Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156300 | XP_003590011.1 | 75.806 | 186 | 13 | 2 | 1 | 154 | 1 | 186 | 3.32e-81 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156300 | G7I4N6 | 75.806 | 186 | 13 | 2 | 1 | 154 | 1 | 186 | 1.58e-81 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0156300 | Msa0187830 | 0.801352 | 9.375842e-49 | -8.615850e-47 |
| Msa0156300 | Msa0191890 | 0.802641 | 5.094702e-49 | -8.615850e-47 |
| Msa0156300 | Msa0232020 | 0.809681 | 1.678051e-50 | -8.615850e-47 |
| Msa0156300 | Msa0244900 | 0.800113 | 1.678431e-48 | -8.615850e-47 |
| Msa0156300 | Msa0269560 | 0.823349 | 1.453061e-53 | -8.615850e-47 |
| Msa0156300 | Msa0283490 | 0.800891 | 1.165272e-48 | -8.615850e-47 |
| Msa0156300 | Msa0408340 | 0.807737 | 4.368233e-50 | -8.615850e-47 |
| Msa0156300 | Msa0432670 | 0.802832 | 4.652062e-49 | -8.615850e-47 |
| Msa0156300 | Msa0501410 | 0.813663 | 2.283420e-51 | -8.615850e-47 |
| Msa0156300 | Msa0546520 | 0.826905 | 2.098915e-54 | -8.615850e-47 |
| Msa0156300 | Msa0614380 | 0.801252 | 9.827092e-49 | -8.615850e-47 |
| Msa0156300 | Msa0682070 | 0.846568 | 2.001978e-59 | -8.615850e-47 |
| Msa0156300 | Msa0697590 | 0.807460 | 4.999493e-50 | -8.615850e-47 |
| Msa0156300 | Msa0981040 | 0.804317 | 2.289253e-49 | -8.615850e-47 |
| Msa0156300 | Msa1043120 | 0.806057 | 9.896396e-50 | -8.615850e-47 |
| Msa0156300 | Msa1145540 | 0.954418 | 3.093213e-112 | -8.615850e-47 |
| Msa0156300 | Msa1161810 | 0.805996 | 1.019129e-49 | -8.615850e-47 |
| Msa0156300 | Msa1214170 | 0.802895 | 4.515853e-49 | -8.615850e-47 |
| Msa0156300 | Msa1219900 | 0.809372 | 1.955308e-50 | -8.615850e-47 |
| Msa0156300 | Msa1236440 | 0.806008 | 1.013537e-49 | -8.615850e-47 |
| Msa0156300 | Msa1266490 | 0.832541 | 8.913026e-56 | -8.615850e-47 |
| Msa0156300 | Msa1345810 | 0.805729 | 1.159654e-49 | -8.615850e-47 |
| Msa0156300 | Msa1349450 | 0.808647 | 2.795181e-50 | -8.615850e-47 |
| Msa0156300 | Msa1360420 | 0.801420 | 9.079234e-49 | -8.615850e-47 |
| Msa0156300 | Msa1409490 | 0.830713 | 2.515283e-55 | -8.615850e-47 |
| Msa0156300 | Msa1424630 | 0.803491 | 3.399692e-49 | -8.615850e-47 |
| Msa0156300 | Msa1430550 | 0.827064 | 1.922925e-54 | -8.615850e-47 |
| Msa0156300 | Msa1441270 | 0.960210 | 2.666268e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156300 | MtrunA17_Chr1g0167501 | 75.806 | 186 | 13 | 2 | 1 | 154 | 105 | 290 | 1.67e-83 | 249 |
| Msa0156300 | MtrunA17_Chr1g0187721 | 40.506 | 158 | 74 | 5 | 1 | 154 | 1 | 142 | 1.26e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156300 | AT4G14380.1 | 30.000 | 210 | 132 | 6 | 1 | 205 | 1 | 200 | 9.90e-21 | 85.9 |
Find 24 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTCTTCCATGCTTTCT+TGG | 0.227721 | 1_4:-22130627 | None:intergenic |
| ATAAATTTCGTGAAGATATA+AGG | 0.252185 | 1_4:+22131070 | Msa0156300:CDS |
| TTCTTCCATGCTTTCTTGGC+TGG | 0.283893 | 1_4:-22130623 | None:intergenic |
| CAATGATGTAGATACTTTAG+AGG | 0.423826 | 1_4:+22130979 | Msa0156300:CDS |
| TCTCTATTCTCAAACTCATT+CGG | 0.450268 | 1_4:+22130868 | Msa0156300:CDS |
| CAATGTTGCAAGTGATCAAA+AGG | 0.468403 | 1_4:+22131032 | Msa0156300:CDS |
| ATAAATTTCGTGAAGATACA+AGG | 0.483067 | 1_4:+22138279 | Msa0156300:CDS |
| CATGGAAAGTTGTGGTTGCT+AGG | 0.488094 | 1_4:+22138213 | Msa0156300:CDS |
| AATGTTGCAAGTGGATCAAA+AGG | 0.493765 | 1_4:+22138241 | Msa0156300:CDS |
| TGAGGTTATGAGATGAGTGA+GGG | 0.528444 | 1_4:-22130738 | None:intergenic |
| TTGAGGTTATGAGATGAGTG+AGG | 0.532018 | 1_4:-22130739 | None:intergenic |
| CAATGATGTAGACACTATAG+AGG | 0.549886 | 1_4:+22138187 | Msa0156300:intron |
| TTAAACCAGCCAAGAAAGCA+TGG | 0.562063 | 1_4:+22130618 | Msa0156300:CDS |
| TAGATACTTTAGAGGATGCA+TGG | 0.571579 | 1_4:+22130987 | Msa0156300:CDS |
| AACAAGTAGAGAAATTGAAA+AGG | 0.571929 | 1_4:+22130937 | Msa0156300:CDS |
| AGAGTGAAAGAATGTGTTGA+AGG | 0.572500 | 1_4:-22130709 | None:intergenic |
| AGAGGATGCATGGCAAGTAG+TGG | 0.577407 | 1_4:+22130997 | Msa0156300:CDS |
| TAGACACTATAGAGGATGCA+TGG | 0.587531 | 1_4:+22138195 | Msa0156300:intron |
| CATTGCTTGAATTTCATGAG+AGG | 0.602579 | 1_4:+22131109 | Msa0156300:CDS |
| CATTGCTTGAATTTCATGAG+AGG | 0.602579 | 1_4:+22138318 | Msa0156300:CDS |
| GAGTGAAAGAATGTGTTGAA+GGG | 0.655279 | 1_4:-22130708 | None:intergenic |
| AGTAATATTCATCATGCACA+AGG | 0.662096 | 1_4:+22130911 | Msa0156300:CDS |
| TAGGTCTCCAATGTTGCAAG+TGG | 0.662107 | 1_4:+22138232 | Msa0156300:CDS |
| AGAGGATGCATGGAAAGTTG+TGG | 0.674113 | 1_4:+22138205 | Msa0156300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATAAATTAGATTTTGA+TGG | + | chr1_4:22132940-22132959 | Msa0156300:intron | 10.0% |
| !!! | TCAAAAATTTATGAATTTTA+AGG | - | chr1_4:22133219-22133238 | None:intergenic | 10.0% |
| !!! | TTATAAATATTGATTATCAT+TGG | + | chr1_4:22133553-22133572 | Msa0156300:intron | 10.0% |
| !! | AAATTATAGATTATAATCAT+AGG | - | chr1_4:22136513-22136532 | None:intergenic | 10.0% |
| !! | AAATTTAATTAATGTTTGAT+GGG | - | chr1_4:22137359-22137378 | None:intergenic | 10.0% |
| !! | AAAATTTAATTAATGTTTGA+TGG | - | chr1_4:22137360-22137379 | None:intergenic | 10.0% |
| !! | TAATCTATATCATCAAATTT+AGG | - | chr1_4:22131148-22131167 | None:intergenic | 15.0% |
| !!! | TAAATTTTGTTTAATTAGTC+CGG | + | chr1_4:22131448-22131467 | Msa0156300:intron | 15.0% |
| !! | GTGTATAATGTATTAATATA+TGG | + | chr1_4:22132526-22132545 | Msa0156300:intron | 15.0% |
| !! | AAATATAAATGCATAGTATT+TGG | + | chr1_4:22132659-22132678 | Msa0156300:intron | 15.0% |
| !!! | ATAAGATTTAAAGGATTTTA+TGG | - | chr1_4:22133254-22133273 | None:intergenic | 15.0% |
| !! | ATAAAATGATTTAAGTGTAT+TGG | - | chr1_4:22133403-22133422 | None:intergenic | 15.0% |
| !!! | TATACAATTTTTAAAATGAG+AGG | - | chr1_4:22133674-22133693 | None:intergenic | 15.0% |
