AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002490 MtrunA17_Chr2g0332091 90.270 370 31 1 1 370 1 365 0.0 684
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002490 AT1G80420.2 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0002490 AT1G80420.3 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0002490 AT1G80420.5 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0002490 AT1G80420.1 51.872 374 145 10 1 364 1 349 9.09e-117 343
Msa0002490 AT1G80420.4 50.949 369 144 9 1 364 1 337 1.96e-110 327

Find 93 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGGTCACGGAAATTT+TGG 0.168059 1_1:-4373851 Msa0002490:CDS
TGTCGAAACTTGGGAGTATT+TGG 0.171012 1_1:+4373138 None:intergenic
TGTTGAGGAGCTTGCAAAAT+TGG 0.254184 1_1:-4369987 Msa0002490:CDS
CTTCTTCTTGTTCTTTGTTT+CGG 0.263701 1_1:+4374183 None:intergenic
GGTGAGAAATCCAGTGAAAT+TGG 0.267428 1_1:-4373803 Msa0002490:CDS
TAGTTTGGTTTGCACAATTT+TGG 0.268602 1_1:-4369647 Msa0002490:three_prime_UTR
TTCGGCGCTGTGTTTGATTT+TGG 0.271414 1_1:+4374201 None:intergenic
CTGATTGAACTGGTTTGTTT+AGG 0.274195 1_1:-4369683 Msa0002490:three_prime_UTR
TTTACGAGGAAGAACTAAAT+AGG 0.286647 1_1:-4369892 Msa0002490:CDS
GAACTCTAATTGCACTCTTT+TGG 0.288941 1_1:-4373172 Msa0002490:CDS
TTCTGACTTCAACAAGCTTA+TGG 0.294131 1_1:-4373732 Msa0002490:intron
TGTATGCAGTGTATTGTCTT+AGG 0.324617 1_1:+4369615 None:intergenic
AGCTTCAACTTGTCGAAACT+TGG 0.336320 1_1:+4373128 None:intergenic
TTGAACTTTGGTCTTCTTGT+TGG 0.338177 1_1:+4373775 None:intergenic
GGGATGAAAAGTAGTTAGTT+TGG 0.339333 1_1:-4369662 Msa0002490:three_prime_UTR
ACAAATGCTGCATCTTCTTC+TGG 0.343819 1_1:-4369806 Msa0002490:CDS
TGATTGAACTGGTTTGTTTA+GGG 0.350215 1_1:-4369682 Msa0002490:three_prime_UTR
TTTGTTATCTCACTTGGATC+TGG 0.354921 1_1:+4370937 None:intergenic
GTGCACAAGTCCGAAAATTC+AGG 0.376157 1_1:+4369451 None:intergenic
ATATCTTCCTTTGACATTGA+AGG 0.399325 1_1:+4369944 None:intergenic
TGCAGTCCAGTGCTAGTTTG+TGG 0.400514 1_1:+4369921 None:intergenic
ATGGAAGTAGTCTCCTTTGA+AGG 0.419702 1_1:+4371462 None:intergenic
GAGGTCGCGTGCTATGGAAA+TGG 0.420876 1_1:-4373217 Msa0002490:CDS
GTTGGAAAGTCAAGAAGAAA+AGG 0.430535 1_1:-4371241 Msa0002490:intron
TTAAATTTAACCAGGACATT+GGG 0.434931 1_1:-4370045 Msa0002490:intron
CCATGATGGAAGGTTTCTCT+TGG 0.438435 1_1:+4373889 None:intergenic
CAATTTCAACGAGTTTCCTC+TGG 0.440206 1_1:+4372154 None:intergenic
GAATAAAACAATTCAGTGGT+TGG 0.443870 1_1:-4371259 Msa0002490:CDS
CATCTTGAGGTCGCGTGCTA+TGG 0.453790 1_1:-4373223 Msa0002490:CDS
GTTAAATTTAACCAGGACAT+TGG 0.458466 1_1:-4370046 Msa0002490:intron
TGGGTGTTAGGATTGGATGC+AGG 0.459523 1_1:-4372187 Msa0002490:intron
CGACAAGTTGAAGCTGATTG+TGG 0.469462 1_1:-4373120 Msa0002490:CDS
TCACAGGTGACACATCTTAG+AGG 0.470456 1_1:+4369709 None:intergenic
TCACCACCTTCATCCAAAGT+TGG 0.472003 1_1:+4373821 None:intergenic
GATAGTTACCTTATGCATGC+TGG 0.472246 1_1:-4372132 Msa0002490:CDS
GAAGGCTCAAAGCATTTCCT+AGG 0.473486 1_1:+4371312 None:intergenic
AAAGTTCAAAATGAAAATGC+TGG 0.480138 1_1:-4373761 Msa0002490:CDS
AGGTCGCGTGCTATGGAAAT+GGG 0.481408 1_1:-4373216 Msa0002490:CDS
GTGAGAAATCCAGTGAAATT+GGG 0.485864 1_1:-4373802 Msa0002490:CDS
AACAGACTAATCAACCAAAC+AGG 0.486202 1_1:-4374160 Msa0002490:intron
GTTGGAAGACCCAATTTCAC+TGG 0.493771 1_1:+4373793 None:intergenic
ATGGTTTCCCAGCATGCATA+AGG 0.493889 1_1:+4372124 None:intergenic
CCTGTGAATGCTGATTGAAC+TGG 0.494727 1_1:-4369693 Msa0002490:exon
TTGTGGAACCATTGTATCAA+AGG 0.498296 1_1:-4373103 Msa0002490:intron
TGTGGTTTGTGGGGTACAGA+TGG 0.499919 1_1:+4371504 None:intergenic
GAAAAGACATTGACGATCCT+AGG 0.500018 1_1:-4371329 Msa0002490:CDS
AAACCACAAAAGCATGTTGA+AGG 0.502946 1_1:-4371489 Msa0002490:CDS
GCCCACTTCTTCACTTCAGA+AGG 0.503953 1_1:+4371294 None:intergenic
ATAGTTACCTTATGCATGCT+GGG 0.506945 1_1:-4372131 Msa0002490:CDS
GACCTCAAGATGCCACGCTC+CGG 0.520624 1_1:+4373234 None:intergenic
AAGACAATACACTGCATACA+AGG 0.522180 1_1:-4369612 Msa0002490:three_prime_UTR
AGATATCCACAAACTAGCAC+TGG 0.527248 1_1:-4369927 Msa0002490:CDS
ATTCTTACCTCGAGTTGTTG+AGG 0.540660 1_1:-4370002 Msa0002490:CDS
ATCCGGAGCGTGGCATCTTG+AGG 0.545472 1_1:-4373236 Msa0002490:CDS
CAAAGATAAATGAAGAACAT+AGG 0.545893 1_1:-4369844 Msa0002490:CDS
