AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546520 MtrunA17_Chr4g0028201 96.809 470 10 2 1 470 1 465 0.0 936
Msa0546520 MtrunA17_Chr2g0320251 72.078 462 104 3 7 466 5 443 0.0 683
Msa0546520 MtrunA17_Chr8g0385651 42.700 363 201 5 97 456 35 393 1.52e-101 310
Msa0546520 MtrunA17_Chr8g0385671 42.424 363 202 5 97 456 35 393 4.36e-101 308
Msa0546520 MtrunA17_Chr1g0179651 28.775 351 208 12 110 449 11 330 1.61e-33 129
Msa0546520 MtrunA17_Chr7g0265461 27.907 344 219 7 110 449 71 389 5.40e-33 129
Msa0546520 MtrunA17_Chr5g0411991 26.301 346 218 8 110 449 92 406 2.13e-32 127
Msa0546520 MtrunA17_Chr7g0265451 29.107 347 211 9 110 449 188 506 3.68e-31 125
Msa0546520 MtrunA17_Chr1g0173651 28.533 375 188 14 114 421 356 717 9.63e-31 126
Msa0546520 MtrunA17_Chr3g0131051 27.532 316 202 7 110 421 164 456 1.24e-27 115
Msa0546520 MtrunA17_Chr4g0055991 28.716 296 184 7 155 437 244 525 1.26e-27 115
Msa0546520 MtrunA17_Chr3g0137491 26.531 392 247 12 72 449 18 382 9.51e-26 108
Msa0546520 MtrunA17_Chr3g0119721 27.273 352 211 14 110 449 17 335 2.51e-25 106
Msa0546520 MtrunA17_Chr3g0120131 26.705 352 213 13 110 449 155 473 3.28e-24 105
Msa0546520 MtrunA17_Chr7g0253441 27.129 317 195 11 138 449 187 472 4.77e-24 104
Msa0546520 MtrunA17_Chr4g0064471 26.220 328 205 10 135 449 158 461 1.83e-23 102
Msa0546520 MtrunA17_Chr4g0064461 27.203 261 170 5 189 449 216 456 2.51e-23 102
Msa0546520 MtrunA17_Chr4g0039811 25.000 340 208 9 112 421 112 434 1.58e-21 97.4
Msa0546520 MtrunA17_Chr7g0265381 26.140 329 195 10 137 449 69 365 1.97e-21 95.9
Msa0546520 MtrunA17_Chr4g0064411 25.000 304 203 7 151 449 170 453 3.53e-21 95.9
Msa0546520 MtrunA17_Chr8g0390121 27.933 358 199 14 112 449 283 601 1.29e-20 95.1
Msa0546520 MtrunA17_Chr1g0197381 26.053 380 229 15 77 437 191 537 2.10e-20 94.0
Msa0546520 MtrunA17_Chr3g0140131 24.309 362 210 11 110 449 266 585 1.13e-19 92.0
Msa0546520 MtrunA17_Chr1g0146181 26.766 269 152 8 194 449 342 578 3.02e-18 87.4
Msa0546520 MtrunA17_Chr1g0200871 27.240 279 153 7 154 401 139 398 6.85e-16 80.1
Msa0546520 MtrunA17_Chr3g0092341 24.324 333 193 10 112 406 115 426 2.95e-15 78.2
Msa0546520 MtrunA17_Chr4g0043801 27.431 288 165 11 153 421 159 421 1.24e-14 75.9
Msa0546520 MtrunA17_Chr6g0460631 24.474 380 226 13 112 453 113 469 1.54e-14 75.9
Msa0546520 MtrunA17_Chr7g0254391 22.819 447 278 16 63 466 69 491 4.48e-14 74.3
Msa0546520 MtrunA17_Chr3g0122631 23.224 366 219 13 78 409 22 359 8.95e-14 73.2
Msa0546520 MtrunA17_Chr5g0421571 31.852 135 79 4 110 244 145 266 1.10e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546520 AT2G28110.1 64.732 448 141 6 23 460 4 444 0.0 607
Msa0546520 AT5G22940.1 64.569 429 141 5 43 469 49 468 0.0 568
Msa0546520 AT5G22940.2 61.693 449 150 4 43 469 49 497 0.0 568
Msa0546520 AT5G61840.1 41.848 368 208 5 88 453 24 387 4.91e-101 309
Msa0546520 AT1G27440.1 41.620 358 204 4 97 453 31 384 1.23e-99 305
Msa0546520 AT4G16745.1 29.288 379 222 14 77 437 171 521 5.37e-32 129
Msa0546520 AT4G38040.1 26.879 346 216 9 110 449 102 416 1.51e-31 125
Msa0546520 AT4G16745.2 29.919 371 212 15 77 428 171 512 1.06e-30 125
Msa0546520 AT4G38040.2 27.358 318 196 8 110 421 102 390 1.07e-30 123
Msa0546520 AT3G57630.3 28.409 352 174 10 114 399 350 689 4.20e-29 121
Msa0546520 AT3G57630.1 28.409 352 174 10 114 399 350 689 4.20e-29 121
Msa0546520 AT3G57630.2 28.409 352 174 10 114 399 348 687 4.35e-29 121
Msa0546520 AT5G11130.2 29.412 306 185 8 151 449 42 323 1.31e-28 115
Msa0546520 AT5G11130.1 29.412 306 185 8 151 449 186 467 6.33e-28 116
Msa0546520 AT5G33290.1 28.173 323 196 9 138 449 192 489 2.28e-26 112
Msa0546520 AT5G20260.1 27.723 303 183 10 157 449 48 324 2.75e-25 106
Msa0546520 AT5G20260.3 27.723 303 183 10 157 449 75 351 4.35e-25 106
Msa0546520 AT5G03795.1 27.528 356 205 10 110 449 188 506 6.52e-25 107
Msa0546520 AT5G20260.2 27.723 303 183 10 157 449 180 456 7.48e-25 107
Msa0546520 AT3G42180.4 25.915 328 197 9 138 449 33 330 3.49e-24 103
Msa0546520 AT3G42180.1 26.524 328 195 10 138 449 162 459 4.37e-24 105
Msa0546520 AT5G37000.1 29.961 257 151 7 157 406 268 502 1.32e-23 104
Msa0546520 AT5G25310.1 25.414 362 231 10 100 449 136 470 1.28e-22 100
Msa0546520 AT5G19670.1 25.485 361 204 12 112 449 281 599 9.58e-22 99.0