| !!! | AAACTTTATTAGTACAATTT+TGG | - | chr1_4:22134390-22134409 | None:intergenic | 15.0% |
| !!! | TTTTTGTCAAAGATATTTAA+TGG | + | chr1_4:22136417-22136436 | Msa0156300:intron | 15.0% |
| !! | AATATGAGAATTACAAATAT+TGG | + | chr1_4:22136568-22136587 | Msa0156300:intron | 15.0% |
| !!! | TTCTGAGAAAATTTTAATAA+GGG | - | chr1_4:22136644-22136663 | None:intergenic | 15.0% |
| !!! | TTTCTGAGAAAATTTTAATA+AGG | - | chr1_4:22136645-22136664 | None:intergenic | 15.0% |
| !!! | TTTTTGATATGTTTAGTTTG+TGG | - | chr1_4:22130676-22130695 | None:intergenic | 20.0% |
| !! | ATAAATTTCGTGAAGATATA+AGG | + | chr1_4:22131070-22131089 | Msa0156300:CDS | 20.0% |
| !! | CATGATTATGATAAATATCA+TGG | + | chr1_4:22131201-22131220 | Msa0156300:intron | 20.0% |
| !! | ATAGCAATAATAATAGTGAT+AGG | - | chr1_4:22131792-22131811 | None:intergenic | 20.0% |
| !! | AGAAACAATATAATGAGATT+TGG | - | chr1_4:22131886-22131905 | None:intergenic | 20.0% |
| !!! | AATCTCATTATATTGTTTCT+TGG | + | chr1_4:22131886-22131905 | Msa0156300:intron | 20.0% |
| !!! | ATCTCATTATATTGTTTCTT+GGG | + | chr1_4:22131887-22131906 | Msa0156300:intron | 20.0% |
| !!! | TTATGTTTTCTCATGTTTTT+AGG | + | chr1_4:22131955-22131974 | Msa0156300:intron | 20.0% |
| !!! | TATGTTTTCTCATGTTTTTA+GGG | + | chr1_4:22131956-22131975 | Msa0156300:intron | 20.0% |
| !!! | TTATGAGTGTTTTTTTATAG+TGG | + | chr1_4:22132174-22132193 | Msa0156300:intron | 20.0% |
| !! | ACAATATTTATGAGTGTTTA+AGG | + | chr1_4:22132265-22132284 | Msa0156300:intron | 20.0% |
| !! | CAATATTTATGAGTGTTTAA+GGG | + | chr1_4:22132266-22132285 | Msa0156300:intron | 20.0% |
| !!! | TTTCTAAATTAAGAGTGTAA+TGG | - | chr1_4:22132320-22132339 | None:intergenic | 20.0% |
| !! | ATGTAAAAAATATGATTGGT+AGG | - | chr1_4:22132430-22132449 | None:intergenic | 20.0% |
| !! | GTTGATGTAAAAAATATGAT+TGG | - | chr1_4:22132434-22132453 | None:intergenic | 20.0% |
| !! | CAAAATCATTCAAATTTCAA+AGG | + | chr1_4:22132913-22132932 | Msa0156300:intron | 20.0% |
| !! | GATTACATCATAAGATTTAA+AGG | - | chr1_4:22133263-22133282 | None:intergenic | 20.0% |
| !! | AATATAAATGTACAGTGTTT+AGG | - | chr1_4:22133471-22133490 | None:intergenic | 20.0% |
| !! | AGAAAATAATTGAAGTTAGT+TGG | - | chr1_4:22133524-22133543 | None:intergenic | 20.0% |
| !!! | ACAAGTTTGTTATACATTTT+CGG | - | chr1_4:22133880-22133899 | None:intergenic | 20.0% |
| !! | TTATTATTAAATAACGCATG+TGG | - | chr1_4:22134602-22134621 | None:intergenic | 20.0% |
| !! | ATAAATCAGAGATAAATACA+AGG | + | chr1_4:22134618-22134637 | Msa0156300:intron | 20.0% |
| !! | TGAACATATGAATAAATTCA+AGG | + | chr1_4:22134993-22135012 | Msa0156300:intron | 20.0% |
| !! | AAGATAATTAATGACAACTA+CGG | - | chr1_4:22135122-22135141 | None:intergenic | 20.0% |
| !! | GGAACATCATAATATATTAT+GGG | - | chr1_4:22135145-22135164 | None:intergenic | 20.0% |
| !! | ATAAAAAGAGTCAATCAAAA+GGG | - | chr1_4:22135166-22135185 | None:intergenic | 20.0% |
| !! | AATAAAAAGAGTCAATCAAA+AGG | - | chr1_4:22135167-22135186 | None:intergenic | 20.0% |
| !! | TTGTATCTAACATAAAGAAT+TGG | - | chr1_4:22135196-22135215 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTCTATAGTTTAT+AGG | + | chr1_4:22135311-22135330 | Msa0156300:intron | 20.0% |
| !! | ACCAAATTTAAATTTATCCA+AGG | + | chr1_4:22135501-22135520 | Msa0156300:intron | 20.0% |
| !! | CCAAATTTAAATTTATCCAA+GGG | + | chr1_4:22135502-22135521 | Msa0156300:intron | 20.0% |
| !! | TTATAGATTATAATCATAGG+AGG | - | chr1_4:22136510-22136529 | None:intergenic | 20.0% |
| !!! | GATCATTATTATTTCTCTTT+GGG | - | chr1_4:22137423-22137442 | None:intergenic | 20.0% |
| !! | CGATATAAAATAAAAGAGTT+CGG | + | chr1_4:22137783-22137802 | Msa0156300:intron | 20.0% |
| !! | GATATAAAATAAAAGAGTTC+GGG | + | chr1_4:22137784-22137803 | Msa0156300:intron | 20.0% |
| !! | AATATCCAACAAAATAAGTA+GGG | - | chr1_4:22137903-22137922 | None:intergenic | 20.0% |
| !! | TAATATCCAACAAAATAAGT+AGG | - | chr1_4:22137904-22137923 | None:intergenic | 20.0% |
| !!! | TTAGTTTGTGGAATTTTGAT+TGG | - | chr1_4:22130664-22130683 | None:intergenic | 25.0% |
| ! | TGTTGAAAATGGTAATAAGA+AGG | - | chr1_4:22130818-22130837 | None:intergenic | 25.0% |
| ! | AACAAGTAGAGAAATTGAAA+AGG | + | chr1_4:22130937-22130956 | Msa0156300:CDS | 25.0% |
| ! | TTATGATAAATATCATGGCT+TGG | + | chr1_4:22131206-22131225 | Msa0156300:intron | 25.0% |
| ! | AATACACACTTTATTATTGC+CGG | - | chr1_4:22131470-22131489 | None:intergenic | 25.0% |
| ! | AATTCAAATTTACTCCAACA+CGG | - | chr1_4:22131554-22131573 | None:intergenic | 25.0% |
| ! | ACAAAAAAAATACAAGAAGG+AGG | - | chr1_4:22132135-22132154 | None:intergenic | 25.0% |
| ! | GGAACAAAAAAAATACAAGA+AGG | - | chr1_4:22132138-22132157 | None:intergenic | 25.0% |
| ! | GACAATGTATAAAATATGCA+AGG | - | chr1_4:22132218-22132237 | None:intergenic | 25.0% |
| ! | TTTCGAAGAACATTAATCAT+TGG | - | chr1_4:22132372-22132391 | None:intergenic | 25.0% |
| ! | TTAAACAAGTTTCATATTCG+AGG | - | chr1_4:22132460-22132479 | None:intergenic | 25.0% |
| !!! | ATTTTGAGTCCAATTTTTGT+CGG | + | chr1_4:22132490-22132509 | Msa0156300:intron | 25.0% |
| !!! | TGTCATTTTAAAAAGTCTTG+AGG | + | chr1_4:22132847-22132866 | Msa0156300:intron | 25.0% |
| ! | TTTCATGAAGACATAAGATT+TGG | + | chr1_4:22133002-22133021 | Msa0156300:intron | 25.0% |
| ! | TTCATGAAGACATAAGATTT+GGG | + | chr1_4:22133003-22133022 | Msa0156300:intron | 25.0% |
| !! | GATTTTCAATTTGGATTCAA+TGG | - | chr1_4:22133285-22133304 | None:intergenic | 25.0% |
| ! | TCATGATTTAAAAGACAATC+AGG | - | chr1_4:22133307-22133326 | None:intergenic | 25.0% |
| ! | TGATTTAAGTGTATTGGATT+AGG | - | chr1_4:22133397-22133416 | None:intergenic | 25.0% |
| !!! | ATTGATTATCATTGGCTTTA+TGG | + | chr1_4:22133561-22133580 | Msa0156300:intron | 25.0% |