GAGCAGAGTATAAGCAGGAC+TGG 0.547595 1_1:-4373194 Msa0002490:CDS
GCTGGGAAACCATGGCGTAA+AGG 0.547805 1_1:-4372114 Msa0002490:CDS
TTGAAGTCATCCATGATGGA+AGG 0.549060 1_1:+4373879 None:intergenic
GCTTCAACTTGTCGAAACTT+GGG 0.550803 1_1:+4373129 None:intergenic
CCAAGAGAAACCTTCCATCA+TGG 0.554767 1_1:-4373889 Msa0002490:CDS
AAGAGACCAACTTTGGATGA+AGG 0.555473 1_1:-4373827 Msa0002490:CDS
AGCCTTCTGAAGTGAAGAAG+TGG 0.556085 1_1:-4371296 Msa0002490:CDS
GATCTACCTCCTTTACGCCA+TGG 0.556671 1_1:+4372105 None:intergenic
CAATAAACCTTCAATGTCAA+AGG 0.558692 1_1:-4369951 Msa0002490:CDS
CTTGCAAAATTGGATGTTGT+GGG 0.560366 1_1:-4369977 Msa0002490:CDS
CAAAGCAGACGTGAGCTGCA+AGG 0.568223 1_1:+4369530 None:intergenic
GCTTGCAAAATTGGATGTTG+TGG 0.569859 1_1:-4369978 Msa0002490:CDS
AGAGGCAAGTCTCATAGACC+TGG 0.570930 1_1:+4369588 None:intergenic
TTGGGAGAGTAACTGAGGAC+TGG 0.572129 1_1:-4370027 Msa0002490:CDS
AGGATAAAGTCTTATATGCA+AGG 0.572773 1_1:+4369729 None:intergenic
TGTTGAAGGAGAGCCTTCAA+AGG 0.574537 1_1:-4371475 Msa0002490:CDS
GACTACTTCCATAAAATCAA+AGG 0.576252 1_1:-4371451 Msa0002490:intron
ATGACTTCAAAAGAAGATGA+TGG 0.581741 1_1:-4373866 Msa0002490:CDS
CCAGTTCAATCAGCATTCAC+AGG 0.584788 1_1:+4369693 None:intergenic
TGATGATACAATCGAGATGA+CGG 0.585128 1_1:-4369765 Msa0002490:CDS
TCCGAACCAGGTGTGGAGGG+TGG 0.587826 1_1:+4369370 None:intergenic
ATTTGAATAAAACAATTCAG+TGG 0.592039 1_1:-4371263 Msa0002490:CDS
GCCTTCTGAAGTGAAGAAGT+GGG 0.595508 1_1:-4371295 Msa0002490:CDS
ATACACTGCATACAAGGCCC+AGG 0.601757 1_1:-4369606 Msa0002490:three_prime_UTR
AGATCACATGAAGTCAATGA+AGG 0.603097 1_1:-4372087 Msa0002490:intron
AATGGGAGCAGAGTATAAGC+AGG 0.603134 1_1:-4373199 Msa0002490:CDS
TGCAGGAGTGTTACAGCCAG+AGG 0.610409 1_1:-4372170 Msa0002490:CDS
GCAAGCTCCTCAACAACTCG+AGG 0.615189 1_1:+4369995 None:intergenic
TATATAATGAATTGTTGTGA+AGG 0.616376 1_1:+4374224 None:intergenic
TTATGCATGCTGGGAAACCA+TGG 0.623179 1_1:-4372122 Msa0002490:CDS
TCAAAAGAAGATGATGGTCA+CGG 0.624811 1_1:-4373860 Msa0002490:CDS
GGGAAACCATGGCGTAAAGG+AGG 0.628797 1_1:-4372111 Msa0002490:CDS
AGATGCCATATGTTCTCTCG+AGG 0.652619 1_1:-4370881 Msa0002490:CDS
AGACCAACTTTGGATGAAGG+TGG 0.656003 1_1:-4373824 Msa0002490:CDS
GAGGCAAGTCTCATAGACCT+GGG 0.665165 1_1:+4369589 None:intergenic
GTGAGCTGCAAGGCTAACAA+AGG 0.669542 1_1:+4369540 None:intergenic
GGACATTGGGAGAGTAACTG+AGG 0.703411 1_1:-4370032 Msa0002490:CDS
GGACTGCAAATGTATTTACG+AGG 0.711362 1_1:-4369906 Msa0002490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATAATTTGAGAAAAA+TGG - chr1_1:4372212-4372231 Msa0002490:intron 10.0%
!!! ATTTTTTTAACAAATGAATT+TGG + chr1_1:4372522-4372541 None:intergenic 10.0%
!! TAATTGATTAAGTTTATGTT+TGG - chr1_1:4369905-4369924 Msa0002490:CDS 15.0%
!!! TAGTTTCAATTTTAATTCTA+CGG + chr1_1:4370821-4370840 None:intergenic 15.0%
!!! AAAGAAAAAAATGTTGTTTT+TGG - chr1_1:4371784-4371803 Msa0002490:intron 15.0%
!! CACTTATTTATATATATCTT+TGG + chr1_1:4371949-4371968 None:intergenic 15.0%
!!! AAAAAGTTAATTTTAAACAG+AGG + chr1_1:4374047-4374066 None:intergenic 15.0%
!!! TTTTTTTTGTACTTAACTTT+GGG - chr1_1:4374133-4374152 Msa0002490:intron 15.0%
!! TATATAATGAATTGTTGTGA+AGG + chr1_1:4369393-4369412 None:intergenic 20.0%
!! TGAATAAAAAAAAACCTGTT+TGG + chr1_1:4369471-4369490 None:intergenic 20.0%
!! AGGTTATTAATTCATTAAAC+TGG - chr1_1:4370310-4370329 Msa0002490:intron 20.0%
!!! TAATTCATTAAACTGGTTTA+TGG - chr1_1:4370317-4370336 Msa0002490:intron 20.0%
!!! AATATAAGCAGTACTTTTAA+AGG + chr1_1:4370587-4370606 None:intergenic 20.0%
!!! TAAAAGTACTGCTTATATTT+TGG - chr1_1:4370588-4370607 Msa0002490:intron 20.0%
!!! AGTTTCAATTTTAATTCTAC+GGG + chr1_1:4370820-4370839 None:intergenic 20.0%
!!! TATAATCTCATTTTTCTTTG+TGG - chr1_1:4370896-4370915 Msa0002490:CDS 20.0%
!!! TGCTGTTTTTTTACTAATAT+TGG - chr1_1:4371246-4371265 Msa0002490:CDS 20.0%
!!! TGTTTTTTTACTAATATTGG+TGG - chr1_1:4371249-4371268 Msa0002490:CDS 20.0%
!!! GTTTTTGTTGACAAAATATA+TGG + chr1_1:4371378-4371397 None:intergenic 20.0%
!!! TGTATCCTTTATTTTGTTTT+TGG - chr1_1:4371407-4371426 Msa0002490:intron 20.0%
!!! GTATCCTTTATTTTGTTTTT+GGG - chr1_1:4371408-4371427 Msa0002490:intron 20.0%
!! AATGTACAATAACTTAAACT+AGG + chr1_1:4371587-4371606 None:intergenic 20.0%
