 39 348 44 364 5.40e-23 99.0
Msa0024650 AT2G03980.1 25.455 330 217 13 39 348 44 364 5.40e-23 99.0
Msa0024650 AT2G03980.4 25.455 330 217 13 39 348 44 364 5.40e-23 99.0
Msa0024650 AT3G14210.1 26.807 332 203 14 35 349 33 341 6.31e-23 99.0
Msa0024650 AT4G10950.2 27.219 338 195 14 39 345 72 389 9.03e-23 98.6
Msa0024650 AT2G19050.1 27.673 318 203 12 40 344 33 336 9.34e-23 97.8
Msa0024650 AT5G45910.1 26.462 359 227 10 16 339 5 361 9.81e-23 98.2
Msa0024650 AT3G14225.1 26.814 317 204 9 39 331 38 350 1.13e-22 98.2
Msa0024650 AT1G28580.1 25.069 363 219 10 6 332 11 356 1.84e-22 97.8
Msa0024650 AT3G50400.1 25.000 320 204 12 40 331 36 347 2.35e-22 97.1
Msa0024650 AT1G71691.3 30.970 268 146 12 39 280 56 310 4.76e-22 95.1
Msa0024650 AT5G45950.1 26.912 353 221 12 11 347 20 351 5.32e-22 95.9
Msa0024650 AT1G29670.1 27.246 345 206 15 12 330 9 334 6.11e-22 95.9
Msa0024650 AT4G10950.1 26.822 343 186 15 39 345 72 385 9.28e-22 95.9
Msa0024650 AT1G29670.2 27.171 357 212 16 1 331 69 403 1.33e-21 95.5
Msa0024650 AT1G31550.2 26.549 339 205 11 37 341 35 363 1.59e-21 95.1
Msa0024650 AT1G71120.1 23.529 323 226 9 39 347 32 347 1.82e-21 94.4
Msa0024650 AT5G22810.1 25.978 358 235 11 13 347 8 358 2.27e-21 94.0
Msa0024650 AT4G26790.1 25.513 341 200 13 39 346 30 349 3.51e-21 93.6
Msa0024650 AT4G26790.2 25.513 341 200 13 39 346 30 349 3.51e-21 93.6
Msa0024650 AT2G23540.1 25.843 356 220 16 8 330 15 359 3.73e-21 94.0
Msa0024650 AT1G74460.1 25.758 330 203 12 40 342 25 339 4.22e-21 93.6
Msa0024650 AT5G15720.1 25.633 316 199 12 39 329 31 335 4.30e-21 93.6
Msa0024650 AT1G23500.1 26.124 356 207 12 10 335 3 332 4.48e-21 93.2
Msa0024650 AT1G75900.1 25.076 331 217 12 39 348 44 364 6.66e-21 92.8
Msa0024650 AT1G28660.1 25.779 353 225 9 14 335 11 357 6.68e-21 93.2
Msa0024650 AT3G43570.1 25.496 353 204 13 13 347 8 319 7.38e-21 92.0
Msa0024650 AT1G73610.1 25.284 352 216 10 4 335 7 331 7.44e-21 92.4
Msa0024650 AT1G67830.1 24.332 337 213 9 39 339 31 361 1.20e-20 92.4
Msa0024650 AT2G19010.1 27.362 307 193 12 39 330 31 322 1.99e-20 91.3
Msa0024650 AT2G42990.1 24.412 340 216 14 14 329 9 331 3.74e-20 90.5
Msa0024650 AT1G53940.2 26.837 313 201 10 39 329 40 346 3.77e-20 90.9
Msa0024650 AT2G19010.2 27.362 307 193 12 39 330 61 352 3.95e-20 90.9
Msa0024650 AT5G14450.1 28.049 328 194 15 39 331 42 362 7.88e-20 90.1
Msa0024650 AT5G45670.1 24.340 341 222 13 13 330 6 333 1.09e-19 89.4
Msa0024650 AT5G55050.1 23.881 335 218 12 39 346 40 364 1.14e-19 89.4
Msa0024650 AT2G19050.2 29.876 241 152 9 40 267 33 269 1.47e-19 87.8
Msa0024650 AT1G28660.2 25.496 353 225 9 14 335 11 356 1.53e-19 89.4
Msa0024650 AT1G31550.1 26.844 339 201 13 37 341 35 360 1.84e-19 89.0
Msa0024650 AT1G54030.2 27.200 250 157 8 37 276 51 285 2.06e-19 87.8
Msa0024650 AT3G43550.1 29.514 288 171 13 15 280 8 285 3.83e-19 86.7
Msa0024650 AT1G75920.2 26.479 355 218 13 7 339 1 334 5.44e-19 87.0
Msa0024650 AT1G56670.1 23.295 352 233 8 7 335 13 350 6.01e-19 87.4
Msa0024650 AT3G16370.1 25.378 331 210 12 39 344 31 349 6.56e-19 87.0
Msa0024650 AT5G03820.2 25.970 335 210 13 39 347 62 384 1.11e-18 86.7
Msa0024650 AT5G03820.1 25.970 335 210 13 39 347 34 356 1.37e-18 86.3
Msa0024650 AT3G26430.1 26.113 337 207 11 39 339 32 362 3.31e-18 85.1
Msa0024650 AT5G37690.2 23.964 338 219 13 16 331 1 322 7.10e-18 84.0
Msa0024650 AT2G24560.2 24.911 281 188 9 39 298 35 313 1.58e-17 82.4
Msa0024650 AT4G01130.2 27.181 298 179 10 10 280 11 297 1.81e-17 82.8
Msa0024650 AT3G27950.1 25.926 351 227 13 16 339 10 354 2.25e-17 82.8
Msa0024650 AT5G03810.1 24.377 361 230 14 12 347 10 352 2.64e-17 82.4
Msa0024650 AT5G15720.2 26.792 265 167 10 39 280 31 291 6.46e-17 80.9