| !!! | TTTTACATTCAGTTTGCTTT+TGG | + | chr1_4:22133834-22133853 | Msa0156300:intron | 25.0% |
| ! | AAATGTATAACAAACTTGTG+AGG | + | chr1_4:22133881-22133900 | Msa0156300:intron | 25.0% |
| !! | GAATTTTTGTCTTCTTCATT+TGG | + | chr1_4:22133903-22133922 | Msa0156300:intron | 25.0% |
| ! | TGAATTAGTGCCTATTAATT+AGG | + | chr1_4:22133944-22133963 | Msa0156300:intron | 25.0% |
| ! | GAATTAGTGCCTATTAATTA+GGG | + | chr1_4:22133945-22133964 | Msa0156300:intron | 25.0% |
| ! | TTAGCATAACCCTAATTAAT+AGG | - | chr1_4:22133957-22133976 | None:intergenic | 25.0% |
| ! | GAATTACAAATAGATGTTGA+TGG | + | chr1_4:22134039-22134058 | Msa0156300:intron | 25.0% |
| !!! | TAGCTTAAAGTATTGAATGA+GGG | - | chr1_4:22134272-22134291 | None:intergenic | 25.0% |
| !!! | ATAGCTTAAAGTATTGAATG+AGG | - | chr1_4:22134273-22134292 | None:intergenic | 25.0% |
| ! | CTCTTTAATCTTTCCAAATA+GGG | - | chr1_4:22134494-22134513 | None:intergenic | 25.0% |
| ! | TAAAATATCTCAACTTCTCA+AGG | + | chr1_4:22134726-22134745 | Msa0156300:intron | 25.0% |
| ! | AATAAACAGAAATCACGAAA+AGG | + | chr1_4:22134795-22134814 | Msa0156300:intron | 25.0% |
| ! | GGGAACATCATAATATATTA+TGG | - | chr1_4:22135146-22135165 | None:intergenic | 25.0% |
| ! | TATCTAACATAAAGAATTGG+AGG | - | chr1_4:22135193-22135212 | None:intergenic | 25.0% |
| ! | CTTTATGTTAGATACAAACT+AGG | + | chr1_4:22135199-22135218 | Msa0156300:intron | 25.0% |
| ! | AAGTTTGTATGGGTATTTAT+AGG | - | chr1_4:22135237-22135256 | None:intergenic | 25.0% |
| ! | AAAAAAGAAGAAGTGAAAGA+GGG | - | chr1_4:22135296-22135315 | None:intergenic | 25.0% |
| ! | AAAAAGAATTTGGGAGTAAA+AGG | - | chr1_4:22135442-22135461 | None:intergenic | 25.0% |
| ! | CCCTTGGATAAATTTAAATT+TGG | - | chr1_4:22135505-22135524 | None:intergenic | 25.0% |
| ! | AATGATTAATCACATTGACA+TGG | - | chr1_4:22136368-22136387 | None:intergenic | 25.0% |
| ! | ACATGACATATAAACTATGT+TGG | + | chr1_4:22136484-22136503 | Msa0156300:intron | 25.0% |
| !!! | GAAAATTTTAATAAGGGACA+AGG | - | chr1_4:22136638-22136657 | None:intergenic | 25.0% |
| ! | AAAACCCATTAGAATAAATC+CGG | + | chr1_4:22136663-22136682 | Msa0156300:intron | 25.0% |
| ! | GGAGAAAAGTTAAAATTGTT+GGG | - | chr1_4:22136900-22136919 | None:intergenic | 25.0% |
| !! | ACTTTCTTATTTGACATTTC+AGG | - | chr1_4:22136955-22136974 | None:intergenic | 25.0% |
| ! | TACAAGTAATCAGTAAAACA+TGG | + | chr1_4:22137129-22137148 | Msa0156300:intron | 25.0% |
| ! | TATATTGTTAAATGCCTCTA+AGG | + | chr1_4:22137250-22137269 | Msa0156300:intron | 25.0% |
| !! | CGATCATTATTATTTCTCTT+TGG | - | chr1_4:22137424-22137443 | None:intergenic | 25.0% |
| ! | ATATCCAACAAAATAAGTAG+GGG | - | chr1_4:22137902-22137921 | None:intergenic | 25.0% |
| ! | ACTACTATTCATAGAAGAAA+CGG | - | chr1_4:22138099-22138118 | None:intergenic | 25.0% |
| ! | AACAAGTAGAGAAATTGAAA+AGG | + | chr1_4:22130937-22130956 | Msa0156300:CDS | 25.0% |
| ! | ATAAATTTCGTGAAGATACA+AGG | + | chr1_4:22138279-22138298 | Msa0156300:CDS | 25.0% |
| !!! | ACGATGAGTTTTACTTTTTG+AGG | - | chr1_4:22130759-22130778 | None:intergenic | 30.0% |
| ! | CAAAGCTTTTGTGTTGAAAA+TGG | - | chr1_4:22130829-22130848 | None:intergenic | 30.0% |
| TCTCTATTCTCAAACTCATT+CGG | + | chr1_4:22130868-22130887 | Msa0156300:CDS | 30.0% | |
| AGTAATATTCATCATGCACA+AGG | + | chr1_4:22130911-22130930 | Msa0156300:CDS | 30.0% | |
| CAATGATGTAGATACTTTAG+AGG | + | chr1_4:22130979-22130998 | Msa0156300:CDS | 30.0% | |
| !! | TAAATATCATGGCTTGGTTT+CGG | + | chr1_4:22131212-22131231 | Msa0156300:intron | 30.0% |
| !! | TTAGTTCTATTGAGAAGCAA+AGG | + | chr1_4:22131273-22131292 | Msa0156300:intron | 30.0% |
| ! | TAGTTCTATTGAGAAGCAAA+GGG | + | chr1_4:22131274-22131293 | Msa0156300:intron | 30.0% |
| ! | GCACATGTAGTTAATTGTTT+TGG | + | chr1_4:22131337-22131356 | Msa0156300:intron | 30.0% |
| AGATGTATATCAAACTTGTG+AGG | + | chr1_4:22131383-22131402 | Msa0156300:intron | 30.0% | |
| ! | TTATCATTTTACAACCGTGT+TGG | + | chr1_4:22131537-22131556 | Msa0156300:intron | 30.0% |
| CTACACACTTTATGATTAAG+AGG | - | chr1_4:22131623-22131642 | None:intergenic | 30.0% | |
| !!! | TTTTCTCATGTTTTTAGGGA+GGG | + | chr1_4:22131960-22131979 | Msa0156300:intron | 30.0% |
| ! | ATGACTGTTCAGATTTTTCT+TGG | + | chr1_4:22132018-22132037 | Msa0156300:intron | 30.0% |
| CCTTAAAAAAGTTCCACAAA+AGG | - | chr1_4:22132064-22132083 | None:intergenic | 30.0% | |
| !!! | CCTTTTGTGGAACTTTTTTA+AGG | + | chr1_4:22132061-22132080 | Msa0156300:intron | 30.0% |
| ! | ATCTCCCAAATTTTTGCTTT+TGG | + | chr1_4:22132093-22132112 | Msa0156300:intron | 30.0% |
| !! | TCTCCCAAATTTTTGCTTTT+GGG | + | chr1_4:22132094-22132113 | Msa0156300:intron | 30.0% |
| AACCCCAAAAGCAAAAATTT+GGG | - | chr1_4:22132100-22132119 | None:intergenic | 30.0% | |
| AAACCCCAAAAGCAAAAATT+TGG | - | chr1_4:22132101-22132120 | None:intergenic | 30.0% | |
| !!! | AGTGTTTTTTTATAGTGGCT+AGG | + | chr1_4:22132179-22132198 | Msa0156300:intron | 30.0% |
| !!! | GTGTTTTTTTATAGTGGCTA+GGG | + | chr1_4:22132180-22132199 | Msa0156300:intron | 30.0% |
| TGTATAAAATATGCAAGGTG+CGG | - | chr1_4:22132213-22132232 | None:intergenic | 30.0% | |
| !!! | ACTTACCTTATCGATTTTAG+CGG | + | chr1_4:22132398-22132417 | Msa0156300:intron | 30.0% |
| !! | TTTTGAGTCCAATTTTTGTC+GGG | + | chr1_4:22132491-22132510 | Msa0156300:intron | 30.0% |
| ATTCAATGGATAGAGATAGA+TGG | - | chr1_4:22132609-22132628 | None:intergenic | 30.0% | |
| ! | ACCTTTTTCTCAAAAGACTA+AGG | + | chr1_4:22132699-22132718 | Msa0156300:intron | 30.0% |
| ! | CCTTTTTCTCAAAAGACTAA+GGG | + | chr1_4:22132700-22132719 | Msa0156300:intron | 30.0% |
| ! | CTTTTTCTCAAAAGACTAAG+GGG | + | chr1_4:22132701-22132720 | Msa0156300:intron | 30.0% |
| ! | TTTTTCTCAAAAGACTAAGG+GGG | + | chr1_4:22132702-22132721 | Msa0156300:intron | 30.0% |
| ! | TGTATTGGATTAGGATTCTA+AGG | + | chr1_4:22132726-22132745 | Msa0156300:intron | 30.0% |
