AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682070 MtrunA17_Chr4g0028201 97.021 470 9 2 1 470 1 465 0.0 940
Msa0682070 MtrunA17_Chr2g0320251 72.294 462 103 3 7 466 5 443 0.0 686
Msa0682070 MtrunA17_Chr8g0385651 42.700 363 201 5 97 456 35 393 1.86e-101 310
Msa0682070 MtrunA17_Chr8g0385671 42.149 363 203 5 97 456 35 393 1.03e-100 308
Msa0682070 MtrunA17_Chr7g0265461 27.907 344 219 7 110 449 71 389 1.77e-33 130
Msa0682070 MtrunA17_Chr1g0179651 28.775 351 208 12 110 449 11 330 2.18e-33 129
Msa0682070 MtrunA17_Chr5g0411991 27.714 350 208 11 110 449 92 406 7.17e-32 126
Msa0682070 MtrunA17_Chr7g0265451 29.107 347 211 9 110 449 188 506 2.09e-31 126
Msa0682070 MtrunA17_Chr1g0173651 27.733 375 191 14 114 421 356 717 1.78e-29 122
Msa0682070 MtrunA17_Chr3g0131051 27.848 316 201 7 110 421 164 456 1.24e-28 118
Msa0682070 MtrunA17_Chr4g0055991 27.647 340 214 10 112 437 204 525 9.26e-28 116
Msa0682070 MtrunA17_Chr3g0137491 26.786 392 246 12 72 449 18 382 3.08e-26 110
Msa0682070 MtrunA17_Chr3g0119721 26.989 352 212 13 110 449 17 335 1.88e-25 107
Msa0682070 MtrunA17_Chr3g0120131 26.420 352 214 12 110 449 155 473 2.28e-24 105
Msa0682070 MtrunA17_Chr7g0253441 27.129 317 195 11 138 449 187 472 5.29e-24 104
Msa0682070 MtrunA17_Chr4g0064471 25.989 354 221 11 109 449 136 461 1.95e-23 102
Msa0682070 MtrunA17_Chr4g0064461 25.393 382 246 9 80 449 102 456 3.00e-23 102
Msa0682070 MtrunA17_Chr4g0039811 25.000 340 208 9 112 421 112 434 1.48e-22 100
Msa0682070 MtrunA17_Chr7g0265381 26.124 356 211 12 110 449 46 365 2.38e-21 95.5
Msa0682070 MtrunA17_Chr8g0390121 28.212 358 198 14 112 449 283 601 2.50e-21 97.1
Msa0682070 MtrunA17_Chr4g0064411 26.059 307 196 8 151 449 170 453 6.48e-21 95.1
Msa0682070 MtrunA17_Chr1g0197381 26.053 380 229 15 77 437 191 537 1.64e-20 94.4
Msa0682070 MtrunA17_Chr3g0140131 24.309 362 210 11 110 449 266 585 9.75e-20 92.0
Msa0682070 MtrunA17_Chr1g0146181 26.766 269 152 8 194 449 342 578 2.46e-18 87.8
Msa0682070 MtrunA17_Chr3g0140141 25.658 304 191 8 155 449 266 543 5.67e-18 86.7
Msa0682070 MtrunA17_Chr1g0200871 27.240 279 153 7 154 401 139 398 8.88e-16 79.7
Msa0682070 MtrunA17_Chr7g0254391 23.043 447 277 16 63 466 69 491 4.06e-15 77.8
Msa0682070 MtrunA17_Chr3g0092341 24.324 333 193 10 112 406 115 426 5.22e-15 77.4
Msa0682070 MtrunA17_Chr4g0043801 27.178 287 167 10 153 421 159 421 2.21e-14 75.1
Msa0682070 MtrunA17_Chr6g0460631 24.672 381 224 14 112 453 113 469 3.03e-14 74.7
Msa0682070 MtrunA17_Chr5g0421571 31.852 135 79 4 110 244 145 266 2.24e-13 71.2
Msa0682070 MtrunA17_Chr3g0122631 25.564 266 168 10 153 409 115 359 3.13e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682070 AT2G28110.1 64.732 448 141 6 23 460 4 444 0.0 608
Msa0682070 AT5G22940.1 64.802 429 140 5 43 469 49 468 0.0 572
Msa0682070 AT5G22940.2 61.915 449 149 4 43 469 49 497 0.0 570
Msa0682070 AT5G61840.1 41.576 368 209 5 88 453 24 387 1.12e-100 308
Msa0682070 AT1G27440.1 41.620 358 204 4 97 453 31 384 1.96e-99 305
Msa0682070 AT4G16745.1 29.581 382 217 15 77 437 171 521 1.79e-32 130
Msa0682070 AT4G38040.1 28.080 349 208 11 110 449 102 416 2.23e-31 125
Msa0682070 AT4G16745.2 30.214 374 207 16 77 428 171 512 2.90e-31 127
Msa0682070 AT4G38040.2 28.660 321 188 10 110 421 102 390 1.29e-30 123
Msa0682070 AT5G11130.2 29.085 306 186 8 151 449 42 323 2.77e-28 115
Msa0682070 AT3G57630.3 28.409 352 174 10 114 399 350 689 3.97e-28 118
Msa0682070 AT3G57630.1 28.409 352 174 10 114 399 350 689 3.97e-28 118
Msa0682070 AT3G57630.2 28.409 352 174 10 114 399 348 687 4.38e-28 118
Msa0682070 AT5G11130.1 28.367 349 213 10 110 449 147 467 1.00e-27 115
Msa0682070 AT5G33290.1 28.173 323 196 9 138 449 192 489 3.26e-26 111
Msa0682070 AT5G20260.1 28.094 299 187 9 157 449 48 324 1.08e-24 104
Msa0682070 AT5G03795.1 27.528 356 205 10 110 449 188 506 1.35e-24 107
Msa0682070 AT5G20260.3 28.094 299 187 9 157 449 75 351 1.47e-24 105
Msa0682070 AT5G20260.2 28.094 299 187 9 157 449 180 456 2.63e-24 105
Msa0682070 AT3G42180.4 25.915 328 197 9 138 449 33 330 5.13e-24 103
Msa0682070 AT3G42180.1 26.524 328 195 10 138 449 162 459 5.42e-24 104
Msa0682070 AT5G25310.1 25.691 362 230 10 100 449 136 470 3.28e-23 102
Msa0682070 AT5G37000.1 29.961 257 151 7 157 406 268 502 4.33e-23 102
Msa0682070 AT5G19670.1 26.050 357 207 13 112 449 281 599 4.32e-22 99.8
Msa0682070 AT5G19670.2 26.050 357 207 13 112 449 281 599 4.32e-22 99.8
Msa0682070 AT4G32790.1 27.606 355 208 14 110 449 265 585 2.14e-21 97.8