Msa0024650 AT4G18970.1 24.841 314 202 12 40 330 30 332 7.49e-17 81.3
Msa0024650 AT4G18970.2 24.367 316 201 11 40 330 30 332 8.06e-17 81.3
Msa0024650 AT1G75910.1 25.231 325 200 12 39 339 29 334 1.16e-16 80.5
Msa0024650 AT1G53940.1 27.820 266 165 9 39 283 40 299 3.11e-16 78.6
Msa0024650 AT4G30140.1 25.987 304 195 11 40 329 35 322 9.38e-16 77.8
Msa0024650 AT5G63170.1 23.794 311 203 9 39 332 29 322 9.61e-16 77.8
Msa0024650 AT1G54790.3 24.731 372 225 11 9 339 4 361 5.06e-15 75.9
Msa0024650 AT1G71691.1 27.459 244 134 11 112 329 27 253 5.62e-15 74.7
Msa0024650 AT1G09390.1 23.446 354 228 10 8 335 11 347 1.16e-14 74.7
Msa0024650 AT4G16230.1 28.696 230 141 9 7 218 3 227 2.15e-14 72.4
Msa0024650 AT1G54020.1 25.806 248 164 9 96 334 3 239 1.32e-13 70.9
Msa0024650 AT1G54020.5 25.806 248 164 9 96 334 3 239 1.32e-13 70.9
Msa0024650 AT1G54020.3 25.806 248 164 9 96 334 3 239 1.32e-13 70.9
Msa0024650 AT1G56670.2 22.744 277 190 5 8 267 14 283 3.56e-12 66.6
Msa0024650 AT4G01130.3 26.562 192 124 5 155 331 81 270 5.91e-12 65.9
Msa0024650 AT2G04020.2 25.243 309 163 16 39 329 44 302 7.62e-12 65.9
Msa0024650 AT3G14210.2 26.761 213 129 9 148 349 17 213 1.97e-11 63.9
Msa0024650 AT2G04020.1 26.887 212 133 10 39 233 44 250 4.32e-11 63.2

Find 90 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATTTGAGTTGTCATATT+TGG 0.176525 1_1:+47315800 None:intergenic
CTTGGCTTCTTGGTTTAATT+TGG 0.178730 1_1:+47315297 None:intergenic
TCAAACGATCCTTGATATTA+TGG 0.179018 1_1:+47315206 None:intergenic
TGGTGTGATCCTTGGCTTCT+TGG 0.198536 1_1:+47315287 None:intergenic
ATCCGGAATCAAGTTTCTTT+TGG 0.200030 1_1:-47315099 Msa0024650:CDS
ATACAAAGAAGCCAAGTTTA+AGG 0.227648 1_1:+47314903 None:intergenic
AAATAATGTTAAGAAATATT+TGG 0.229415 1_1:-47315131 Msa0024650:CDS
AACAAAATGATGCAAATAAA+TGG 0.273261 1_1:+47314972 None:intergenic
CACCAATCCCTCACAAATTC+AGG 0.309817 1_1:-47315907 Msa0024650:CDS
ATGTTGAGAGAAGGAAAATA+AGG 0.314493 1_1:+47318984 None:intergenic
CCGTATTTCAAATAATGTTT+AGG 0.330993 1_1:+47315875 None:intergenic
TTCTCTTAAACCCTATGCTT+TGG 0.332248 1_1:+47315449 None:intergenic
AGAAGCTCTAGTACAAAATA+TGG 0.346043 1_1:+47315008 None:intergenic
CCTAAACATTATTTGAAATA+CGG 0.358872 1_1:-47315875 Msa0024650:CDS
CCTTATGGCATAACCTTTCC+CGG 0.367441 1_1:-47318199 Msa0024650:CDS
ATTGCTTATGTCTCTGTTGC+TGG 0.376749 1_1:-47315719 Msa0024650:CDS
AGAAAATATGTAGGATTATG+AGG 0.393725 1_1:+47319029 None:intergenic
TGGTCACGGATTGGTTCAAT+AGG 0.406353 1_1:+47315317 None:intergenic
TCCCAAAAGAAACTTGATTC+CGG 0.406703 1_1:+47315097 None:intergenic
GTATTTGATACATTTACTTC+AGG 0.408426 1_1:-47315824 Msa0024650:CDS
CCGGGAAAGGTTATGCCATA+AGG 0.417887 1_1:+47318199 None:intergenic
TTGAATGCTAAAATAATTGT+TGG 0.418892 1_1:-47314805 None:intergenic
CATTCCATCCAGCTTGTGTT+GGG 0.422271 1_1:+47315065 None:intergenic
TCCTTGATATTATGGCTTGA+AGG 0.432887 1_1:+47315214 None:intergenic
TGTTAAGTTATCCTTAAACT+TGG 0.433185 1_1:-47314914 Msa0024650:three_prime_UTR
GGTTCATGGAAAGAACCTTA+TGG 0.453293 1_1:-47318214 Msa0024650:CDS
CTGATGCTTGTACTTCTCTC+AGG 0.463742 1_1:-47318793 Msa0024650:intron
AATCATTACTTGGCCACAAA+TGG 0.467719 1_1:-47315686 Msa0024650:CDS
CTAAACATTATTTGAAATAC+GGG 0.470412 1_1:-47315874 Msa0024650:CDS
TACATGTGATTTCCTTTCAA+AGG 0.470958 1_1:-47314877 Msa0024650:three_prime_UTR
GGGTTTAAGAGAATTGTTGT+AGG 0.471266 1_1:-47315439 Msa0024650:CDS
AAAACCTGCGGGAAGATTCT+CGG 0.475078 1_1:-47318176 Msa0024650:CDS
GCATTCCATCCAGCTTGTGT+TGG 0.477061 1_1:+47315064 None:intergenic
GGTTTAATTTGGTCACGGAT+TGG 0.477253 1_1:+47315308 None:intergenic
AGAGAAACGTGGCCAAGACT+TGG 0.477614 1_1:+47319069 None:intergenic
GGAGACTCTTATGTTGATAC+CGG 0.484084 1_1:-47318259 Msa0024650:CDS