| ! | GTATTGGATTAGGATTCTAA+GGG | + | chr1_4:22132727-22132746 | Msa0156300:intron | 30.0% |
| GCAATTATGAAAAAGTCTTG+TGG | + | chr1_4:22132767-22132786 | Msa0156300:intron | 30.0% | |
| TTCATCACTTAAAAGTCTCA+TGG | + | chr1_4:22132886-22132905 | Msa0156300:intron | 30.0% | |
| ! | GACAATCAGGATTTTCAATT+TGG | - | chr1_4:22133294-22133313 | None:intergenic | 30.0% |
| !! | GTATTGGATTAGGATTTTGA+AGG | - | chr1_4:22133387-22133406 | None:intergenic | 30.0% |
| TAGATGACGAGTATTATGAA+GGG | - | chr1_4:22133609-22133628 | None:intergenic | 30.0% | |
| TTAGATGACGAGTATTATGA+AGG | - | chr1_4:22133610-22133629 | None:intergenic | 30.0% | |
| TAAATGATATAACACTCACG+TGG | + | chr1_4:22133754-22133773 | Msa0156300:intron | 30.0% | |
| TGAAATTGTACTGAATTCCT+AGG | - | chr1_4:22133812-22133831 | None:intergenic | 30.0% | |
| ! | TAATTCATCACCTTTTCACT+GGG | - | chr1_4:22133931-22133950 | None:intergenic | 30.0% |
| AATCGATCGATATAGATGTT+TGG | + | chr1_4:22133992-22134011 | Msa0156300:intron | 30.0% | |
| ATCGATCGATATAGATGTTT+GGG | + | chr1_4:22133993-22134012 | Msa0156300:intron | 30.0% | |
| TTCAATACGATGTAAAAGTG+AGG | + | chr1_4:22134115-22134134 | Msa0156300:intron | 30.0% | |
| ! | CTTTAAGCTATTTCACATGA+AGG | + | chr1_4:22134282-22134301 | Msa0156300:intron | 30.0% |
| ! | AGTGAATATCATTTTCATGG+AGG | - | chr1_4:22134323-22134342 | None:intergenic | 30.0% |
| ! | GTGAGTGAATATCATTTTCA+TGG | - | chr1_4:22134326-22134345 | None:intergenic | 30.0% |
| !!! | AGTACAATTTTGGTTTGAGA+TGG | - | chr1_4:22134380-22134399 | None:intergenic | 30.0% |
| !!! | AAGGTTTTGAGATTCTTTGA+TGG | - | chr1_4:22134452-22134471 | None:intergenic | 30.0% |
| TCTCAAAACCTTAAAACTCT+TGG | + | chr1_4:22134460-22134479 | Msa0156300:intron | 30.0% | |
| TTTAATCTTTCCAAATAGGG+TGG | - | chr1_4:22134491-22134510 | None:intergenic | 30.0% | |
| GCTCTTTAATCTTTCCAAAT+AGG | - | chr1_4:22134495-22134514 | None:intergenic | 30.0% | |
| !! | AGATTCTAAGGTTGAAAGTT+AGG | + | chr1_4:22134524-22134543 | Msa0156300:intron | 30.0% |
| !! | GATTCTAAGGTTGAAAGTTA+GGG | + | chr1_4:22134525-22134544 | Msa0156300:intron | 30.0% |
| TTATTAAATAACGCATGTGG+AGG | - | chr1_4:22134599-22134618 | None:intergenic | 30.0% | |
| AGAGATAAATACAAGGTTCA+AGG | + | chr1_4:22134625-22134644 | Msa0156300:intron | 30.0% | |
| ! | CGACTGTTTATGAATTTTGA+GGG | - | chr1_4:22134690-22134709 | None:intergenic | 30.0% |
| TAGATTATATGAGAACCATG+AGG | - | chr1_4:22134766-22134785 | None:intergenic | 30.0% | |
| ! | AGTATTTCTCATCTCTTTTC+GGG | - | chr1_4:22134958-22134977 | None:intergenic | 30.0% |
| ! | GAGTATTTCTCATCTCTTTT+CGG | - | chr1_4:22134959-22134978 | None:intergenic | 30.0% |
| GGAACATAGAAAGTTTGTAT+GGG | - | chr1_4:22135247-22135266 | None:intergenic | 30.0% | |
| AGGAACATAGAAAGTTTGTA+TGG | - | chr1_4:22135248-22135267 | None:intergenic | 30.0% | |
| AAAAAGAAGAAGTGAAAGAG+GGG | - | chr1_4:22135295-22135314 | None:intergenic | 30.0% | |
| CAAAAAAGAAGAAGTGAAAG+AGG | - | chr1_4:22135297-22135316 | None:intergenic | 30.0% | |
| CTACTACTATATACCTAAAG+GGG | - | chr1_4:22135346-22135365 | None:intergenic | 30.0% | |
| GCTACTACTATATACCTAAA+GGG | - | chr1_4:22135347-22135366 | None:intergenic | 30.0% | |
| AGCTACTACTATATACCTAA+AGG | - | chr1_4:22135348-22135367 | None:intergenic | 30.0% | |
| ! | CAAACCTAATTTTACCTCAA+GGG | - | chr1_4:22135416-22135435 | None:intergenic | 30.0% |
| ! | ATGATGATTCTTTTTACCCA+CGG | - | chr1_4:22135466-22135485 | None:intergenic | 30.0% |
| TGGGTAAAAAGAATCATCAT+GGG | + | chr1_4:22135466-22135485 | Msa0156300:intron | 30.0% | |
| ! | AAATAACTTTTTACCCCAAG+AGG | + | chr1_4:22135601-22135620 | Msa0156300:intron | 30.0% |
| ! | AATAACTTTTTACCCCAAGA+GGG | + | chr1_4:22135602-22135621 | Msa0156300:intron | 30.0% |
| TCCATATAATTTACCCTCTT+GGG | - | chr1_4:22135618-22135637 | None:intergenic | 30.0% | |
| ATCCATATAATTTACCCTCT+TGG | - | chr1_4:22135619-22135638 | None:intergenic | 30.0% | |
| ! | TGACATGGATTAACTTAAGA+AGG | - | chr1_4:22136353-22136372 | None:intergenic | 30.0% |
| ! | GGTTAACTTTTATTGGGTTT+TGG | - | chr1_4:22136604-22136623 | None:intergenic | 30.0% |
| AACCCAATAAAAGTTAACCA+AGG | + | chr1_4:22136605-22136624 | Msa0156300:intron | 30.0% | |
| ACCCAATAAAAGTTAACCAA+GGG | + | chr1_4:22136606-22136625 | Msa0156300:intron | 30.0% | |
| ! | TCCCTTGGTTAACTTTTATT+GGG | - | chr1_4:22136610-22136629 | None:intergenic | 30.0% |
| ! | ATCCCTTGGTTAACTTTTAT+TGG | - | chr1_4:22136611-22136630 | None:intergenic | 30.0% |
| TACTCCGGATTTATTCTAAT+GGG | - | chr1_4:22136670-22136689 | None:intergenic | 30.0% | |
| CGGAGAAAAGTTAAAATTGT+TGG | - | chr1_4:22136901-22136920 | None:intergenic | 30.0% | |
| GTAAAGATCACTATGAATGT+CGG | - | chr1_4:22136921-22136940 | None:intergenic | 30.0% | |
| TAGTGATCTTTACATGAAAC+AGG | + | chr1_4:22136928-22136947 | Msa0156300:intron | 30.0% | |
| TGGTTAATTGAGTGAGTTAA+CGG | - | chr1_4:22137298-22137317 | None:intergenic | 30.0% | |
| AGATCTTTATTATGCCTAAC+TGG | - | chr1_4:22137318-22137337 | None:intergenic | 30.0% | |
| !!! | TACTTTTTTGCAATCAAACC+AGG | - | chr1_4:22137853-22137872 | None:intergenic | 30.0% |
| TATCCAACAAAATAAGTAGG+GGG | - | chr1_4:22137901-22137920 | None:intergenic | 30.0% | |
| CAAGGTCTATACTAATTCAA+AGG | + | chr1_4:22138046-22138065 | Msa0156300:intron | 30.0% | |
| AGTAATATTAGTCATGCACA+AGG | + | chr1_4:22138119-22138138 | Msa0156300:intron | 30.0% | |
| GAGTGAAAGAATGTGTTGAA+GGG | - | chr1_4:22130711-22130730 | None:intergenic | 35.0% | |
| AGAGTGAAAGAATGTGTTGA+AGG | - | chr1_4:22130712-22130731 | None:intergenic | 35.0% | |
| ! | TAGATACTTTAGAGGATGCA+TGG | + | chr1_4:22130987-22131006 | Msa0156300:CDS | 35.0% |
| ! | CTTTTGATCACTTGCAACAT+TGG | - | chr1_4:22131034-22131053 | None:intergenic | 35.0% |