Msa0682070 AT4G32790.3 27.606 355 208 14 110 449 265 585 2.14e-21 97.8
Msa0682070 AT4G32790.2 27.606 355 208 14 110 449 265 585 2.14e-21 97.8
Msa0682070 AT3G07620.1 25.779 353 216 12 110 449 130 449 7.42e-21 95.5
Msa0682070 AT5G16890.1 25.641 351 192 15 112 421 118 440 2.93e-20 94.0
Msa0682070 AT5G25820.1 26.781 351 218 15 110 449 322 644 3.54e-20 94.0
Msa0682070 AT5G11610.1 28.571 308 179 12 110 406 218 495 1.89e-19 91.7
Msa0682070 AT5G44930.2 26.966 267 158 9 153 409 125 364 3.88e-15 77.8
Msa0682070 AT5G44930.1 26.966 267 158 9 153 409 125 364 3.88e-15 77.8
Msa0682070 AT5G44930.3 26.966 267 158 9 153 409 125 364 3.99e-15 77.4
Msa0682070 AT3G45400.1 28.627 255 154 10 154 401 154 387 1.73e-14 75.9
Msa0682070 AT2G35100.1 26.148 283 170 10 153 421 126 383 7.31e-14 73.9
Msa0682070 AT3G03650.1 23.038 395 235 13 58 406 60 431 2.32e-13 72.4
Msa0682070 AT1G74680.1 25.767 326 175 13 112 394 75 376 7.96e-13 70.9
Msa0682070 AT1G34270.1 24.495 396 232 12 45 399 20 389 2.20e-12 69.3

Find 142 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATCCATTTCATTTAT+TGG 0.085973 4_4:-43065218 None:intergenic
TATGCTTTGGTGTTATATTT+TGG 0.135988 4_4:+43067765 Msa0682070:three_prime_UTR
ATTTGTAATATTTATGAAAA+TGG 0.174296 4_4:-43065334 None:intergenic
AGCCAGTCTTTGTTGTATTT+TGG 0.177936 4_4:-43065590 None:intergenic
AATATTACAAATGGATTCTT+TGG 0.193458 4_4:+43065345 Msa0682070:CDS
TGAACGGACGGCGAGATATT+TGG 0.204415 4_4:+43066183 Msa0682070:CDS
TGTAACTTCAGCACAGTTAA+TGG 0.221290 4_4:+43065743 Msa0682070:CDS
ATTGAATTCTTCATAATTTC+AGG 0.233449 4_4:-43066044 None:intergenic
TCTCCACCGAGTACCCTTTC+TGG 0.234469 4_4:+43065819 Msa0682070:CDS
AATCTTCCACTAACGTTCTT+AGG 0.242624 4_4:-43066236 None:intergenic
ATCGTATTCCGTACACTTTC+CGG 0.254767 4_4:-43066146 None:intergenic
ATTACGTGTCAAATTGTAAT+TGG 0.266113 4_4:-43067343 None:intergenic
TAGTACTTCGAGTATATTAA+TGG 0.286963 4_4:+43067557 Msa0682070:three_prime_UTR
ACTCTTTACCTCTAATAAAT+AGG 0.293121 4_4:-43067830 None:intergenic
AAAAGGTGGATAGGTCTTAT+AGG 0.332673 4_4:+43067303 Msa0682070:CDS
CTAGTTGAATCCGTTGCATT+AGG 0.341394 4_4:+43067029 Msa0682070:CDS
TCCAAGCACCTATTTATTAG+AGG 0.347844 4_4:+43067822 Msa0682070:three_prime_UTR
GAACGGACGGCGAGATATTT+GGG 0.347966 4_4:+43066184 Msa0682070:CDS
CTACGGAGACATAGGTTTGC+CGG 0.360281 4_4:+43066936 Msa0682070:CDS
ATTACAATTTGACACGTAAT+GGG 0.364936 4_4:+43067346 Msa0682070:exon
GGAAAGTGAGAACAGTGATA+TGG 0.375416 4_4:+43066883 Msa0682070:intron
AATTACAATTTGACACGTAA+TGG 0.378306 4_4:+43067345 Msa0682070:CDS
TTCGTAGCTTCCCATGATTT+CGG 0.388368 4_4:+43065869 Msa0682070:CDS
GTCCTTTGGGGTGGGCCCCA+TGG 0.390095 4_4:+43066997 Msa0682070:CDS
TCAATTGTGTTACAAACGTT+TGG 0.390232 4_4:+43066062 Msa0682070:CDS
GCCACGTGGCATCTCCTTCA+TGG 0.397742 4_4:-43067259 None:intergenic
TAATCATAGCGGACGGTATC+CGG 0.403149 4_4:+43067063 Msa0682070:CDS
GTTAATGGCTTCCCTGCAAT+TGG 0.408231 4_4:+43065758 Msa0682070:CDS
AAGAAGAAATCAGCTTCATA+AGG 0.417900 4_4:-43065701 None:intergenic
TTGTGGGTGATGACATTAAT+GGG 0.420910 4_4:+43067526 Msa0682070:three_prime_UTR
TGACAGGAAAGAAAGAATTA+AGG 0.424216 4_4:-43065081 None:intergenic
CGGCGGAGGAAAACGGTAAC+CGG 0.425078 4_4:-43067082 None:intergenic
TGCGATTTCTGACTGGTAAC+CGG 0.425882 4_4:-43066955 None:intergenic
AAGTTACATGAAACGTAAAC+TGG 0.432735 4_4:-43065728 None:intergenic
CACACATTGTGTTTATTGCA+TGG 0.435766 4_4:+43067441 Msa0682070:three_prime_UTR
GAACGTGCATGACCAATTGC+AGG 0.436123 4_4:-43065770 None:intergenic
AATTATTAGTGGTTTACAGC+TGG 0.439511 4_4:+43067497 Msa0682070:three_prime_UTR
GAAAACAAGAACCGAAATCA+TGG 0.441468 4_4:-43065880 None:intergenic
ATGTCCGTGCGGCTTGGAAA+AGG 0.441605 4_4:+43067602 Msa0682070:three_prime_UTR
GGTAAAGAGTGCTTACATAT+AGG 0.453105 4_4:+43067843 Msa0682070:three_prime_UTR
CCTACATTCTTTGAGTGAAA+AGG 0.453638 4_4:+43067286 Msa0682070:CDS
ACACGTAATGGGTATGCATT+GGG 0.454670 4_4:+43067357 Msa0682070:exon
CAACTAGTCTAGGGCTCCAT+GGG 0.458394 4_4:-43067013 None:intergenic
GCAACGGATTCAACTAGTCT+AGG 0.463244 4_4:-43067023 None:intergenic
CATTATTCAAAGGAATTTGT+GGG 0.469520 4_4:+43067196 Msa0682070:CDS
TTGTTTCGCCGGAAAGTGTA+CGG 0.472394 4_4:+43066138 Msa0682070:CDS
GACACGTAATGGGTATGCAT+TGG 0.472969 4_4:+43067356 Msa0682070:exon
GCATTATTCAAAGGAATTTG+TGG 0.473236 4_4:+43067195 Msa0682070:CDS
GATTCGATGTCCGTGCGGCT+TGG 0.473429 4_4:+43067596 Msa0682070:three_prime_UTR
ATACCGTCCGCTATGATTAC+CGG 0.473599 4_4:-43067059 None:intergenic
GGAGAAAGATGTTTGGAGGC+TGG 0.479889 4_4:+43067136 Msa0682070:CDS
TTTGTGGGTGATGACATTAA+TGG 0.483377 4_4:+43067525 Msa0682070:three_prime_UTR