Msa0546520 AT5G19670.2 25.485 361 204 12 112 449 281 599 9.58e-22 99.0
Msa0546520 AT4G32790.1 27.606 355 208 14 110 449 265 585 2.75e-21 97.4
Msa0546520 AT4G32790.3 27.606 355 208 14 110 449 265 585 2.75e-21 97.4
Msa0546520 AT4G32790.2 27.606 355 208 14 110 449 265 585 2.75e-21 97.4
Msa0546520 AT3G07620.1 25.852 352 217 11 110 449 130 449 1.02e-20 95.1
Msa0546520 AT5G25820.1 27.066 351 217 15 110 449 322 644 1.26e-20 95.5
Msa0546520 AT5G16890.1 25.641 351 192 15 112 421 118 440 4.61e-20 93.2
Msa0546520 AT5G11610.1 28.344 314 172 12 110 406 218 495 1.33e-19 92.0
Msa0546520 AT5G44930.2 26.966 267 158 9 153 409 125 364 1.35e-15 79.3
Msa0546520 AT5G44930.1 26.966 267 158 9 153 409 125 364 1.35e-15 79.3
Msa0546520 AT5G44930.3 26.966 267 158 9 153 409 125 364 1.40e-15 78.6
Msa0546520 AT3G45400.1 27.953 254 157 9 154 401 154 387 1.85e-14 75.9
Msa0546520 AT2G35100.1 26.148 283 170 10 153 421 126 383 4.16e-14 74.7
Msa0546520 AT3G03650.1 23.544 395 233 14 58 406 60 431 2.18e-13 72.8
Msa0546520 AT1G74680.1 25.532 329 172 13 112 394 75 376 2.27e-13 72.4
Msa0546520 AT1G34270.1 24.495 396 232 12 45 399 20 389 1.86e-12 69.7

Find 133 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCAAACTTTGTTGTATTT+TGG 0.142584 4_1:-38287676 None:intergenic
ATTTGTAATATTTATGAAAA+TGG 0.174296 4_1:-38287420 None:intergenic
AATATTACAAATGGATTCTT+TGG 0.193458 4_1:+38287431 Msa0546520:CDS
TGTAACTTCAGCACCGTTAA+TGG 0.202940 4_1:+38287829 Msa0546520:CDS
TGAACGGACGGCGAGATATT+TGG 0.204415 4_1:+38288270 Msa0546520:CDS
TCCAAGCATCCATTTATTAA+AGG 0.216117 4_1:+38289712 Msa0546520:three_prime_UTR
ATTGAATTCTTCATAATTTC+AGG 0.233449 4_1:-38288131 None:intergenic
AATCTTCCACTAACGTTCTT+AGG 0.242624 4_1:-38288323 None:intergenic
ATTACGTGTCAAATTGTAAT+TGG 0.266113 4_1:-38289227 None:intergenic
CACCAAAATACAACAAAGTT+TGG 0.270063 4_1:+38287674 Msa0546520:CDS
AAAAGGTGGATAGGTCTTAT+AGG 0.332673 4_1:+38289187 Msa0546520:CDS
GAGTACTTCGAGTATATTAA+TGG 0.338603 4_1:+38289433 Msa0546520:three_prime_UTR
CTAGTTGAATCCGTTGCATT+AGG 0.341394 4_1:+38288913 Msa0546520:CDS
GAACGGACGGCGAGATATTT+GGG 0.347966 4_1:+38288271 Msa0546520:CDS
CTACGGAGACATAGGTTTGC+CGG 0.360281 4_1:+38288820 Msa0546520:CDS
CCTGTGCTACGGTTCCAAAA+AGG 0.364194 4_1:-38287919 None:intergenic
ATTACAATTTGACACGTAAT+GGG 0.364936 4_1:+38289230 Msa0546520:exon
GGAAAGTGAGAACAGTGATA+TGG 0.375416 4_1:+38288767 Msa0546520:intron
ATCGTACTCCGTACACTTTC+CGG 0.376663 4_1:-38288233 None:intergenic
AATTACAATTTGACACGTAA+TGG 0.378306 4_1:+38289229 Msa0546520:CDS
TGCAATTTCTGACTGGTAAC+CGG 0.384819 4_1:-38288839 None:intergenic
TTCGTAGCTTCCCATGATTT+CGG 0.388368 4_1:+38287955 Msa0546520:CDS
GTCCTTTGGGGTGGGCCCCA+TGG 0.390095 4_1:+38288881 Msa0546520:CDS
TCAATTGTGTTACAAACGTT+TGG 0.390232 4_1:+38288149 Msa0546520:CDS
ATGTCCGTGCGGTTTGGAAA+AGG 0.390251 4_1:+38289478 Msa0546520:three_prime_UTR
GATTCGATGTCCGTGCGGTT+TGG 0.391003 4_1:+38289472 Msa0546520:three_prime_UTR
GCCACGTGGCATCTCCTTCA+TGG 0.397742 4_1:-38289143 None:intergenic
TAATCATAGCGGACGGTATC+CGG 0.403149 4_1:+38288947 Msa0546520:CDS
GGATGCTTGGATATAGAAAC+TGG 0.405627 4_1:-38289700 None:intergenic
GTTAATGGCTTCCCTGCAAT+TGG 0.413581 4_1:+38287844 Msa0546520:CDS
TGACAGGAAAGAAAGAATTA+AGG 0.415747 4_1:-38287165 None:intergenic
ACCTTTAATAAATGGATGCT+TGG 0.416628 4_1:-38289713 None:intergenic
TTGTGGGTGATGACATTAAT+GGG 0.420910 4_1:+38289402 Msa0546520:three_prime_UTR
CGGCGGAGGAAAACGGTAAC+CGG 0.425078 4_1:-38288966 None:intergenic
GAGCGTGCATGACCAATTGC+AGG 0.432956 4_1:-38287856 None:intergenic
AATTGTTAGTGGTTTACAGC+TGG 0.436621 4_1:+38289373 Msa0546520:three_prime_UTR
AAAATTAGGAAAATTGTTAG+TGG 0.439671 4_1:+38289362 Msa0546520:three_prime_UTR
GAAAACAAGAACCGAAATCA+TGG 0.441468 4_1:-38287966 None:intergenic
CCAGTCAGAAATTGCACGTT+CGG 0.444334 4_1:+38288846 Msa0546520:CDS
CCTACATTCTTTGAGTGAAA+AGG 0.453638 4_1:+38289170 Msa0546520:CDS
ACACGTAATGGGTATGCATT+GGG 0.454670 4_1:+38289241 Msa0546520:exon
CAACTAGTCTAGGGCTCCAT+GGG 0.458394 4_1:-38288897 None:intergenic
CACACATTGTGTTTCTTGCA+TGG 0.461851 4_1:+38289325 Msa0546520:three_prime_UTR
GCAACGGATTCAACTAGTCT+AGG 0.463244 4_1:-38288907 None:intergenic
CATTATTCAAAGGAATTTGT+GGG 0.469520 4_1:+38289080 Msa0546520:CDS
