AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0994950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994950 MtrunA17_Chr6g0477091 99.438 178 1 0 1 178 1 178 1.56e-130 363
Msa0994950 MtrunA17_Chr1g0157771 55.696 158 63 1 21 178 12 162 4.67e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0994950 AT5G23550.1 74.719 178 42 2 1 178 1 175 1.18e-98 282
Msa0994950 AT5G24170.1 58.042 143 59 1 36 177 20 162 1.47e-54 170
Msa0994950 AT5G24170.2 55.000 100 44 1 36 134 20 119 3.58e-32 112
Msa0994950 AT4G26550.1 34.211 114 70 1 56 164 93 206 6.21e-11 59.3
Msa0994950 AT4G26550.2 34.211 114 70 1 56 164 32 145 7.09e-11 58.2

Find 47 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAGCTCTTTCGCTTTCA+TGG 0.160215 6_4:+70232406 Msa0994950:CDS
CATCATCGATACTTGCCTTT+TGG 0.243479 6_4:-70237468 None:intergenic
TTCCTCAAACCAATCAAGTT+TGG 0.259395 6_4:+70234489 Msa0994950:CDS
ATTTGTCACCAGAGATTATA+TGG 0.290063 6_4:+70234209 Msa0994950:intron
CTTGCGATTATCTTGGAGTT+TGG 0.300730 6_4:+70237685 Msa0994950:CDS
ACTATGGATCTGTGATTTAT+AGG 0.307110 6_4:-70232244 None:intergenic
TCCTCAAACCAATCAAGTTT+GGG 0.333791 6_4:+70234490 Msa0994950:CDS
TATCATACTTGCGATGTATA+TGG 0.341256 6_4:-70237519 None:intergenic
CTTTCGACTATGTCTGAAAT+AGG 0.343722 6_4:+70238905 Msa0994950:three_prime_UTR
AAGAAAGAGAGAAGAAACTA+TGG 0.344571 6_4:-70232260 None:intergenic
GACATTTCTTGCGATTATCT+TGG 0.352149 6_4:+70237678 Msa0994950:CDS
AATGTTATCCCAAACTTGAT+TGG 0.371483 6_4:-70234498 None:intergenic
TTTGCCATTTGCTTTGCTGC+TGG 0.373336 6_4:+70234233 Msa0994950:CDS
TCTTGGAAATTTGCTTTCAC+TGG 0.383477 6_4:+70234524 Msa0994950:CDS
TGGAGTTTGGAGCACTAGTT+TGG 0.397702 6_4:+70237698 Msa0994950:CDS
GTCCATGGTTTCAAGGATCA+TGG 0.431757 6_4:+70238550 Msa0994950:CDS
TTTGGGATAACATTCACTCT+TGG 0.432757 6_4:+70234507 Msa0994950:CDS
TTGCGAGGTCCATGGTTTCA+AGG 0.447760 6_4:+70238543 Msa0994950:CDS
TCCCAAACTTGATTGGTTTG+AGG 0.451750 6_4:-70234491 None:intergenic
GAAACCATGGACCTCGCAAA+AGG 0.453828 6_4:-70238539 None:intergenic
CTTCGAGAAAGTGAAAATAA+TGG 0.460885 6_4:+70232334 Msa0994950:CDS
GACATAGTCGAAAGCACCAC+TGG 0.480195 6_4:-70238896 None:intergenic
GAACTGCATTGATGATACTC+TGG 0.481859 6_4:+70238633 Msa0994950:three_prime_UTR
CTTGGAAATTTGCTTTCACT+GGG 0.482081 6_4:+70234525 Msa0994950:CDS
GCTGTTGCATAAATACGAAC+AGG 0.487558 6_4:-70237497 None:intergenic
AGAGGCACAAGCTGCTGCAT+TGG 0.489920 6_4:+70232379 Msa0994950:CDS
AGTGAAAATAATGGTGGGAA+TGG 0.497361 6_4:+70232343 Msa0994950:CDS
TACTCCAGCAGCAAAGCAAA+TGG 0.511667 6_4:-70234237 None:intergenic
AATAATGGTGGGAATGGAAG+TGG 0.528796 6_4:+70232349 Msa0994950:CDS
CAAACTTACCAACAGTGTAC+AGG 0.533605 6_4:-70234261 None:intergenic
GAAATTTGCTTTCACTGGGA+AGG 0.539615 6_4:+70234529 Msa0994950:CDS
CATTCCTCATAGGTCCCAAA+AGG 0.540053 6_4:+70237453 Msa0994950:CDS
AAACCATGGACCTCGCAAAA+GGG 0.541259 6_4:-70238538 None:intergenic
CGAGAAAGTGAAAATAATGG+TGG 0.551729 6_4:+70232337 Msa0994950:CDS
GGCAGCACAGCATTCCTCAT+AGG 0.551773 6_4:+70237443 Msa0994950:intron
AAGTGCAACGAAAGGACGAC+AGG 0.565120 6_4:-70238840 None:intergenic
CTGTACTCTGTCTAGAACAC+AGG 0.578666 6_4:+70232445 Msa0994950:CDS
AACCATGATCCTTGAAACCA+TGG 0.581792 6_4:-70238552 None:intergenic
AACTGCATTGATGATACTCT+GGG 0.591778 6_4:+70238634 Msa0994950:three_prime_UTR
TGGTTTGAGGAAAACAAGCA+TGG 0.594589 6_4:-70234478 None:intergenic
TTCTAGACAGAGTACAGTTG+CGG 0.601865 6_4:-70232439 None:intergenic
GAGAAAGTGAAAATAATGGT+GGG 0.615024 6_4:+70232338 Msa0994950:CDS
AATGGAAGTGGAAGACGAAG+AGG 0.638493 6_4:+70232361 Msa0994950:CDS
ACATAGTCGAAAGCACCACT+GGG 0.645779 6_4:-70238895 None:intergenic
GAGAAAGTGAGGGAAAACGA+TGG 0.677040 6_4:+70232295 Msa0994950:exon
TGGAGTAACCTGTACACTGT+TGG 0.688579 6_4:+70234253 Msa0994950:CDS
TTCAAATGATGAAATCCCAG+TGG 0.763712 6_4:+70238880 Msa0994950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGAATTTTAATTAAGATA+TGG + chr6_4:70233421-70233440 Msa0994950:intron 10.0%
!! AATAATAATATATACATACA+AGG + chr6_4:70233938-70233957 Msa0994950:intron 10.0%
!! TTCTTAAGTAAAATTTATAT+CGG + chr6_4:70234407-70234426 Msa0994950:intron 10.0%
!! AAATAATTATTGTAATTAGT+AGG - chr6_4:70234952-70234971 None:intergenic 10.0%
!! TTTAATTAAGATATGGTAAT+TGG + chr6_4:70233428-70233447 Msa0994950:intron 15.0%
!! TTTGTAAAAAGATGAAATTA+AGG + chr6_4:70233641-70233660 Msa0994950:intron 15.0%
!! GAAATTAAGGAAAAAAAATT+CGG + chr6_4:70233654-70233673 Msa0994950:intron 15.0%
!!! AAATACTTTTTATATAGGTA+AGG - chr6_4:70234814-70234833 None:intergenic 15.0%
!!! TTCAGAAATACTTTTTATAT+AGG - chr6_4:70234819-70234838 None:intergenic 15.0%
!!! TTAAGTTTTTATAGTAAACA+TGG - chr6_4:70236104-70236123 None:intergenic 15.0%
!!! ATAAAAAGCATGAATTTTTT+TGG + chr6_4:70236584-70236603 Msa0994950:intron 15.0%
!!! TATCATAATAACATTTTCAA+TGG + chr6_4:70236993-70237012 Msa0994950:intron 15.0%
!!! AAGAAATTGCTTAGATTTTA+AGG - chr6_4:70232193-70232212 None:intergenic 20.0%