!!! TCAATATATTTTGCAGATAA+TGG + chr1_1:4371843-4371862 None:intergenic 20.0%
!!! AAAGGTCTTTAAGTAATTTT+AGG + chr1_1:4371887-4371906 None:intergenic 20.0%
!!! AAGTTTTAAACACACAAAAA+AGG + chr1_1:4371905-4371924 None:intergenic 20.0%
!! TAAATAAGTGCAAAATTGTA+AGG - chr1_1:4371959-4371978 Msa0002490:intron 20.0%
!! AAATAAGTGCAAAATTGTAA+GGG - chr1_1:4371960-4371979 Msa0002490:intron 20.0%
!!! AACTTTTACCTTTGATTTTA+TGG + chr1_1:4372174-4372193 None:intergenic 20.0%
!! ATAAAATCAAAGGTAAAAGT+TGG - chr1_1:4372173-4372192 Msa0002490:CDS 20.0%
!! ACAATCGACAAATAAAATAA+AGG + chr1_1:4372248-4372267 None:intergenic 20.0%
!! ATTTGAATAAAACAATTCAG+TGG - chr1_1:4372351-4372370 Msa0002490:intron 20.0%
!!! TTGAGAATTTAGTTTTACAT+AGG + chr1_1:4372644-4372663 None:intergenic 20.0%
!!! ATTTAATCATTTTCTTTTCC+TGG - chr1_1:4372817-4372836 Msa0002490:intron 20.0%
!!! TTTAATCATTTTCTTTTCCT+GGG - chr1_1:4372818-4372837 Msa0002490:intron 20.0%
!!! TATTTTACTTGAATGAGAAT+TGG - chr1_1:4373280-4373299 Msa0002490:intron 20.0%
!!! CTTTTTTTTGTACTTAACTT+TGG - chr1_1:4374132-4374151 Msa0002490:intron 20.0%
!! AGCATTTTCATTTTGAACTT+TGG + chr1_1:4369854-4369873 None:intergenic 25.0%
! AAAGTTCAAAATGAAAATGC+TGG - chr1_1:4369853-4369872 Msa0002490:CDS 25.0%
! TAAGTTTATGTTTGGTATCA+CGG - chr1_1:4369913-4369932 Msa0002490:CDS 25.0%
!! TTGTAGCTTTTACAAAATCA+CGG + chr1_1:4370037-4370056 None:intergenic 25.0%
! CATGTAACAAGTTAAAAGAA+AGG + chr1_1:4370543-4370562 None:intergenic 25.0%
!!! TTTAACTTGTTACATGTGAA+TGG - chr1_1:4370547-4370566 Msa0002490:intron 25.0%
! ATCTATGTCTTATACTTCTT+AGG - chr1_1:4370645-4370664 Msa0002490:intron 25.0%
! GAATAACAAACCATACAATA+GGG + chr1_1:4370674-4370693 None:intergenic 25.0%
! AGAATAACAAACCATACAAT+AGG + chr1_1:4370675-4370694 None:intergenic 25.0%
!!! GTCATTTTATTAATGTCTCA+TGG - chr1_1:4370733-4370752 Msa0002490:intron 25.0%
!! AAATTAGGGATATTTTGTCT+TGG - chr1_1:4371071-4371090 Msa0002490:intron 25.0%
! GTTAGAAAAGAAAAGAACAA+CGG + chr1_1:4371148-4371167 None:intergenic 25.0%
! ACAAAATAAAGGATACATCA+TGG + chr1_1:4371404-4371423 None:intergenic 25.0%
! AACACCCAAAAACAAAATAA+AGG + chr1_1:4371415-4371434 None:intergenic 25.0%
!!! TTATTTTGTTTTTGGGTGTT+AGG - chr1_1:4371415-4371434 Msa0002490:intron 25.0%
! TTGTATGCTAGTAAATTGAT+AGG - chr1_1:4371560-4371579 Msa0002490:intron 25.0%
! TGTTATATACGAAATGATTG+AGG + chr1_1:4371631-4371650 None:intergenic 25.0%
!!! TCTTTTCTCTCTTATTTTTC+TGG - chr1_1:4371742-4371761 Msa0002490:intron 25.0%
!! TATATCTTTGGTGATAAAGA+TGG + chr1_1:4371937-4371956 None:intergenic 25.0%
!! TTCTAACTTCATTTTGTTCA+AGG - chr1_1:4372605-4372624 Msa0002490:intron 25.0%
! AAAACTAAAATCTACATGCA+AGG + chr1_1:4372867-4372886 None:intergenic 25.0%
! GTTGTAAAAATTAAGTGCAA+AGG + chr1_1:4373183-4373202 None:intergenic 25.0%
!! TTGCACTTAATTTTTACAAC+AGG - chr1_1:4373183-4373202 Msa0002490:CDS 25.0%
!! ACTTAATTTTTACAACAGGA+TGG - chr1_1:4373187-4373206 Msa0002490:CDS 25.0%
! TTCAAGTAAAATATCCAGTA+TGG + chr1_1:4373273-4373292 None:intergenic 25.0%
! TTGTACAGTCCATTTATATT+TGG - chr1_1:4373427-4373446 Msa0002490:intron 25.0%
! TGTGTAAAGCCAAATATAAA+TGG + chr1_1:4373439-4373458 None:intergenic 25.0%
! TTAAAGTAAGAATACCAAGA+TGG + chr1_1:4373477-4373496 None:intergenic 25.0%
!! TCTTACTTTAAGTTTCAATG+TGG - chr1_1:4373486-4373505 Msa0002490:intron 25.0%
!! CTTACTTTAAGTTTCAATGT+GGG - chr1_1:4373487-4373506 Msa0002490:intron 25.0%
!! TTACTTTAAGTTTCAATGTG+GGG - chr1_1:4373488-4373507 Msa0002490:intron 25.0%
! CTGTTATATCAAGGATTAAA+TGG - chr1_1:4373511-4373530 Msa0002490:intron 25.0%
!! TTGTCTTGTTAAATTTAACC+AGG - chr1_1:4373561-4373580 Msa0002490:intron 25.0%
! TTAAATTTAACCAGGACATT+GGG - chr1_1:4373569-4373588 Msa0002490:intron 25.0%
! CAAAGATAAATGAAGAACAT+AGG - chr1_1:4373770-4373789 Msa0002490:CDS 25.0%
! CTTCTTCTTGTTCTTTGTTT+CGG + chr1_1:4369434-4369453 None:intergenic 30.0%
ACTACAAAAACCTGCATTTA+GGG + chr1_1:4369639-4369658 None:intergenic 30.0%
!! ACTTGGGTGTTTTTCAAAAT+TGG - chr1_1:4369662-4369681 Msa0002490:three_prime_UTR 30.0%
ATGACTTCAAAAGAAGATGA+TGG - chr1_1:4369748-4369767 Msa0002490:CDS 30.0%
! CTGTACCTTTTACAAAATCA+CGG + chr1_1:4370092-4370111 None:intergenic 30.0%