| CAATGTTGCAAGTGATCAAA+AGG | + | chr1_4:22131032-22131051 | Msa0156300:CDS | 35.0% | |
| CATTGCTTGAATTTCATGAG+AGG | + | chr1_4:22131109-22131128 | Msa0156300:CDS | 35.0% | |
| CCTCTAATACCAAGAAGAAT+GGG | - | chr1_4:22131685-22131704 | None:intergenic | 35.0% | |
| TCCTCTAATACCAAGAAGAA+TGG | - | chr1_4:22131686-22131705 | None:intergenic | 35.0% | |
| AACACCAAAGATTAGGCAAA+GGG | - | chr1_4:22131749-22131768 | None:intergenic | 35.0% | |
| AAACACCAAAGATTAGGCAA+AGG | - | chr1_4:22131750-22131769 | None:intergenic | 35.0% | |
| TTCCACAAACACCAAAGATT+AGG | - | chr1_4:22131756-22131775 | None:intergenic | 35.0% | |
| GTTCATCCATTCACGATTAT+GGG | - | chr1_4:22131823-22131842 | None:intergenic | 35.0% | |
| AATCGATACAATTACTCCAG+CGG | - | chr1_4:22131923-22131942 | None:intergenic | 35.0% | |
| !! | ATTGTATCGATTTGCATGTG+CGG | + | chr1_4:22131931-22131950 | Msa0156300:intron | 35.0% |
| !!! | GTTTTCTCATGTTTTTAGGG+AGG | + | chr1_4:22131959-22131978 | Msa0156300:intron | 35.0% |
| ! | ACTGTTCAGATTTTTCTTGG+TGG | + | chr1_4:22132021-22132040 | Msa0156300:intron | 35.0% |
| ! | CTGTTCAGATTTTTCTTGGT+GGG | + | chr1_4:22132022-22132041 | Msa0156300:intron | 35.0% |
| ! | TTGTTACTGTAAGCCTTTTG+TGG | + | chr1_4:22132048-22132067 | Msa0156300:intron | 35.0% |
| !! | CTCCCAAATTTTTGCTTTTG+GGG | + | chr1_4:22132095-22132114 | Msa0156300:intron | 35.0% |
| GTATAAAATATGCAAGGTGC+GGG | - | chr1_4:22132212-22132231 | None:intergenic | 35.0% | |
| ACTATCCGCTAAAATCGATA+AGG | - | chr1_4:22132406-22132425 | None:intergenic | 35.0% | |
| TTCATTGACCCGACAAAAAT+TGG | - | chr1_4:22132502-22132521 | None:intergenic | 35.0% | |
| !! | CCCTTAGTCTTTTGAGAAAA+AGG | - | chr1_4:22132703-22132722 | None:intergenic | 35.0% |
| AAACTGGAGAAAGTCTATCA+TGG | - | chr1_4:22133499-22133518 | None:intergenic | 35.0% | |
| TTGAAGTTAGTTGGACAAAC+TGG | - | chr1_4:22133515-22133534 | None:intergenic | 35.0% | |
| AATTCAGTCCAATCTATCCT+AGG | + | chr1_4:22133792-22133811 | Msa0156300:intron | 35.0% | |
| ACTGAATTCCTAGGATAGAT+TGG | - | chr1_4:22133803-22133822 | None:intergenic | 35.0% | |
| ! | CTAATTCATCACCTTTTCAC+TGG | - | chr1_4:22133932-22133951 | None:intergenic | 35.0% |
| AAAATAAGCCTAAGGCAGAT+TGG | + | chr1_4:22134070-22134089 | Msa0156300:intron | 35.0% | |
| AATCATCCACATTGCTTTAG+CGG | - | chr1_4:22134199-22134218 | None:intergenic | 35.0% | |
| ATGATTCAAAACCTTCCATG+AGG | + | chr1_4:22134213-22134232 | Msa0156300:intron | 35.0% | |
| TGATTCAAAACCTTCCATGA+GGG | + | chr1_4:22134214-22134233 | Msa0156300:intron | 35.0% | |
| !! | TTTTGATTGCTTAACGTCCT+CGG | - | chr1_4:22134242-22134261 | None:intergenic | 35.0% |
| ! | AAGCTATTTCACATGAAGGA+TGG | + | chr1_4:22134286-22134305 | Msa0156300:intron | 35.0% |
| ! | TATCATTTTCATGGAGGAGA+TGG | - | chr1_4:22134317-22134336 | None:intergenic | 35.0% |
| TAAGATGCATGTCTAGAGAA+TGG | + | chr1_4:22134410-22134429 | Msa0156300:intron | 35.0% | |
| ! | TGGTGATTCCAAGAGTTTTA+AGG | - | chr1_4:22134471-22134490 | None:intergenic | 35.0% |
| CTTTCAACCTTAGAATCTCA+TGG | - | chr1_4:22134522-22134541 | None:intergenic | 35.0% | |
| GGAATGAATTATGCATGCTT+GGG | - | chr1_4:22134669-22134688 | None:intergenic | 35.0% | |
| ! | GCGACTGTTTATGAATTTTG+AGG | - | chr1_4:22134691-22134710 | None:intergenic | 35.0% |
| GTATATCATCATACACCTCA+TGG | + | chr1_4:22134748-22134767 | Msa0156300:intron | 35.0% | |
| ACTATGCCATTCTATTGGAT+GGG | - | chr1_4:22134929-22134948 | None:intergenic | 35.0% | |
| ATCCAATAGAATGGCATAGT+CGG | + | chr1_4:22134929-22134948 | Msa0156300:intron | 35.0% | |
| AAAAGAAGAAGTGAAAGAGG+GGG | - | chr1_4:22135294-22135313 | None:intergenic | 35.0% | |
| TAGGATCTTTATACCCCTTT+AGG | + | chr1_4:22135330-22135349 | Msa0156300:intron | 35.0% | |
| AGGTATATAGTAGTAGCTCT+TGG | + | chr1_4:22135350-22135369 | Msa0156300:intron | 35.0% | |
| GGTATATAGTAGTAGCTCTT+GGG | + | chr1_4:22135351-22135370 | Msa0156300:intron | 35.0% | |
| ! | AAATAGTGGTCATTCGAGTT+GGG | + | chr1_4:22135376-22135395 | Msa0156300:intron | 35.0% |
| TCATCCCTTGAGGTAAAATT+AGG | + | chr1_4:22135409-22135428 | Msa0156300:intron | 35.0% | |
| ! | GCAAACCTAATTTTACCTCA+AGG | - | chr1_4:22135417-22135436 | None:intergenic | 35.0% |
| ! | TCCCAAATTCTTTTTACCGT+GGG | + | chr1_4:22135447-22135466 | Msa0156300:intron | 35.0% |
| ACCCACGGTAAAAAGAATTT+GGG | - | chr1_4:22135451-22135470 | None:intergenic | 35.0% | |
| TACCCACGGTAAAAAGAATT+TGG | - | chr1_4:22135452-22135471 | None:intergenic | 35.0% | |
| GTGGGTAAAAAGAATCATCA+TGG | + | chr1_4:22135465-22135484 | Msa0156300:intron | 35.0% | |
| GGGTAAAAAGAATCATCATG+GGG | + | chr1_4:22135467-22135486 | Msa0156300:intron | 35.0% | |
| GGTAAAAAGAATCATCATGG+GGG | + | chr1_4:22135468-22135487 | Msa0156300:intron | 35.0% | |
| ! | AATCATCATGGGGGTATAAA+AGG | + | chr1_4:22135477-22135496 | Msa0156300:intron | 35.0% |
| AAAATGACATCAAGATCCCT+TGG | - | chr1_4:22135521-22135540 | None:intergenic | 35.0% | |
| GTATCTAACAATAGCTCTTG+GGG | - | chr1_4:22135569-22135588 | None:intergenic | 35.0% | |
| GGTATCTAACAATAGCTCTT+GGG | - | chr1_4:22135570-22135589 | None:intergenic | 35.0% | |
| CCATATAATTTACCCTCTTG+GGG | - | chr1_4:22135617-22135636 | None:intergenic | 35.0% | |
| !! | AATGCACAAGTTAAGTTGAG+TGG | - | chr1_4:22136094-22136113 | None:intergenic | 35.0% |
| ! | TAACTTGGATAGGGGAATTT+TGG | + | chr1_4:22136133-22136152 | Msa0156300:intron | 35.0% |
| ! | AACTTGGATAGGGGAATTTT+GGG | + | chr1_4:22136134-22136153 | Msa0156300:intron | 35.0% |
| GTACTCCGGATTTATTCTAA+TGG | - | chr1_4:22136671-22136690 | None:intergenic | 35.0% | |
| TTAGAATAAATCCGGAGTAC+TGG | + | chr1_4:22136671-22136690 | Msa0156300:intron | 35.0% | |
| !!! | TGTACTTTTTTCCAGTACTC+CGG | - | chr1_4:22136685-22136704 | None:intergenic | 35.0% |
