AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168070 MtrunA17_Chr1g0184231 94.745 666 35 0 1 666 1 666 0.0 1315
Msa0168070 MtrunA17_Chr7g0261061 57.532 697 230 8 1 665 1 663 0.0 709
Msa0168070 MtrunA17_Chr4g0025571 53.608 194 84 3 466 659 707 894 3.79e-55 202
Msa0168070 MtrunA17_Chr4g0025571 30.986 213 116 7 1 186 1 209 4.42e-20 95.1
Msa0168070 MtrunA17_Chr2g0322001 51.546 194 88 3 466 659 668 855 1.34e-53 197
Msa0168070 MtrunA17_Chr2g0322001 30.047 213 113 7 1 184 1 206 2.05e-20 96.3
Msa0168070 MtrunA17_Chr1g0188861 43.548 186 98 3 482 664 573 754 4.86e-42 163
Msa0168070 MtrunA17_Chr1g0188861 32.515 163 75 4 1 155 5 140 7.82e-15 78.2
Msa0168070 MtrunA17_Chr7g0239641 44.134 179 91 4 472 650 497 666 9.38e-38 149
Msa0168070 MtrunA17_Chr7g0239641 32.821 195 89 4 2 164 3 187 5.55e-24 107
Msa0168070 MtrunA17_Chr2g0317011 27.419 186 84 7 5 155 20 189 3.68e-13 72.0
Msa0168070 MtrunA17_Chr5g0413871 30.049 203 84 8 5 155 14 210 6.01e-13 70.9
Msa0168070 MtrunA17_Chr1g0152981 28.426 197 78 9 5 152 12 194 5.20e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168070 AT2G31280.1 41.012 751 319 21 1 662 1 716 1.90e-148 448
Msa0168070 AT2G31280.3 40.104 768 319 22 1 662 1 733 4.41e-144 437
Msa0168070 AT2G31280.2 39.014 710 303 20 6 638 32 688 1.09e-120 376
Msa0168070 AT1G06150.2 49.757 412 180 10 261 663 341 734 1.20e-102 329
Msa0168070 AT1G06150.2 49.412 170 64 3 1 157 1 161 6.02e-40 157
Msa0168070 AT1G06150.1 49.757 412 178 11 261 663 341 732 6.19e-101 325
Msa0168070 AT1G06150.1 49.412 170 64 3 1 157 1 161 6.11e-40 157
Msa0168070 AT2G27230.2 39.744 312 157 8 352 659 336 620 2.63e-51 189
Msa0168070 AT2G27230.2 31.746 189 102 5 1 174 1 177 1.23e-20 97.1
Msa0168070 AT2G27230.1 39.744 312 157 8 352 659 336 620 2.63e-51 189
Msa0168070 AT2G27230.1 31.746 189 102 5 1 174 1 177 1.23e-20 97.1
Msa0168070 AT1G64625.3 45.652 184 83 2 476 659 327 493 2.53e-45 169
Msa0168070 AT1G64625.3 33.571 140 59 3 1 140 1 106 2.02e-14 77.0
Msa0168070 AT1G64625.2 45.652 184 83 2 476 659 341 507 4.45e-45 169
Msa0168070 AT1G64625.2 33.333 150 60 4 1 140 1 120 7.38e-14 75.1
Msa0168070 AT1G64625.1 45.652 184 83 2 476 659 351 517 4.53e-45 169
Msa0168070 AT1G64625.1 32.484 157 62 5 1 140 1 130 9.22e-13 71.6
Msa0168070 AT1G64625.4 56.977 86 32 1 476 561 341 421 2.75e-24 106