TTCTTGGTTTAATTTGGTCA+CGG 0.493249 1_1:+47315303 None:intergenic
AACTTTGCATATGGTGGTAC+AGG 0.496157 1_1:-47315848 Msa0024650:CDS
AAATGACTACAATCATTACT+TGG 0.497754 1_1:-47315696 Msa0024650:CDS
CTGCTTACTCCCGCGCAACA+TGG 0.506122 1_1:+47315181 None:intergenic
TGTAAAGGTGGTGTGATCCT+TGG 0.506168 1_1:+47315279 None:intergenic
TTGATTCATCTCCAAAGCAT+AGG 0.508012 1_1:-47315460 Msa0024650:CDS
TACGGGATGAACTTTGCATA+TGG 0.509580 1_1:-47315857 Msa0024650:CDS
TTCCTGAATTTGTGAGGGAT+TGG 0.510692 1_1:+47315905 None:intergenic
TGATTCATCTCCAAAGCATA+GGG 0.512776 1_1:-47315459 Msa0024650:CDS
TATAATGAGTTGGAGAAGAA+AGG 0.513061 1_1:-47315037 Msa0024650:CDS
CCTTGATATTATGGCTTGAA+GGG 0.516932 1_1:+47315215 None:intergenic
ACAACTGAAGCAATGAAAGA+TGG 0.522350 1_1:+47315502 None:intergenic
ACCTTTCCCGGAAAACCTGC+GGG 0.522743 1_1:-47318187 Msa0024650:CDS
GGATTGCACCCAACACAAGC+TGG 0.525339 1_1:-47315073 Msa0024650:CDS
GGCCACAAATGGCTCTCTCC+CGG 0.526173 1_1:-47315675 Msa0024650:intron
GAACTCTGAAGAAAATATGT+AGG 0.528017 1_1:+47319020 None:intergenic
GTCTTGAATGAGTTGGTTGA+AGG 0.528258 1_1:+47315775 None:intergenic
CCCTTCAAGCCATAATATCA+AGG 0.529260 1_1:-47315215 Msa0024650:CDS
TCCACATTACATCCTTTGAA+AGG 0.529983 1_1:+47314865 None:intergenic
TGTTGAGAGAAGGAAAATAA+GGG 0.530179 1_1:+47318985 None:intergenic
TACCGGGAGAGAGCCATTTG+TGG 0.536907 1_1:+47315673 None:intergenic
CAATGTTCCTGAATTTGTGA+GGG 0.549183 1_1:+47315900 None:intergenic
TAAATGTACTATTGCAACGT+TGG 0.549562 1_1:+47315365 None:intergenic
TGATATTATGGCTTGAAGGG+TGG 0.554035 1_1:+47315218 None:intergenic
GTAAGCAGTCAGTATAATTG+TGG 0.561837 1_1:-47315166 Msa0024650:CDS
TAAGGTTCTTTCCATGAACC+AGG 0.564705 1_1:+47318217 None:intergenic
ATACATTGTCTTGAATGAGT+TGG 0.567893 1_1:+47315768 None:intergenic
GCTTTGGAGATGAATCAAAT+CGG 0.568789 1_1:+47315465 None:intergenic
CAAATTAAACCAAGAAGCCA+AGG 0.572389 1_1:-47315296 Msa0024650:CDS
CGTTTGAAACCATGTTGCGC+GGG 0.574724 1_1:-47315190 Msa0024650:CDS
TCCTTCAAAACTAGGCACCT+TGG 0.574769 1_1:-47318879 Msa0024650:five_prime_UTR
GAATGCTGTATATAATGAGT+TGG 0.576438 1_1:-47315047 Msa0024650:CDS
TCCTTTCAAAGGATGTAATG+TGG 0.580302 1_1:-47314866 Msa0024650:three_prime_UTR
CCGTCCGAGAATCTTCCCGC+AGG 0.582012 1_1:+47318172 None:intergenic
TGCACCCAACACAAGCTGGA+TGG 0.589106 1_1:-47315069 Msa0024650:CDS
ATAACTATGATGTTGAGAGA+AGG 0.589710 1_1:+47318975 None:intergenic
AACCTTTCCCGGAAAACCTG+CGG 0.591627 1_1:-47318188 Msa0024650:CDS
ATTGTTAGGGCTGCAAGCTG+AGG 0.595633 1_1:-47318329 Msa0024650:intron
AAATACAATTGAATGAACAA+TGG 0.603442 1_1:+47318950 None:intergenic
ACAATGTTCCTGAATTTGTG+AGG 0.612556 1_1:+47315899 None:intergenic
AATGTCTAGAATTGTAAAGG+TGG 0.614447 1_1:+47315267 None:intergenic
GAGAGAAGGAAAATAAGGGT+TGG 0.615653 1_1:+47318989 None:intergenic
TCGTTTGAAACCATGTTGCG+CGG 0.622178 1_1:-47315191 Msa0024650:CDS
GAGGATTGAGCAGTGGTCTG+AGG 0.625641 1_1:+47315391 None:intergenic
GGGATGAACTTTGCATATGG+TGG 0.628835 1_1:-47315854 Msa0024650:CDS
GTAGGTGCTTTACAACCACT+TGG 0.634865 1_1:-47315421 Msa0024650:CDS
GCTTGAAGGGTGGTTCAACA+CGG 0.661923 1_1:+47315228 None:intergenic
ACTATTGCAACGTTGGAACG+AGG 0.664844 1_1:+47315372 None:intergenic
AATAGCTATGAAAATGACCA+AGG 0.674457 1_1:+47318862 None:intergenic
TTGGAACGAGGATTGAGCAG+TGG 0.684303 1_1:+47315384 None:intergenic
CCTGCGGGAAGATTCTCGGA+CGG 0.710075 1_1:-47318172 Msa0024650:CDS
GTCTGAGGAAGACATCCAAG+TGG 0.739269 1_1:+47315406 None:intergenic
GGTTGTTATGAAGAGCTACG+AGG 0.769990 1_1:+47315338 None:intergenic
ATAGTGAAAGGAGAGAAACG+TGG 0.805186 1_1:+47319058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAGAAAAATCAAT+GGG + chr1_1:47315490-47315509 None:intergenic 10.0%