GACACGTAATGGGTATGCAT+TGG 0.472969 4_1:+38289240 Msa0546520:exon
GCATTATTCAAAGGAATTTG+TGG 0.473236 4_1:+38289079 Msa0546520:CDS
ATACCGTCCGCTATGATTAC+CGG 0.473599 4_1:-38288943 None:intergenic
AAGTTACAAGAAACGTAAAC+TGG 0.479184 4_1:-38287814 None:intergenic
GGAGAAAGATGTTTGGAGGC+TGG 0.479889 4_1:+38289020 Msa0546520:CDS
TTTGTGGGTGATGACATTAA+TGG 0.483377 4_1:+38289401 Msa0546520:three_prime_UTR
CGGTGGCGGAGAAAGATGTT+TGG 0.483620 4_1:+38289013 Msa0546520:CDS
TTGTTTATGTCCTTTGGGGT+GGG 0.483838 4_1:+38288873 Msa0546520:CDS
ATATCTCGCCGTCCGTTCAC+CGG 0.484215 4_1:-38288266 None:intergenic
TCAACTAGTCTAGGGCTCCA+TGG 0.487427 4_1:-38288898 None:intergenic
TGAAGGAGATGCCACGTGGC+AGG 0.487992 4_1:+38289146 Msa0546520:CDS
TTATGTTATTGTTGTTGTTG+TGG 0.489317 4_1:-38287513 None:intergenic
TGAAATCTCCGGCCAGTTCA+CGG 0.495124 4_1:-38288986 None:intergenic
GAGGACGTGGCAATGAAAGA+TGG 0.495923 4_1:+38288104 Msa0546520:CDS
ATAGGTCTTATAGGAGTTCA+AGG 0.496139 4_1:+38289196 Msa0546520:CDS
TTGTTTCGCCGGAAAGTGTA+CGG 0.497782 4_1:+38288225 Msa0546520:CDS
CAGTTCACGGCGGAGGAAAA+CGG 0.502991 4_1:-38288973 None:intergenic
GAGAAAGATGTTTGGAGGCT+GGG 0.503317 4_1:+38289021 Msa0546520:CDS
GATACCACCGTTTGTTTCGC+CGG 0.503663 4_1:+38288214 Msa0546520:CDS
AATTCCTTTGAATAATGCTA+AGG 0.505493 4_1:-38289074 None:intergenic
TTCCTCCGCCGTGAACTGGC+CGG 0.509651 4_1:+38288978 Msa0546520:CDS
CTCCGGCCAGTTCACGGCGG+AGG 0.510218 4_1:-38288980 None:intergenic
GTTCATCCTAAGAACGTTAG+TGG 0.510459 4_1:+38288317 Msa0546520:CDS
AATTGCAGGGAAGCCATTAA+CGG 0.516370 4_1:-38287842 None:intergenic
ACACTTTCCGGCGAAACAAA+CGG 0.517832 4_1:-38288221 None:intergenic
AGGACGTGGCAATGAAAGAT+GGG 0.525036 4_1:+38288105 Msa0546520:CDS
GGTGAAGGGAAAGAGATTGA+AGG 0.525888 4_1:-38287263 None:intergenic
CTCCATGGGGCCCACCCCAA+AGG 0.530643 4_1:-38288883 None:intergenic
ATACAAAATCTACCATCCAT+TGG 0.531421 4_1:-38289562 None:intergenic
GAAAGAATTAAGGAAAGGAA+AGG 0.538869 4_1:-38287155 None:intergenic
TTTGTTTATGTCCTTTGGGG+TGG 0.541387 4_1:+38288872 Msa0546520:CDS
GGAAAGAAAGAATTAAGGAA+AGG 0.545875 4_1:-38287160 None:intergenic
CAAACCTTAGCATTATTCAA+AGG 0.554490 4_1:+38289070 Msa0546520:CDS
CCGTGGCATTTGAATAGTGA+AGG 0.554969 4_1:+38289284 Msa0546520:three_prime_UTR
TTCAATAGTAGGGTCCATGA+AGG 0.556540 4_1:+38289129 Msa0546520:CDS
CTTTGAGTGAAAAGGTGGAT+AGG 0.557127 4_1:+38289178 Msa0546520:CDS
ATTTGTGGGACCCACGTACA+AGG 0.557205 4_1:+38289094 Msa0546520:CDS
CGTTGCATTAGGTTGTGTGC+CGG 0.564884 4_1:+38288924 Msa0546520:CDS
TAATCATCATGCAAATCCAA+TGG 0.565272 4_1:+38289546 Msa0546520:three_prime_UTR
GGGAAAGAGATTGAAGGTGA+AGG 0.568353 4_1:-38287257 None:intergenic
TGGCGGAGAAAGATGTTTGG+AGG 0.571787 4_1:+38289016 Msa0546520:CDS
CAACGGATTCAACTAGTCTA+GGG 0.572251 4_1:-38288906 None:intergenic
ACATTCTTTGAGTGAAAAGG+TGG 0.573238 4_1:+38289173 Msa0546520:CDS
GTCTCCGTAGGTAAAACCTC+CGG 0.581628 4_1:-38288807 None:intergenic
AAAACAAGAACCGAAATCAT+GGG 0.585303 4_1:-38287965 None:intergenic
AATTAAGGAAAGGAAAGGAA+AGG 0.586004 4_1:-38287150 None:intergenic
CATGGGAAGCTACGAAGACA+TGG 0.588112 4_1:-38287948 None:intergenic
CGAGTATATTAATGGTGACA+TGG 0.589352 4_1:+38289441 Msa0546520:three_prime_UTR
CATCATGCAAATCCAATGGA+TGG 0.590339 4_1:+38289550 Msa0546520:three_prime_UTR
TAGGTCTTATAGGAGTTCAA+GGG 0.590547 4_1:+38289197 Msa0546520:CDS
ACTAGTACTATGAATATACA+TGG 0.593295 4_1:+38289610 Msa0546520:three_prime_UTR
GCTAAGCAAGAAACAGTGAC+AGG 0.595419 4_1:-38287181 None:intergenic
CCGAACGTGCAATTTCTGAC+TGG 0.596924 4_1:-38288846 None:intergenic
GGAGATTTCAGTCACGGTGG+CGG 0.597754 4_1:+38288999 Msa0546520:CDS
TTTCTTTCGTGGGAAAATGG+AGG 0.599457 4_1:+38288295 Msa0546520:CDS
TGAAGGTGAAGGATGTTGAG+AGG 0.601036 4_1:-38287246 None:intergenic
CGGCACACAACCTAATGCAA+CGG 0.603395 4_1:-38288923 None:intergenic
GTAGTGCTTTCCTTGTACGT+GGG 0.605083 4_1:-38289104 None:intergenic
TACTATGAATATACATGGAG+AGG 0.606973 4_1:+38289615 Msa0546520:three_prime_UTR
AGGATGTTGAGAGGTTGAGA+AGG 0.611251 4_1:-38287237 None:intergenic
AGTAGTGCTTTCCTTGTACG+TGG 0.619416 4_1:-38289105 None:intergenic
GCCACCGTGACTGAAATCTC+CGG 0.620485 4_1:-38288997 None:intergenic
ACATGTTCAACTTTCTGACA+AGG 0.622795 4_1:-38288188 None:intergenic