GTTTCTTATTAGTGCATGTT+TGG + chr1_1:4370239-4370258 None:intergenic 30.0%
!! GTTTGCATTGTTGTTTAATG+AGG - chr1_1:4370290-4370309 Msa0002490:intron 30.0%
GGAAAAAACCTTTGATACAA+TGG + chr1_1:4370522-4370541 None:intergenic 30.0%
!! GTACTGCTTATATTTTGGAA+AGG - chr1_1:4370593-4370612 Msa0002490:intron 30.0%
!! TATTTTGGAAAGGATAGAAG+TGG - chr1_1:4370603-4370622 Msa0002490:intron 30.0%
GTATAAGACATAGATTCTTG+AGG + chr1_1:4370640-4370659 None:intergenic 30.0%
!! TTTGTTATTCTCACTACTTG+TGG - chr1_1:4370684-4370703 Msa0002490:intron 30.0%
! AGAGATTAGTTGAGACATAA+TGG - chr1_1:4371028-4371047 Msa0002490:intron 30.0%
TTTCCTCAATGAAGGAAATT+AGG - chr1_1:4371056-4371075 Msa0002490:intron 30.0%
TTCCTCAATGAAGGAAATTA+GGG - chr1_1:4371057-4371076 Msa0002490:intron 30.0%
! AGACATTAAGTTTTTGCTTG+AGG - chr1_1:4371103-4371122 Msa0002490:intron 30.0%
! TTAAGTTTTTGCTTGAGGAA+AGG - chr1_1:4371108-4371127 Msa0002490:intron 30.0%
GTCTGGATTATGTAACAAAT+AGG + chr1_1:4371224-4371243 None:intergenic 30.0%
!!! GCTTACCACTTTTTAGATTT+TGG - chr1_1:4371306-4371325 Msa0002490:CDS 30.0%
!!! TACCACTTTTTAGATTTTGG+TGG - chr1_1:4371309-4371328 Msa0002490:CDS 30.0%
!!! ACCACTTTTTAGATTTTGGT+GGG - chr1_1:4371310-4371329 Msa0002490:CDS 30.0%
!!! TAGTAACGTTACACTGATTT+TGG - chr1_1:4371340-4371359 Msa0002490:intron 30.0%
GGAAATATTAGATGTGAAAC+TGG + chr1_1:4372057-4372076 None:intergenic 30.0%
GACTACTTCCATAAAATCAA+AGG - chr1_1:4372163-4372182 Msa0002490:CDS 30.0%
! ATTGTTTGCTACATATTCCA+GGG - chr1_1:4372263-4372282 Msa0002490:intron 30.0%
GAATAAAACAATTCAGTGGT+TGG - chr1_1:4372355-4372374 Msa0002490:intron 30.0%
! AATGTTTCTGTTCATTCTAG+AGG - chr1_1:4372423-4372442 Msa0002490:intron 30.0%
!! TGCTTCTAAAGCATTTATCA+CGG + chr1_1:4372571-4372590 None:intergenic 30.0%
!! TGATAAATGCTTTAGAAGCA+AGG - chr1_1:4372571-4372590 Msa0002490:intron 30.0%
!!! GCTATTTTTGTTATCTCACT+TGG + chr1_1:4372686-4372705 None:intergenic 30.0%
ATAACAAAAATAGCTGCAGA+AGG - chr1_1:4372692-4372711 Msa0002490:intron 30.0%
TAACAAAAATAGCTGCAGAA+GGG - chr1_1:4372693-4372712 Msa0002490:intron 30.0%
! AAACTGATTGTGACTTGTAT+TGG - chr1_1:4372780-4372799 Msa0002490:intron 30.0%
ATCAGACTAATAATAGATGC+AGG - chr1_1:4372923-4372942 Msa0002490:intron 30.0%
TCAGACTAATAATAGATGCA+GGG - chr1_1:4372924-4372943 Msa0002490:intron 30.0%
AATACATTCCCAAGAAAGAT+AGG + chr1_1:4373011-4373030 None:intergenic 30.0%
! TTCTGGAGAAAACTATGTTA+GGG + chr1_1:4373160-4373179 None:intergenic 30.0%
AAAATTAAGTGCAAAGGTTC+TGG + chr1_1:4373177-4373196 None:intergenic 30.0%
TATAATTAGTCGGCATCATT+AGG + chr1_1:4373234-4373253 None:intergenic 30.0%
! AATGATGCCGACTAATTATA+AGG - chr1_1:4373234-4373253 Msa0002490:CDS 30.0%
ATGAGAATTGGCAAATCATT+TGG - chr1_1:4373292-4373311 Msa0002490:intron 30.0%
GACATTGAAGGATATCTTAA+TGG + chr1_1:4373348-4373367 None:intergenic 30.0%
GTTAAATTTAACCAGGACAT+TGG - chr1_1:4373568-4373587 Msa0002490:intron 30.0%
CAATAAACCTTCAATGTCAA+AGG - chr1_1:4373663-4373682 Msa0002490:intron 30.0%
ATATCTTCCTTTGACATTGA+AGG + chr1_1:4373673-4373692 None:intergenic 30.0%
TTTACGAGGAAGAACTAAAT+AGG - chr1_1:4373722-4373741 Msa0002490:intron 30.0%
! AGGATAAAGTCTTATATGCA+AGG + chr1_1:4373888-4373907 None:intergenic 30.0%
!! TGATTGAACTGGTTTGTTTA+GGG - chr1_1:4373932-4373951 Msa0002490:five_prime_UTR 30.0%
!!! TAGTTTGGTTTGCACAATTT+TGG - chr1_1:4373967-4373986 Msa0002490:five_prime_UTR 30.0%
! TTTTTGTACTTAACTTTGGG+AGG - chr1_1:4374136-4374155 Msa0002490:intron 30.0%
AACAGACTAATCAACCAAAC+AGG - chr1_1:4369454-4369473 Msa0002490:three_prime_UTR 35.0%
TTTGAATGAACCCTAAATGC+AGG - chr1_1:4369626-4369645 Msa0002490:three_prime_UTR 35.0%
CACTACAAAAACCTGCATTT+AGG + chr1_1:4369640-4369659 None:intergenic 35.0%
! CTAAATGCAGGTTTTTGTAG+TGG - chr1_1:4369638-4369657 Msa0002490:three_prime_UTR 35.0%
!! AGGTTTTTGTAGTGGAACTT+GGG - chr1_1:4369646-4369665 Msa0002490:three_prime_UTR 35.0%
!!! TCTTTTGAAGTCATCCATGA+TGG + chr1_1:4369742-4369761 None:intergenic 35.0%
! TCAAAAGAAGATGATGGTCA+CGG - chr1_1:4369754-4369773 Msa0002490:CDS 35.0%
!! TTTTGGAAAGAGACCAACTT+TGG - chr1_1:4369780-4369799 Msa0002490:CDS 35.0%
GTGAGAAATCCAGTGAAATT+GGG - chr1_1:4369812-4369831 Msa0002490:CDS 35.0%