| CACATTGAGTTAATGCACAT+CGG | + | chr1_4:22136853-22136872 | Msa0156300:intron | 35.0% | |
| CTTTCTTTCTGTATATCTCG+TGG | - | chr1_4:22137059-22137078 | None:intergenic | 35.0% | |
| GATACATTGTTCTACCTTAG+AGG | - | chr1_4:22137267-22137286 | None:intergenic | 35.0% | |
| ACTCACTCAATTAACCAGTT+AGG | + | chr1_4:22137301-22137320 | Msa0156300:intron | 35.0% | |
| ATAATAATGATCGAGCTGTC+CGG | + | chr1_4:22137431-22137450 | Msa0156300:intron | 35.0% | |
| AAAAGTGAACCATACCTTGA+GGG | + | chr1_4:22137615-22137634 | Msa0156300:intron | 35.0% | |
| ! | ATAATCAACTCCGGATTTTG+CGG | + | chr1_4:22137674-22137693 | Msa0156300:intron | 35.0% |
| TTGCAACAGAGTAAATTACC+TGG | + | chr1_4:22137832-22137851 | Msa0156300:intron | 35.0% | |
| GATTGCAAAAAAGTAAGCAG+CGG | + | chr1_4:22137858-22137877 | Msa0156300:intron | 35.0% | |
| ATCCAACAAAATAAGTAGGG+GGG | - | chr1_4:22137900-22137919 | None:intergenic | 35.0% | |
| AGTAGACTATACAAGTGATG+AGG | + | chr1_4:22137955-22137974 | Msa0156300:intron | 35.0% | |
| CTATTCATAGAAGAAACGGA+AGG | - | chr1_4:22138095-22138114 | None:intergenic | 35.0% | |
| CAATGATGTAGACACTATAG+AGG | + | chr1_4:22138187-22138206 | Msa0156300:intron | 35.0% | |
| ! | TTTTGATCCACTTGCAACAT+TGG | - | chr1_4:22138242-22138261 | None:intergenic | 35.0% |
| AATGTTGCAAGTGGATCAAA+AGG | + | chr1_4:22138241-22138260 | Msa0156300:CDS | 35.0% | |
| CATTGCTTGAATTTCATGAG+AGG | + | chr1_4:22131109-22131128 | Msa0156300:CDS | 35.0% | |
| TTAAACCAGCCAAGAAAGCA+TGG | + | chr1_4:22130618-22130637 | Msa0156300:CDS | 40.0% | |
| GAAGTTCTTCCATGCTTTCT+TGG | - | chr1_4:22130630-22130649 | None:intergenic | 40.0% | |
| TGAGGTTATGAGATGAGTGA+GGG | - | chr1_4:22130741-22130760 | None:intergenic | 40.0% | |
| TTGAGGTTATGAGATGAGTG+AGG | - | chr1_4:22130742-22130761 | None:intergenic | 40.0% | |
| ATGTATCCACCCATTCTTCT+TGG | + | chr1_4:22131673-22131692 | Msa0156300:intron | 40.0% | |
| CTAATACCAAGAAGAATGGG+TGG | - | chr1_4:22131682-22131701 | None:intergenic | 40.0% | |
| CCCATTCTTCTTGGTATTAG+AGG | + | chr1_4:22131682-22131701 | Msa0156300:intron | 40.0% | |
| ATGACCCTTTGCCTAATCTT+TGG | + | chr1_4:22131742-22131761 | Msa0156300:intron | 40.0% | |
| !! | TGCCTAATCTTTGGTGTTTG+TGG | + | chr1_4:22131751-22131770 | Msa0156300:intron | 40.0% |
| TAGTGATAGGAGACCAAGAA+TGG | - | chr1_4:22131779-22131798 | None:intergenic | 40.0% | |
| GGTTCATCCATTCACGATTA+TGG | - | chr1_4:22131824-22131843 | None:intergenic | 40.0% | |
| ATCGTGAATGGATGAACCAT+TGG | + | chr1_4:22131826-22131845 | Msa0156300:intron | 40.0% | |
| ! | TCGAGTCACTTTCAATCCAA+TGG | - | chr1_4:22131845-22131864 | None:intergenic | 40.0% |
| ATGAGATTTGGAAGCCTGAA+TGG | - | chr1_4:22131874-22131893 | None:intergenic | 40.0% | |
| AATACAAGAAGGAGGAGACT+AGG | - | chr1_4:22132127-22132146 | None:intergenic | 40.0% | |
| TAAGGGAAGCCAATGTCTTA+CGG | + | chr1_4:22132283-22132302 | Msa0156300:intron | 40.0% | |
| TCAAAGACACCGTAAGACAT+TGG | - | chr1_4:22132295-22132314 | None:intergenic | 40.0% | |
| AGAGATAGATGGACGTGATT+TGG | - | chr1_4:22132598-22132617 | None:intergenic | 40.0% | |
| TCCATTGAATCAGTTTGTCG+AGG | + | chr1_4:22132619-22132638 | Msa0156300:intron | 40.0% | |
| AAAGACTAAGGGGGATGTAT+TGG | + | chr1_4:22132711-22132730 | Msa0156300:intron | 40.0% | |
| TAAGGGGGATGTATTGGATT+AGG | + | chr1_4:22132717-22132736 | Msa0156300:intron | 40.0% | |
| ! | TCATTTGGTTCCCAGTGAAA+AGG | + | chr1_4:22133918-22133937 | Msa0156300:intron | 40.0% |
| TGTCGTGCAAAATAAGCCTA+AGG | + | chr1_4:22134062-22134081 | Msa0156300:intron | 40.0% | |
| ! | GGTTTGAGATGGTCTATCAT+AGG | - | chr1_4:22134369-22134388 | None:intergenic | 40.0% |
| AGCATGACCATGAGATTCTA+AGG | + | chr1_4:22134512-22134531 | Msa0156300:intron | 40.0% | |
| ! | TCTAAGGTTGAAAGTTAGGG+AGG | + | chr1_4:22134528-22134547 | Msa0156300:intron | 40.0% |
| TTAAATAACGCATGTGGAGG+TGG | - | chr1_4:22134596-22134615 | None:intergenic | 40.0% | |
| TGCATGCTTGGGATTATTGA+AGG | - | chr1_4:22134658-22134677 | None:intergenic | 40.0% | |
| GGGAATGAATTATGCATGCT+TGG | - | chr1_4:22134670-22134689 | None:intergenic | 40.0% | |
| ! | CTAGTTGTAGGCTCTGATTT+AGG | - | chr1_4:22134822-22134841 | None:intergenic | 40.0% |
| CTATGCCATTCTATTGGATG+GGG | - | chr1_4:22134928-22134947 | None:intergenic | 40.0% | |
| GACTATGCCATTCTATTGGA+TGG | - | chr1_4:22134930-22134949 | None:intergenic | 40.0% | |
| TTCCGACTATGCCATTCTAT+TGG | - | chr1_4:22134934-22134953 | None:intergenic | 40.0% | |
| GAAATAGTGGTCATTCGAGT+TGG | + | chr1_4:22135375-22135394 | Msa0156300:intron | 40.0% | |
| !! | AATAGTGGTCATTCGAGTTG+GGG | + | chr1_4:22135377-22135396 | Msa0156300:intron | 40.0% |
| GAAAAAGACATCATCCCTTG+AGG | + | chr1_4:22135399-22135418 | Msa0156300:intron | 40.0% | |
| ! | CTCCCAAATTCTTTTTACCG+TGG | + | chr1_4:22135446-22135465 | Msa0156300:intron | 40.0% |
| !!! | TGATGTCATTTTCCCAGAAC+AGG | + | chr1_4:22135529-22135548 | Msa0156300:intron | 40.0% |
| ATAATGATCCGTCCTGTTCT+GGG | - | chr1_4:22135544-22135563 | None:intergenic | 40.0% | |
| AATAATGATCCGTCCTGTTC+TGG | - | chr1_4:22135545-22135564 | None:intergenic | 40.0% | |
| CCCCAAGAGGGTAAATTATA+TGG | + | chr1_4:22135614-22135633 | Msa0156300:intron | 40.0% | |
| TACACTTGCGCAAGTTAACT+TGG | + | chr1_4:22136118-22136137 | Msa0156300:intron | 40.0% | |
| ! | TTGCGCAAGTTAACTTGGAT+AGG | + | chr1_4:22136123-22136142 | Msa0156300:intron | 40.0% |
| ! | TGCGCAAGTTAACTTGGATA+GGG | + | chr1_4:22136124-22136143 | Msa0156300:intron | 40.0% |
| AAGCTATTGCCAAGTGTGAA+GGG | - | chr1_4:22136291-22136310 | None:intergenic | 40.0% | |
| AAAGCTATTGCCAAGTGTGA+AGG | - | chr1_4:22136292-22136311 | None:intergenic | 40.0% | |
| !!! | ATGCACATCGGTTTTTCTTG+TGG | + | chr1_4:22136865-22136884 | Msa0156300:intron | 40.0% |