AAAGTACTTACATATAAGGA+CGG 0.626481 4_1:+38289738 Msa0546520:three_prime_UTR
TGGTCTGGTGTGGAGAGAAG+TGG 0.629279 4_1:-38287206 None:intergenic
CGGCAAACCTATGTCTCCGT+AGG 0.630204 4_1:-38288819 None:intergenic
ATATACTCGAAGTACTCATG+TGG 0.630314 4_1:-38289427 None:intergenic
AGCGTGCATGACCAATTGCA+GGG 0.630768 4_1:-38287855 None:intergenic
CATGGTCGGATCCTGTGCTA+CGG 0.633138 4_1:-38287930 None:intergenic
CTGGCCGGAGATTTCAGTCA+CGG 0.634104 4_1:+38288993 Msa0546520:CDS
ATGAAACTCATGCATAAACA+TGG 0.655722 4_1:+38287370 Msa0546520:CDS
CCTTCACTATTCAAATGCCA+CGG 0.657520 4_1:-38289284 None:intergenic
AAAATTTCAACAATGACCGG+AGG 0.658957 4_1:+38288791 Msa0546520:CDS
TATACTCGAAGTACTCATGT+GGG 0.662910 4_1:-38289426 None:intergenic
GGAAGCTACGAAGACATGGT+CGG 0.668244 4_1:-38287944 None:intergenic
CAATTTGATTCTTCACACCG+TGG 0.675001 4_1:+38289267 Msa0546520:three_prime_UTR
GGAAAGTGTACGGAGTACGA+TGG 0.690619 4_1:+38288235 Msa0546520:CDS
GGACGTGGCAATGAAAGATG+GGG 0.696171 4_1:+38288106 Msa0546520:CDS
GTGCCGGTAATCATAGCGGA+CGG 0.703809 4_1:+38288940 Msa0546520:CDS
GTACTTACATATAAGGACGG+AGG 0.712896 4_1:+38289741 Msa0546520:three_prime_UTR
AGAATGTAGGACCTGCCACG+TGG 0.729796 4_1:-38289157 None:intergenic
TCCATGAAGGAGATGCCACG+TGG 0.733964 4_1:+38289142 Msa0546520:CDS
GCCGGAGATTTCAGTCACGG+TGG 0.735933 4_1:+38288996 Msa0546520:CDS
AACTAGTCTAGGGCTCCATG+GGG 0.744946 4_1:-38288896 None:intergenic
TTGTGTGCCGGTAATCATAG+CGG 0.757421 4_1:+38288936 Msa0546520:CDS
GCATTGATTCGATGTCCGTG+CGG 0.770706 4_1:+38289467 Msa0546520:three_prime_UTR
AATCTCCGGCCAGTTCACGG+CGG 0.780614 4_1:-38288983 None:intergenic
CTTTCCGGCGAAACAAACGG+TGG 0.795710 4_1:-38288218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCAATAAATGAAA+TGG + chr4_1:38287297-38287316 Msa0546520:exon 10.0%
!! ATTTGTAATATTTATGAAAA+TGG - chr4_1:38287423-38287442 None:intergenic 10.0%
!!! ATTTTCATAAATATTACAAA+TGG + chr4_1:38287422-38287441 Msa0546520:CDS 10.0%
!!! TTTTTTTTTTATTTTTACCA+GGG - chr4_1:38287995-38288014 None:intergenic 10.0%
!!! TTTTTTTTTTGTTTTGTTTT+TGG + chr4_1:38288072-38288091 Msa0546520:intron 10.0%
!!! TTTTTTTTTGTTTTGTTTTT+GGG + chr4_1:38288073-38288092 Msa0546520:intron 10.0%
!! TGAAAAAAAAAACTATAAGA+AGG - chr4_1:38287287-38287306 None:intergenic 15.0%
!!! GTTTTTTTTTTATTTTTACC+AGG - chr4_1:38287996-38288015 None:intergenic 15.0%
!!! AATTAAGATTTTAATTAGAG+AGG - chr4_1:38288380-38288399 None:intergenic 15.0%
!!! TTTGTTGGTAAAAAAAAAAA+AGG + chr4_1:38288492-38288511 Msa0546520:intron 15.0%
!! ATATGAGACAAAATTAATAT+AGG + chr4_1:38288533-38288552 Msa0546520:intron 15.0%
!! TAATATGAAAATTAGTTCAT+TGG - chr4_1:38288581-38288600 None:intergenic 15.0%
!! AGAAGAATAAATGAAAAATT+AGG + chr4_1:38289348-38289367 Msa0546520:three_prime_UTR 15.0%
!!! TACTTTTTACCTTTAATAAA+TGG - chr4_1:38289724-38289743 None:intergenic 15.0%
!!! AATATTACAAATGGATTCTT+TGG + chr4_1:38287431-38287450 Msa0546520:CDS 20.0%
!!! AGAAAGAGATTTTATGATAT+GGG - chr4_1:38287563-38287582 None:intergenic 20.0%
!!! ATAAATGATTTTTGCATCTT+GGG - chr4_1:38287708-38287727 None:intergenic 20.0%
!!! AATAAATGATTTTTGCATCT+TGG - chr4_1:38287709-38287728 None:intergenic 20.0%
!! ATTGAATTCTTCATAATTTC+AGG - chr4_1:38288134-38288153 None:intergenic 20.0%
!! CAACAAAAAGTAATATTTGT+TGG + chr4_1:38288477-38288496 Msa0546520:intron 20.0%
!!! ATGTGATTATTGAGTTTTTT+TGG + chr4_1:38288695-38288714 Msa0546520:intron 20.0%
!! AAAATTAGGAAAATTGTTAG+TGG + chr4_1:38289362-38289381 Msa0546520:three_prime_UTR 20.0%
!!! TATGCTTTTGTGTTATATTT+TGG + chr4_1:38289658-38289677 Msa0546520:three_prime_UTR 20.0%
!!! GTAAAAAGTACTTACATATA+AGG + chr4_1:38289734-38289753 Msa0546520:three_prime_UTR 20.0%
! AAAAACTATAAGAAGGTGAA+GGG - chr4_1:38287280-38287299 None:intergenic 25.0%
! AAAAAACTATAAGAAGGTGA+AGG - chr4_1:38287281-38287300 None:intergenic 25.0%
! AAAAAACCCTCAAAAAACAA+AGG + chr4_1:38287334-38287353 Msa0546520:CDS 25.0%
!!! TAGTATCCTTTGTTTTTTGA+GGG - chr4_1:38287343-38287362 None:intergenic 25.0%
!!! ATAGTATCCTTTGTTTTTTG+AGG - chr4_1:38287344-38287363 None:intergenic 25.0%
!! TTATGTTATTGTTGTTGTTG+TGG - chr4_1:38287516-38287535 None:intergenic 25.0%
!! GAGAAAGAGATTTTATGATA+TGG - chr4_1:38287564-38287583 None:intergenic 25.0%
!!! TGTTGTTTTTTTGATGGATA+AGG - chr4_1:38287590-38287609 None:intergenic 25.0%