! TTGAACTTTGGTCTTCTTGT+TGG + chr1_1:4369842-4369861 None:intergenic 35.0%
TTCTGACTTCAACAAGCTTA+TGG - chr1_1:4369882-4369901 Msa0002490:CDS 35.0%
AAGCAGCTTTCGAAAAATCA+CGG + chr1_1:4369966-4369985 None:intergenic 35.0%
! TAGCTTTTACAAAATCACGG+TGG + chr1_1:4370034-4370053 None:intergenic 35.0%
TAAAAGCTACAATGCCAAAG+TGG - chr1_1:4370045-4370064 Msa0002490:intron 35.0%
! TGTCACCGTGATTTTGTAAA+AGG - chr1_1:4370084-4370103 Msa0002490:intron 35.0%
! ACGGAGCTTTTGTAAAATCA+GGG - chr1_1:4370178-4370197 Msa0002490:intron 35.0%
! AAGTAGCAGTTGTGTGTTTT+TGG - chr1_1:4370263-4370282 Msa0002490:intron 35.0%
! AGTAGCAGTTGTGTGTTTTT+GGG - chr1_1:4370264-4370283 Msa0002490:intron 35.0%
! CATTAAACTGGTTTATGGAC+AGG - chr1_1:4370322-4370341 Msa0002490:intron 35.0%
! GAACTCTAATTGCACTCTTT+TGG - chr1_1:4370442-4370461 Msa0002490:intron 35.0%
TTGTGGAACCATTGTATCAA+AGG - chr1_1:4370511-4370530 Msa0002490:intron 35.0%
TCTTAGGAATCCCTATTGTA+TGG - chr1_1:4370661-4370680 Msa0002490:intron 35.0%
! TATTAGCTGGTTCAAGTTTG+AGG + chr1_1:4370848-4370867 None:intergenic 35.0%
!! TAATAGCCAAGAAGGTACTA+GGG - chr1_1:4370863-4370882 Msa0002490:intron 35.0%
! TGGTTTTCTTTCCTCAATGA+AGG - chr1_1:4371048-4371067 Msa0002490:intron 35.0%
ATCCCTAATTTCCTTCATTG+AGG + chr1_1:4371062-4371081 None:intergenic 35.0%
AGTAAAAAAACAGCATCGTC+TGG + chr1_1:4371241-4371260 None:intergenic 35.0%
TCCCACCAAAATCTAAAAAG+TGG + chr1_1:4371314-4371333 None:intergenic 35.0%
!!! TTGTTTTTGGGTGTTAGGAT+TGG - chr1_1:4371420-4371439 Msa0002490:intron 35.0%
ATAGTTACCTTATGCATGCT+GGG - chr1_1:4371483-4371502 Msa0002490:CDS 35.0%
AGATCACATGAAGTCAATGA+AGG - chr1_1:4371527-4371546 Msa0002490:intron 35.0%
AGAAGCCAATTAAGATTGCA+TGG - chr1_1:4371668-4371687 Msa0002490:intron 35.0%
! ATCTAAGATGCAAGTCACAA+AGG + chr1_1:4371703-4371722 None:intergenic 35.0%
ACTCACGCATAAATTTCATG+AGG + chr1_1:4372078-4372097 None:intergenic 35.0%
!! AACATGCTTTTGTGGTTTGT+GGG + chr1_1:4372123-4372142 None:intergenic 35.0%
! AAACCACAAAAGCATGTTGA+AGG - chr1_1:4372125-4372144 Msa0002490:CDS 35.0%
! GATTGTTTGCTACATATTCC+AGG - chr1_1:4372262-4372281 Msa0002490:intron 35.0%
GTTGGAAAGTCAAGAAGAAA+AGG - chr1_1:4372373-4372392 Msa0002490:intron 35.0%
TAAGCTTTCAGAACTTGCAT+AGG - chr1_1:4372459-4372478 Msa0002490:intron 35.0%
! TTTGTTATCTCACTTGGATC+TGG + chr1_1:4372680-4372699 None:intergenic 35.0%
! TTTTTCCTCGAGAGAACATA+TGG + chr1_1:4372741-4372760 None:intergenic 35.0%
AGCAATTTGCCTATCTTTCT+TGG - chr1_1:4372999-4373018 Msa0002490:intron 35.0%
GCAATTTGCCTATCTTTCTT+GGG - chr1_1:4373000-4373019 Msa0002490:intron 35.0%
ATCCAAGTAGTAAGCAATAC+TGG + chr1_1:4373097-4373116 None:intergenic 35.0%
TGTTAGGGACAAAAAAAGCT+AGG + chr1_1:4373145-4373164 None:intergenic 35.0%
!! GTTCTGGAGAAAACTATGTT+AGG + chr1_1:4373161-4373180 None:intergenic 35.0%
! ACTCAGGCCTTATAATTAGT+CGG + chr1_1:4373244-4373263 None:intergenic 35.0%
CTTGCAAAATTGGATGTTGT+GGG - chr1_1:4373637-4373656 Msa0002490:intron 35.0%
GAAGAACATAGGAGCAAAAA+TGG - chr1_1:4373781-4373800 Msa0002490:CDS 35.0%
TGATGATACAATCGAGATGA+CGG - chr1_1:4373849-4373868 Msa0002490:CDS 35.0%
!! CTGATTGAACTGGTTTGTTT+AGG - chr1_1:4373931-4373950 Msa0002490:five_prime_UTR 35.0%
GGGATGAAAAGTAGTTAGTT+TGG - chr1_1:4373952-4373971 Msa0002490:five_prime_UTR 35.0%
TGTATGCAGTGTATTGTCTT+AGG + chr1_1:4374002-4374021 None:intergenic 35.0%
AAGACAATACACTGCATACA+AGG - chr1_1:4374002-4374021 Msa0002490:intron 35.0%
! GCGAGTACTAATTTTATCCA+CGG - chr1_1:4374106-4374125 Msa0002490:intron 35.0%
AGTACAAAAAAAAGAGTCCG+TGG + chr1_1:4374126-4374145 None:intergenic 35.0%
!! CAGGTTTTTGTAGTGGAACT+TGG - chr1_1:4369645-4369664 Msa0002490:three_prime_UTR 40.0%
! TTGAAGTCATCCATGATGGA+AGG + chr1_1:4369738-4369757 None:intergenic 40.0%
!! GATGATGGTCACGGAAATTT+TGG - chr1_1:4369763-4369782 Msa0002490:CDS 40.0%
AAGAGACCAACTTTGGATGA+AGG - chr1_1:4369787-4369806 Msa0002490:CDS 40.0%
GGTGAGAAATCCAGTGAAAT+TGG - chr1_1:4369811-4369830 Msa0002490:CDS 40.0%
TTAGTGCGTGTTTGGTATCA+TGG - chr1_1:4369984-4370003 Msa0002490:CDS 40.0%
AAAGTGGCTATGCGAAATCA+CGG - chr1_1:4370061-4370080 Msa0002490:intron 40.0%
TTTACAAAAGCTCCGTGCAT+TGG + chr1_1:4370174-4370193 None:intergenic 40.0%
! CACGGAGCTTTTGTAAAATC+AGG - chr1_1:4370177-4370196 Msa0002490:intron 40.0%