!! TATTAATTAAGAAAAATCAA+TGG + chr1_1:47315491-47315510 None:intergenic 10.0%
!! ATAAATAGAGAAATATAATA+CGG + chr1_1:47315972-47315991 None:intergenic 10.0%
!! ATTTAAAAATTATAAAAGAG+TGG - chr1_1:47316504-47316523 Msa0024650:intron 10.0%
!!! ATAGAAAACTATTTTAAAAT+GGG + chr1_1:47316557-47316576 None:intergenic 10.0%
!!! AATAGAAAACTATTTTAAAA+TGG + chr1_1:47316558-47316577 None:intergenic 10.0%
!!! ATTTTAAAATAGTTTTCTAT+TGG - chr1_1:47316557-47316576 Msa0024650:intron 10.0%
!! AGCATAAAATAAATTAATAA+GGG + chr1_1:47317680-47317699 None:intergenic 10.0%
!! CTAAAATATTATTAATTCTA+AGG - chr1_1:47317846-47317865 Msa0024650:intron 10.0%
!! AATAAATGTAATTATATAAG+AGG + chr1_1:47317901-47317920 None:intergenic 10.0%
!! ATTAAAATGAATTAATTTAC+CGG + chr1_1:47318230-47318249 None:intergenic 10.0%
!! AAATAATGTTAAGAAATATT+TGG - chr1_1:47318752-47318771 Msa0024650:intron 10.0%
!! TTCAATATACTTTAATAGAA+TGG - chr1_1:47315273-47315292 Msa0024650:CDS 15.0%
!!! TTATTATAATTTTTGAGATG+TGG - chr1_1:47315988-47316007 Msa0024650:intron 15.0%
!!! TATTATAATTTTTGAGATGT+GGG - chr1_1:47315989-47316008 Msa0024650:intron 15.0%
!!! TCCATGATATATTTTATATT+TGG - chr1_1:47316058-47316077 Msa0024650:intron 15.0%
!! ACCAAATATAAAATATATCA+TGG + chr1_1:47316062-47316081 None:intergenic 15.0%
!! AAAATTGAATATACGAAAAT+AGG + chr1_1:47316135-47316154 None:intergenic 15.0%
!! TAAAAAAAAACAGTTATTGT+TGG - chr1_1:47316389-47316408 Msa0024650:intron 15.0%
!! TTTCTTAGTATTTAGAAAAT+AGG - chr1_1:47316710-47316729 Msa0024650:intron 15.0%
!!! ATATTTTATCAGTAGTTTAT+TGG - chr1_1:47316971-47316990 Msa0024650:intron 15.0%
!! TAAAAAAATATGACAAACTA+TGG + chr1_1:47317614-47317633 None:intergenic 15.0%
!! GAGCATAAAATAAATTAATA+AGG + chr1_1:47317681-47317700 None:intergenic 15.0%
!! AAAATGTTAAATCAATCATA+TGG - chr1_1:47317818-47317837 Msa0024650:intron 15.0%
!! TTAAAATGAATTAATTTACC+GGG + chr1_1:47318229-47318248 None:intergenic 15.0%
!!! AATTCTATTTTTGTTAATAG+AGG + chr1_1:47318277-47318296 None:intergenic 15.0%
!! TTGTTAAAATTCATGTATAT+AGG + chr1_1:47318333-47318352 None:intergenic 15.0%
!!! AATAATTTCATTTAATTTGC+AGG - chr1_1:47318353-47318372 Msa0024650:intron 15.0%
!!! ATAATTTCATTTAATTTGCA+GGG - chr1_1:47318354-47318373 Msa0024650:intron 15.0%
!! AAATACAATTGAATGAACAA+TGG + chr1_1:47314936-47314955 None:intergenic 20.0%
!!! CACAATACAATATAGTATTT+TGG - chr1_1:47315368-47315387 Msa0024650:CDS 20.0%
!!! ATTATAATTTTTGAGATGTG+GGG - chr1_1:47315990-47316009 Msa0024650:intron 20.0%
!!! ACTTCTAAAAATCTATTTAG+TGG + chr1_1:47316447-47316466 None:intergenic 20.0%
!!! AAGTCTTTTGTGTATAATTT+TGG - chr1_1:47317067-47317086 Msa0024650:intron 20.0%
!!! ATCAACCATAGTTTATTTTT+AGG - chr1_1:47317579-47317598 Msa0024650:intron 20.0%
!!! TCAACCATAGTTTATTTTTA+GGG - chr1_1:47317580-47317599 Msa0024650:intron 20.0%
!! ATAATAACGTTACATTTATG+TGG - chr1_1:47317927-47317946 Msa0024650:intron 20.0%
!!! CCTAAACATTATTTGAAATA+CGG - chr1_1:47318008-47318027 Msa0024650:intron 20.0%
!!! CTAAACATTATTTGAAATAC+GGG - chr1_1:47318009-47318028 Msa0024650:intron 20.0%
!!! TTAATTCATTTTAATCTGAG+CGG - chr1_1:47318235-47318254 Msa0024650:CDS 20.0%
!!! AAAAATGTCTAGAATTGTAA+AGG + chr1_1:47318622-47318641 None:intergenic 20.0%
!!! ATATTTGGTTTGTAAAAATC+CGG - chr1_1:47318767-47318786 Msa0024650:intron 20.0%
!! AACAAAATGATGCAAATAAA+TGG + chr1_1:47318914-47318933 None:intergenic 20.0%
!!! ATTTTGTTTCTTGTCTAATA+AGG - chr1_1:47318926-47318945 Msa0024650:five_prime_UTR 20.0%
!!! ATGAGGTTTTATATAGTGAA+AGG + chr1_1:47314840-47314859 None:intergenic 25.0%
! AGAAAATATGTAGGATTATG+AGG + chr1_1:47314857-47314876 None:intergenic 25.0%