!!! TGATGATGTTGTTTTTTTGA+TGG - chr4_1:38287596-38287615 None:intergenic 25.0%
!!! CTAGTTTTTTGAAGTTTTTG+AGG - chr4_1:38287619-38287638 None:intergenic 25.0%
! AGAAAAAATCAGCTTCATAT+GGG - chr4_1:38287789-38287808 None:intergenic 25.0%
! AAGAAAAAATCAGCTTCATA+TGG - chr4_1:38287790-38287809 None:intergenic 25.0%
!! AATTTATGTTTTGCCTTTGA+AGG + chr4_1:38288746-38288765 Msa0546520:intron 25.0%
! AATTCCTTTGAATAATGCTA+AGG - chr4_1:38289077-38289096 None:intergenic 25.0%
! CATTATTCAAAGGAATTTGT+GGG + chr4_1:38289080-38289099 Msa0546520:CDS 25.0%
! ATTACGTGTCAAATTGTAAT+TGG - chr4_1:38289230-38289249 None:intergenic 25.0%
! AATTACAATTTGACACGTAA+TGG + chr4_1:38289229-38289248 Msa0546520:CDS 25.0%
! ATTACAATTTGACACGTAAT+GGG + chr4_1:38289230-38289249 Msa0546520:exon 25.0%
! ACTAGTACTATGAATATACA+TGG + chr4_1:38289610-38289629 Msa0546520:three_prime_UTR 25.0%
!! AAAGTACTTACATATAAGGA+CGG + chr4_1:38289738-38289757 Msa0546520:three_prime_UTR 25.0%
AATTAAGGAAAGGAAAGGAA+AGG - chr4_1:38287153-38287172 None:intergenic 30.0%
GAAAGAATTAAGGAAAGGAA+AGG - chr4_1:38287158-38287177 None:intergenic 30.0%
GGAAAGAAAGAATTAAGGAA+AGG - chr4_1:38287163-38287182 None:intergenic 30.0%
TGACAGGAAAGAAAGAATTA+AGG - chr4_1:38287168-38287187 None:intergenic 30.0%
ATGAAACTCATGCATAAACA+TGG + chr4_1:38287370-38287389 Msa0546520:CDS 30.0%
!!! TGGTTTTTTTCTTGTTGTTG+AGG - chr4_1:38287403-38287422 None:intergenic 30.0%
!! CAAACTTTGTTGTATTTTGG+TGG - chr4_1:38287676-38287695 None:intergenic 30.0%
CACCAAAATACAACAAAGTT+TGG + chr4_1:38287674-38287693 Msa0546520:CDS 30.0%
!! AGCCAAACTTTGTTGTATTT+TGG - chr4_1:38287679-38287698 None:intergenic 30.0%
AAGTTACAAGAAACGTAAAC+TGG - chr4_1:38287817-38287836 None:intergenic 30.0%
AAAACAAGAACCGAAATCAT+GGG - chr4_1:38287968-38287987 None:intergenic 30.0%
!!! GTTTTGTTTTTGGGTTTTGA+AGG + chr4_1:38288082-38288101 Msa0546520:intron 30.0%
TCAATTGTGTTACAAACGTT+TGG + chr4_1:38288149-38288168 Msa0546520:CDS 30.0%
!! ATATTTGGGTTTTCTTTCGT+GGG + chr4_1:38288285-38288304 Msa0546520:CDS 30.0%
! TTTGTTGTGAGAGACAAATT+GGG - chr4_1:38288464-38288483 None:intergenic 30.0%
!! TTTTGTTGTGAGAGACAAAT+TGG - chr4_1:38288465-38288484 None:intergenic 30.0%
! GGCTAGTTGACAAAAAAAAT+TGG - chr4_1:38288560-38288579 None:intergenic 30.0%
GGAAAAATTTCAACAATGAC+CGG + chr4_1:38288788-38288807 Msa0546520:CDS 30.0%
!!! GTGTTTTGTTTATGTCCTTT+GGG + chr4_1:38288868-38288887 Msa0546520:CDS 30.0%
!!! TGTTTTGTTTATGTCCTTTG+GGG + chr4_1:38288869-38288888 Msa0546520:CDS 30.0%
CAAACCTTAGCATTATTCAA+AGG + chr4_1:38289070-38289089 Msa0546520:CDS 30.0%
GCATTATTCAAAGGAATTTG+TGG + chr4_1:38289079-38289098 Msa0546520:CDS 30.0%
!! AAGCACTACTTTTCAATAGT+AGG + chr4_1:38289118-38289137 Msa0546520:CDS 30.0%
!! AGCACTACTTTTCAATAGTA+GGG + chr4_1:38289119-38289138 Msa0546520:CDS 30.0%
! TTTACAGCTGGAAATTTTTG+TGG + chr4_1:38289385-38289404 Msa0546520:three_prime_UTR 30.0%
! TTACAGCTGGAAATTTTTGT+GGG + chr4_1:38289386-38289405 Msa0546520:three_prime_UTR 30.0%
GAGTACTTCGAGTATATTAA+TGG + chr4_1:38289433-38289452 Msa0546520:three_prime_UTR 30.0%
TAATCATCATGCAAATCCAA+TGG + chr4_1:38289546-38289565 Msa0546520:three_prime_UTR 30.0%
ATACAAAATCTACCATCCAT+TGG - chr4_1:38289565-38289584 None:intergenic 30.0%
TACTATGAATATACATGGAG+AGG + chr4_1:38289615-38289634 Msa0546520:three_prime_UTR 30.0%
TCCAAGCATCCATTTATTAA+AGG + chr4_1:38289712-38289731 Msa0546520:three_prime_UTR 30.0%
ACCTTTAATAAATGGATGCT+TGG - chr4_1:38289716-38289735 None:intergenic 30.0%
GAAAACAAGAACCGAAATCA+TGG - chr4_1:38287969-38287988 None:intergenic 35.0%
!!! TTGTTTTTGGGTTTTGAAGG+AGG + chr4_1:38288085-38288104 Msa0546520:intron 35.0%
ACATGTTCAACTTTCTGACA+AGG - chr4_1:38288191-38288210 None:intergenic 35.0%
!! GATATTTGGGTTTTCTTTCG+TGG + chr4_1:38288284-38288303 Msa0546520:CDS 35.0%
AATCTTCCACTAACGTTCTT+AGG - chr4_1:38288326-38288345 None:intergenic 35.0%
CCATAGCCAAATTAGTTCAT+GGG - chr4_1:38288640-38288659 None:intergenic 35.0%
ACCATAGCCAAATTAGTTCA+TGG - chr4_1:38288641-38288660 None:intergenic 35.0%
AAAATTTCAACAATGACCGG+AGG + chr4_1:38288791-38288810 Msa0546520:CDS 35.0%
!!! GGTGTTTTGTTTATGTCCTT+TGG + chr4_1:38288867-38288886 Msa0546520:CDS 35.0%