!! AACTGAGAAATTGAATATTT+AGG + chr6_4:70232517-70232536 Msa0994950:intron 20.0%
!! AAAAATATATATTTCGTGTC+TGG - chr6_4:70232628-70232647 None:intergenic 20.0%
!! AATAGGAAAAATGGATATTT+AGG + chr6_4:70232672-70232691 Msa0994950:intron 20.0%
!! TATTAGGATAGAAAATAACT+GGG + chr6_4:70233257-70233276 Msa0994950:intron 20.0%
!! TTATTTATCTGAACATTATG+TGG + chr6_4:70233287-70233306 Msa0994950:intron 20.0%
!!! TTTATTATTTTTCCTCAACT+TGG - chr6_4:70233369-70233388 None:intergenic 20.0%
!! ATAGAGATTATCATTTATTG+TGG + chr6_4:70233509-70233528 Msa0994950:intron 20.0%
!!! TTTAGAGTTTTGTATATTGT+TGG + chr6_4:70233543-70233562 Msa0994950:intron 20.0%
!! TGATAATAATGATTTACTAG+TGG + chr6_4:70233600-70233619 Msa0994950:intron 20.0%
!! GATGAATAATCACTAATTAA+TGG + chr6_4:70234434-70234453 Msa0994950:intron 20.0%
!!! AAATATTTGAAATTCGTGAA+TGG - chr6_4:70234632-70234651 None:intergenic 20.0%
!! CTAAAATATCTTCATATGAT+TGG - chr6_4:70234766-70234785 None:intergenic 20.0%
!! TTATTGTAATTAGTAGGAAT+TGG - chr6_4:70234946-70234965 None:intergenic 20.0%
!!! AGTTGACTAAATTGTTATTT+TGG + chr6_4:70235024-70235043 Msa0994950:intron 20.0%
!! TCGAAAAATTATTTAGTGAA+AGG + chr6_4:70235653-70235672 Msa0994950:intron 20.0%
!! CTTTCTCAAGTTAATAAATA+CGG + chr6_4:70236175-70236194 Msa0994950:intron 20.0%
!!! AATATTTTACCACCAAAAAA+CGG + chr6_4:70236449-70236468 Msa0994950:intron 20.0%
!! ATAAGATTATAGAAATCAGT+CGG - chr6_4:70236673-70236692 None:intergenic 20.0%
!!! ATTCACTGTTTTTAATTTTC+TGG + chr6_4:70237125-70237144 Msa0994950:intron 20.0%
!!! AAAACAAATATTTTTCCCTT+TGG + chr6_4:70237237-70237256 Msa0994950:intron 20.0%
!! ACTATAAAAAAAAGGTTACA+TGG - chr6_4:70237750-70237769 None:intergenic 20.0%
!! ACATTATACTAATTTCAGTT+CGG - chr6_4:70237911-70237930 None:intergenic 20.0%
!!! TTTTAAGCTGAAACAAAATT+TGG - chr6_4:70238156-70238175 None:intergenic 20.0%
!!! TATCTTTTGTTCTTTTACAA+AGG - chr6_4:70238230-70238249 None:intergenic 20.0%
!! ATAATGACAATAACAAATTC+AGG + chr6_4:70238308-70238327 Msa0994950:intron 20.0%
!! AAATAAAAATCTGTAATGCA+TGG + chr6_4:70238340-70238359 Msa0994950:intron 20.0%
!! ATAATCATTAATGTCACATT+TGG - chr6_4:70238440-70238459 None:intergenic 20.0%
!! TAAAAAATCAGAAATGCAAA+GGG - chr6_4:70238492-70238511 None:intergenic 20.0%
!! TTAAAAAATCAGAAATGCAA+AGG - chr6_4:70238493-70238512 None:intergenic 20.0%
!!! TTTCTGATTTTTTAATTGAC+AGG + chr6_4:70238498-70238517 Msa0994950:intron 20.0%
!!! TGCTTAGATTTTAAGGAATT+GGG - chr6_4:70232186-70232205 None:intergenic 25.0%
!!! TTGCTTAGATTTTAAGGAAT+TGG - chr6_4:70232187-70232206 None:intergenic 25.0%
! TACCTCATAAATATAACATG+CGG - chr6_4:70232847-70232866 None:intergenic 25.0%
! TTCAAATTACTTGAGAATTG+AGG + chr6_4:70233015-70233034 Msa0994950:intron 25.0%
! GTATTAGGATAGAAAATAAC+TGG + chr6_4:70233256-70233275 Msa0994950:intron 25.0%
!!! AGATTGGTTTTATGAATTAC+AGG + chr6_4:70233814-70233833 Msa0994950:intron 25.0%
! CAAAGGAAACATAAGAATTT+AGG + chr6_4:70233843-70233862 Msa0994950:intron 25.0%
!!! TTTCTAGTTTACAAGACTAA+GGG + chr6_4:70234304-70234323 Msa0994950:intron 25.0%
! ACATGATTTATTCCTTAACA+TGG + chr6_4:70234375-70234394 Msa0994950:intron 25.0%
! GAAACTAATATACCATGTTA+AGG - chr6_4:70234390-70234409 None:intergenic 25.0%
!!! AACTATACTTTGTTGTTGTT+TGG + chr6_4:70234575-70234594 Msa0994950:intron 25.0%
! TACAGTCTGTAATGTAAAAT+GGG + chr6_4:70234675-70234694 Msa0994950:intron 25.0%
!! AATGTAAAATGGGTGTTTTT+CGG + chr6_4:70234685-70234704 Msa0994950:intron 25.0%
! ATTAAGGACGTAATAAGTAA+TGG - chr6_4:70234736-70234755 None:intergenic 25.0%
! ATAAGCAAGTACTAACTAAA+TGG + chr6_4:70234884-70234903 Msa0994950:intron 25.0%
! TAAGCAAGTACTAACTAAAT+GGG + chr6_4:70234885-70234904 Msa0994950:intron 25.0%
!!! AGATTTTTGTTGATAAGCAT+TGG + chr6_4:70235120-70235139 Msa0994950:intron 25.0%
! AAGATTATGAGTAATACTGA+TGG + chr6_4:70235178-70235197 Msa0994950:intron 25.0%
! TTGTCACAAAACAACTTTAT+AGG + chr6_4:70235209-70235228 Msa0994950:intron 25.0%
! TGTCACAAAACAACTTTATA+GGG + chr6_4:70235210-70235229 Msa0994950:intron 25.0%
!!! CTTTGAGATATTGTAATACA+TGG + chr6_4:70235427-70235446 Msa0994950:intron 25.0%
! TGATATGTTGTTGAAATTGA+AGG + chr6_4:70235531-70235550 Msa0994950:intron 25.0%
! ATTTAGTGAAAGGAATAACA+TGG + chr6_4:70235663-70235682 Msa0994950:intron 25.0%
! TTTAGTGAAAGGAATAACAT+GGG + chr6_4:70235664-70235683 Msa0994950:intron 25.0%
! GTATGAATGTTTGGATAAAA+TGG - chr6_4:70235953-70235972 None:intergenic 25.0%
!!! ATTGATAATGAAGCTACAAA+TGG - chr6_4:70235979-70235998 None:intergenic 25.0%
!! CGTATTTATTAACTTGAGAA+AGG - chr6_4:70236177-70236196 None:intergenic 25.0%
! AGTTATATGTAGAGAATTCT+AGG + chr6_4:70236242-70236261 Msa0994950:intron 25.0%
! TAAGATTATAGAAATCAGTC+GGG - chr6_4:70236672-70236691 None:intergenic 25.0%
!! TAGTCTACAAAACTTTTAGA+CGG + chr6_4:70236865-70236884 Msa0994950:intron 25.0%
!!! TTTTTAGTATACACTTTTCC+AGG + chr6_4:70237039-70237058 Msa0994950:intron 25.0%
! ACCAGATTAAAAAAACGTTA+AGG - chr6_4:70237067-70237086 None:intergenic 25.0%