CGGTGGCGGAGAAAGATGTT+TGG 0.483620 4_4:+43067129 Msa0682070:CDS
TTGTTTATGTCCTTTGGGGT+GGG 0.483838 4_4:+43066989 Msa0682070:CDS
ATATCTCGCCGTCCGTTCAC+CGG 0.484215 4_4:-43066179 None:intergenic
TCAACTAGTCTAGGGCTCCA+TGG 0.487427 4_4:-43067014 None:intergenic
TGAAGGAGATGCCACGTGGC+AGG 0.487992 4_4:+43067262 Msa0682070:CDS
ACACATTGTGTTTATTGCAT+GGG 0.488027 4_4:+43067442 Msa0682070:three_prime_UTR
TTATGTTATTGTTGTTGTTG+TGG 0.489317 4_4:-43065427 None:intergenic
CCAGTCAGAAATCGCACGTT+CGG 0.494066 4_4:+43066962 Msa0682070:CDS
TGAAATCTCCGGCCAGTTCA+CGG 0.495124 4_4:-43067102 None:intergenic
GAGGACGTGGCAATGAAAGA+TGG 0.495923 4_4:+43066017 Msa0682070:CDS
ATAGGTCTTATAGGAGTTCA+AGG 0.496139 4_4:+43067312 Msa0682070:CDS
ACCTCTAATAAATAGGTGCT+TGG 0.497388 4_4:-43067823 None:intergenic
ATGAGAGGGAAAGAGATTGA+AGG 0.497908 4_4:-43065179 None:intergenic
TTACAAAATCTACCATCCAT+TGG 0.502404 4_4:-43067679 None:intergenic
GGAAAGAAAGAATTAAGGTA+AGG 0.502608 4_4:-43065076 None:intergenic
CAGTTCACGGCGGAGGAAAA+CGG 0.502991 4_4:-43067089 None:intergenic
GAGAAAGATGTTTGGAGGCT+GGG 0.503317 4_4:+43067137 Msa0682070:CDS
GATACCACCGTTTGTTTCGC+CGG 0.503663 4_4:+43066127 Msa0682070:CDS
CCGAACGTGCGATTTCTGAC+TGG 0.504365 4_4:-43066962 None:intergenic
AATTCCTTTGAATAATGCTA+AGG 0.505493 4_4:-43067190 None:intergenic
CTGTGCTACGGTTCCAGAAA+GGG 0.508197 4_4:-43065832 None:intergenic
CACCAAAATACAACAAAGAC+TGG 0.508928 4_4:+43065588 Msa0682070:CDS
TTCCTCCGCCGTGAACTGGC+CGG 0.509651 4_4:+43067094 Msa0682070:CDS
CTCCGGCCAGTTCACGGCGG+AGG 0.510218 4_4:-43067096 None:intergenic
GTTCATCCTAAGAACGTTAG+TGG 0.510459 4_4:+43066230 Msa0682070:CDS
AGAAGAAATCAGCTTCATAA+GGG 0.512054 4_4:-43065700 None:intergenic
ACACTTTCCGGCGAAACAAA+CGG 0.517832 4_4:-43066134 None:intergenic
AGGACGTGGCAATGAAAGAT+GGG 0.525036 4_4:+43066018 Msa0682070:CDS
CTCCATGGGGCCCACCCCAA+AGG 0.530643 4_4:-43066999 None:intergenic
GGGAAAGAGATTGAAGGTGA+AGG 0.532597 4_4:-43065173 None:intergenic
GAAAGAATTAAGGTAAGGAA+AGG 0.532748 4_4:-43065071 None:intergenic
TTTGTTTATGTCCTTTGGGG+TGG 0.541387 4_4:+43066988 Msa0682070:CDS
CCTGTGCTACGGTTCCAGAA+AGG 0.547303 4_4:-43065833 None:intergenic
AAATCATCATGCAAATCCAA+TGG 0.553304 4_4:+43067663 Msa0682070:three_prime_UTR
CAAACCTTAGCATTATTCAA+AGG 0.554490 4_4:+43067186 Msa0682070:CDS
TTCAATAGTAGGGTCCATGA+AGG 0.556540 4_4:+43067245 Msa0682070:CDS
CTTTGAGTGAAAAGGTGGAT+AGG 0.557127 4_4:+43067294 Msa0682070:CDS
ATTTGTGGGACCCACGTACA+AGG 0.557205 4_4:+43067210 Msa0682070:CDS
CCTTTCTGGAACCGTAGCAC+AGG 0.563639 4_4:+43065833 Msa0682070:CDS
CGTTGCATTAGGTTGTGTGC+CGG 0.564884 4_4:+43067040 Msa0682070:CDS
TGGCGGAGAAAGATGTTTGG+AGG 0.571787 4_4:+43067132 Msa0682070:CDS
CAACGGATTCAACTAGTCTA+GGG 0.572251 4_4:-43067022 None:intergenic
ACATTCTTTGAGTGAAAAGG+TGG 0.573238 4_4:+43067289 Msa0682070:CDS
AAAACTATAAGAAGATGAGA+GGG 0.574585 4_4:-43065193 None:intergenic
CACATTGTGTTTATTGCATG+GGG 0.578474 4_4:+43067443 Msa0682070:three_prime_UTR
GTCTCCGTAGGTAAAACCTC+CGG 0.581628 4_4:-43066923 None:intergenic
ACATGTTCAACTTTCTGACA+TGG 0.583329 4_4:-43066101 None:intergenic
CATCATGCAAATCCAATGGA+TGG 0.583519 4_4:+43067667 Msa0682070:three_prime_UTR
AAAACAAGAACCGAAATCAT+GGG 0.585303 4_4:-43065879 None:intergenic
ATATACTCGAAGTACTAATG+TGG 0.586482 4_4:-43067551 None:intergenic
CATGGGAAGCTACGAAGACA+TGG 0.588112 4_4:-43065862 None:intergenic
CGAGTATATTAATGGTGACA+TGG 0.589352 4_4:+43067565 Msa0682070:three_prime_UTR
TAGGTCTTATAGGAGTTCAA+GGG 0.590547 4_4:+43067313 Msa0682070:CDS
GCTAAGCAAGAAACAGTGAC+AGG 0.595419 4_4:-43065097 None:intergenic
GGAGATTTCAGTCACGGTGG+CGG 0.597754 4_4:+43067115 Msa0682070:CDS
TTTCTTTCGTGGGAAAATGG+AGG 0.599457 4_4:+43066208 Msa0682070:CDS
TGAAGGTGAAGGATGTTGAG+AGG 0.601036 4_4:-43065162 None:intergenic
AATTAAGGTAAGGAAAGGAA+AGG 0.601270 4_4:-43065066 None:intergenic
CGGCACACAACCTAATGCAA+CGG 0.603395 4_4:-43067039 None:intergenic
GTAGTGCTTTCCTTGTACGT+GGG 0.605083 4_4:-43067220 None:intergenic
TGGTCTGGTGTGAAGAGAAG+TGG 0.605700 4_4:-43065122 None:intergenic
ACGGTTCCAGAAAGGGTACT+CGG 0.610843 4_4:-43065825 None:intergenic
AGGATGTTGAGAGGTTGAGA+AGG 0.611251 4_4:-43065153 None:intergenic
AGTAGTGCTTTCCTTGTACG+TGG 0.619416 4_4:-43067221 None:intergenic
GCCACCGTGACTGAAATCTC+CGG 0.620485 4_4:-43067113 None:intergenic
CCTTCACTGTTCAAAAGCCA+CGG 0.625638 4_4:-43067400 None:intergenic
CGGCAAACCTATGTCTCCGT+AGG 0.630204 4_4:-43066935 None:intergenic
CATGGTCGGATCCTGTGCTA+CGG 0.633138 4_4:-43065844 None:intergenic
CTGGCCGGAGATTTCAGTCA+CGG 0.634104 4_4:+43067109 Msa0682070:CDS