!!! TAGTTTTGAAGGAAGTTAAA+AGG + chr1_1:47314997-47315016 None:intergenic 25.0%
!!! TTTTAACTTCCTTCAAAACT+AGG - chr1_1:47314996-47315015 Msa0024650:exon 25.0%
!! ATTTTCATAGCTATTCATCA+TGG - chr1_1:47315029-47315048 Msa0024650:CDS 25.0%
!!! CATGTTTGTTTTTGAGATAT+AGG + chr1_1:47315190-47315209 None:intergenic 25.0%
! GGAACAAGTTAAAATAAAAG+GGG + chr1_1:47315469-47315488 None:intergenic 25.0%
! GGGAACAAGTTAAAATAAAA+GGG + chr1_1:47315470-47315489 None:intergenic 25.0%
! TGGGAACAAGTTAAAATAAA+AGG + chr1_1:47315471-47315490 None:intergenic 25.0%
!! AAAACGAACAATTCTTTTGT+AGG + chr1_1:47315603-47315622 None:intergenic 25.0%
!! ACAAAAGAATTGTTCGTTTT+TGG - chr1_1:47315603-47315622 Msa0024650:intron 25.0%
! ATGCTATTAACATAATCAAC+TGG - chr1_1:47315788-47315807 Msa0024650:CDS 25.0%
!! TTTCTTTCTTTCTCTTTTCT+TGG - chr1_1:47315834-47315853 Msa0024650:CDS 25.0%
!! GATTACAAAGCATTCTTAAT+CGG - chr1_1:47316269-47316288 Msa0024650:intron 25.0%
! TTATCTGATTCACATATTGA+AGG + chr1_1:47316336-47316355 None:intergenic 25.0%
!!! TTTTAGAAGTGTTGTATTAG+AGG - chr1_1:47316457-47316476 Msa0024650:intron 25.0%
!! AAATAGTTTTCTATTGGAGA+TGG - chr1_1:47316563-47316582 Msa0024650:intron 25.0%
! CTTAGTATTTAGAAAATAGG+TGG - chr1_1:47316713-47316732 Msa0024650:intron 25.0%
! CAACTAAAAAAAATCGATAG+AGG - chr1_1:47316918-47316937 Msa0024650:intron 25.0%
!!! TATTGCTTTGTTTTTCTTTG+AGG - chr1_1:47317039-47317058 Msa0024650:intron 25.0%
! AATTCACAGAGAATTAATTC+AGG + chr1_1:47317253-47317272 None:intergenic 25.0%
!!! AAGCTATGTGTCATTTTTAT+TGG - chr1_1:47317515-47317534 Msa0024650:intron 25.0%
!!! CAACCATAGTTTATTTTTAG+GGG - chr1_1:47317581-47317600 Msa0024650:intron 25.0%
! TAACCCCTAAAAATAAACTA+TGG + chr1_1:47317587-47317606 None:intergenic 25.0%
! AAATTAATAAGGGTAGTAGT+TGG + chr1_1:47317670-47317689 None:intergenic 25.0%
! CCGTATTTCAAATAATGTTT+AGG + chr1_1:47318011-47318030 None:intergenic 25.0%
! GTATTTGATACATTTACTTC+AGG - chr1_1:47318059-47318078 Msa0024650:intron 25.0%
! AAATGACTACAATCATTACT+TGG - chr1_1:47318187-47318206 Msa0024650:CDS 25.0%
!!! TAATTCATTTTAATCTGAGC+GGG - chr1_1:47318236-47318255 Msa0024650:CDS 25.0%
! TGTTAAGTTATCCTTAAACT+TGG - chr1_1:47318969-47318988 Msa0024650:five_prime_UTR 25.0%
! GAACTCTGAAGAAAATATGT+AGG + chr1_1:47314866-47314885 None:intergenic 30.0%
TGTTGAGAGAAGGAAAATAA+GGG + chr1_1:47314901-47314920 None:intergenic 30.0%
ATGTTGAGAGAAGGAAAATA+AGG + chr1_1:47314902-47314921 None:intergenic 30.0%
ATAACTATGATGTTGAGAGA+AGG + chr1_1:47314911-47314930 None:intergenic 30.0%
AATAGCTATGAAAATGACCA+AGG + chr1_1:47315024-47315043 None:intergenic 30.0%
GAAAATCATACACATACACA+TGG + chr1_1:47315247-47315266 None:intergenic 30.0%
!!! ATAGTATTTTGGTGTGAATC+AGG - chr1_1:47315379-47315398 Msa0024650:CDS 30.0%
!! ACATCTTGTTGTTCATTGTT+AGG - chr1_1:47315540-47315559 Msa0024650:intron 30.0%
!! CATCTTGTTGTTCATTGTTA+GGG - chr1_1:47315541-47315560 Msa0024650:intron 30.0%
! CTTTTGTAGGATGATATTTG+AGG + chr1_1:47315590-47315609 None:intergenic 30.0%
!!! TGAACCAGGTTTACTTTTTT+GGG + chr1_1:47315655-47315674 None:intergenic 30.0%
!!! ATGAACCAGGTTTACTTTTT+TGG + chr1_1:47315656-47315675 None:intergenic 30.0%
AAAAAAGTAAACCTGGTTCA+TGG - chr1_1:47315655-47315674 Msa0024650:intron 30.0%
!!! AGAGTTTTAACTGACTTCAT+TGG - chr1_1:47315735-47315754 Msa0024650:CDS 30.0%
TAATAGCATTAGAGAGAGAT+GGG + chr1_1:47315777-47315796 None:intergenic 30.0%
TTAATAGCATTAGAGAGAGA+TGG + chr1_1:47315778-47315797 None:intergenic 30.0%
AAAGCACAAGAAAGATAAAG+TGG + chr1_1:47316036-47316055 None:intergenic 30.0%
TAGAGGATTTGATGCTTATT+AGG - chr1_1:47316474-47316493 Msa0024650:intron 30.0%
ATGTGATCAGATTCAAAACT+AGG + chr1_1:47317129-47317148 None:intergenic 30.0%