!!! TTTTTAATTTTCTGGATGAG+TGG + chr6_4:70237133-70237152 Msa0994950:intron 25.0%
!! ATTTAAAATGTCACAAGTGT+AGG - chr6_4:70237318-70237337 None:intergenic 25.0%
! AGATAAATAATCCACAAAGT+TGG - chr6_4:70237363-70237382 None:intergenic 25.0%
!!! CTGAAGGTACTATAAAAAAA+AGG - chr6_4:70237758-70237777 None:intergenic 25.0%
! TAATTCTCATGAATCTAACA+AGG + chr6_4:70237796-70237815 Msa0994950:intron 25.0%
! ATGAATCTAACAAGGAAATA+AGG + chr6_4:70237804-70237823 Msa0994950:intron 25.0%
!!! AGTTTTATTGCGTAATCTTA+AGG + chr6_4:70238050-70238069 Msa0994950:intron 25.0%
!!! TTTTAGGTTACTCATTCAAA+AGG + chr6_4:70238593-70238612 Msa0994950:exon 25.0%
!! AATAAAAAAAGTGCAACGAA+AGG - chr6_4:70238851-70238870 None:intergenic 25.0%
!! GATTTTAAGGAATTGGGTTT+GGG - chr6_4:70232180-70232199 None:intergenic 30.0%
!! AGATTTTAAGGAATTGGGTT+TGG - chr6_4:70232181-70232200 None:intergenic 30.0%
ACTATGGATCTGTGATTTAT+AGG - chr6_4:70232247-70232266 None:intergenic 30.0%
AAGAAAGAGAGAAGAAACTA+TGG - chr6_4:70232263-70232282 None:intergenic 30.0%
! CATTATTTTCACTTTCTCGA+AGG - chr6_4:70232336-70232355 None:intergenic 30.0%
CTTCGAGAAAGTGAAAATAA+TGG + chr6_4:70232334-70232353 Msa0994950:CDS 30.0%
GAGAAAGTGAAAATAATGGT+GGG + chr6_4:70232338-70232357 Msa0994950:CDS 30.0%
!!! TTTAGGTTTTGATTCGAGTA+TGG + chr6_4:70232689-70232708 Msa0994950:intron 30.0%
TGTAATGAACAAAACTGTGA+CGG - chr6_4:70232897-70232916 None:intergenic 30.0%
CAAGAGATGTAAGTTGTATT+AGG + chr6_4:70233241-70233260 Msa0994950:intron 30.0%
ACTTGGTATTGTATATCTGA+AGG - chr6_4:70233352-70233371 None:intergenic 30.0%
AGATATACAATACCAAGTTG+AGG + chr6_4:70233354-70233373 Msa0994950:intron 30.0%
!! AGATAACTTATGCTGACTTT+AGG + chr6_4:70233570-70233589 Msa0994950:intron 30.0%
TGAATTACAGGATGAAACAA+AGG + chr6_4:70233826-70233845 Msa0994950:intron 30.0%
!! AGCATAATTTTTGTCACTTG+AGG + chr6_4:70233867-70233886 Msa0994950:intron 30.0%
ATTTGTCACCAGAGATTATA+TGG + chr6_4:70234209-70234228 Msa0994950:intron 30.0%
!! CTTAGTCTTGTAAACTAGAA+AGG - chr6_4:70234305-70234324 None:intergenic 30.0%
!! CTTTCTAGTTTACAAGACTA+AGG + chr6_4:70234303-70234322 Msa0994950:intron 30.0%
AATGTTATCCCAAACTTGAT+TGG - chr6_4:70234501-70234520 None:intergenic 30.0%
TGAAATTCGTGAATGGAAAT+TGG - chr6_4:70234625-70234644 None:intergenic 30.0%
CTACAGTCTGTAATGTAAAA+TGG + chr6_4:70234674-70234693 Msa0994950:intron 30.0%
!! TATGATTGGTGTTGTGATTA+AGG - chr6_4:70234752-70234771 None:intergenic 30.0%
TATAGGTAAGGCAGTATTAT+AGG - chr6_4:70234802-70234821 None:intergenic 30.0%
! ATAATCTTTTACCAGCTTGA+GGG - chr6_4:70234985-70235004 None:intergenic 30.0%
ATCAACAAAAATCTAGACAC+AGG - chr6_4:70235114-70235133 None:intergenic 30.0%
TGTAATACATGGTATACAAC+AGG + chr6_4:70235438-70235457 Msa0994950:intron 30.0%
ACCAAAAAATATGTCACGTT+TGG + chr6_4:70235503-70235522 Msa0994950:intron 30.0%
!!! ACCAAACGTGACATATTTTT+TGG - chr6_4:70235507-70235526 None:intergenic 30.0%
TATGTTGTTGAAATTGAAGG+CGG + chr6_4:70235534-70235553 Msa0994950:intron 30.0%
AGTTTGACATGTATCTCATT+TGG - chr6_4:70235754-70235773 None:intergenic 30.0%
TGAATGTTTGGATAAAATGG+TGG - chr6_4:70235950-70235969 None:intergenic 30.0%
AAATGGCATGTATGAATGTT+TGG - chr6_4:70235962-70235981 None:intergenic 30.0%
!!! TTTTTTTTAAGTCATGCTCC+TGG - chr6_4:70236009-70236028 None:intergenic 30.0%
! TTTGACAATCCATTTTGTTG+CGG + chr6_4:70236043-70236062 Msa0994950:intron 30.0%
TAAAAGATTACACTCTGACA+TGG - chr6_4:70236151-70236170 None:intergenic 30.0%
! GCTGAAACTGTTGAATTTTA+TGG + chr6_4:70236264-70236283 Msa0994950:intron 30.0%
! AATTTTATGGTCTGACATAG+TGG + chr6_4:70236277-70236296 Msa0994950:intron 30.0%
! TATTTAATGCTGTTTGTAGC+CGG - chr6_4:70236344-70236363 None:intergenic 30.0%
AACAGCCATATAGTAAACAA+CGG + chr6_4:70236395-70236414 Msa0994950:intron 30.0%
! TTTTGCCGTTGTTTACTATA+TGG - chr6_4:70236403-70236422 None:intergenic 30.0%
TTACTTCTATCTTCTTTCCT+TGG + chr6_4:70236706-70236725 Msa0994950:intron 30.0%
TACTTCTATCTTCTTTCCTT+GGG + chr6_4:70236707-70236726 Msa0994950:intron 30.0%
CAATAAGTTCGAGATCTAAT+AGG + chr6_4:70236909-70236928 Msa0994950:intron 30.0%
GATCAAACAGGATTTGTATA+TGG + chr6_4:70236937-70236956 Msa0994950:intron 30.0%
AGGATTTGTATATGGACATA+TGG + chr6_4:70236945-70236964 Msa0994950:intron 30.0%
GGATTTGTATATGGACATAT+GGG + chr6_4:70236946-70236965 Msa0994950:intron 30.0%
TTTCAATGGAGAATTAGAGA+TGG + chr6_4:70237007-70237026 Msa0994950:intron 30.0%
!!! GCCTTAACGTTTTTTTAATC+TGG + chr6_4:70237063-70237082 Msa0994950:intron 30.0%
AAACAGTGAATGAAGTTTAC+AGG - chr6_4:70237116-70237135 None:intergenic 30.0%
TTCAAGCATATTGCAACAAA+GGG - chr6_4:70237219-70237238 None:intergenic 30.0%
TTTCAAGCATATTGCAACAA+AGG - chr6_4:70237220-70237239 None:intergenic 30.0%
AAGTGTAGGATGAAATGATA+GGG - chr6_4:70237304-70237323 None:intergenic 30.0%
AAAATGCAAATCCAACTTTG+TGG + chr6_4:70237349-70237368 Msa0994950:intron 30.0%
!!! CTAAGTGTGAGTGTTTTTTA+TGG + chr6_4:70237422-70237441 Msa0994950:intron 30.0%