GGGTGAGATATTAGAAAAAG+TGG + chr4_1:38289041-38289060 Msa0546520:CDS 35.0%
! CCTTTTCACTCAAAGAATGT+AGG - chr4_1:38289173-38289192 None:intergenic 35.0%
CCTACATTCTTTGAGTGAAA+AGG + chr4_1:38289170-38289189 Msa0546520:CDS 35.0%
ACATTCTTTGAGTGAAAAGG+TGG + chr4_1:38289173-38289192 Msa0546520:CDS 35.0%
! AAAAGGTGGATAGGTCTTAT+AGG + chr4_1:38289187-38289206 Msa0546520:CDS 35.0%
! ATAGGTCTTATAGGAGTTCA+AGG + chr4_1:38289196-38289215 Msa0546520:CDS 35.0%
! TAGGTCTTATAGGAGTTCAA+GGG + chr4_1:38289197-38289216 Msa0546520:CDS 35.0%
AATTGTTAGTGGTTTACAGC+TGG + chr4_1:38289373-38289392 Msa0546520:three_prime_UTR 35.0%
TTTGTGGGTGATGACATTAA+TGG + chr4_1:38289401-38289420 Msa0546520:three_prime_UTR 35.0%
TTGTGGGTGATGACATTAAT+GGG + chr4_1:38289402-38289421 Msa0546520:three_prime_UTR 35.0%
! TATACTCGAAGTACTCATGT+GGG - chr4_1:38289429-38289448 None:intergenic 35.0%
! ATATACTCGAAGTACTCATG+TGG - chr4_1:38289430-38289449 None:intergenic 35.0%
CGAGTATATTAATGGTGACA+TGG + chr4_1:38289441-38289460 Msa0546520:three_prime_UTR 35.0%
!! AGGAAAGGTGTGAGTTTTGT+TGG - chr4_1:38287138-38287157 None:intergenic 40.0%
!!! AGGTTGAGAAGGTGTTTTCT+TGG - chr4_1:38287229-38287248 None:intergenic 40.0%
TGTAACTTCAGCACCGTTAA+TGG + chr4_1:38287829-38287848 Msa0546520:CDS 40.0%
AATTGCAGGGAAGCCATTAA+CGG - chr4_1:38287845-38287864 None:intergenic 40.0%
TTCGTAGCTTCCCATGATTT+CGG + chr4_1:38287955-38287974 Msa0546520:CDS 40.0%
! GAGTACGATGGAGAATTTTC+CGG + chr4_1:38288247-38288266 Msa0546520:CDS 40.0%
! ATGGAGAATTTTCCGGTGAA+CGG + chr4_1:38288254-38288273 Msa0546520:CDS 40.0%
! GGTTTTCTTTCGTGGGAAAA+TGG + chr4_1:38288292-38288311 Msa0546520:CDS 40.0%
TTTCTTTCGTGGGAAAATGG+AGG + chr4_1:38288295-38288314 Msa0546520:CDS 40.0%
GTTCATCCTAAGAACGTTAG+TGG + chr4_1:38288317-38288336 Msa0546520:CDS 40.0%
! GTGAGAGACAAATTGGGTTT+TGG - chr4_1:38288458-38288477 None:intergenic 40.0%
CACTGACCCATGAACTAATT+TGG + chr4_1:38288631-38288650 Msa0546520:intron 40.0%
CCCATGAACTAATTTGGCTA+TGG + chr4_1:38288637-38288656 Msa0546520:intron 40.0%
CTGTTCTCACTTTCCTTCAA+AGG - chr4_1:38288762-38288781 None:intergenic 40.0%
GGAAAGTGAGAACAGTGATA+TGG + chr4_1:38288767-38288786 Msa0546520:intron 40.0%
TGCAATTTCTGACTGGTAAC+CGG - chr4_1:38288842-38288861 None:intergenic 40.0%
! TTTGTTTATGTCCTTTGGGG+TGG + chr4_1:38288872-38288891 Msa0546520:CDS 40.0%
!! TTGTTTATGTCCTTTGGGGT+GGG + chr4_1:38288873-38288892 Msa0546520:CDS 40.0%
! CAACGGATTCAACTAGTCTA+GGG - chr4_1:38288909-38288928 None:intergenic 40.0%
CTAGTTGAATCCGTTGCATT+AGG + chr4_1:38288913-38288932 Msa0546520:CDS 40.0%
TTCAATAGTAGGGTCCATGA+AGG + chr4_1:38289129-38289148 Msa0546520:CDS 40.0%
CTTTGAGTGAAAAGGTGGAT+AGG + chr4_1:38289178-38289197 Msa0546520:CDS 40.0%
!! ACACGTAATGGGTATGCATT+GGG + chr4_1:38289241-38289260 Msa0546520:exon 40.0%
CAATTTGATTCTTCACACCG+TGG + chr4_1:38289267-38289286 Msa0546520:three_prime_UTR 40.0%
CCTTCACTATTCAAATGCCA+CGG - chr4_1:38289287-38289306 None:intergenic 40.0%
CACACATTGTGTTTCTTGCA+TGG + chr4_1:38289325-38289344 Msa0546520:three_prime_UTR 40.0%
! TTTTCCTTTTCCAAACCGCA+CGG - chr4_1:38289485-38289504 None:intergenic 40.0%
CATCATGCAAATCCAATGGA+TGG + chr4_1:38289550-38289569 Msa0546520:three_prime_UTR 40.0%
GGATGCTTGGATATAGAAAC+TGG - chr4_1:38289703-38289722 None:intergenic 40.0%
GTACTTACATATAAGGACGG+AGG + chr4_1:38289741-38289760 Msa0546520:three_prime_UTR 40.0%
GCTAAGCAAGAAACAGTGAC+AGG - chr4_1:38287184-38287203 None:intergenic 45.0%
!!! GAGAAGGTGTTTTCTTGGTC+TGG - chr4_1:38287224-38287243 None:intergenic 45.0%
AGGATGTTGAGAGGTTGAGA+AGG - chr4_1:38287240-38287259 None:intergenic 45.0%
TGAAGGTGAAGGATGTTGAG+AGG - chr4_1:38287249-38287268 None:intergenic 45.0%
GGGAAAGAGATTGAAGGTGA+AGG - chr4_1:38287260-38287279 None:intergenic 45.0%
GGTGAAGGGAAAGAGATTGA+AGG - chr4_1:38287266-38287285 None:intergenic 45.0%
GTTAATGGCTTCCCTGCAAT+TGG + chr4_1:38287844-38287863 Msa0546520:CDS 45.0%
!! ACGGTTCCAAAAAGGGTACT+CGG - chr4_1:38287914-38287933 None:intergenic 45.0%
CTGTGCTACGGTTCCAAAAA+GGG - chr4_1:38287921-38287940 None:intergenic 45.0%
AGGACGTGGCAATGAAAGAT+GGG + chr4_1:38288105-38288124 Msa0546520:CDS 45.0%
ACACTTTCCGGCGAAACAAA+CGG - chr4_1:38288224-38288243 None:intergenic 45.0%
! TTGTTTCGCCGGAAAGTGTA+CGG + chr4_1:38288225-38288244 Msa0546520:CDS 45.0%