Msa0168070 AT1G64625.4 33.333 150 60 4 1 140 1 120 2.32e-14 76.3
Msa0168070 AT3G15240.2 28.191 188 85 6 5 155 34 208 5.74e-14 74.3
Msa0168070 AT5G53900.2 26.882 186 92 6 5 155 21 197 4.56e-13 72.0

Find 193 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCAGCATACTTTATTTA+AGG 0.129093 1_4:-50333376 None:intergenic
TGTATGAAATTGAGTGTTTA+AGG 0.160000 1_4:-50331590 None:intergenic
ATTTATAATAACCCTTTATT+TGG 0.175519 1_4:+50332017 Msa0168070:five_prime_UTR
GAAAGAAAGTGTAAAGTTTA+AGG 0.181871 1_4:-50331524 None:intergenic
AAAATTGTGAACTGAGTAAA+AGG 0.202438 1_4:-50331552 None:intergenic
TGGGAAGAATCACAATTATC+AGG 0.237556 1_4:-50332873 None:intergenic
CTCCCAAGACTTCTTTGCTT+GGG 0.244686 1_4:-50336816 None:intergenic
CTTTAACACCCTCCAAATAA+AGG 0.255312 1_4:-50332029 None:intergenic
TGATGGACTTGTTAAATCTT+TGG 0.262539 1_4:-50334485 None:intergenic
GAAAGAAAAGCTCACTGTTT+TGG 0.264233 1_4:-50331429 None:intergenic
ATCTCGTCCGGAACATCTTT+TGG 0.269914 1_4:+50334732 Msa0168070:CDS
TTTGGAGGGTGTTAAAGTTT+TGG 0.281930 1_4:+50332035 Msa0168070:five_prime_UTR
CTACAATATCATTATTACTA+TGG 0.303371 1_4:-50334777 None:intergenic
TATGTAAATTTCTGTTGTTT+TGG 0.304838 1_4:-50336630 None:intergenic
ACTTAAAGCCTCCATGAAAT+TGG 0.308928 1_4:-50336884 None:intergenic
TCTTAGTAGTTGATGCAAAT+TGG 0.311091 1_4:-50332089 None:intergenic
GGGTAGGGATAGGTTGTTAT+TGG 0.323501 1_4:+50331819 Msa0168070:five_prime_UTR
CATCATAGTTTGAGTTTGTC+AGG 0.324738 1_4:+50334943 Msa0168070:CDS
ATTGGAAGTATGCTATCTTT+TGG 0.326772 1_4:+50332131 Msa0168070:CDS
CTTCTGCTATCTCAAGAAAA+TGG 0.337897 1_4:-50336329 None:intergenic
AATTTCAAGCCCCTCGTGTT+TGG 0.340965 1_4:-50334266 None:intergenic
GTTGGACAGGTAGCTGTTAC+TGG 0.341561 1_4:+50333108 Msa0168070:CDS
CTCTGATTATCAACAACAAC+AGG 0.341637 1_4:+50336091 Msa0168070:CDS
AGCCTTCTGAATTAATATTT+CGG 0.342951 1_4:-50334879 None:intergenic
TCTATTCGTGATCACACATT+AGG 0.346800 1_4:+50334097 Msa0168070:CDS
CTTCTTTGCTTGGGGAAAGC+AGG 0.352198 1_4:-50336807 None:intergenic
GAATTTGAGGTTCGAAGGTT+GGG 0.363573 1_4:+50331773 Msa0168070:five_prime_UTR
GACGGGTGAAACACTTGATA+TGG 0.366173 1_4:+50334171 Msa0168070:CDS
TCACACATCCTTTCATTTGA+AGG 0.372706 1_4:-50334370 None:intergenic
CAAGATACCTTTGCTCCGTT+TGG 0.374894 1_4:-50335156 None:intergenic
TTTCTGCTTTCTCTTGCTTT+CGG 0.376048 1_4:-50331398 None:intergenic
CAGCATGCTTAGTAACGCTT+TGG 0.376303 1_4:-50335339 None:intergenic