!!! TAGTTTTGAATCTGATCACA+TGG - chr1_1:47317128-47317147 Msa0024650:intron 30.0%
!!! ATGCTTTTGCTTCTAGTTTA+CGG + chr1_1:47317759-47317778 None:intergenic 30.0%
!! TCGATTTGAGTTGTCATATT+TGG + chr1_1:47318086-47318105 None:intergenic 30.0%
ATACATTGTCTTGAATGAGT+TGG + chr1_1:47318118-47318137 None:intergenic 30.0%
TAAATGTACTATTGCAACGT+TGG + chr1_1:47318521-47318540 None:intergenic 30.0%
!! TTCTTGGTTTAATTTGGTCA+CGG + chr1_1:47318583-47318602 None:intergenic 30.0%
! AATGTCTAGAATTGTAAAGG+TGG + chr1_1:47318619-47318638 None:intergenic 30.0%
TCAAACGATCCTTGATATTA+TGG + chr1_1:47318680-47318699 None:intergenic 30.0%
GAATGCTGTATATAATGAGT+TGG - chr1_1:47318836-47318855 Msa0024650:CDS 30.0%
! TATAATGAGTTGGAGAAGAA+AGG - chr1_1:47318846-47318865 Msa0024650:exon 30.0%
! AGAAGCTCTAGTACAAAATA+TGG + chr1_1:47318878-47318897 None:intergenic 30.0%
ATACAAAGAAGCCAAGTTTA+AGG + chr1_1:47318983-47319002 None:intergenic 30.0%
TACATGTGATTTCCTTTCAA+AGG - chr1_1:47319006-47319025 Msa0024650:five_prime_UTR 30.0%
ATAAAAGGGGAATGTATTGC+AGG + chr1_1:47315456-47315475 None:intergenic 35.0%
!!! TTTACTTTTTTGGGTGTTGC+CGG + chr1_1:47315646-47315665 None:intergenic 35.0%
AACACCCAAAAAAGTAAACC+TGG - chr1_1:47315648-47315667 Msa0024650:intron 35.0%
TGACCTGTGAAAATGAATGA+GGG + chr1_1:47316605-47316624 None:intergenic 35.0%
ATGACCTGTGAAAATGAATG+AGG + chr1_1:47316606-47316625 None:intergenic 35.0%
! AGATAAACGTTAAGAGCATG+TGG + chr1_1:47317300-47317319 None:intergenic 35.0%
AAAACGTGATTGAGAGTTTG+AGG - chr1_1:47317354-47317373 Msa0024650:intron 35.0%
AAACGTGATTGAGAGTTTGA+GGG - chr1_1:47317355-47317374 Msa0024650:intron 35.0%
!! AACTAGAAGCAAAAGCATTG+TGG - chr1_1:47317761-47317780 Msa0024650:intron 35.0%
CAATGTTCCTGAATTTGTGA+GGG + chr1_1:47317986-47318005 None:intergenic 35.0%
ACAATGTTCCTGAATTTGTG+AGG + chr1_1:47317987-47318006 None:intergenic 35.0%
AATCATTACTTGGCCACAAA+TGG - chr1_1:47318197-47318216 Msa0024650:CDS 35.0%
ACAACTGAAGCAATGAAAGA+TGG + chr1_1:47318384-47318403 None:intergenic 35.0%
!! GCTTTGGAGATGAATCAAAT+CGG + chr1_1:47318421-47318440 None:intergenic 35.0%
TTGATTCATCTCCAAAGCAT+AGG - chr1_1:47318423-47318442 Msa0024650:intron 35.0%
TGATTCATCTCCAAAGCATA+GGG - chr1_1:47318424-47318443 Msa0024650:intron 35.0%
TTCTCTTAAACCCTATGCTT+TGG + chr1_1:47318437-47318456 None:intergenic 35.0%
GGGTTTAAGAGAATTGTTGT+AGG - chr1_1:47318444-47318463 Msa0024650:intron 35.0%
CTTGGCTTCTTGGTTTAATT+TGG + chr1_1:47318589-47318608 None:intergenic 35.0%
CAAATTAAACCAAGAAGCCA+AGG - chr1_1:47318587-47318606 Msa0024650:intron 35.0%
CCTTGATATTATGGCTTGAA+GGG + chr1_1:47318671-47318690 None:intergenic 35.0%
TCCTTGATATTATGGCTTGA+AGG + chr1_1:47318672-47318691 None:intergenic 35.0%
GTAAGCAGTCAGTATAATTG+TGG - chr1_1:47318717-47318736 Msa0024650:intron 35.0%
! ATCCGGAATCAAGTTTCTTT+TGG - chr1_1:47318784-47318803 Msa0024650:intron 35.0%
! TCCGGAATCAAGTTTCTTTT+GGG - chr1_1:47318785-47318804 Msa0024650:intron 35.0%
TCCCAAAAGAAACTTGATTC+CGG + chr1_1:47318789-47318808 None:intergenic 35.0%
!! GAATCAAGTTTCTTTTGGGA+TGG - chr1_1:47318789-47318808 Msa0024650:intron 35.0%
TCCTTTCAAAGGATGTAATG+TGG - chr1_1:47319017-47319036 Msa0024650:five_prime_UTR 35.0%
TCCACATTACATCCTTTGAA+AGG + chr1_1:47319021-47319040 None:intergenic 35.0%
ATAGTGAAAGGAGAGAAACG+TGG + chr1_1:47314828-47314847 None:intergenic 40.0%
GAGAGAAGGAAAATAAGGGT+TGG + chr1_1:47314897-47314916 None:intergenic 40.0%
GGAGACTCTTATGTTGATAC+CGG - chr1_1:47315624-47315643 Msa0024650:intron 40.0%
TAAGGTTCTTTCCATGAACC+AGG + chr1_1:47315669-47315688 None:intergenic 40.0%
GGTTCATGGAAAGAACCTTA+TGG - chr1_1:47315669-47315688 Msa0024650:intron 40.0%