TATCATACTTGCGATGTATA+TGG - chr6_4:70237522-70237541 None:intergenic 30.0%
GTGCTAATTCAATTTACACT+AGG - chr6_4:70237847-70237866 None:intergenic 30.0%
! GCCATATAGCATTTTTCTTA+GGG - chr6_4:70237875-70237894 None:intergenic 30.0%
TTTATTGCGTAATCTTAAGG+AGG + chr6_4:70238053-70238072 Msa0994950:intron 30.0%
TTATTGCGTAATCTTAAGGA+GGG + chr6_4:70238054-70238073 Msa0994950:intron 30.0%
GATAGTTCAAATCTTCTTGA+CGG + chr6_4:70238076-70238095 Msa0994950:intron 30.0%
! TATCATATTTTATGCTGGAG+TGG - chr6_4:70238391-70238410 None:intergenic 30.0%
! AGACGTATCATATTTTATGC+TGG - chr6_4:70238396-70238415 None:intergenic 30.0%
! ATGCTTTGACACAGAATTTT+AGG + chr6_4:70238577-70238596 Msa0994950:CDS 30.0%
GACTGTCACAAAAATACAAA+TGG + chr6_4:70238679-70238698 Msa0994950:three_prime_UTR 30.0%
GTCACAAAAATACAAATGGA+TGG + chr6_4:70238683-70238702 Msa0994950:three_prime_UTR 30.0%
ACAGATTCCAAAAAAGAAAG+GGG - chr6_4:70238730-70238749 None:intergenic 30.0%
GACAGATTCCAAAAAAGAAA+GGG - chr6_4:70238731-70238750 None:intergenic 30.0%
AGACAGATTCCAAAAAAGAA+AGG - chr6_4:70238732-70238751 None:intergenic 30.0%
!!! TTCTTTTTTGGAATCTGTCT+AGG + chr6_4:70238732-70238751 Msa0994950:three_prime_UTR 30.0%
! TCATTTTCTCGAGAAAGTGA+GGG + chr6_4:70232285-70232304 Msa0994950:five_prime_UTR 35.0%
CGAGAAAGTGAAAATAATGG+TGG + chr6_4:70232337-70232356 Msa0994950:CDS 35.0%
! AGTGAAAATAATGGTGGGAA+TGG + chr6_4:70232343-70232362 Msa0994950:CDS 35.0%
CGCACTCATAATAGGAAAAA+TGG + chr6_4:70232663-70232682 Msa0994950:intron 35.0%
GACCGCATGTTATATTTATG+AGG + chr6_4:70232842-70232861 Msa0994950:intron 35.0%
! TTTTGCACAAAACCCTAAAG+CGG - chr6_4:70232874-70232893 None:intergenic 35.0%
ATTACACAAGACATCGTCTT+TGG + chr6_4:70232911-70232930 Msa0994950:intron 35.0%
AAGGTTTCGTCCTTTGTAAA+AGG - chr6_4:70233056-70233075 None:intergenic 35.0%
TTACAAAGGACGAAACCTTA+AGG + chr6_4:70233057-70233076 Msa0994950:intron 35.0%
TACAAAGGACGAAACCTTAA+GGG + chr6_4:70233058-70233077 Msa0994950:intron 35.0%
TGAACATTATGTGGAATCTG+AGG + chr6_4:70233296-70233315 Msa0994950:intron 35.0%
TAGAAAACCAACACTCATGA+GGG - chr6_4:70233399-70233418 None:intergenic 35.0%
TTAGAAAACCAACACTCATG+AGG - chr6_4:70233400-70233419 None:intergenic 35.0%
!! ATTGGTAACGTTTGTCTTCT+CGG + chr6_4:70233446-70233465 Msa0994950:intron 35.0%
ATTCGGAATACGAAATGAAC+TGG + chr6_4:70233671-70233690 Msa0994950:intron 35.0%
GACTAGGAATCTTTATGAAC+TGG + chr6_4:70233716-70233735 Msa0994950:intron 35.0%
AACTGGATTAATCGAGAATG+TGG + chr6_4:70233733-70233752 Msa0994950:intron 35.0%
CAAAATACGATCCTCCAAAT+AGG - chr6_4:70233759-70233778 None:intergenic 35.0%
! ATTTGGAGGATCGTATTTTG+AGG + chr6_4:70233759-70233778 Msa0994950:intron 35.0%
GTAAGGAATAAAACTTGAGG+AGG - chr6_4:70234092-70234111 None:intergenic 35.0%
TGGCAAAACCATATAATCTC+TGG - chr6_4:70234220-70234239 None:intergenic 35.0%
CTAGCACATTTACATGACAA+AGG - chr6_4:70234353-70234372 None:intergenic 35.0%
CTTTGTCATGTAAATGTGCT+AGG + chr6_4:70234351-70234370 Msa0994950:intron 35.0%
TTCCTCAAACCAATCAAGTT+TGG + chr6_4:70234489-70234508 Msa0994950:CDS 35.0%
TCCTCAAACCAATCAAGTTT+GGG + chr6_4:70234490-70234509 Msa0994950:CDS 35.0%
! TTTGGGATAACATTCACTCT+TGG + chr6_4:70234507-70234526 Msa0994950:CDS 35.0%
! TCTTGGAAATTTGCTTTCAC+TGG + chr6_4:70234524-70234543 Msa0994950:CDS 35.0%
! CTTGGAAATTTGCTTTCACT+GGG + chr6_4:70234525-70234544 Msa0994950:CDS 35.0%
!! TAAAATGGGTGTTTTTCGGT+AGG + chr6_4:70234689-70234708 Msa0994950:intron 35.0%
!! AAAATGGGTGTTTTTCGGTA+GGG + chr6_4:70234690-70234709 Msa0994950:intron 35.0%
! TAATCTTTTACCAGCTTGAG+GGG - chr6_4:70234984-70235003 None:intergenic 35.0%
! GATAATCTTTTACCAGCTTG+AGG - chr6_4:70234986-70235005 None:intergenic 35.0%
!! GTTGTTTTGTGACAACAGAT+TGG - chr6_4:70235204-70235223 None:intergenic 35.0%
! AGTTTAGAGCTATAACACGA+GGG - chr6_4:70235288-70235307 None:intergenic 35.0%
! AAGTTTAGAGCTATAACACG+AGG - chr6_4:70235289-70235308 None:intergenic 35.0%
!! TTATAGCTCTAAACTTTGCC+TGG + chr6_4:70235293-70235312 Msa0994950:intron 35.0%
AATATCTCAAAGTTGCTCCA+GGG - chr6_4:70235419-70235438 None:intergenic 35.0%
AAAATATGTCACGTTTGGTC+TGG + chr6_4:70235508-70235527 Msa0994950:intron 35.0%
ATGTTGTTGAAATTGAAGGC+GGG + chr6_4:70235535-70235554 Msa0994950:intron 35.0%
TTCAACTAACCTCCATACAA+AGG + chr6_4:70235560-70235579 Msa0994950:intron 35.0%
! GTGGCATTGAAGTTTAATCA+TGG + chr6_4:70235585-70235604 Msa0994950:intron 35.0%
TGAAAGGAATAACATGGGTT+TGG + chr6_4:70235669-70235688 Msa0994950:intron 35.0%
!!! TCTGTTTGCTCCTTTTTCAA+AGG + chr6_4:70235708-70235727 Msa0994950:intron 35.0%
! AAATGGAGTGCCTTTGAAAA+AGG - chr6_4:70235721-70235740 None:intergenic 35.0%
CATGTATCTCATTTGGTTGT+GGG - chr6_4:70235747-70235766 None:intergenic 35.0%
ACATGTATCTCATTTGGTTG+TGG - chr6_4:70235748-70235767 None:intergenic 35.0%
AAACTAAAACTCCAACAGAG+TGG - chr6_4:70235834-70235853 None:intergenic 35.0%
!!! TTCAAAGGGGTTCGATTTTT+TGG - chr6_4:70235883-70235902 None:intergenic 35.0%