AACGTGCATGACCAATTGCA+GGG 0.635491 4_4:-43065769 None:intergenic
TATACTCGAAGTACTAATGT+GGG 0.637116 4_4:-43067550 None:intergenic
TGCTTGGATATAGAGACGGA+GGG 0.644926 4_4:-43067807 None:intergenic
TAGGTGCTTGGATATAGAGA+CGG 0.650151 4_4:-43067811 None:intergenic
GTGCTTGGATATAGAGACGG+AGG 0.654264 4_4:-43067808 None:intergenic
AGAGTGCTTACATATAGGAA+CGG 0.654452 4_4:+43067848 Msa0682070:three_prime_UTR
ATGAAACTCATGCATAAACA+TGG 0.655722 4_4:+43065284 Msa0682070:CDS
AAAATTTCAACAATGACCGG+AGG 0.658957 4_4:+43066907 Msa0682070:CDS
GGAAGCTACGAAGACATGGT+CGG 0.668244 4_4:-43065858 None:intergenic
GGACGTGGCAATGAAAGATG+GGG 0.696171 4_4:+43066019 Msa0682070:CDS
GGAAAGTGTACGGAATACGA+TGG 0.698014 4_4:+43066148 Msa0682070:CDS
GTGCCGGTAATCATAGCGGA+CGG 0.703809 4_4:+43067056 Msa0682070:CDS
AGAATGTAGGACCTGCCACG+TGG 0.729796 4_4:-43067273 None:intergenic
TCCATGAAGGAGATGCCACG+TGG 0.733964 4_4:+43067258 Msa0682070:CDS
GCCGGAGATTTCAGTCACGG+TGG 0.735933 4_4:+43067112 Msa0682070:CDS
AACTAGTCTAGGGCTCCATG+GGG 0.744946 4_4:-43067012 None:intergenic
GTTCCAGAAAGGGTACTCGG+TGG 0.747263 4_4:-43065822 None:intergenic
TTGTGTGCCGGTAATCATAG+CGG 0.757421 4_4:+43067052 Msa0682070:CDS
GCATTGATTCGATGTCCGTG+CGG 0.770353 4_4:+43067591 Msa0682070:three_prime_UTR
AATCTCCGGCCAGTTCACGG+CGG 0.780614 4_4:-43067099 None:intergenic
CTTTCCGGCGAAACAAACGG+TGG 0.795710 4_4:-43066131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTAATATTTATGAAAA+TGG - chr4_4:43065337-43065356 None:intergenic 10.0%
!!! ATTTTCATAAATATTACAAA+TGG + chr4_4:43065336-43065355 Msa0682070:CDS 10.0%
!!! GAAATTTTTAAAATTATTAG+TGG + chr4_4:43067486-43067505 Msa0682070:three_prime_UTR 10.0%
!!! TTTTTTTTTGTTGTTGTTTT+TGG + chr4_4:43065985-43066004 Msa0682070:intron 15.0%
!!! TTTTTTTTGTTGTTGTTTTT+GGG + chr4_4:43065986-43066005 Msa0682070:intron 15.0%
!!! AATTAAGATTTTAATTAGAG+AGG - chr4_4:43066293-43066312 None:intergenic 15.0%
!! CAATAAAAAGTAATATTTGT+TGG + chr4_4:43066390-43066409 Msa0682070:intron 15.0%
!!! TAAAAAAAGTGTATAAATGA+AGG + chr4_4:43066478-43066497 Msa0682070:intron 15.0%
!!! AAAAAAAGTGTATAAATGAA+GGG + chr4_4:43066479-43066498 Msa0682070:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr4_4:43066543-43066562 Msa0682070:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr4_4:43066544-43066563 Msa0682070:intron 15.0%
!! ATATGAGACAAAATTAATAT+AGG + chr4_4:43066678-43066697 Msa0682070:intron 15.0%
!! TAATATGAAAATTAGTTCAT+TGG - chr4_4:43066726-43066745 None:intergenic 15.0%
!!! GTTTTTTCCAATAAATGAAA+TGG + chr4_4:43065211-43065230 Msa0682070:exon 20.0%
!!! AATATTACAAATGGATTCTT+TGG + chr4_4:43065345-43065364 Msa0682070:CDS 20.0%
!!! AGAAAGTGATTTTATGATAT+GGG - chr4_4:43065477-43065496 None:intergenic 20.0%
!!! ATAAATGATTTTTGCATCTT+GGG - chr4_4:43065622-43065641 None:intergenic 20.0%
!!! AATAAATGATTTTTGCATCT+TGG - chr4_4:43065623-43065642 None:intergenic 20.0%
!!! TTGGTTTTTTTTTTTTACCA+GGG - chr4_4:43065909-43065928 None:intergenic 20.0%
!! ATTGAATTCTTCATAATTTC+AGG - chr4_4:43066047-43066066 None:intergenic 20.0%
!!! AAAAAAGTGTATAAATGAAG+GGG + chr4_4:43066480-43066499 Msa0682070:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr4_4:43066576-43066595 Msa0682070:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_4:43066613-43066632 Msa0682070:intron 20.0%
!! GGAAGAATAAATGAAAAATT+AGG + chr4_4:43067464-43067483 Msa0682070:three_prime_UTR 20.0%
!!! TTTTTCGAAATTTTATGCTT+TGG + chr4_4:43067752-43067771 Msa0682070:three_prime_UTR 20.0%
! AAAACTATAAGAAGATGAGA+GGG - chr4_4:43065196-43065215 None:intergenic 25.0%
! AAAAACTATAAGAAGATGAG+AGG - chr4_4:43065197-43065216 None:intergenic 25.0%
! TTCTGATCCATTTCATTTAT+TGG - chr4_4:43065221-43065240 None:intergenic 25.0%
! AAAAAACCCTCAAAAAACAA+AGG + chr4_4:43065248-43065267 Msa0682070:CDS 25.0%
!!! TAGTATCCTTTGTTTTTTGA+GGG - chr4_4:43065257-43065276 None:intergenic 25.0%
!!! ATAGTATCCTTTGTTTTTTG+AGG - chr4_4:43065258-43065277 None:intergenic 25.0%
!! TTATGTTATTGTTGTTGTTG+TGG - chr4_4:43065430-43065449 None:intergenic 25.0%
!! GAGAAAGTGATTTTATGATA+TGG - chr4_4:43065478-43065497 None:intergenic 25.0%
!!! TGTTGTTTTTTTGATGGATA+AGG - chr4_4:43065504-43065523 None:intergenic 25.0%
!!! TGATGATGTTGTTTTTTTGA+TGG - chr4_4:43065510-43065529 None:intergenic 25.0%
!!! CTAGTTTTTTGAAGTTTTTG+AGG - chr4_4:43065533-43065552 None:intergenic 25.0%
!!! GTTGGTTTTTTTTTTTTACC+AGG - chr4_4:43065910-43065929 None:intergenic 25.0%
! TTTATTGTGAGAGACAAATT+GGG - chr4_4:43066377-43066396 None:intergenic 25.0%