TAGAGAGAGATGGGTGAAAT+AGG + chr1_1:47315768-47315787 None:intergenic 40.0%
! TGTGGGGTTTATTTCTTCGT+TGG - chr1_1:47316006-47316025 Msa0024650:intron 40.0%
! ACAATGAGGCAGCATTTTAC+AGG + chr1_1:47316097-47316116 None:intergenic 40.0%
TAAAATGCTGCCTCATTGTG+TGG - chr1_1:47316098-47316117 Msa0024650:intron 40.0%
AACACAATCACCACACAATG+AGG + chr1_1:47316111-47316130 None:intergenic 40.0%
! ACTCCCTCATTCATTTTCAC+AGG - chr1_1:47316599-47316618 Msa0024650:intron 40.0%
! CATTTTCACAGGTCATTCGT+TGG - chr1_1:47316610-47316629 Msa0024650:intron 40.0%
TCTCTGTGAATTCCTCACTT+TGG - chr1_1:47317261-47317280 Msa0024650:intron 40.0%
TAAGCATATAGGCCAAAGTG+AGG + chr1_1:47317276-47317295 None:intergenic 40.0%
GAGCATGTGGTTAAGCATAT+AGG + chr1_1:47317287-47317306 None:intergenic 40.0%
TGATTGAGAGTTTGAGGGAT+TGG - chr1_1:47317360-47317379 Msa0024650:intron 40.0%
TTCCTGAATTTGTGAGGGAT+TGG + chr1_1:47317981-47318000 None:intergenic 40.0%
TACGGGATGAACTTTGCATA+TGG - chr1_1:47318026-47318045 Msa0024650:intron 40.0%
AACTTTGCATATGGTGGTAC+AGG - chr1_1:47318035-47318054 Msa0024650:intron 40.0%
!! GTCTTGAATGAGTTGGTTGA+AGG + chr1_1:47318111-47318130 None:intergenic 40.0%
ATTGCTTATGTCTCTGTTGC+TGG - chr1_1:47318164-47318183 Msa0024650:CDS 40.0%
!! GGTTTAATTTGGTCACGGAT+TGG + chr1_1:47318578-47318597 None:intergenic 40.0%
TGATATTATGGCTTGAAGGG+TGG + chr1_1:47318668-47318687 None:intergenic 40.0%
CCCTTCAAGCCATAATATCA+AGG - chr1_1:47318668-47318687 Msa0024650:intron 40.0%
TCCTTCAAAACTAGGCACCT+TGG - chr1_1:47315004-47315023 Msa0024650:exon 45.0%
!!! ACCAAGGTGCCTAGTTTTGA+AGG + chr1_1:47315008-47315027 None:intergenic 45.0%
CTGATGCTTGTACTTCTCTC+AGG - chr1_1:47315090-47315109 Msa0024650:CDS 45.0%
CCTTATGGCATAACCTTTCC+CGG - chr1_1:47315684-47315703 Msa0024650:CDS 45.0%
AAAACCTGCGGGAAGATTCT+CGG - chr1_1:47315707-47315726 Msa0024650:CDS 45.0%
ATGCATTGTCCCTATCCTCA+CGG - chr1_1:47317010-47317029 Msa0024650:intron 45.0%
ATAGCAATCCCGTGAGGATA+GGG + chr1_1:47317022-47317041 None:intergenic 45.0%
AATAGCAATCCCGTGAGGAT+AGG + chr1_1:47317023-47317042 None:intergenic 45.0%
AAAGCAATAGCAATCCCGTG+AGG + chr1_1:47317028-47317047 None:intergenic 45.0%
CACCAATCCCTCACAAATTC+AGG - chr1_1:47317976-47317995 Msa0024650:intron 45.0%
GGGATGAACTTTGCATATGG+TGG - chr1_1:47318029-47318048 Msa0024650:intron 45.0%
GTAGGTGCTTTACAACCACT+TGG - chr1_1:47318462-47318481 Msa0024650:intron 45.0%
ACTATTGCAACGTTGGAACG+AGG + chr1_1:47318514-47318533 None:intergenic 45.0%
GGTTGTTATGAAGAGCTACG+AGG + chr1_1:47318548-47318567 None:intergenic 45.0%
!! TGGTCACGGATTGGTTCAAT+AGG + chr1_1:47318569-47318588 None:intergenic 45.0%
TGTAAAGGTGGTGTGATCCT+TGG + chr1_1:47318607-47318626 None:intergenic 45.0%
! TCGTTTGAAACCATGTTGCG+CGG - chr1_1:47318692-47318711 Msa0024650:intron 45.0%
CATTCCATCCAGCTTGTGTT+GGG + chr1_1:47318821-47318840 None:intergenic 45.0%
AGAGAAACGTGGCCAAGACT+TGG + chr1_1:47314817-47314836 None:intergenic 50.0%
ATTGTTAGGGCTGCAAGCTG+AGG - chr1_1:47315554-47315573 Msa0024650:intron 50.0%
CCGGGAAAGGTTATGCCATA+AGG + chr1_1:47315687-47315706 None:intergenic 50.0%
AACCTTTCCCGGAAAACCTG+CGG - chr1_1:47315695-47315714 Msa0024650:CDS 50.0%
! AATCTTCCCGCAGGTTTTCC+GGG + chr1_1:47315705-47315724 None:intergenic 50.0%
! GAATCTTCCCGCAGGTTTTC+CGG + chr1_1:47315706-47315725 None:intergenic 50.0%
TGCATTGTCCCTATCCTCAC+GGG - chr1_1:47317011-47317030 Msa0024650:intron 50.0%
GTCTGAGGAAGACATCCAAG+TGG + chr1_1:47318480-47318499 None:intergenic 50.0%
TTGGAACGAGGATTGAGCAG+TGG + chr1_1:47318502-47318521 None:intergenic 50.0%
TGGTGTGATCCTTGGCTTCT+TGG + chr1_1:47318599-47318618 None:intergenic 50.0%
GCTTGAAGGGTGGTTCAACA+CGG + chr1_1:47318658-47318677 None:intergenic 50.0%