TCCAGCTTAAGGATTTCAAA+GGG - chr6_4:70235897-70235916 None:intergenic 35.0%
TTCCAGCTTAAGGATTTCAA+AGG - chr6_4:70235898-70235917 None:intergenic 35.0%
! CAAGATTGATTTCCAGCTTA+AGG - chr6_4:70235908-70235927 None:intergenic 35.0%
GTGGAAGATATGGAATAAAG+AGG - chr6_4:70235931-70235950 None:intergenic 35.0%
! GGATAAAATGGTGGAAGATA+TGG - chr6_4:70235941-70235960 None:intergenic 35.0%
TCATTATCAATAGCGAATCC+AGG + chr6_4:70235988-70236007 Msa0994950:intron 35.0%
! TTGACAATCCATTTTGTTGC+GGG + chr6_4:70236044-70236063 Msa0994950:intron 35.0%
GTTAATAAATACGGTGAGCA+CGG + chr6_4:70236184-70236203 Msa0994950:intron 35.0%
TATTGAGCAAGATGTTGTTG+CGG - chr6_4:70236310-70236329 None:intergenic 35.0%
GCTCAATAAACTGCAAAAAC+CGG + chr6_4:70236322-70236341 Msa0994950:intron 35.0%
ATTATTGTGTTGCAGGAATG+AGG - chr6_4:70236369-70236388 None:intergenic 35.0%
! TTGTGCTATTATTGTGTTGC+AGG - chr6_4:70236376-70236395 None:intergenic 35.0%
GGCAAAAACACTCACAAAAA+AGG + chr6_4:70236416-70236435 Msa0994950:intron 35.0%
! ATTTTACCACCAAAAAACGG+TGG + chr6_4:70236452-70236471 Msa0994950:intron 35.0%
CCTTTACGAATACAAGACAT+CGG - chr6_4:70236760-70236779 None:intergenic 35.0%
!! TAATAGGTGTTGGATCAAAC+AGG + chr6_4:70236925-70236944 Msa0994950:intron 35.0%
AATTCATTCAGAACCATGTG+TGG - chr6_4:70236974-70236993 None:intergenic 35.0%
TAAAAAAACGTTAAGGCTCC+TGG - chr6_4:70237060-70237079 None:intergenic 35.0%
AAGTTTACAGGTAGAGATGA+AGG - chr6_4:70237104-70237123 None:intergenic 35.0%
AGATTGTCTGCTGTAAAAAC+TGG + chr6_4:70237266-70237285 Msa0994950:intron 35.0%
CAAGTGTAGGATGAAATGAT+AGG - chr6_4:70237305-70237324 None:intergenic 35.0%
! ATCATCGATACTTGCCTTTT+GGG - chr6_4:70237470-70237489 None:intergenic 35.0%
GACATTTCTTGCGATTATCT+TGG + chr6_4:70237678-70237697 Msa0994950:CDS 35.0%
AAGGTTACATGGAATGCATT+TGG - chr6_4:70237739-70237758 None:intergenic 35.0%
GTATGCTTACATTACACTGA+AGG - chr6_4:70237774-70237793 None:intergenic 35.0%
! AAATAAGGAGTATGCTACGT+GGG + chr6_4:70237819-70237838 Msa0994950:intron 35.0%
GCCCTAAGAAAAATGCTATA+TGG + chr6_4:70237871-70237890 Msa0994950:intron 35.0%
! GGCCATATAGCATTTTTCTT+AGG - chr6_4:70237876-70237895 None:intergenic 35.0%
TTGTTAAGTACTCACAGTCA+AGG + chr6_4:70237947-70237966 Msa0994950:intron 35.0%
! TTCTTGACGGACGATTTAAA+AGG + chr6_4:70238089-70238108 Msa0994950:intron 35.0%
GCTGAAACAAAATTTGGAGA+AGG - chr6_4:70238150-70238169 None:intergenic 35.0%
! CAAAGGCTTTATACAAGTGA+AGG - chr6_4:70238213-70238232 None:intergenic 35.0%
TTAGAACATTGTACAAGGAG+TGG - chr6_4:70238465-70238484 None:intergenic 35.0%
GAGAGTTAGAACATTGTACA+AGG - chr6_4:70238470-70238489 None:intergenic 35.0%
! AACTGCATTGATGATACTCT+GGG + chr6_4:70238634-70238653 Msa0994950:three_prime_UTR 35.0%
! TTTTGTGACAGTCTTTCTTC+AGG - chr6_4:70238672-70238691 None:intergenic 35.0%
! CTGTCTAGGTTCTTTTTGTT+TGG + chr6_4:70238746-70238765 Msa0994950:three_prime_UTR 35.0%
TTCAAATGATGAAATCCCAG+TGG + chr6_4:70238880-70238899 Msa0994950:three_prime_UTR 35.0%
! CTTTCGACTATGTCTGAAAT+AGG + chr6_4:70238905-70238924 Msa0994950:three_prime_UTR 35.0%
! CTCATTTTCTCGAGAAAGTG+AGG + chr6_4:70232284-70232303 Msa0994950:five_prime_UTR 40.0%
! AATAATGGTGGGAATGGAAG+TGG + chr6_4:70232349-70232368 Msa0994950:CDS 40.0%
TTCTAGACAGAGTACAGTTG+CGG - chr6_4:70232442-70232461 None:intergenic 40.0%
TCTTTGACACTGTGATATGC+TGG + chr6_4:70232713-70232732 Msa0994950:intron 40.0%
!! TATGAGGTATTGTCCGCTTT+AGG + chr6_4:70232858-70232877 Msa0994950:intron 40.0%
!! ATGAGGTATTGTCCGCTTTA+GGG + chr6_4:70232859-70232878 Msa0994950:intron 40.0%
TTGAGAATTGAGGCTACTCA+TGG + chr6_4:70233025-70233044 Msa0994950:intron 40.0%
TGGACACTATCTTGGAAATG+TGG + chr6_4:70233101-70233120 Msa0994950:intron 40.0%
TATCTTGGAAATGTGGCTAG+AGG + chr6_4:70233108-70233127 Msa0994950:intron 40.0%
TTCAGATTGACGATGTCTAC+GGG - chr6_4:70233189-70233208 None:intergenic 40.0%
CTTCAGATTGACGATGTCTA+CGG - chr6_4:70233190-70233209 None:intergenic 40.0%
! ACATCGTCAATCTGAAGTGT+CGG + chr6_4:70233193-70233212 Msa0994950:intron 40.0%
AGAAAACCAACACTCATGAG+GGG - chr6_4:70233398-70233417 None:intergenic 40.0%
!! TTGGTAACGTTTGTCTTCTC+GGG + chr6_4:70233447-70233466 Msa0994950:intron 40.0%
TCTTCTCGGGTGATATCATA+TGG + chr6_4:70233460-70233479 Msa0994950:intron 40.0%
CTTCTCGGGTGATATCATAT+GGG + chr6_4:70233461-70233480 Msa0994950:intron 40.0%
TACGAAATGAACTGGATGAG+TGG + chr6_4:70233679-70233698 Msa0994950:intron 40.0%
GGAGTACATTTCATACGACT+AGG + chr6_4:70233700-70233719 Msa0994950:intron 40.0%
AATCGAGAATGTGGCCTATT+TGG + chr6_4:70233742-70233761 Msa0994950:intron 40.0%
TAACACCAGCATGTTTGCTT+TGG - chr6_4:70233795-70233814 None:intergenic 40.0%
! CAAACATGCTGGTGTTAGAT+TGG + chr6_4:70233798-70233817 Msa0994950:intron 40.0%
ACCCTAATCAACTGCTTTAG+CGG - chr6_4:70233993-70234012 None:intergenic 40.0%
CGCGTAAGGAATAAAACTTG+AGG - chr6_4:70234095-70234114 None:intergenic 40.0%
CAAACTTACCAACAGTGTAC+AGG - chr6_4:70234264-70234283 None:intergenic 40.0%