!! TTTTATTGTGAGAGACAAAT+TGG - chr4_4:43066378-43066397 None:intergenic 25.0%
!! TTGAAATGGTTCAGTTATTT+TGG + chr4_4:43066590-43066609 Msa0682070:intron 25.0%
!!! TGAAATGGTTCAGTTATTTT+GGG + chr4_4:43066591-43066610 Msa0682070:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_4:43066612-43066631 Msa0682070:intron 25.0%
!! AATTTATGTTTTGCCTTTGA+AGG + chr4_4:43066862-43066881 Msa0682070:intron 25.0%
! AATTCCTTTGAATAATGCTA+AGG - chr4_4:43067193-43067212 None:intergenic 25.0%
! CATTATTCAAAGGAATTTGT+GGG + chr4_4:43067196-43067215 Msa0682070:CDS 25.0%
! ATTACGTGTCAAATTGTAAT+TGG - chr4_4:43067346-43067365 None:intergenic 25.0%
! AATTACAATTTGACACGTAA+TGG + chr4_4:43067345-43067364 Msa0682070:CDS 25.0%
! ATTACAATTTGACACGTAAT+GGG + chr4_4:43067346-43067365 Msa0682070:exon 25.0%
! TAGTACTTCGAGTATATTAA+TGG + chr4_4:43067557-43067576 Msa0682070:three_prime_UTR 25.0%
!!! TATGCTTTGGTGTTATATTT+TGG + chr4_4:43067765-43067784 Msa0682070:three_prime_UTR 25.0%
! ACTCTTTACCTCTAATAAAT+AGG - chr4_4:43067833-43067852 None:intergenic 25.0%
AATTAAGGTAAGGAAAGGAA+AGG - chr4_4:43065069-43065088 None:intergenic 30.0%
GAAAGAATTAAGGTAAGGAA+AGG - chr4_4:43065074-43065093 None:intergenic 30.0%
GGAAAGAAAGAATTAAGGTA+AGG - chr4_4:43065079-43065098 None:intergenic 30.0%
TGACAGGAAAGAAAGAATTA+AGG - chr4_4:43065084-43065103 None:intergenic 30.0%
ATGAAACTCATGCATAAACA+TGG + chr4_4:43065284-43065303 Msa0682070:CDS 30.0%
!!! TGGTTTTTTTCTTGTTGTTG+AGG - chr4_4:43065317-43065336 None:intergenic 30.0%
AGAAGAAATCAGCTTCATAA+GGG - chr4_4:43065703-43065722 None:intergenic 30.0%
AAGAAGAAATCAGCTTCATA+AGG - chr4_4:43065704-43065723 None:intergenic 30.0%
AAGTTACATGAAACGTAAAC+TGG - chr4_4:43065731-43065750 None:intergenic 30.0%
AAAACAAGAACCGAAATCAT+GGG - chr4_4:43065882-43065901 None:intergenic 30.0%
!!! TTGTTGTTTTTGGGTTTTGA+AGG + chr4_4:43065995-43066014 Msa0682070:intron 30.0%
TCAATTGTGTTACAAACGTT+TGG + chr4_4:43066062-43066081 Msa0682070:CDS 30.0%
!! ATATTTGGGTTTTCTTTCGT+GGG + chr4_4:43066198-43066217 Msa0682070:CDS 30.0%
! GGCTAGTTGACAAAAAAAAT+TGG - chr4_4:43066705-43066724 None:intergenic 30.0%
GGAAAAATTTCAACAATGAC+CGG + chr4_4:43066904-43066923 Msa0682070:CDS 30.0%
!!! GTGTTTTGTTTATGTCCTTT+GGG + chr4_4:43066984-43067003 Msa0682070:CDS 30.0%
!!! TGTTTTGTTTATGTCCTTTG+GGG + chr4_4:43066985-43067004 Msa0682070:CDS 30.0%
CAAACCTTAGCATTATTCAA+AGG + chr4_4:43067186-43067205 Msa0682070:CDS 30.0%
GCATTATTCAAAGGAATTTG+TGG + chr4_4:43067195-43067214 Msa0682070:CDS 30.0%
!! AAGCACTACTTTTCAATAGT+AGG + chr4_4:43067234-43067253 Msa0682070:CDS 30.0%
!! AGCACTACTTTTCAATAGTA+GGG + chr4_4:43067235-43067254 Msa0682070:CDS 30.0%
ACACATTGTGTTTATTGCAT+GGG + chr4_4:43067442-43067461 Msa0682070:three_prime_UTR 30.0%
AATTATTAGTGGTTTACAGC+TGG + chr4_4:43067497-43067516 Msa0682070:three_prime_UTR 30.0%
! TTTACAGCTGGAAATTTTTG+TGG + chr4_4:43067509-43067528 Msa0682070:three_prime_UTR 30.0%
! TTACAGCTGGAAATTTTTGT+GGG + chr4_4:43067510-43067529 Msa0682070:three_prime_UTR 30.0%
! TATACTCGAAGTACTAATGT+GGG - chr4_4:43067553-43067572 None:intergenic 30.0%
! ATATACTCGAAGTACTAATG+TGG - chr4_4:43067554-43067573 None:intergenic 30.0%
AAATCATCATGCAAATCCAA+TGG + chr4_4:43067663-43067682 Msa0682070:three_prime_UTR 30.0%
TTACAAAATCTACCATCCAT+TGG - chr4_4:43067682-43067701 None:intergenic 30.0%
!! CAGTCTTTGTTGTATTTTGG+TGG - chr4_4:43065590-43065609 None:intergenic 35.0%
CACCAAAATACAACAAAGAC+TGG + chr4_4:43065588-43065607 Msa0682070:CDS 35.0%
!! AGCCAGTCTTTGTTGTATTT+TGG - chr4_4:43065593-43065612 None:intergenic 35.0%
TGTAACTTCAGCACAGTTAA+TGG + chr4_4:43065743-43065762 Msa0682070:CDS 35.0%
GAAAACAAGAACCGAAATCA+TGG - chr4_4:43065883-43065902 None:intergenic 35.0%
CATTTGTAACATGAAGCTGT+TGG - chr4_4:43065928-43065947 None:intergenic 35.0%
!!! TTGTTTTTGGGTTTTGAAGG+AGG + chr4_4:43065998-43066017 Msa0682070:intron 35.0%
ACATGTTCAACTTTCTGACA+TGG - chr4_4:43066104-43066123 None:intergenic 35.0%
! GAATACGATGGAGAATTTTC+CGG + chr4_4:43066160-43066179 Msa0682070:CDS 35.0%
!! GATATTTGGGTTTTCTTTCG+TGG + chr4_4:43066197-43066216 Msa0682070:CDS 35.0%
AATCTTCCACTAACGTTCTT+AGG - chr4_4:43066239-43066258 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr4_4:43066443-43066462 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr4_4:43066444-43066463 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr4_4:43066457-43066476 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG + chr4_4:43066487-43066506 Msa0682070:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr4_4:43066626-43066645 Msa0682070:intron 35.0%