! GAGCTTTTGTAAAATCAGGG+TGG - chr1_1:4370181-4370200 Msa0002490:intron 40.0%
! AAACTGGTTTATGGACAGGA+AGG - chr1_1:4370326-4370345 Msa0002490:intron 40.0%
! AGGTGTAGTTTTTGTGCTGT+CGG - chr1_1:4370346-4370365 Msa0002490:intron 40.0%
!! TGTCGAAACTTGGGAGTATT+TGG + chr1_1:4370479-4370498 None:intergenic 40.0%
GCTTCAACTTGTCGAAACTT+GGG + chr1_1:4370488-4370507 None:intergenic 40.0%
AGCTTCAACTTGTCGAAACT+TGG + chr1_1:4370489-4370508 None:intergenic 40.0%
TTGGAAAGGATAGAAGTGGA+AGG - chr1_1:4370607-4370626 Msa0002490:intron 40.0%
!! CTAATAGCCAAGAAGGTACT+AGG - chr1_1:4370862-4370881 Msa0002490:intron 40.0%
! TAGCGTCAATTACTGACTGT+AGG - chr1_1:4370970-4370989 Msa0002490:intron 40.0%
! TGCTGTAGTGTCTTAGTTTG+CGG - chr1_1:4370997-4371016 Msa0002490:intron 40.0%
TAATCCAAGCCTTTCACTGA+GGG - chr1_1:4371194-4371213 Msa0002490:intron 40.0%
CAATTTCAACGAGTTTCCTC+TGG + chr1_1:4371463-4371482 None:intergenic 40.0%
GATAGTTACCTTATGCATGC+TGG - chr1_1:4371482-4371501 Msa0002490:CDS 40.0%
CAGCTCCATGCAATCTTAAT+TGG + chr1_1:4371676-4371695 None:intergenic 40.0%
!!! TGTTTTTGGAGCAGAATCAC+TGG - chr1_1:4371798-4371817 Msa0002490:intron 40.0%
!! ACATGCTTTTGTGGTTTGTG+GGG + chr1_1:4372122-4372141 None:intergenic 40.0%
! CAACATGCTTTTGTGGTTTG+TGG + chr1_1:4372124-4372143 None:intergenic 40.0%
! TCTCCTTCAACATGCTTTTG+TGG + chr1_1:4372131-4372150 None:intergenic 40.0%
ATGGAAGTAGTCTCCTTTGA+AGG + chr1_1:4372155-4372174 None:intergenic 40.0%
GAAAAGACATTGACGATCCT+AGG - chr1_1:4372285-4372304 Msa0002490:intron 40.0%
ATGTTCTCTCGAGGAAAAAC+AGG - chr1_1:4372742-4372761 Msa0002490:intron 40.0%
! TCATTTTCTTTTCCTGGGAG+TGG - chr1_1:4372823-4372842 Msa0002490:intron 40.0%
TTACTTATATTGCCACTCCC+AGG + chr1_1:4372838-4372857 None:intergenic 40.0%
CACCAGTATTGCTTACTACT+TGG - chr1_1:4373092-4373111 Msa0002490:intron 40.0%
AAGCTAGGATGGCAATGATT+AGG + chr1_1:4373130-4373149 None:intergenic 40.0%
AGGGACAAAAAAAGCTAGGA+TGG + chr1_1:4373141-4373160 None:intergenic 40.0%
TCCAGTATGGCTATATACTC+AGG + chr1_1:4373260-4373279 None:intergenic 40.0%
TGTCATTCAGTGTGATGACT+CGG + chr1_1:4373318-4373337 None:intergenic 40.0%
CCAATTGTCAACGACATTGA+AGG + chr1_1:4373360-4373379 None:intergenic 40.0%
CCTTCAATGTCGTTGACAAT+TGG - chr1_1:4373357-4373376 Msa0002490:intron 40.0%
GTAAGAATACCAAGATGGCA+CGG + chr1_1:4373472-4373491 None:intergenic 40.0%
AATGTGGGGCTGTTATATCA+AGG - chr1_1:4373502-4373521 Msa0002490:intron 40.0%
! ATTCTTACCTCGAGTTGTTG+AGG - chr1_1:4373612-4373631 Msa0002490:intron 40.0%
TGTTGAGGAGCTTGCAAAAT+TGG - chr1_1:4373627-4373646 Msa0002490:intron 40.0%
GCTTGCAAAATTGGATGTTG+TGG - chr1_1:4373636-4373655 Msa0002490:intron 40.0%
AGATATCCACAAACTAGCAC+TGG - chr1_1:4373687-4373706 Msa0002490:intron 40.0%
GGACTGCAAATGTATTTACG+AGG - chr1_1:4373708-4373727 Msa0002490:intron 40.0%
ACAAATGCTGCATCTTCTTC+TGG - chr1_1:4373808-4373827 Msa0002490:CDS 40.0%
!! TTCGGCGCTGTGTTTGATTT+TGG + chr1_1:4369416-4369435 None:intergenic 45.0%
! CCATGATGGAAGGTTTCTCT+TGG + chr1_1:4369728-4369747 None:intergenic 45.0%
CCAAGAGAAACCTTCCATCA+TGG - chr1_1:4369725-4369744 Msa0002490:CDS 45.0%
AGACCAACTTTGGATGAAGG+TGG - chr1_1:4369790-4369809 Msa0002490:CDS 45.0%
TCACCACCTTCATCCAAAGT+TGG + chr1_1:4369796-4369815 None:intergenic 45.0%
GTTGGAAGACCCAATTTCAC+TGG + chr1_1:4369824-4369843 None:intergenic 45.0%
ACGGTGGCTCAATGTGATTA+TGG + chr1_1:4369947-4369966 None:intergenic 45.0%
CAGCTTTCGAAAAATCACGG+TGG + chr1_1:4369963-4369982 None:intergenic 45.0%
AAAGCTGCTTAGTGCGTGTT+TGG - chr1_1:4369976-4369995 Msa0002490:CDS 45.0%
GTGATTTCGCATAGCCACTT+TGG + chr1_1:4370062-4370081 None:intergenic 45.0%
TGTAAAATCAGGGTGGTTCG+CGG - chr1_1:4370188-4370207 Msa0002490:intron 45.0%
! GGTGTAGTTTTTGTGCTGTC+GGG - chr1_1:4370347-4370366 Msa0002490:intron 45.0%
AATGGGAGCAGAGTATAAGC+AGG - chr1_1:4370415-4370434 Msa0002490:intron 45.0%
! CGACAAGTTGAAGCTGATTG+TGG - chr1_1:4370494-4370513 Msa0002490:intron 45.0%
TATTCTCACTACTTGTGGCG+TGG - chr1_1:4370689-4370708 Msa0002490:intron 45.0%
ATTCTCACTACTTGTGGCGT+GGG - chr1_1:4370690-4370709 Msa0002490:intron 45.0%
GAACCAGCTAATAGCCAAGA+AGG - chr1_1:4370855-4370874 Msa0002490:intron 45.0%