! AACAAGCATGGACTGTAAGA+TGG - chr6_4:70234469-70234488 None:intergenic 40.0%
TGGTTTGAGGAAAACAAGCA+TGG - chr6_4:70234481-70234500 None:intergenic 40.0%
!! TCCCAAACTTGATTGGTTTG+AGG - chr6_4:70234494-70234513 None:intergenic 40.0%
! GAAATTTGCTTTCACTGGGA+AGG + chr6_4:70234529-70234548 Msa0994950:CDS 40.0%
!! AAATGGGTGTTTTTCGGTAG+GGG + chr6_4:70234691-70234710 Msa0994950:intron 40.0%
TAATGGAACAATATCCCACC+TGG - chr6_4:70234719-70234738 None:intergenic 40.0%
! AATCTTTTACCAGCTTGAGG+GGG - chr6_4:70234983-70235002 None:intergenic 40.0%
GAGGGATATGTGAGTTATTG+TGG - chr6_4:70235270-70235289 None:intergenic 40.0%
TAGTCTCTCAAACTATGACC+AGG - chr6_4:70235314-70235333 None:intergenic 40.0%
ACAACCTGCATAATAGGCTT+CGG + chr6_4:70235344-70235363 Msa0994950:intron 40.0%
CAATATCTCAAAGTTGCTCC+AGG - chr6_4:70235420-70235439 None:intergenic 40.0%
AACTAACCTCCATACAAAGG+TGG + chr6_4:70235563-70235582 Msa0994950:intron 40.0%
AATAGAACATGGCGGCATAA+CGG + chr6_4:70235623-70235642 Msa0994950:intron 40.0%
TGGACATCAAGAATTGCTGT+GGG - chr6_4:70235794-70235813 None:intergenic 40.0%
ATGGACATCAAGAATTGCTG+TGG - chr6_4:70235795-70235814 None:intergenic 40.0%
!! ACAGAGTGGTGGATTACTTA+CGG - chr6_4:70235820-70235839 None:intergenic 40.0%
TAAGTAATCCACCACTCTGT+TGG + chr6_4:70235820-70235839 Msa0994950:intron 40.0%
CCAGCTTAAGGATTTCAAAG+GGG - chr6_4:70235896-70235915 None:intergenic 40.0%
! TGACAATCCATTTTGTTGCG+GGG + chr6_4:70236045-70236064 Msa0994950:intron 40.0%
ATTCAACCCATTACCAGCAT+GGG - chr6_4:70236528-70236547 None:intergenic 40.0%
TATTCAACCCATTACCAGCA+TGG - chr6_4:70236529-70236548 None:intergenic 40.0%
TTCTATCTTCTTTCCTTGGG+TGG + chr6_4:70236710-70236729 Msa0994950:intron 40.0%
TCTATCTTCTTTCCTTGGGT+GGG + chr6_4:70236711-70236730 Msa0994950:intron 40.0%
CCGATGTCTTGTATTCGTAA+AGG + chr6_4:70236757-70236776 Msa0994950:intron 40.0%
GTTCGAGATCTAATAGGTGT+TGG + chr6_4:70236915-70236934 Msa0994950:intron 40.0%
CAATAGCCAGATCAATCAGT+GGG + chr6_4:70237164-70237183 Msa0994950:intron 40.0%
AATAGCCAGATCAATCAGTG+GGG + chr6_4:70237165-70237184 Msa0994950:intron 40.0%
AGACAATCTGTCTCACCAAA+GGG - chr6_4:70237255-70237274 None:intergenic 40.0%
! CATCATCGATACTTGCCTTT+TGG - chr6_4:70237471-70237490 None:intergenic 40.0%
GCTGTTGCATAAATACGAAC+AGG - chr6_4:70237500-70237519 None:intergenic 40.0%
CTTGCGATTATCTTGGAGTT+TGG + chr6_4:70237685-70237704 Msa0994950:CDS 40.0%
! GAAATAAGGAGTATGCTACG+TGG + chr6_4:70237818-70237837 Msa0994950:intron 40.0%
AAAATGCTATATGGCCAGCA+TGG + chr6_4:70237880-70237899 Msa0994950:intron 40.0%
ACTTAAACATGTCTGCTCAG+TGG + chr6_4:70238023-70238042 Msa0994950:intron 40.0%
AACCATGATCCTTGAAACCA+TGG - chr6_4:70238555-70238574 None:intergenic 40.0%
! GAACTGCATTGATGATACTC+TGG + chr6_4:70238633-70238652 Msa0994950:three_prime_UTR 40.0%
ATTCCAAAAAAGAAAGGGGC+TGG - chr6_4:70238726-70238745 None:intergenic 40.0%
GAGAAAGTGAGGGAAAACGA+TGG + chr6_4:70232295-70232314 Msa0994950:exon 45.0%
AATGGAAGTGGAAGACGAAG+AGG + chr6_4:70232361-70232380 Msa0994950:CDS 45.0%
CGAAAGCTCTTTCGCTTTCA+TGG + chr6_4:70232406-70232425 Msa0994950:CDS 45.0%
! CTGTACTCTGTCTAGAACAC+AGG + chr6_4:70232445-70232464 Msa0994950:CDS 45.0%
GCAACAAGCGCACTCATAAT+AGG + chr6_4:70232655-70232674 Msa0994950:intron 45.0%
CGTTAGTACCGTGTACATGT+CGG - chr6_4:70232789-70232808 None:intergenic 45.0%
! AGACATCGTCTTTGGAAACG+AGG + chr6_4:70232919-70232938 Msa0994950:intron 45.0%
! GACATCGTCTTTGGAAACGA+GGG + chr6_4:70232920-70232939 Msa0994950:intron 45.0%
AAGCTACGCAATAGACCCTT+TGG + chr6_4:70232946-70232965 Msa0994950:intron 45.0%
AGAATTGAGGCTACTCATGG+AGG + chr6_4:70233028-70233047 Msa0994950:intron 45.0%
!!! CATGGAGGTGCCTTTTACAA+AGG + chr6_4:70233043-70233062 Msa0994950:intron 45.0%
CTTTGCGCAAAACCACAAAG+TGG + chr6_4:70233081-70233100 Msa0994950:intron 45.0%
CCAAGATAGTGTCCACTTTG+TGG - chr6_4:70233096-70233115 None:intergenic 45.0%
CCACAAAGTGGACACTATCT+TGG + chr6_4:70233093-70233112 Msa0994950:intron 45.0%
TTGGAAATGTGGCTAGAGGT+CGG + chr6_4:70233112-70233131 Msa0994950:intron 45.0%
TCAGATTGACGATGTCTACG+GGG - chr6_4:70233188-70233207 None:intergenic 45.0%
GAGAACCAAAGCAAACATGC+TGG + chr6_4:70233787-70233806 Msa0994950:intron 45.0%
TCCCGCTAAAGCAGTTGATT+AGG + chr6_4:70233988-70234007 Msa0994950:intron 45.0%
CCCTAATCAACTGCTTTAGC+GGG - chr6_4:70233992-70234011 None:intergenic 45.0%
CCCGCTAAAGCAGTTGATTA+GGG + chr6_4:70233989-70234008 Msa0994950:intron 45.0%
AGATGACTGAAGTTCGCGTA+AGG - chr6_4:70234109-70234128 None:intergenic 45.0%
! TTTGCCATTTGCTTTGCTGC+TGG + chr6_4:70234233-70234252 Msa0994950:CDS 45.0%
TACTCCAGCAGCAAAGCAAA+TGG - chr6_4:70234240-70234259 None:intergenic 45.0%
TGGAGTAACCTGTACACTGT+TGG + chr6_4:70234253-70234272 Msa0994950:CDS 45.0%
! AGCATGGACTGTAAGATGGT+AGG - chr6_4:70234465-70234484 None:intergenic 45.0%
TAAATGGGCCAGTGTCAACT+GGG + chr6_4:70234900-70234919 Msa0994950:intron 45.0%