CCATAGCCAAATTAGTTCAT+GGG - chr4_4:43066785-43066804 None:intergenic 35.0%
ACCATAGCCAAATTAGTTCA+TGG - chr4_4:43066786-43066805 None:intergenic 35.0%
AAAATTTCAACAATGACCGG+AGG + chr4_4:43066907-43066926 Msa0682070:CDS 35.0%
!!! GGTGTTTTGTTTATGTCCTT+TGG + chr4_4:43066983-43067002 Msa0682070:CDS 35.0%
GGGTGAGATATTAGAAAAAG+TGG + chr4_4:43067157-43067176 Msa0682070:CDS 35.0%
! CCTTTTCACTCAAAGAATGT+AGG - chr4_4:43067289-43067308 None:intergenic 35.0%
CCTACATTCTTTGAGTGAAA+AGG + chr4_4:43067286-43067305 Msa0682070:CDS 35.0%
ACATTCTTTGAGTGAAAAGG+TGG + chr4_4:43067289-43067308 Msa0682070:CDS 35.0%
! AAAAGGTGGATAGGTCTTAT+AGG + chr4_4:43067303-43067322 Msa0682070:CDS 35.0%
! ATAGGTCTTATAGGAGTTCA+AGG + chr4_4:43067312-43067331 Msa0682070:CDS 35.0%
! TAGGTCTTATAGGAGTTCAA+GGG + chr4_4:43067313-43067332 Msa0682070:CDS 35.0%
CACACATTGTGTTTATTGCA+TGG + chr4_4:43067441-43067460 Msa0682070:three_prime_UTR 35.0%
CACATTGTGTTTATTGCATG+GGG + chr4_4:43067443-43067462 Msa0682070:three_prime_UTR 35.0%
TTTGTGGGTGATGACATTAA+TGG + chr4_4:43067525-43067544 Msa0682070:three_prime_UTR 35.0%
TTGTGGGTGATGACATTAAT+GGG + chr4_4:43067526-43067545 Msa0682070:three_prime_UTR 35.0%
CGAGTATATTAATGGTGACA+TGG + chr4_4:43067565-43067584 Msa0682070:three_prime_UTR 35.0%
TCCAAGCACCTATTTATTAG+AGG + chr4_4:43067822-43067841 Msa0682070:three_prime_UTR 35.0%
ACCTCTAATAAATAGGTGCT+TGG - chr4_4:43067826-43067845 None:intergenic 35.0%
!! GGTAAAGAGTGCTTACATAT+AGG + chr4_4:43067843-43067862 Msa0682070:three_prime_UTR 35.0%
! AGAGTGCTTACATATAGGAA+CGG + chr4_4:43067848-43067867 Msa0682070:three_prime_UTR 35.0%
!!! AGGTTGAGAAGGTGTTTTCT+TGG - chr4_4:43065145-43065164 None:intergenic 40.0%
ATGAGAGGGAAAGAGATTGA+AGG - chr4_4:43065182-43065201 None:intergenic 40.0%
TTCGTAGCTTCCCATGATTT+CGG + chr4_4:43065869-43065888 Msa0682070:CDS 40.0%
ATCGTATTCCGTACACTTTC+CGG - chr4_4:43066149-43066168 None:intergenic 40.0%
! ATGGAGAATTTTCCGGTGAA+CGG + chr4_4:43066167-43066186 Msa0682070:CDS 40.0%
! GGTTTTCTTTCGTGGGAAAA+TGG + chr4_4:43066205-43066224 Msa0682070:CDS 40.0%
TTTCTTTCGTGGGAAAATGG+AGG + chr4_4:43066208-43066227 Msa0682070:CDS 40.0%
GTTCATCCTAAGAACGTTAG+TGG + chr4_4:43066230-43066249 Msa0682070:CDS 40.0%
! GTGAGAGACAAATTGGGTTT+TGG - chr4_4:43066371-43066390 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr4_4:43066441-43066460 Msa0682070:intron 40.0%
AAATATTACTCCCTCCGTTC+CGG - chr4_4:43066648-43066667 None:intergenic 40.0%
CACTGACCCATGAACTAATT+TGG + chr4_4:43066776-43066795 Msa0682070:intron 40.0%
CCCATGAACTAATTTGGCTA+TGG + chr4_4:43066782-43066801 Msa0682070:intron 40.0%
CTGTTCTCACTTTCCTTCAA+AGG - chr4_4:43066878-43066897 None:intergenic 40.0%
GGAAAGTGAGAACAGTGATA+TGG + chr4_4:43066883-43066902 Msa0682070:intron 40.0%
! TTTGTTTATGTCCTTTGGGG+TGG + chr4_4:43066988-43067007 Msa0682070:CDS 40.0%
!! TTGTTTATGTCCTTTGGGGT+GGG + chr4_4:43066989-43067008 Msa0682070:CDS 40.0%
! CAACGGATTCAACTAGTCTA+GGG - chr4_4:43067025-43067044 None:intergenic 40.0%
CTAGTTGAATCCGTTGCATT+AGG + chr4_4:43067029-43067048 Msa0682070:CDS 40.0%
TTCAATAGTAGGGTCCATGA+AGG + chr4_4:43067245-43067264 Msa0682070:CDS 40.0%
CTTTGAGTGAAAAGGTGGAT+AGG + chr4_4:43067294-43067313 Msa0682070:CDS 40.0%
!! ACACGTAATGGGTATGCATT+GGG + chr4_4:43067357-43067376 Msa0682070:exon 40.0%
!!! CATTTTGATTCTTCACACCG+TGG + chr4_4:43067383-43067402 Msa0682070:three_prime_UTR 40.0%
CATCATGCAAATCCAATGGA+TGG + chr4_4:43067667-43067686 Msa0682070:three_prime_UTR 40.0%
TAGGTGCTTGGATATAGAGA+CGG - chr4_4:43067814-43067833 None:intergenic 40.0%
GCTAAGCAAGAAACAGTGAC+AGG - chr4_4:43065100-43065119 None:intergenic 45.0%
!!! GAGAAGGTGTTTTCTTGGTC+TGG - chr4_4:43065140-43065159 None:intergenic 45.0%
AGGATGTTGAGAGGTTGAGA+AGG - chr4_4:43065156-43065175 None:intergenic 45.0%
TGAAGGTGAAGGATGTTGAG+AGG - chr4_4:43065165-43065184 None:intergenic 45.0%
GGGAAAGAGATTGAAGGTGA+AGG - chr4_4:43065176-43065195 None:intergenic 45.0%
GTTAATGGCTTCCCTGCAAT+TGG + chr4_4:43065758-43065777 Msa0682070:CDS 45.0%
AACGTGCATGACCAATTGCA+GGG - chr4_4:43065772-43065791 None:intergenic 45.0%
AGGACGTGGCAATGAAAGAT+GGG + chr4_4:43066018-43066037 Msa0682070:CDS 45.0%
ACACTTTCCGGCGAAACAAA+CGG - chr4_4:43066137-43066156 None:intergenic 45.0%
! TTGTTTCGCCGGAAAGTGTA+CGG + chr4_4:43066138-43066157 Msa0682070:CDS 45.0%
! GGAAAGTGTACGGAATACGA+TGG + chr4_4:43066148-43066167 Msa0682070:CDS 45.0%
! AGAATTTTCCGGTGAACGGA+CGG + chr4_4:43066171-43066190 Msa0682070:CDS 45.0%