! CGTTTGAAACCATGTTGCGC+GGG - chr1_1:47318693-47318712 Msa0024650:intron 50.0%
GCATTCCATCCAGCTTGTGT+TGG + chr1_1:47318822-47318841 None:intergenic 50.0%
ACCTTTCCCGGAAAACCTGC+GGG - chr1_1:47315696-47315715 Msa0024650:CDS 55.0%
TACCGGGAGAGAGCCATTTG+TGG + chr1_1:47318213-47318232 None:intergenic 55.0%
GAGGATTGAGCAGTGGTCTG+AGG + chr1_1:47318495-47318514 None:intergenic 55.0%
GGATTGCACCCAACACAAGC+TGG - chr1_1:47318810-47318829 Msa0024650:CDS 55.0%
TGCACCCAACACAAGCTGGA+TGG - chr1_1:47318814-47318833 Msa0024650:CDS 55.0%
! TCCCGCAGGTTTTCCGGGAA+AGG + chr1_1:47315700-47315719 None:intergenic 60.0%
CCTGCGGGAAGATTCTCGGA+CGG - chr1_1:47315711-47315730 Msa0024650:CDS 60.0%
GGCCACAAATGGCTCTCTCC+CGG - chr1_1:47318208-47318227 Msa0024650:CDS 60.0%
CTGCTTACTCCCGCGCAACA+TGG + chr1_1:47318705-47318724 None:intergenic 60.0%
CCGTCCGAGAATCTTCCCGC+AGG + chr1_1:47315714-47315733 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 47314807 47319098 47314807 ID=Msa0024650;Name=Msa0024650
chr1_1 mRNA 47314807 47319098 47314807 ID=Msa0024650-mRNA-1;Parent=Msa0024650;Name=Msa0024650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=241|1|1|1|1|1|4|208|349
chr1_1 exon 47314807 47315530 47314807 ID=Msa0024650-mRNA-1:exon:13470;Parent=Msa0024650-mRNA-1
chr1_1 exon 47315676 47315950 47315676 ID=Msa0024650-mRNA-1:exon:13469;Parent=Msa0024650-mRNA-1
chr1_1 exon 47318149 47318343 47318149 ID=Msa0024650-mRNA-1:exon:13468;Parent=Msa0024650-mRNA-1
chr1_1 exon 47318794 47319098 47318794 ID=Msa0024650-mRNA-1:exon:13467;Parent=Msa0024650-mRNA-1
chr1_1 five_prime_UTR 47318858 47319098 47318858 ID=Msa0024650-mRNA-1:five_prime_utr;Parent=Msa0024650-mRNA-1
chr1_1 CDS 47318794 47318857 47318794 ID=Msa0024650-mRNA-1:cds;Parent=Msa0024650-mRNA-1
chr1_1 CDS 47318149 47318343 47318149 ID=Msa0024650-mRNA-1:cds;Parent=Msa0024650-mRNA-1
chr1_1 CDS 47315676 47315950 47315676 ID=Msa0024650-mRNA-1:cds;Parent=Msa0024650-mRNA-1
chr1_1 CDS 47315015 47315530 47315015 ID=Msa0024650-mRNA-1:cds;Parent=Msa0024650-mRNA-1
chr1_1 three_prime_UTR 47314807 47315014 47314807 ID=Msa0024650-mRNA-1:three_prime_utr;Parent=Msa0024650-mRNA-1
Gene Sequence

>Msa0024650

ATGGACTCGTATAAGCAACTTTTCATCTTCTCATGTCTTTCGCTGATGCTTGTACTTCTCTCAGGGCTGCAAGCTGAGGCAAGTCGTCACCTCAAATATCATCCTACAAAAGAATTGTTCGTTTTTGGAGACTCTTATGTTGATACCGGCAACACCCAAAAAAGTAAACCTGGTTCATGGAAAGAACCTTATGGCATAACCTTTCCCGGAAAACCTGCGGGAAGATTCTCGGACGGTAGAGTTTTAACTGACTTCATTGCAAAGTATTTGAGATTGAGATCACCAATCCCTCACAAATTCAGGAACATTGTGCCTAAACATTATTTGAAATACGGGATGAACTTTGCATATGGTGGTACAGGTGTATTTGATACATTTACTTCAGGACCAAATATGACAACTCAAATCGATTCCTTCAACCAACTCATTCAAGACAATGTATATACTCATTCAGATCTCAACAAAGCTATTGCTTATGTCTCTGTTGCTGGAAATGACTACAATCATTACTTGGCCACAAATGGCTCTCTCCCGGGTTTTCCATCTTTCATTGCTTCAGTTGTTAAACAAACAACGACCGATTTGATTCATCTCCAAAGCATAGGGTTTAAGAGAATTGTTGTAGGTGCTTTACAACCACTTGGATGTCTTCCTCAGACCACTGCTCAATCCTCGTTCCAACGTTGCAATAGTACATTTAACGACCTCGTAGCTCTTCATAACAACCTATTGAACCAATCCGTGACCAAATTAAACCAAGAAGCCAAGGATCACACCACCTTTACAATTCTAGACATTTTTGACAGTTTCGCGTCCGTGTTGAACCACCCTTCAAGCCATAATATCAAGGATCGTTTGAAACCATGTTGCGCGGGAGTAAGCAGTCAGTATAATTGTGGAAGTGTAGATGAAAATAATGTTAAGAAATATTTGGTTTGTAAAAATCCGGAATCAAGTTTCTTTTGGGATGGATTGCACCCAACACAAGCTGGATGGAATGCTGTATATAATGAGTTGGAGAAGAAAGGTCTTCACCATATTTTGTACTAG
Protein sequence

>Msa0024650

MDSYKQLFIFSCLSLMLVLLSGLQAEASRHLKYHPTKELFVFGDSYVDTGNTQKSKPGSWKEPYGITFPGKPAGRFSDGRVLTDFIAKYLRLRSPIPHKFRNIVPKHYLKYGMNFAYGGTGVFDTFTSGPNMTTQIDSFNQLIQDNVYTHSDLNKAIAYVSVAGNDYNHYLATNGSLPGFPSFIASVVKQTTTDLIHLQSIGFKRIVVGALQPLGCLPQTTAQSSFQRCNSTFNDLVALHNNLLNQSVTKLNQEAKDHTTFTILDIFDSFASVLNHPSSHNIKDRLKPCCAGVSSQYNCGSVDENNVKKYLVCKNPESSFFWDGLHPTQAGWNAVYNELEKKGLHHILY*