| TATATCTCGTGGTACTCGAT+GGG | - | chr1_4:22137048-22137067 | None:intergenic | 40.0% | |
| ! | TTAGCCTTTCGTGATAGAGA+AGG | + | chr1_4:22137388-22137407 | Msa0156300:intron | 40.0% |
| TAGCCTTTCGTGATAGAGAA+GGG | + | chr1_4:22137389-22137408 | Msa0156300:intron | 40.0% | |
| !! | TGATAATGGATGAGAGGCAA+CGG | + | chr1_4:22137454-22137473 | Msa0156300:intron | 40.0% |
| GAAAAGTGAACCATACCTTG+AGG | + | chr1_4:22137614-22137633 | Msa0156300:intron | 40.0% | |
| GCATTGGGAATAATCAACTC+CGG | + | chr1_4:22137665-22137684 | Msa0156300:intron | 40.0% | |
| CAAAAAAGTAAGCAGCGGTT+AGG | + | chr1_4:22137863-22137882 | Msa0156300:intron | 40.0% | |
| !!! | ATCCCCCCTACTTATTTTGT+TGG | + | chr1_4:22137895-22137914 | Msa0156300:intron | 40.0% |
| TAGTATAGACCTTGCACGTA+AGG | - | chr1_4:22138040-22138059 | None:intergenic | 40.0% | |
| TAGACACTATAGAGGATGCA+TGG | + | chr1_4:22138195-22138214 | Msa0156300:intron | 40.0% | |
| TTCTTCCATGCTTTCTTGGC+TGG | - | chr1_4:22130626-22130645 | None:intergenic | 45.0% | |
| CATGGCAAGTAGTGGTTTCT+AGG | + | chr1_4:22131005-22131024 | Msa0156300:intron | 45.0% | |
| GGTGTTTGTGGAACCATTCT+TGG | + | chr1_4:22131763-22131782 | Msa0156300:intron | 45.0% | |
| AGCAGACCCATAATCGTGAA+TGG | + | chr1_4:22131814-22131833 | Msa0156300:intron | 45.0% | |
| AATTACTCCAGCGGTTACGA+AGG | - | chr1_4:22131914-22131933 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr1_4:22132240-22132259 | None:intergenic | 45.0% | |
| ! | GCCTCGACAAACTGATTCAA+TGG | - | chr1_4:22132623-22132642 | None:intergenic | 45.0% |
| ! | TTTGTCGAGGCATTCTTGCA+TGG | + | chr1_4:22132632-22132651 | Msa0156300:intron | 45.0% |
| GAGAGAGTAGAGAAGGAAGA+AGG | - | chr1_4:22133062-22133081 | None:intergenic | 45.0% | |
| AGTAGAGGAGAGAGTAGAGA+AGG | - | chr1_4:22133069-22133088 | None:intergenic | 45.0% | |
| ATGAGATGAGAGAGAGAGAG+AGG | - | chr1_4:22133106-22133125 | None:intergenic | 45.0% | |
| GGGATGTTGTTGTCAACTGA+TGG | + | chr1_4:22134013-22134032 | Msa0156300:intron | 45.0% | |
| TCATCTGTCCAATCTGCCTT+AGG | - | chr1_4:22134081-22134100 | None:intergenic | 45.0% | |
| ATACTCGTTTACGACGAGTG+TGG | - | chr1_4:22134154-22134173 | None:intergenic | 45.0% | |
| GTAAGACCGCTAAAGCAATG+TGG | + | chr1_4:22134190-22134209 | Msa0156300:intron | 45.0% | |
| CTTGGAATCACCACCCTATT+TGG | + | chr1_4:22134478-22134497 | Msa0156300:intron | 45.0% | |
| AGCCTACAACTAGACTCCAA+AGG | + | chr1_4:22134829-22134848 | Msa0156300:intron | 45.0% | |
| !! | TGCCTTTGGAGTCTAGTTGT+AGG | - | chr1_4:22134834-22134853 | None:intergenic | 45.0% |
| !!! | CCTTGCTTTTTGCTTGCCTT+TGG | - | chr1_4:22134848-22134867 | None:intergenic | 45.0% |
| CCAAAGGCAAGCAAAAAGCA+AGG | + | chr1_4:22134845-22134864 | Msa0156300:intron | 45.0% | |
| !! | GTCATTTTCCCAGAACAGGA+CGG | + | chr1_4:22135533-22135552 | Msa0156300:intron | 45.0% |
| ! | GCGCAAGTTAACTTGGATAG+GGG | + | chr1_4:22136125-22136144 | Msa0156300:intron | 45.0% |
| CATGTTCTTCCCTTCACACT+TGG | + | chr1_4:22136279-22136298 | Msa0156300:intron | 45.0% | |
| GTATATCTCGTGGTACTCGA+TGG | - | chr1_4:22137049-22137068 | None:intergenic | 45.0% | |
| TGTCCCTTCTCTATCACGAA+AGG | - | chr1_4:22137395-22137414 | None:intergenic | 45.0% | |
| TGCCTCTCATCCATTATCAC+CGG | - | chr1_4:22137453-22137472 | None:intergenic | 45.0% | |
| AGTCTTTGCGGTGTAACGAA+AGG | + | chr1_4:22137517-22137536 | Msa0156300:intron | 45.0% | |
| TCCAACGCTCAAGTCATTGA+TGG | + | chr1_4:22137561-22137580 | Msa0156300:intron | 45.0% | |
| TCCATCAATGACTTGAGCGT+TGG | - | chr1_4:22137565-22137584 | None:intergenic | 45.0% | |
| ATTGCTTCACCCTCAAGGTA+TGG | - | chr1_4:22137627-22137646 | None:intergenic | 45.0% | |
| GAAGCAATGCCACCCTTATT+AGG | + | chr1_4:22137639-22137658 | Msa0156300:intron | 45.0% | |
| TAATCACACGCCGCAAAATC+CGG | - | chr1_4:22137687-22137706 | None:intergenic | 45.0% | |
| ! | GATTTTGCGGCGTGTGATTA+GGG | + | chr1_4:22137687-22137706 | Msa0156300:intron | 45.0% |
| ACGGTTAGAGGACACATGTA+GGG | + | chr1_4:22137710-22137729 | Msa0156300:intron | 45.0% | |
| TATACAAGTGATGAGGCCGT+TGG | + | chr1_4:22137962-22137981 | Msa0156300:intron | 45.0% | |
| ATACAAGTGATGAGGCCGTT+GGG | + | chr1_4:22137963-22137982 | Msa0156300:intron | 45.0% | |
| ACTAGGTTAGAACGTCCCAA+CGG | - | chr1_4:22137981-22138000 | None:intergenic | 45.0% | |
| TTGGGACGTTCTAACCTAGT+CGG | + | chr1_4:22137981-22138000 | Msa0156300:intron | 45.0% | |
| AGAGGATGCATGGAAAGTTG+TGG | + | chr1_4:22138205-22138224 | Msa0156300:CDS | 45.0% | |
| CATGGAAAGTTGTGGTTGCT+AGG | + | chr1_4:22138213-22138232 | Msa0156300:CDS | 45.0% | |
| TAGGTCTCCAATGTTGCAAG+TGG | + | chr1_4:22131024-22131043 | Msa0156300:intron | 45.0% | |
| !!! | TGTATTTTATTATATAAAAT+TGG | + | chr1_4:22131484-22131503 | Msa0156300:intron | 5.0% |
| !! | CATAAATATTATTAAAAAAA+AGG | - | chr1_4:22132159-22132178 | None:intergenic | 5.0% |
| !!! | ATAATTATTTTACATATTAA+TGG | + | chr1_4:22136807-22136826 | Msa0156300:intron | 5.0% |
| AGAGGATGCATGGCAAGTAG+TGG | + | chr1_4:22130997-22131016 | Msa0156300:CDS | 50.0% | |
| TGACTCGAAGCTTGCCATTC+AGG | + | chr1_4:22131857-22131876 | Msa0156300:intron | 50.0% | |
| ATCTGAACAGTCATGCCCCA+AGG | - | chr1_4:22132012-22132031 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr1_4:22132241-22132260 | None:intergenic | 50.0% | |
| ACTCGTGAGCTTAGCTCAGT+TGG | - | chr1_4:22132245-22132264 | None:intergenic | 50.0% | |
| GAGATGAGACGAGAGAGTAG+AGG | - | chr1_4:22133084-22133103 | None:intergenic | 50.0% | |
| AACACTCACGTGGCAGCTAA+TGG | + | chr1_4:22133764-22133783 | Msa0156300:intron | 50.0% | |
| GTCTGCCCCATCCAATAGAA+TGG | + | chr1_4:22134920-22134939 | Msa0156300:intron | 50.0% | |
| GAGTGGGAGGAGATAATGTG+AGG | - | chr1_4:22135268-22135287 | None:intergenic | 50.0% | |
| GTAGCTCTTGGGCGAAATAG+TGG | + | chr1_4:22135362-22135381 | Msa0156300:intron | 50.0% | |