!! AAAAAGTACTACCTCCGTCC+CGG + chr4_4:43066422-43066441 Msa0682070:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr4_4:43066439-43066458 None:intergenic 45.0%
ATGGGTCAGTTATTCCGGAA+CGG + chr4_4:43066631-43066650 Msa0682070:intron 45.0%
! ATGACCGGAGGTTTTACCTA+CGG + chr4_4:43066919-43066938 Msa0682070:CDS 45.0%
! GGTTTTACCTACGGAGACAT+AGG + chr4_4:43066928-43066947 Msa0682070:CDS 45.0%
TGCGATTTCTGACTGGTAAC+CGG - chr4_4:43066958-43066977 None:intergenic 45.0%
! GCAACGGATTCAACTAGTCT+AGG - chr4_4:43067026-43067045 None:intergenic 45.0%
! TTGTGTGCCGGTAATCATAG+CGG + chr4_4:43067052-43067071 Msa0682070:CDS 45.0%
ATACCGTCCGCTATGATTAC+CGG - chr4_4:43067062-43067081 None:intergenic 45.0%
!! TAATCATAGCGGACGGTATC+CGG + chr4_4:43067063-43067082 Msa0682070:CDS 45.0%
GAGAAAGATGTTTGGAGGCT+GGG + chr4_4:43067137-43067156 Msa0682070:CDS 45.0%
GTAGTGCTTTCCTTGTACGT+GGG - chr4_4:43067223-43067242 None:intergenic 45.0%
AGTAGTGCTTTCCTTGTACG+TGG - chr4_4:43067224-43067243 None:intergenic 45.0%
!! GACACGTAATGGGTATGCAT+TGG + chr4_4:43067356-43067375 Msa0682070:exon 45.0%
CCTTCACTGTTCAAAAGCCA+CGG - chr4_4:43067403-43067422 None:intergenic 45.0%
! TTTTCCTTTTCCAAGCCGCA+CGG - chr4_4:43067609-43067628 None:intergenic 45.0%
TGCTTGGATATAGAGACGGA+GGG - chr4_4:43067810-43067829 None:intergenic 45.0%
!!! TCTTAATTTTTTATTTTTTT+TGG + chr4_4:43066305-43066324 Msa0682070:intron 5.0%
TGGTCTGGTGTGAAGAGAAG+TGG - chr4_4:43065125-43065144 None:intergenic 50.0%
GAACGTGCATGACCAATTGC+AGG - chr4_4:43065773-43065792 None:intergenic 50.0%
!! ACGGTTCCAGAAAGGGTACT+CGG - chr4_4:43065828-43065847 None:intergenic 50.0%
CTGTGCTACGGTTCCAGAAA+GGG - chr4_4:43065835-43065854 None:intergenic 50.0%
GGAAGCTACGAAGACATGGT+CGG - chr4_4:43065861-43065880 None:intergenic 50.0%
CATGGGAAGCTACGAAGACA+TGG - chr4_4:43065865-43065884 None:intergenic 50.0%
!!! CGGTTCTTGTTTTCACACCC+TGG + chr4_4:43065889-43065908 Msa0682070:CDS 50.0%
!!! TTGGGTTTTGAAGGAGGACG+TGG + chr4_4:43066004-43066023 Msa0682070:intron 50.0%
GAGGACGTGGCAATGAAAGA+TGG + chr4_4:43066017-43066036 Msa0682070:CDS 50.0%
GGACGTGGCAATGAAAGATG+GGG + chr4_4:43066019-43066038 Msa0682070:CDS 50.0%
GATACCACCGTTTGTTTCGC+CGG + chr4_4:43066127-43066146 Msa0682070:CDS 50.0%
TGAACGGACGGCGAGATATT+TGG + chr4_4:43066183-43066202 Msa0682070:CDS 50.0%
GAACGGACGGCGAGATATTT+GGG + chr4_4:43066184-43066203 Msa0682070:CDS 50.0%
GTCAGTTATTCCGGAACGGA+GGG + chr4_4:43066635-43066654 Msa0682070:intron 50.0%
GTCTCCGTAGGTAAAACCTC+CGG - chr4_4:43066926-43066945 None:intergenic 50.0%
CTACGGAGACATAGGTTTGC+CGG + chr4_4:43066936-43066955 Msa0682070:CDS 50.0%
CCAGTCAGAAATCGCACGTT+CGG + chr4_4:43066962-43066981 Msa0682070:CDS 50.0%
! AACTAGTCTAGGGCTCCATG+GGG - chr4_4:43067015-43067034 None:intergenic 50.0%
! CAACTAGTCTAGGGCTCCAT+GGG - chr4_4:43067016-43067035 None:intergenic 50.0%
! TCAACTAGTCTAGGGCTCCA+TGG - chr4_4:43067017-43067036 None:intergenic 50.0%
CGGCACACAACCTAATGCAA+CGG - chr4_4:43067042-43067061 None:intergenic 50.0%
! CGTTGCATTAGGTTGTGTGC+CGG + chr4_4:43067040-43067059 Msa0682070:CDS 50.0%
TGAAATCTCCGGCCAGTTCA+CGG - chr4_4:43067105-43067124 None:intergenic 50.0%
TGGCGGAGAAAGATGTTTGG+AGG + chr4_4:43067132-43067151 Msa0682070:CDS 50.0%
GGAGAAAGATGTTTGGAGGC+TGG + chr4_4:43067136-43067155 Msa0682070:CDS 50.0%
ATTTGTGGGACCCACGTACA+AGG + chr4_4:43067210-43067229 Msa0682070:CDS 50.0%
! CCGTGGCTTTTGAACAGTGA+AGG + chr4_4:43067400-43067419 Msa0682070:three_prime_UTR 50.0%
!! GCATTGATTCGATGTCCGTG+CGG + chr4_4:43067591-43067610 Msa0682070:three_prime_UTR 50.0%
GTGCTTGGATATAGAGACGG+AGG - chr4_4:43067811-43067830 None:intergenic 50.0%
TCTCCACCGAGTACCCTTTC+TGG + chr4_4:43065819-43065838 Msa0682070:CDS 55.0%
!! GTTCCAGAAAGGGTACTCGG+TGG - chr4_4:43065825-43065844 None:intergenic 55.0%
CCTGTGCTACGGTTCCAGAA+AGG - chr4_4:43065836-43065855 None:intergenic 55.0%
!! CCTTTCTGGAACCGTAGCAC+AGG + chr4_4:43065833-43065852 Msa0682070:CDS 55.0%
CATGGTCGGATCCTGTGCTA+CGG - chr4_4:43065847-43065866 None:intergenic 55.0%
CTTTCCGGCGAAACAAACGG+TGG - chr4_4:43066134-43066153 None:intergenic 55.0%
ATATCTCGCCGTCCGTTCAC+CGG - chr4_4:43066182-43066201 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr4_4:43066436-43066455 None:intergenic 55.0%
GGTCAGTTATTCCGGAACGG+AGG + chr4_4:43066634-43066653 Msa0682070:intron 55.0%
CGGCAAACCTATGTCTCCGT+AGG - chr4_4:43066938-43066957 None:intergenic 55.0%
CCGAACGTGCGATTTCTGAC+TGG - chr4_4:43066965-43066984 None:intergenic 55.0%
! GTGCCGGTAATCATAGCGGA+CGG + chr4_4:43067056-43067075 Msa0682070:CDS 55.0%