ATCGTACTCCGTACACTTTC+CGG - chr4_1:38288236-38288255 None:intergenic 45.0%
! AGAATTTTCCGGTGAACGGA+CGG + chr4_1:38288258-38288277 Msa0546520:CDS 45.0%
! ATGACCGGAGGTTTTACCTA+CGG + chr4_1:38288803-38288822 Msa0546520:CDS 45.0%
! GGTTTTACCTACGGAGACAT+AGG + chr4_1:38288812-38288831 Msa0546520:CDS 45.0%
CCAGTCAGAAATTGCACGTT+CGG + chr4_1:38288846-38288865 Msa0546520:CDS 45.0%
! GCAACGGATTCAACTAGTCT+AGG - chr4_1:38288910-38288929 None:intergenic 45.0%
! TTGTGTGCCGGTAATCATAG+CGG + chr4_1:38288936-38288955 Msa0546520:CDS 45.0%
ATACCGTCCGCTATGATTAC+CGG - chr4_1:38288946-38288965 None:intergenic 45.0%
!! TAATCATAGCGGACGGTATC+CGG + chr4_1:38288947-38288966 Msa0546520:CDS 45.0%
GAGAAAGATGTTTGGAGGCT+GGG + chr4_1:38289021-38289040 Msa0546520:CDS 45.0%
GTAGTGCTTTCCTTGTACGT+GGG - chr4_1:38289107-38289126 None:intergenic 45.0%
AGTAGTGCTTTCCTTGTACG+TGG - chr4_1:38289108-38289127 None:intergenic 45.0%
!! GACACGTAATGGGTATGCAT+TGG + chr4_1:38289240-38289259 Msa0546520:exon 45.0%
CCGTGGCATTTGAATAGTGA+AGG + chr4_1:38289284-38289303 Msa0546520:three_prime_UTR 45.0%
!!! TCTTAATTTTTTATTTTTTT+TGG + chr4_1:38288392-38288411 Msa0546520:intron 5.0%
! GGTGTTTTCTTGGTCTGGTG+TGG - chr4_1:38287219-38287238 None:intergenic 50.0%
AGCGTGCATGACCAATTGCA+GGG - chr4_1:38287858-38287877 None:intergenic 50.0%
! TCTCCACCGAGTACCCTTTT+TGG + chr4_1:38287905-38287924 Msa0546520:CDS 50.0%
!! GTTCCAAAAAGGGTACTCGG+TGG - chr4_1:38287911-38287930 None:intergenic 50.0%
CCTGTGCTACGGTTCCAAAA+AGG - chr4_1:38287922-38287941 None:intergenic 50.0%
!!! CCTTTTTGGAACCGTAGCAC+AGG + chr4_1:38287919-38287938 Msa0546520:CDS 50.0%
GGAAGCTACGAAGACATGGT+CGG - chr4_1:38287947-38287966 None:intergenic 50.0%
CATGGGAAGCTACGAAGACA+TGG - chr4_1:38287951-38287970 None:intergenic 50.0%
!!! CGGTTCTTGTTTTCACACCC+TGG + chr4_1:38287975-38287994 Msa0546520:CDS 50.0%
!!! TTGGGTTTTGAAGGAGGACG+TGG + chr4_1:38288091-38288110 Msa0546520:intron 50.0%
GAGGACGTGGCAATGAAAGA+TGG + chr4_1:38288104-38288123 Msa0546520:CDS 50.0%
GGACGTGGCAATGAAAGATG+GGG + chr4_1:38288106-38288125 Msa0546520:CDS 50.0%
GATACCACCGTTTGTTTCGC+CGG + chr4_1:38288214-38288233 Msa0546520:CDS 50.0%
! GGAAAGTGTACGGAGTACGA+TGG + chr4_1:38288235-38288254 Msa0546520:CDS 50.0%
TGAACGGACGGCGAGATATT+TGG + chr4_1:38288270-38288289 Msa0546520:CDS 50.0%
GAACGGACGGCGAGATATTT+GGG + chr4_1:38288271-38288290 Msa0546520:CDS 50.0%
GTCTCCGTAGGTAAAACCTC+CGG - chr4_1:38288810-38288829 None:intergenic 50.0%
CTACGGAGACATAGGTTTGC+CGG + chr4_1:38288820-38288839 Msa0546520:CDS 50.0%
CCGAACGTGCAATTTCTGAC+TGG - chr4_1:38288849-38288868 None:intergenic 50.0%
! AACTAGTCTAGGGCTCCATG+GGG - chr4_1:38288899-38288918 None:intergenic 50.0%
! CAACTAGTCTAGGGCTCCAT+GGG - chr4_1:38288900-38288919 None:intergenic 50.0%
! TCAACTAGTCTAGGGCTCCA+TGG - chr4_1:38288901-38288920 None:intergenic 50.0%
CGGCACACAACCTAATGCAA+CGG - chr4_1:38288926-38288945 None:intergenic 50.0%
! CGTTGCATTAGGTTGTGTGC+CGG + chr4_1:38288924-38288943 Msa0546520:CDS 50.0%
TGAAATCTCCGGCCAGTTCA+CGG - chr4_1:38288989-38289008 None:intergenic 50.0%
TGGCGGAGAAAGATGTTTGG+AGG + chr4_1:38289016-38289035 Msa0546520:CDS 50.0%
GGAGAAAGATGTTTGGAGGC+TGG + chr4_1:38289020-38289039 Msa0546520:CDS 50.0%
ATTTGTGGGACCCACGTACA+AGG + chr4_1:38289094-38289113 Msa0546520:CDS 50.0%
!! GCATTGATTCGATGTCCGTG+CGG + chr4_1:38289467-38289486 Msa0546520:three_prime_UTR 50.0%
! ATGTCCGTGCGGTTTGGAAA+AGG + chr4_1:38289478-38289497 Msa0546520:three_prime_UTR 50.0%
TGGTCTGGTGTGGAGAGAAG+TGG - chr4_1:38287209-38287228 None:intergenic 55.0%
GAGCGTGCATGACCAATTGC+AGG - chr4_1:38287859-38287878 None:intergenic 55.0%
CATGGTCGGATCCTGTGCTA+CGG - chr4_1:38287933-38287952 None:intergenic 55.0%
CTTTCCGGCGAAACAAACGG+TGG - chr4_1:38288221-38288240 None:intergenic 55.0%
ATATCTCGCCGTCCGTTCAC+CGG - chr4_1:38288269-38288288 None:intergenic 55.0%
CGGCAAACCTATGTCTCCGT+AGG - chr4_1:38288822-38288841 None:intergenic 55.0%
! GTGCCGGTAATCATAGCGGA+CGG + chr4_1:38288940-38288959 Msa0546520:CDS 55.0%
CAGTTCACGGCGGAGGAAAA+CGG - chr4_1:38288976-38288995 None:intergenic 55.0%
CTGGCCGGAGATTTCAGTCA+CGG + chr4_1:38288993-38289012 Msa0546520:CDS 55.0%
GCCACCGTGACTGAAATCTC+CGG - chr4_1:38289000-38289019 None:intergenic 55.0%