TCCTGCACAACCTGCATAAT+AGG + chr6_4:70235338-70235357 Msa0994950:intron 45.0%
TATGCCGAAGCCTATTATGC+AGG - chr6_4:70235351-70235370 None:intergenic 45.0%
TAACCTCCATACAAAGGTGG+TGG + chr6_4:70235566-70235585 Msa0994950:intron 45.0%
TCAATGCCACCACCTTTGTA+TGG - chr6_4:70235575-70235594 None:intergenic 45.0%
CACGAAGGAATAGAACATGG+CGG + chr6_4:70235615-70235634 Msa0994950:intron 45.0%
GTATCTCATTTGGTTGTGGG+CGG - chr6_4:70235744-70235763 None:intergenic 45.0%
!! TGGTGGATTACTTACGGAGA+TGG - chr6_4:70235814-70235833 None:intergenic 45.0%
CTAAAACTCCAACAGAGTGG+TGG - chr6_4:70235831-70235850 None:intergenic 45.0%
!! CCCCTTTGAAATCCTTAAGC+TGG + chr6_4:70235893-70235912 Msa0994950:intron 45.0%
!!! TCTTCTCCACCGTTTTTTGG+TGG - chr6_4:70236461-70236480 None:intergenic 45.0%
ACCAAAAAACGGTGGAGAAG+AGG + chr6_4:70236460-70236479 Msa0994950:intron 45.0%
AACAGTTCCTCAAACAGGAC+TGG - chr6_4:70236634-70236653 None:intergenic 45.0%
AGTCCTGTTTGAGGAACTGT+TGG + chr6_4:70236633-70236652 Msa0994950:intron 45.0%
GTCCTGTTTGAGGAACTGTT+GGG + chr6_4:70236634-70236653 Msa0994950:intron 45.0%
CTATCTTCTTTCCTTGGGTG+GGG + chr6_4:70236712-70236731 Msa0994950:intron 45.0%
AGATATGCACGACATACTGC+AGG + chr6_4:70236789-70236808 Msa0994950:intron 45.0%
GATATGCACGACATACTGCA+GGG + chr6_4:70236790-70236809 Msa0994950:intron 45.0%
! TTTTAATCTGGTCCTCTCCC+TGG + chr6_4:70237075-70237094 Msa0994950:intron 45.0%
TTGATCTGGCTATTGCATGC+TGG - chr6_4:70237159-70237178 None:intergenic 45.0%
GCAATAGCCAGATCAATCAG+TGG + chr6_4:70237163-70237182 Msa0994950:intron 45.0%
CAGACAATCTGTCTCACCAA+AGG - chr6_4:70237256-70237275 None:intergenic 45.0%
CATTCCTCATAGGTCCCAAA+AGG + chr6_4:70237453-70237472 Msa0994950:CDS 45.0%
! TGGAGTTTGGAGCACTAGTT+TGG + chr6_4:70237698-70237717 Msa0994950:CDS 45.0%
AAACCATGGACCTCGCAAAA+GGG - chr6_4:70238541-70238560 None:intergenic 45.0%
GTCCATGGTTTCAAGGATCA+TGG + chr6_4:70238550-70238569 Msa0994950:CDS 45.0%
! AAAAAAGAAAGGGGCTGGCA+AGG - chr6_4:70238721-70238740 None:intergenic 45.0%
!!! TTGCCAGCCCCTTTCTTTTT+TGG + chr6_4:70238720-70238739 Msa0994950:three_prime_UTR 45.0%
!! ACATAGTCGAAAGCACCACT+GGG - chr6_4:70238898-70238917 None:intergenic 45.0%
!! AAAATTATTATAAATAAAAG+TGG - chr6_4:70238125-70238144 None:intergenic 5.0%
GTTGAGACTAAGCGGCCAAA+GGG - chr6_4:70232964-70232983 None:intergenic 50.0%
AGTTGAGACTAAGCGGCCAA+AGG - chr6_4:70232965-70232984 None:intergenic 50.0%
TTTGGCCGCTTAGTCTCAAC+TGG + chr6_4:70232964-70232983 Msa0994950:intron 50.0%
TTGGCCGCTTAGTCTCAACT+GGG + chr6_4:70232965-70232984 Msa0994950:intron 50.0%
! GGTTTTGCGCAAAGCCCTTA+AGG - chr6_4:70233075-70233094 None:intergenic 50.0%
TGGAAATGTGGCTAGAGGTC+GGG + chr6_4:70233113-70233132 Msa0994950:intron 50.0%
CAGATTGACGATGTCTACGG+GGG - chr6_4:70233187-70233206 None:intergenic 50.0%
CGGCGCTACATAGTGATTGT+TGG + chr6_4:70233213-70233232 Msa0994950:intron 50.0%
TTTGTGCCCCTCATGAGTGT+TGG + chr6_4:70233389-70233408 Msa0994950:intron 50.0%
CGAGAATGTGGCCTATTTGG+AGG + chr6_4:70233745-70233764 Msa0994950:intron 50.0%
!! TGTTTTTCGGTAGGGGTTCC+AGG + chr6_4:70234698-70234717 Msa0994950:intron 50.0%
CTAAATGGGCCAGTGTCAAC+TGG + chr6_4:70234899-70234918 Msa0994950:intron 50.0%
GCCTATTATGCAGGTTGTGC+AGG - chr6_4:70235342-70235361 None:intergenic 50.0%
AAGTGGATGCCTGACGATGA+AGG - chr6_4:70235376-70235395 None:intergenic 50.0%
GGCATCCACTTCTCTTGAAC+AGG + chr6_4:70235385-70235404 Msa0994950:intron 50.0%
GGACTCCTGTTCAAGAGAAG+TGG - chr6_4:70235393-70235412 None:intergenic 50.0%
!! ACAGGTCAGTGTCTAGCTCT+TGG + chr6_4:70235456-70235475 Msa0994950:intron 50.0%
ATGCCACCACCTTTGTATGG+AGG - chr6_4:70235572-70235591 None:intergenic 50.0%
CGCCACGAAGGAATAGAACA+TGG + chr6_4:70235612-70235631 Msa0994950:intron 50.0%
CGCCATGTTCTATTCCTTCG+TGG - chr6_4:70235617-70235636 None:intergenic 50.0%
CATGGCGGCATAACGGTTAA+TGG + chr6_4:70235630-70235649 Msa0994950:intron 50.0%
CATTTGGTTGTGGGCGGAAA+TGG - chr6_4:70235738-70235757 None:intergenic 50.0%
GTTGACACCCCGCAACAAAA+TGG - chr6_4:70236055-70236074 None:intergenic 50.0%
!!! GCCTCTTCTCCACCGTTTTT+TGG - chr6_4:70236464-70236483 None:intergenic 50.0%
AGAAGAGGCTGACAAGCAAC+TGG + chr6_4:70236475-70236494 Msa0994950:intron 50.0%
CATTACCAGCATGGGAAGCT+CGG - chr6_4:70236520-70236539 None:intergenic 50.0%
GAGCTTCCCATGCTGGTAAT+GGG + chr6_4:70236519-70236538 Msa0994950:intron 50.0%
GTTCCTCAAACAGGACTGGA+GGG - chr6_4:70236630-70236649 None:intergenic 50.0%
AGTTCCTCAAACAGGACTGG+AGG - chr6_4:70236631-70236650 None:intergenic 50.0%
CTCCCAACAGTTCCTCAAAC+AGG - chr6_4:70236639-70236658 None:intergenic 50.0%
ACTGAATGTAACCCCACCCA+AGG - chr6_4:70236726-70236745 None:intergenic 50.0%
!! GGTAGAGATGAAGGCATCCA+GGG - chr6_4:70237095-70237114 None:intergenic 50.0%
!! AGGTAGAGATGAAGGCATCC+AGG - chr6_4:70237096-70237115 None:intergenic 50.0%
!!! CTTGCCTTTTGGGACCTATG+AGG - chr6_4:70237460-70237479 None:intergenic 50.0%
! TGCATTGATGTGCGTTGAGC+AGG + chr6_4:70237639-70237658 Msa0994950:intron 50.0%