GTACCTTCTTGGCTATTAGC+TGG + chr1_1:4370861-4370880 None:intergenic 45.0%
!! TGTAGTGTCTTAGTTTGCGG+TGG - chr1_1:4371000-4371019 Msa0002490:intron 45.0%
CTAATCCAAGCCTTTCACTG+AGG - chr1_1:4371193-4371212 Msa0002490:intron 45.0%
AATCCAAGCCTTTCACTGAG+GGG - chr1_1:4371195-4371214 Msa0002490:intron 45.0%
ATAGGATTCCCCTCAGTGAA+AGG + chr1_1:4371206-4371225 None:intergenic 45.0%
ATGGTTTCCCAGCATGCATA+AGG + chr1_1:4371493-4371512 None:intergenic 45.0%
TTATGCATGCTGGGAAACCA+TGG - chr1_1:4371492-4371511 Msa0002490:CDS 45.0%
TGTTGAAGGAGAGCCTTCAA+AGG - chr1_1:4372139-4372158 Msa0002490:CDS 45.0%
! GATCGTCAATGTCTTTTCCC+TGG + chr1_1:4372283-4372302 None:intergenic 45.0%
! GAAGGCTCAAAGCATTTCCT+AGG + chr1_1:4372305-4372324 None:intergenic 45.0%
!! AGCCTTCTGAAGTGAAGAAG+TGG - chr1_1:4372318-4372337 Msa0002490:intron 45.0%
!! GCCTTCTGAAGTGAAGAAGT+GGG - chr1_1:4372319-4372338 Msa0002490:intron 45.0%
AGATGCCATATGTTCTCTCG+AGG - chr1_1:4372733-4372752 Msa0002490:intron 45.0%
GCCTGAGTATATAGCCATAC+TGG - chr1_1:4373256-4373275 Msa0002490:CDS 45.0%
TCACAGGTGACACATCTTAG+AGG + chr1_1:4373908-4373927 None:intergenic 45.0%
CCAGTTCAATCAGCATTCAC+AGG + chr1_1:4373924-4373943 None:intergenic 45.0%
! CCTGTGAATGCTGATTGAAC+TGG - chr1_1:4373921-4373940 Msa0002490:five_prime_UTR 45.0%
!!! GGGAGGAGTACCTGAATTTT+CGG - chr1_1:4374153-4374172 Msa0002490:intron 45.0%
GTGCACAAGTCCGAAAATTC+AGG + chr1_1:4374166-4374185 None:intergenic 45.0%
!!! ATTTTTCAAATATTATTTAT+TGG - chr1_1:4371277-4371296 Msa0002490:CDS 5.0%
! CCGTGCATTGGTATCATGGT+GGG + chr1_1:4370162-4370181 None:intergenic 50.0%
CCCACCATGATACCAATGCA+CGG - chr1_1:4370159-4370178 Msa0002490:intron 50.0%
! TCCGTGCATTGGTATCATGG+TGG + chr1_1:4370163-4370182 None:intergenic 50.0%
! AGCTCCGTGCATTGGTATCA+TGG + chr1_1:4370166-4370185 None:intergenic 50.0%
!! GCTGTCGGGTTTTGTGAATC+CGG - chr1_1:4370361-4370380 Msa0002490:intron 50.0%
AGGTCGCGTGCTATGGAAAT+GGG - chr1_1:4370398-4370417 Msa0002490:intron 50.0%
GAGCAGAGTATAAGCAGGAC+TGG - chr1_1:4370420-4370439 Msa0002490:intron 50.0%
GAGATGCCCTAGTACCTTCT+TGG + chr1_1:4370872-4370891 None:intergenic 50.0%
ATTCCCCTCAGTGAAAGGCT+TGG + chr1_1:4371201-4371220 None:intergenic 50.0%
TGGGTGTTAGGATTGGATGC+AGG - chr1_1:4371427-4371446 Msa0002490:intron 50.0%
GATCTACCTCCTTTACGCCA+TGG + chr1_1:4371512-4371531 None:intergenic 50.0%
GAGGTTGGCAAACATGCATG+TGG + chr1_1:4372005-4372024 None:intergenic 50.0%
GTGAAACTGGACCGAGACAA+CGG + chr1_1:4372044-4372063 None:intergenic 50.0%
! TGTGGTTTGTGGGGTACAGA+TGG + chr1_1:4372113-4372132 None:intergenic 50.0%
GCCCACTTCTTCACTTCAGA+AGG + chr1_1:4372323-4372342 None:intergenic 50.0%
CTCACTTGGATCTGGCTGAA+AGG + chr1_1:4372672-4372691 None:intergenic 50.0%
GTCTGAATTCCGTGCCATCT+TGG - chr1_1:4373460-4373479 Msa0002490:intron 50.0%
CAGTTACTCTCCCAATGTCC+TGG + chr1_1:4373582-4373601 None:intergenic 50.0%
GGACATTGGGAGAGTAACTG+AGG - chr1_1:4373582-4373601 Msa0002490:intron 50.0%
TTGGGAGAGTAACTGAGGAC+TGG - chr1_1:4373587-4373606 Msa0002490:intron 50.0%
! TGCAGTCCAGTGCTAGTTTG+TGG + chr1_1:4373696-4373715 None:intergenic 50.0%
ATACACTGCATACAAGGCCC+AGG - chr1_1:4374008-4374027 Msa0002490:intron 50.0%
GAGGCAAGTCTCATAGACCT+GGG + chr1_1:4374028-4374047 None:intergenic 50.0%
AGAGGCAAGTCTCATAGACC+TGG + chr1_1:4374029-4374048 None:intergenic 50.0%
GTGAGCTGCAAGGCTAACAA+AGG + chr1_1:4374077-4374096 None:intergenic 50.0%
AGGGTGGTTCGCGGTGATTT+GGG - chr1_1:4370197-4370216 Msa0002490:intron 55.0%
!! GGTTTTGTGAATCCGGAGCG+TGG - chr1_1:4370368-4370387 Msa0002490:intron 55.0%
CATCTTGAGGTCGCGTGCTA+TGG - chr1_1:4370391-4370410 Msa0002490:intron 55.0%
GAGGTCGCGTGCTATGGAAA+TGG - chr1_1:4370397-4370416 Msa0002490:intron 55.0%
!! TGCAGGAGTGTTACAGCCAG+AGG - chr1_1:4371444-4371463 Msa0002490:intron 55.0%
GCTGGGAAACCATGGCGTAA+AGG - chr1_1:4371500-4371519 Msa0002490:CDS 55.0%
GGGAAACCATGGCGTAAAGG+AGG - chr1_1:4371503-4371522 Msa0002490:CDS 55.0%
GAGACAACGGTGTGGGACTT+GGG + chr1_1:4372031-4372050 None:intergenic 55.0%
CAAGTCCCACACCGTTGTCT+CGG - chr1_1:4372030-4372049 Msa0002490:intron 55.0%
GCAAGCTCCTCAACAACTCG+AGG + chr1_1:4373622-4373641 None:intergenic 55.0%
CAAAGCAGACGTGAGCTGCA+AGG + chr1_1:4374087-4374106 None:intergenic 55.0%