GGAGATTTCAGTCACGGTGG+CGG + chr4_1:38288999-38289018 Msa0546520:CDS 55.0%
!! CGGTGGCGGAGAAAGATGTT+TGG + chr4_1:38289013-38289032 Msa0546520:CDS 55.0%
TCCATGAAGGAGATGCCACG+TGG + chr4_1:38289142-38289161 Msa0546520:CDS 55.0%
AGAATGTAGGACCTGCCACG+TGG - chr4_1:38289160-38289179 None:intergenic 55.0%
GATTCGATGTCCGTGCGGTT+TGG + chr4_1:38289472-38289491 Msa0546520:three_prime_UTR 55.0%
CGGCGGAGGAAAACGGTAAC+CGG - chr4_1:38288969-38288988 None:intergenic 60.0%
! CGTTTTCCTCCGCCGTGAAC+TGG + chr4_1:38288974-38288993 Msa0546520:CDS 60.0%
AATCTCCGGCCAGTTCACGG+CGG - chr4_1:38288986-38289005 None:intergenic 60.0%
GCCGGAGATTTCAGTCACGG+TGG + chr4_1:38288996-38289015 Msa0546520:CDS 60.0%
GCCACGTGGCATCTCCTTCA+TGG - chr4_1:38289146-38289165 None:intergenic 60.0%
TGAAGGAGATGCCACGTGGC+AGG + chr4_1:38289146-38289165 Msa0546520:CDS 60.0%
TTCCTCCGCCGTGAACTGGC+CGG + chr4_1:38288978-38288997 Msa0546520:CDS 65.0%
!! GTCCTTTGGGGTGGGCCCCA+TGG + chr4_1:38288881-38288900 Msa0546520:CDS 70.0%
CTCCATGGGGCCCACCCCAA+AGG - chr4_1:38288886-38288905 None:intergenic 70.0%
CTCCGGCCAGTTCACGGCGG+AGG - chr4_1:38288983-38289002 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 38287128 38289778 38287128 ID=Msa0546520;Name=Msa0546520
chr4_1 mRNA 38287128 38289778 38287128 ID=Msa0546520-mRNA-1;Parent=Msa0546520;Name=Msa0546520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=188|1|1|1|1|1|3|530|470
chr4_1 exon 38287128 38287996 38287128 ID=Msa0546520-mRNA-1:exon:9750;Parent=Msa0546520-mRNA-1
chr4_1 exon 38288104 38288354 38288104 ID=Msa0546520-mRNA-1:exon:9751;Parent=Msa0546520-mRNA-1
chr4_1 exon 38288768 38289778 38288768 ID=Msa0546520-mRNA-1:exon:9752;Parent=Msa0546520-mRNA-1
chr4_1 five_prime_UTR 38287128 38287315 38287128 ID=Msa0546520-mRNA-1:five_prime_utr;Parent=Msa0546520-mRNA-1
chr4_1 CDS 38287316 38287996 38287316 ID=Msa0546520-mRNA-1:cds;Parent=Msa0546520-mRNA-1
chr4_1 CDS 38288104 38288354 38288104 ID=Msa0546520-mRNA-1:cds;Parent=Msa0546520-mRNA-1
chr4_1 CDS 38288768 38289248 38288768 ID=Msa0546520-mRNA-1:cds;Parent=Msa0546520-mRNA-1
chr4_1 three_prime_UTR 38289249 38289778 38289249 ID=Msa0546520-mRNA-1:three_prime_utr;Parent=Msa0546520-mRNA-1
Gene Sequence

>Msa0546520

ATGGATCAAACTCACAAGAAAAAACCCTCAAAAAACAAAGGATACTATGTTAAAATGAAACTCATGCATAAACATGGTATTAGACCTCAACAACAAGAAAAAAACCATTTTCATAAATATTACAAATGGATTCTTTGGCTTTCTCTTTCTCTCTATTTCTTCACTTCTTATCTCATCAGCAACAACAACAATCACAACCACAACAACAACAATAACATAAAACATCATCAAATAACATCAACAACCCATATCATAAAATCTCTTTCTCAATCCTTATCCATCAAAAAAACAACATCATCACCTCAAAAACTTCAAAAAACTAGTTTAAAAAACTTGAAAATATTTGTGTATGATCTTCCACCAAAATACAACAAAGTTTGGCTTAAAAACCCAAGATGCAAAAATCATTTATTTGCTTCAGAAGTTGCTATTCATAGAGCTTTATTAACAAGTGATGTTAGAACTTTTGACCCATATGAAGCTGATTTTTTCTTTGTACCAGTTTACGTTTCTTGTAACTTCAGCACCGTTAATGGCTTCCCTGCAATTGGTCATGCACGCTCATTGATTTCTTCAGCAGTGAAACTCATCTCCACCGAGTACCCTTTTTGGAACCGTAGCACAGGATCCGACCATGTCTTCGTAGCTTCCCATGATTTCGGTTCTTGTTTTCACACCCTGGAGGACGTGGCAATGAAAGATGGGGTACCTGAAATTATGAAGAATTCAATTGTGTTACAAACGTTTGGTGTTACATATGATCATCCTTGTCAGAAAGTTGAACATGTTGTGATACCACCGTTTGTTTCGCCGGAAAGTGTACGGAGTACGATGGAGAATTTTCCGGTGAACGGACGGCGAGATATTTGGGTTTTCTTTCGTGGGAAAATGGAGGTTCATCCTAAGAACGTTAGTGGAAGATTTTACAGCAAGAAAGTGAGAACAGTGATATGGAAAAATTTCAACAATGACCGGAGGTTTTACCTACGGAGACATAGGTTTGCCGGTTACCAGTCAGAAATTGCACGTTCGGTGTTTTGTTTATGTCCTTTGGGGTGGGCCCCATGGAGCCCTAGACTAGTTGAATCCGTTGCATTAGGTTGTGTGCCGGTAATCATAGCGGACGGTATCCGGTTACCGTTTTCCTCCGCCGTGAACTGGCCGGAGATTTCAGTCACGGTGGCGGAGAAAGATGTTTGGAGGCTGGGTGAGATATTAGAAAAAGTGGCTGCTACAAACCTTAGCATTATTCAAAGGAATTTGTGGGACCCACGTACAAGGAAAGCACTACTTTTCAATAGTAGGGTCCATGAAGGAGATGCCACGTGGCAGGTCCTACATTCTTTGAGTGAAAAGGTGGATAGGTCTTATAGGAGTTCAAGGGTTTCACGCCAATTACAATTTGACACGTAA
Protein sequence

>Msa0546520

MDQTHKKKPSKNKGYYVKMKLMHKHGIRPQQQEKNHFHKYYKWILWLSLSLYFFTSYLISNNNNHNHNNNNNIKHHQITSTTHIIKSLSQSLSIKKTTSSPQKLQKTSLKNLKIFVYDLPPKYNKVWLKNPRCKNHLFASEVAIHRALLTSDVRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLISSAVKLISTEYPFWNRSTGSDHVFVASHDFGSCFHTLEDVAMKDGVPEIMKNSIVLQTFGVTYDHPCQKVEHVVIPPFVSPESVRSTMENFPVNGRRDIWVFFRGKMEVHPKNVSGRFYSKKVRTVIWKNFNNDRRFYLRRHRFAGYQSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFSSAVNWPEISVTVAEKDVWRLGEILEKVAATNLSIIQRNLWDPRTRKALLFNSRVHEGDATWQVLHSLSEKVDRSYRSSRVSRQLQFDT*