| GTTGAGTGGCGTGAGTTATG+TGG | - | chr1_4:22136080-22136099 | None:intergenic | 50.0% | |
| ! | GGATAGGGGAATTTTGGGCA+TGG | + | chr1_4:22136139-22136158 | Msa0156300:intron | 50.0% |
| ! | AGCGCGAATGTTTTGTGCTG+AGG | + | chr1_4:22136168-22136187 | Msa0156300:intron | 50.0% |
| ! | GCGCGAATGTTTTGTGCTGA+GGG | + | chr1_4:22136169-22136188 | Msa0156300:intron | 50.0% |
| AGGGACAAGGTGAAATCCCT+TGG | - | chr1_4:22136625-22136644 | None:intergenic | 50.0% | |
| ATCGAGCTGTCCGGTGATAA+TGG | + | chr1_4:22137440-22137459 | Msa0156300:intron | 50.0% | |
| !! | GTCCGGTGATAATGGATGAG+AGG | + | chr1_4:22137448-22137467 | Msa0156300:intron | 50.0% |
| ! | TAATGGATGAGAGGCAACGG+TGG | + | chr1_4:22137457-22137476 | Msa0156300:intron | 50.0% |
| CAAAGACTCATCGCCACCAT+TGG | - | chr1_4:22137505-22137524 | None:intergenic | 50.0% | |
| ! | ATGGTGGCGATGAGTCTTTG+CGG | + | chr1_4:22137505-22137524 | Msa0156300:intron | 50.0% |
| !! | GTGTAACGAAAGGTACCTGC+AGG | + | chr1_4:22137527-22137546 | Msa0156300:intron | 50.0% |
| ACCCTTATTAGGCGCGCATT+GGG | + | chr1_4:22137650-22137669 | Msa0156300:intron | 50.0% | |
| TCCCAATGCGCGCCTAATAA+GGG | - | chr1_4:22137654-22137673 | None:intergenic | 50.0% | |
| TTCCCAATGCGCGCCTAATA+AGG | - | chr1_4:22137655-22137674 | None:intergenic | 50.0% | |
| ! | GGATTTTGCGGCGTGTGATT+AGG | + | chr1_4:22137686-22137705 | Msa0156300:intron | 50.0% |
| GTGTGATTAGGGACGGTTAG+AGG | + | chr1_4:22137698-22137717 | Msa0156300:intron | 50.0% | |
| GACGGTTAGAGGACACATGT+AGG | + | chr1_4:22137709-22137728 | Msa0156300:intron | 50.0% | |
| ATGTAGGGTGATCCTCACGT+GGG | + | chr1_4:22137725-22137744 | Msa0156300:intron | 50.0% | |
| !! | GTGCAGGTTGATAACCGACT+AGG | - | chr1_4:22137998-22138017 | None:intergenic | 50.0% |
| AGGATCACTGTGCGATCAAC+AGG | - | chr1_4:22138020-22138039 | None:intergenic | 50.0% | |
| CACAGTGATCCTTACGTGCA+AGG | + | chr1_4:22138028-22138047 | Msa0156300:intron | 50.0% | |
| TGCTGACAAGCTAGCAGCCT+TGG | + | chr1_4:22131992-22132011 | Msa0156300:intron | 55.0% | |
| GCTGACAAGCTAGCAGCCTT+GGG | + | chr1_4:22131993-22132012 | Msa0156300:intron | 55.0% | |
| CTGACAAGCTAGCAGCCTTG+GGG | + | chr1_4:22131994-22132013 | Msa0156300:intron | 55.0% | |
| !! | AACCTTCCATGAGGGTACCG+AGG | + | chr1_4:22134222-22134241 | Msa0156300:intron | 55.0% |
| TAACGTCCTCGGTACCCTCA+TGG | - | chr1_4:22134231-22134250 | None:intergenic | 55.0% | |
| CGCGTGATCGTGTGTACTCA+GGG | - | chr1_4:22134885-22134904 | None:intergenic | 55.0% | |
| ACGCGTGATCGTGTGTACTC+AGG | - | chr1_4:22134886-22134905 | None:intergenic | 55.0% | |
| GTGAAAGAGGGGGAGAGAGT+GGG | - | chr1_4:22135284-22135303 | None:intergenic | 55.0% | |
| AGTGAAAGAGGGGGAGAGAG+TGG | - | chr1_4:22135285-22135304 | None:intergenic | 55.0% | |
| ATGCTCCGGCATAACGCCAA+TGG | + | chr1_4:22137486-22137505 | Msa0156300:intron | 55.0% | |
| GTGGCATTGCTTCACCCTCA+AGG | - | chr1_4:22137632-22137651 | None:intergenic | 55.0% | |
| CAATGCGCGCCTAATAAGGG+TGG | - | chr1_4:22137651-22137670 | None:intergenic | 55.0% | |
| CACCCTTATTAGGCGCGCAT+TGG | + | chr1_4:22137649-22137668 | Msa0156300:intron | 55.0% | |
| TTGCGGCGTGTGATTAGGGA+CGG | + | chr1_4:22137691-22137710 | Msa0156300:intron | 55.0% | |
| CATGTAGGGTGATCCTCACG+TGG | + | chr1_4:22137724-22137743 | Msa0156300:intron | 55.0% | |
| TGTAGGGTGATCCTCACGTG+GGG | + | chr1_4:22137726-22137745 | Msa0156300:intron | 55.0% | |
| ACTGTGCGATCAACAGGTGC+AGG | - | chr1_4:22138014-22138033 | None:intergenic | 55.0% | |
| CTTGGGACCTTCGTAACCGC+TGG | + | chr1_4:22131904-22131923 | Msa0156300:intron | 60.0% | |
| GTCCTCGGTACCCTCATGGA+AGG | - | chr1_4:22134227-22134246 | None:intergenic | 60.0% | |
| ATTGGATGGGGCAGACGTGC+AGG | - | chr1_4:22134916-22134935 | None:intergenic | 60.0% | |
| AAAGAGGGGGAGAGAGTGGG+AGG | - | chr1_4:22135281-22135300 | None:intergenic | 60.0% | |
| TGGATGAGAGGCAACGGTGG+CGG | + | chr1_4:22137460-22137479 | Msa0156300:intron | 60.0% | |
| !! | AACGGTGGCGGAAGATGCTC+CGG | + | chr1_4:22137472-22137491 | Msa0156300:intron | 60.0% |
| CTCCGGCATAACGCCAATGG+TGG | + | chr1_4:22137489-22137508 | Msa0156300:intron | 60.0% | |
| CGCCACCATTGGCGTTATGC+CGG | - | chr1_4:22137494-22137513 | None:intergenic | 60.0% | |
| ! | TGGAGTGCTAACGTGCCTGC+AGG | - | chr1_4:22137545-22137564 | None:intergenic | 60.0% |
| GTAGGGTGATCCTCACGTGG+GGG | + | chr1_4:22137727-22137746 | Msa0156300:intron | 60.0% | |
| TACGAGAACACCCCCACGTG+AGG | - | chr1_4:22137740-22137759 | None:intergenic | 60.0% | |
| GGGGCAGACGTGCAGGACTG+AGG | - | chr1_4:22134909-22134928 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 22130590 | 22138358 | 22130590 | ID=Msa0156300;Name=Msa0156300 |
| chr1_4 | mRNA | 22130590 | 22138358 | 22130590 | ID=Msa0156300-mRNA-1;Parent=Msa0156300;Name=Msa0156300-mRNA-1;_AED=0.16;_eAED=0.18;_QI=0|0|0|1|0|0|4|0|205 |
| chr1_4 | exon | 22130590 | 22130764 | 22130590 | ID=Msa0156300-mRNA-1:exon:7978;Parent=Msa0156300-mRNA-1 |
| chr1_4 | exon | 22130852 | 22131018 | 22130852 | ID=Msa0156300-mRNA-1:exon:7979;Parent=Msa0156300-mRNA-1 |
| chr1_4 | exon | 22131027 | 22131141 | 22131027 | ID=Msa0156300-mRNA-1:exon:7980;Parent=Msa0156300-mRNA-1 |
| chr1_4 | exon | 22138198 | 22138358 | 22138198 | ID=Msa0156300-mRNA-1:exon:7981;Parent=Msa0156300-mRNA-1 |
| chr1_4 | CDS | 22130590 | 22130764 | 22130590 | ID=Msa0156300-mRNA-1:cds;Parent=Msa0156300-mRNA-1 |
| chr1_4 | CDS | 22130852 | 22131018 | 22130852 | ID=Msa0156300-mRNA-1:cds;Parent=Msa0156300-mRNA-1 |
| chr1_4 | CDS | 22131027 | 22131141 | 22131027 | ID=Msa0156300-mRNA-1:cds;Parent=Msa0156300-mRNA-1 |
| chr1_4 | CDS | 22138198 | 22138358 | 22138198 | ID=Msa0156300-mRNA-1:cds;Parent=Msa0156300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