CAGGGTGGTTCGCGGTGATT+TGG - chr1_1:4370196-4370215 Msa0002490:intron 60.0%
ATCCGGAGCGTGGCATCTTG+AGG - chr1_1:4370378-4370397 Msa0002490:intron 60.0%
GACCTCAAGATGCCACGCTC+CGG + chr1_1:4370383-4370402 None:intergenic 60.0%
GTGGGACTTGGGTAGGAGGT+TGG + chr1_1:4372020-4372039 None:intergenic 60.0%
CAACGGTGTGGGACTTGGGT+AGG + chr1_1:4372027-4372046 None:intergenic 60.0%
CGAGACAACGGTGTGGGACT+TGG + chr1_1:4372032-4372051 None:intergenic 60.0%
CTGGACCGAGACAACGGTGT+GGG + chr1_1:4372038-4372057 None:intergenic 60.0%
ACTGGACCGAGACAACGGTG+TGG + chr1_1:4372039-4372058 None:intergenic 60.0%
CGGTGTGGGACTTGGGTAGG+AGG + chr1_1:4372024-4372043 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4369385 4374251 4369385 ID=Msa0002490;Name=Msa0002490
chr1_1 mRNA 4369385 4374251 4369385 ID=Msa0002490-mRNA-1;Parent=Msa0002490;Name=Msa0002490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161|1|1|1|0.85|0.75|8|324|370
chr1_1 exon 4369385 4370053 4369385 ID=Msa0002490-mRNA-1:exon:1334;Parent=Msa0002490-mRNA-1
chr1_1 exon 4370873 4370959 4370873 ID=Msa0002490-mRNA-1:exon:1333;Parent=Msa0002490-mRNA-1
chr1_1 exon 4371242 4371352 4371242 ID=Msa0002490-mRNA-1:exon:1332;Parent=Msa0002490-mRNA-1
chr1_1 exon 4371452 4371534 4371452 ID=Msa0002490-mRNA-1:exon:1331;Parent=Msa0002490-mRNA-1
chr1_1 exon 4372088 4372199 4372088 ID=Msa0002490-mRNA-1:exon:1330;Parent=Msa0002490-mRNA-1
chr1_1 exon 4373104 4373292 4373104 ID=Msa0002490-mRNA-1:exon:1329;Parent=Msa0002490-mRNA-1
chr1_1 exon 4373733 4373988 4373733 ID=Msa0002490-mRNA-1:exon:1328;Parent=Msa0002490-mRNA-1
chr1_1 exon 4374161 4374251 4374161 ID=Msa0002490-mRNA-1:exon:1327;Parent=Msa0002490-mRNA-1
chr1_1 five_prime_UTR 4374161 4374251 4374161 ID=Msa0002490-mRNA-1:five_prime_utr;Parent=Msa0002490-mRNA-1
chr1_1 five_prime_UTR 4373919 4373988 4373919 ID=Msa0002490-mRNA-1:five_prime_utr;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4373733 4373918 4373733 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4373104 4373292 4373104 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4372088 4372199 4372088 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4371452 4371534 4371452 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4371242 4371352 4371242 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4370873 4370959 4370873 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 CDS 4369709 4370053 4369709 ID=Msa0002490-mRNA-1:cds;Parent=Msa0002490-mRNA-1
chr1_1 three_prime_UTR 4369385 4369708 4369385 ID=Msa0002490-mRNA-1:three_prime_utr;Parent=Msa0002490-mRNA-1
Gene Sequence

>Msa0002490

ATGTCTTCCAAGAGAAACCTTCCATCATGGATGACTTCAAAAGAAGATGATGGTCACGGAAATTTTGGAAAGAGACCAACTTTGGATGAAGGTGGTGAGAAATCCAGTGAAATTGGGTCTTCCAACAAGAAGACCAAAGTTCAAAATGAAAATGCTGGAAAATCTTCTGACTTCAACAAGCTTATGGAAGGTGTAGTTTTTGTGCTGTCGGGTTTTGTGAATCCGGAGCGTGGCATCTTGAGGTCGCGTGCTATGGAAATGGGAGCAGAGTATAAGCAGGACTGGAACTCTAATTGCACTCTTTTGGTTTGTGCATTTCCAAATACTCCCAAGTTTCGACAAGTTGAAGCTGATTGTGGAACCATTGTATCAAAGGATTGGATGCAGGAGTGTTACAGCCAGAGGAAACTCGTTGAAATTGATAGTTACCTTATGCATGCTGGGAAACCATGGCGTAAAGGAGGTAGATCACATGAAGTCAATGAAGAACAAAAACCATCTGTACCCCACAAACCACAAAAGCATGTTGAAGGAGAGCCTTCAAAGGAGACTACTTCCATAAAATCAAAGGGAAAAGACATTGACGATCCTAGGAAATGCTTTGAGCCTTCTGAAGTGAAGAAGTGGGCTCTTGATGATTTGAATAAAACAATTCAGTGGTTGGAAAGTCAAGAAGAAAAGCCAGATCCAAGTGAGATAACAAAAATAGCTGCAGAAGGGATTCTGACTTGTTTGCAAGATGCCATATGTTCTCTCGAGGAAAAACAGGACATTGGGAGAGTAACTGAGGACTGGAAATTCTTACCTCGAGTTGTTGAGGAGCTTGCAAAATTGGATGTTGTGGGAAACAATAAACCTTCAATGTCAAAGGAAGATATCCACAAACTAGCACTGGACTGCAAATGTATTTACGAGGAAGAACTAAATAGGTTAGATCATGAATCGACAAAGAAATCAAAGATAAATGAAGAACATAGGAGCAAAAATGGAAGAACAAATGCTGCATCTTCTTCTGGTGCAGTTGACTATGATAGTGATGATACAATCGAGATGACGGAACAAGAAATAGACCTTGCATATAAGACTTTATCCTCTAAGATGTGTCACCTGTGA

Protein sequence

>Msa0002490

MSSKRNLPSWMTSKEDDGHGNFGKRPTLDEGGEKSSEIGSSNKKTKVQNENAGKSSDFNKLMEGVVFVLSGFVNPERGILRSRAMEMGAEYKQDWNSNCTLLVCAFPNTPKFRQVEADCGTIVSKDWMQECYSQRKLVEIDSYLMHAGKPWRKGGRSHEVNEEQKPSVPHKPQKHVEGEPSKETTSIKSKGKDIDDPRKCFEPSEVKKWALDDLNKTIQWLESQEEKPDPSEITKIAAEGILTCLQDAICSLEEKQDIGRVTEDWKFLPRVVEELAKLDVVGNNKPSMSKEDIHKLALDCKCIYEEELNRLDHESTKKSKINEEHRSKNGRTNAASSSGAVDYDSDDTIEMTEQEIDLAYKTLSSKMCHL*