! TGAGCTACATCCCTTTTGCG+AGG + chr6_4:70238528-70238547 Msa0994950:CDS 50.0%
GAAACCATGGACCTCGCAAA+AGG - chr6_4:70238542-70238561 None:intergenic 50.0%
TTGCGAGGTCCATGGTTTCA+AGG + chr6_4:70238543-70238562 Msa0994950:CDS 50.0%
AAGTGCAACGAAAGGACGAC+AGG - chr6_4:70238843-70238862 None:intergenic 50.0%
!! GACATAGTCGAAAGCACCAC+TGG - chr6_4:70238899-70238918 None:intergenic 50.0%
! AGAGGCACAAGCTGCTGCAT+TGG + chr6_4:70232379-70232398 Msa0994950:CDS 55.0%
!! GCACAGCACCGACATGTACA+CGG + chr6_4:70232778-70232797 Msa0994950:intron 55.0%
TGGCCGCTTAGTCTCAACTG+GGG + chr6_4:70232966-70232985 Msa0994950:intron 55.0%
AGCCCCCAGTTGAGACTAAG+CGG - chr6_4:70232972-70232991 None:intergenic 55.0%
AAATGTGGCTAGAGGTCGGG+AGG + chr6_4:70233116-70233135 Msa0994950:intron 55.0%
AATGTGGCTAGAGGTCGGGA+GGG + chr6_4:70233117-70233136 Msa0994950:intron 55.0%
! TTTTCGGTAGGGGTTCCAGG+TGG + chr6_4:70234701-70234720 Msa0994950:intron 55.0%
TTTCGGTAGGGGTTCCAGGT+GGG + chr6_4:70234702-70234721 Msa0994950:intron 55.0%
GTCACAGACCCAGTTGACAC+TGG - chr6_4:70234911-70234930 None:intergenic 55.0%
TACAACACTCCCCCTCAAGC+TGG + chr6_4:70234971-70234990 Msa0994950:intron 55.0%
CGGCATAAGCCTTCATCGTC+AGG + chr6_4:70235364-70235383 Msa0994950:intron 55.0%
TTGAACAGGAGTCCTCTCCC+TGG + chr6_4:70235399-70235418 Msa0994950:intron 55.0%
CTCAAAGTTGCTCCAGGGAG+AGG - chr6_4:70235414-70235433 None:intergenic 55.0%
AATCATGGCAGTCGCCACGA+AGG + chr6_4:70235600-70235619 Msa0994950:intron 55.0%
!! AGCATGGGAAGCTCGGTGTT+TGG - chr6_4:70236513-70236532 None:intergenic 55.0%
AAACACCGAGCTTCCCATGC+TGG + chr6_4:70236512-70236531 Msa0994950:intron 55.0%
CGAGCTTCCCATGCTGGTAA+TGG + chr6_4:70236518-70236537 Msa0994950:intron 55.0%
ACAGGACTGGAGGGAACATG+TGG - chr6_4:70236621-70236640 None:intergenic 55.0%
GTTCCCTCCAGTCCTGTTTG+AGG + chr6_4:70236624-70236643 Msa0994950:intron 55.0%
GGACATATGGGCTCCACACA+TGG + chr6_4:70236958-70236977 Msa0994950:intron 55.0%
!! AGATGAAGGCATCCAGGGAG+AGG - chr6_4:70237090-70237109 None:intergenic 55.0%
AGCCAGATCAATCAGTGGGG+AGG + chr6_4:70237168-70237187 Msa0994950:intron 55.0%
! TGCCTCCCCACTGATTGATC+TGG - chr6_4:70237173-70237192 None:intergenic 55.0%
GGCAGCACAGCATTCCTCAT+AGG + chr6_4:70237443-70237462 Msa0994950:intron 55.0%
TCAGTTCGGTACTGCCATGC+TGG - chr6_4:70237897-70237916 None:intergenic 55.0%
! CATCCCTTTTGCGAGGTCCA+TGG + chr6_4:70238535-70238554 Msa0994950:CDS 55.0%
GGCCGCTTAGTCTCAACTGG+GGG + chr6_4:70232967-70232986 Msa0994950:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 70232099 70238969 70232099 ID=Msa0994950;Name=Msa0994950
chr6_4 mRNA 70232099 70238969 70232099 ID=Msa0994950-mRNA-1;Parent=Msa0994950;Name=Msa0994950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=215|1|1|1|1|1|6|371|178
chr6_4 exon 70232099 70232466 70232099 ID=Msa0994950-mRNA-1:exon:13064;Parent=Msa0994950-mRNA-1
chr6_4 exon 70234221 70234274 70234221 ID=Msa0994950-mRNA-1:exon:13065;Parent=Msa0994950-mRNA-1
chr6_4 exon 70234477 70234550 70234477 ID=Msa0994950-mRNA-1:exon:13066;Parent=Msa0994950-mRNA-1
chr6_4 exon 70237448 70237565 70237448 ID=Msa0994950-mRNA-1:exon:13067;Parent=Msa0994950-mRNA-1
chr6_4 exon 70237661 70237719 70237661 ID=Msa0994950-mRNA-1:exon:13068;Parent=Msa0994950-mRNA-1
chr6_4 exon 70238520 70238969 70238520 ID=Msa0994950-mRNA-1:exon:13069;Parent=Msa0994950-mRNA-1
chr6_4 five_prime_UTR 70232099 70232313 70232099 ID=Msa0994950-mRNA-1:five_prime_utr;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70232314 70232466 70232314 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70234221 70234274 70234221 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70234477 70234550 70234477 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70237448 70237565 70237448 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70237661 70237719 70237661 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 CDS 70238520 70238598 70238520 ID=Msa0994950-mRNA-1:cds;Parent=Msa0994950-mRNA-1
chr6_4 three_prime_UTR 70238599 70238969 70238599 ID=Msa0994950-mRNA-1:three_prime_utr;Parent=Msa0994950-mRNA-1
Gene Sequence

>Msa0994950

ATGGAAAAAATGAACAAAGCCTTCGAGAAAGTGAAAATAATGGTGGGAATGGAAGTGGAAGACGAAGAGGCACAAGCTGCTGCATTGGAAAACGAAAGCTCTTTCGCTTTCATGGATGATTTCAACCGCAACTGTACTCTGTCTAGAACACAGAGATTATATGGTTTTGCCATTTGCTTTGCTGCTGGAGTAACCTGTACACTGTTGTCCATGCTTGTTTTCCTCAAACCAATCAAGTTTGGGATAACATTCACTCTTGGAAATTTGCTTTCACTGGGAAGCACAGCATTCCTCATAGGTCCCAAAAGGCAAGTATCGATGATGCTTGATCCTGTTCGTATTTATGCAACAGCCATATACATCGCAAGTATGATAATTGCGTTGTTTTGTGCACTTTATGTTCATAACAAATTACTGACATTTCTTGCGATTATCTTGGAGTTTGGAGCACTAGTTTGGTATAGCTTGAGCTACATCCCTTTTGCGAGGTCCATGGTTTCAAGGATCATGGTTTCATGCTTTGACACAGAATTTTAG

Protein sequence

>Msa0994950

MEKMNKAFEKVKIMVGMEVEDEEAQAAALENESSFAFMDDFNRNCTLSRTQRLYGFAICFAAGVTCTLLSMLVFLKPIKFGITFTLGNLLSLGSTAFLIGPKRQVSMMLDPVRIYATAIYIASMIIALFCALYVHNKLLTFLAIILEFGALVWYSLSYIPFARSMVSRIMVSCFDTEF*