CAGTTCACGGCGGAGGAAAA+CGG - chr4_4:43067092-43067111 None:intergenic 55.0%
CTGGCCGGAGATTTCAGTCA+CGG + chr4_4:43067109-43067128 Msa0682070:CDS 55.0%
GCCACCGTGACTGAAATCTC+CGG - chr4_4:43067116-43067135 None:intergenic 55.0%
GGAGATTTCAGTCACGGTGG+CGG + chr4_4:43067115-43067134 Msa0682070:CDS 55.0%
!! CGGTGGCGGAGAAAGATGTT+TGG + chr4_4:43067129-43067148 Msa0682070:CDS 55.0%
TCCATGAAGGAGATGCCACG+TGG + chr4_4:43067258-43067277 Msa0682070:CDS 55.0%
AGAATGTAGGACCTGCCACG+TGG - chr4_4:43067276-43067295 None:intergenic 55.0%
! ATGTCCGTGCGGCTTGGAAA+AGG + chr4_4:43067602-43067621 Msa0682070:three_prime_UTR 55.0%
CGGCGGAGGAAAACGGTAAC+CGG - chr4_4:43067085-43067104 None:intergenic 60.0%
! CGTTTTCCTCCGCCGTGAAC+TGG + chr4_4:43067090-43067109 Msa0682070:CDS 60.0%
AATCTCCGGCCAGTTCACGG+CGG - chr4_4:43067102-43067121 None:intergenic 60.0%
GCCGGAGATTTCAGTCACGG+TGG + chr4_4:43067112-43067131 Msa0682070:CDS 60.0%
GCCACGTGGCATCTCCTTCA+TGG - chr4_4:43067262-43067281 None:intergenic 60.0%
TGAAGGAGATGCCACGTGGC+AGG + chr4_4:43067262-43067281 Msa0682070:CDS 60.0%
GATTCGATGTCCGTGCGGCT+TGG + chr4_4:43067596-43067615 Msa0682070:three_prime_UTR 60.0%
TTCCTCCGCCGTGAACTGGC+CGG + chr4_4:43067094-43067113 Msa0682070:CDS 65.0%
!! GTCCTTTGGGGTGGGCCCCA+TGG + chr4_4:43066997-43067016 Msa0682070:CDS 70.0%
CTCCATGGGGCCCACCCCAA+AGG - chr4_4:43067002-43067021 None:intergenic 70.0%
CTCCGGCCAGTTCACGGCGG+AGG - chr4_4:43067099-43067118 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 43065044 43067887 43065044 ID=Msa0682070;Name=Msa0682070
chr4_4 mRNA 43065044 43067887 43065044 ID=Msa0682070-mRNA-1;Parent=Msa0682070;Name=Msa0682070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=186|1|1|1|1|1|3|523|470
chr4_4 exon 43065044 43065910 43065044 ID=Msa0682070-mRNA-1:exon:10378;Parent=Msa0682070-mRNA-1
chr4_4 exon 43066017 43066267 43066017 ID=Msa0682070-mRNA-1:exon:10379;Parent=Msa0682070-mRNA-1
chr4_4 exon 43066884 43067887 43066884 ID=Msa0682070-mRNA-1:exon:10380;Parent=Msa0682070-mRNA-1
chr4_4 five_prime_UTR 43065044 43065229 43065044 ID=Msa0682070-mRNA-1:five_prime_utr;Parent=Msa0682070-mRNA-1
chr4_4 CDS 43065230 43065910 43065230 ID=Msa0682070-mRNA-1:cds;Parent=Msa0682070-mRNA-1
chr4_4 CDS 43066017 43066267 43066017 ID=Msa0682070-mRNA-1:cds;Parent=Msa0682070-mRNA-1
chr4_4 CDS 43066884 43067364 43066884 ID=Msa0682070-mRNA-1:cds;Parent=Msa0682070-mRNA-1
chr4_4 three_prime_UTR 43067365 43067887 43067365 ID=Msa0682070-mRNA-1:three_prime_utr;Parent=Msa0682070-mRNA-1
Gene Sequence

>Msa0682070

ATGGATCAGAATCATAAGAAAAAACCCTCAAAAAACAAAGGATACTATGTTAAAATGAAACTCATGCATAAACATGGTATTAGACCTCAACAACAAGAAAAAAACCATTTTCATAAATATTACAAATGGATTCTTTGGCTTTCTCTTTCTCTCTATTTCTTCACTTCTTATCTCATCAGCAACAACAACAATCACAACCACAACAACAACAATAACATAAAACATCATCAAATAACATCAACAACCCATATCATAAAATCACTTTCTCAATCCTTATCCATCAAAAAAACAACATCATCACCTCAAAAACTTCAAAAAACTAGTTTAAAAAACTTGAAAATATTTGTGTATGATCTTCCACCAAAATACAACAAAGACTGGCTTAAAAACCCAAGATGCAAAAATCATTTATTTGCTTCAGAAGTTGCTATTCATAGAGCTTTATTAACAAGTGATGTTAGAACTTTTGACCCTTATGAAGCTGATTTCTTCTTTGTACCAGTTTACGTTTCATGTAACTTCAGCACAGTTAATGGCTTCCCTGCAATTGGTCATGCACGTTCATTGATTTCTTCAGCAGTGAGACTCATCTCCACCGAGTACCCTTTCTGGAACCGTAGCACAGGATCCGACCATGTCTTCGTAGCTTCCCATGATTTCGGTTCTTGTTTTCACACCCTGGAGGACGTGGCAATGAAAGATGGGGTACCTGAAATTATGAAGAATTCAATTGTGTTACAAACGTTTGGTGTTACATATGATCATCCATGTCAGAAAGTTGAACATGTTGTGATACCACCGTTTGTTTCGCCGGAAAGTGTACGGAATACGATGGAGAATTTTCCGGTGAACGGACGGCGAGATATTTGGGTTTTCTTTCGTGGGAAAATGGAGGTTCATCCTAAGAACGTTAGTGGAAGATTTTACAGCAAGAAAGTGAGAACAGTGATATGGAAAAATTTCAACAATGACCGGAGGTTTTACCTACGGAGACATAGGTTTGCCGGTTACCAGTCAGAAATCGCACGTTCGGTGTTTTGTTTATGTCCTTTGGGGTGGGCCCCATGGAGCCCTAGACTAGTTGAATCCGTTGCATTAGGTTGTGTGCCGGTAATCATAGCGGACGGTATCCGGTTACCGTTTTCCTCCGCCGTGAACTGGCCGGAGATTTCAGTCACGGTGGCGGAGAAAGATGTTTGGAGGCTGGGTGAGATATTAGAAAAAGTGGCTGCTACAAACCTTAGCATTATTCAAAGGAATTTGTGGGACCCACGTACAAGGAAAGCACTACTTTTCAATAGTAGGGTCCATGAAGGAGATGCCACGTGGCAGGTCCTACATTCTTTGAGTGAAAAGGTGGATAGGTCTTATAGGAGTTCAAGGGTTTCACGCCAATTACAATTTGACACGTAA
Protein sequence

>Msa0682070

MDQNHKKKPSKNKGYYVKMKLMHKHGIRPQQQEKNHFHKYYKWILWLSLSLYFFTSYLISNNNNHNHNNNNNIKHHQITSTTHIIKSLSQSLSIKKTTSSPQKLQKTSLKNLKIFVYDLPPKYNKDWLKNPRCKNHLFASEVAIHRALLTSDVRTFDPYEADFFFVPVYVSCNFSTVNGFPAIGHARSLISSAVRLISTEYPFWNRSTGSDHVFVASHDFGSCFHTLEDVAMKDGVPEIMKNSIVLQTFGVTYDHPCQKVEHVVIPPFVSPESVRNTMENFPVNGRRDIWVFFRGKMEVHPKNVSGRFYSKKVRTVIWKNFNNDRRFYLRRHRFAGYQSEIARSVFCLCPLGWAPWSPRLVESVALGCVPVIIADGIRLPFSSAVNWPEISVTVAEKDVWRLGEILEKVAATNLSIIQRNLWDPRTRKALLFNSRVHEGDATWQVLHSLSEKVDRSYRSSRVSRQLQFDT*