CCGTATCATGTATATTCGTT+AGG 0.377911 1_4:+50332981 Msa0168070:CDS
AGTTGTCTGTCCCTTGGTCT+AGG 0.381960 1_4:-50335096 None:intergenic
GTGTGTTATGTTTCACGCTT+TGG 0.383458 1_4:-50334138 None:intergenic
ACTTGGTAAACACAACAATA+TGG 0.387082 1_4:-50337011 None:intergenic
GCCTTTGTTTGGATACTGAT+TGG 0.393403 1_4:+50332113 Msa0168070:CDS
ACTGATCCAAGACCGTATTA+AGG 0.395166 1_4:+50335116 Msa0168070:CDS
TTTAACACCCTCCAAATAAA+GGG 0.396110 1_4:-50332028 None:intergenic
ACTACTAAGAAGCCTTTGTT+TGG 0.398957 1_4:+50332102 Msa0168070:CDS
GTAGAAAATCTTAGTAAGAA+TGG 0.406604 1_4:+50336167 Msa0168070:CDS
TCTCCCAAGACTTCTTTGCT+TGG 0.415830 1_4:-50336817 None:intergenic
TCATTATGAACAGAAACTTC+AGG 0.416026 1_4:-50334856 None:intergenic
TCATGAATGCGTGGTGCTCT+TGG 0.419667 1_4:-50336692 None:intergenic
CGTATCATGTATATTCGTTA+GGG 0.420977 1_4:+50332982 Msa0168070:CDS
TTAACTCCTTAATACGGTCT+TGG 0.421661 1_4:-50335122 None:intergenic
AGCAGAAGCCGTAAGAAGCT+TGG 0.422035 1_4:+50336344 Msa0168070:CDS
AACTGCGCAGTTGCATCATA+TGG 0.422500 1_4:+50336049 Msa0168070:intron
GTATGAAATTGAGTGTTTAA+GGG 0.427711 1_4:-50331589 None:intergenic
ATTATTACTATGGCAAACTT+TGG 0.428962 1_4:-50334767 None:intergenic
CAACAGAAATTTACATAGAC+TGG 0.430239 1_4:+50336636 Msa0168070:CDS
CGTCAGTCCCAAGCTTCTTA+CGG 0.431906 1_4:-50336352 None:intergenic
TGGATCAGTTGTCTGTCCCT+TGG 0.434072 1_4:-50335102 None:intergenic
TTCCCCAAGCAAAGAAGTCT+TGG 0.434452 1_4:+50336813 Msa0168070:three_prime_UTR
CTTGAAATTGACAGCGATCA+AGG 0.439876 1_4:+50334280 Msa0168070:CDS
TAGAAAATCTTAGTAAGAAT+GGG 0.442335 1_4:+50336168 Msa0168070:CDS
GTTCTGAGAGCACATACTTT+GGG 0.443847 1_4:-50332892 None:intergenic
AGAATTTGAGGTTCGAAGGT+TGG 0.447143 1_4:+50331772 Msa0168070:five_prime_UTR
GTGCAGGACACAATGGTCTC+TGG 0.448631 1_4:+50334826 Msa0168070:CDS
GTGGAAGAAGGTGAAGAAGA+TGG 0.448644 1_4:+50332063 Msa0168070:exon
GACGAGATTCAAAAGTCAAT+TGG 0.450977 1_4:-50334717 None:intergenic
CTAGGCCAGGTGAAAGTTGT+AGG 0.452487 1_4:+50335073 Msa0168070:CDS
TATAATAACCCTTTATTTGG+AGG 0.454693 1_4:+50332020 Msa0168070:five_prime_UTR
TGTTCTGAGAGCACATACTT+TGG 0.455292 1_4:-50332893 None:intergenic
CCACTTGGAGTTGTTCAACT+TGG 0.456296 1_4:+50333351 Msa0168070:CDS
CGGTCGGACCGCCATTAAAA+CGG 0.458939 1_4:+50331845 Msa0168070:five_prime_UTR
TTGGGAGAAGGAAACTTGTT+GGG 0.466698 1_4:+50336832 Msa0168070:three_prime_UTR
CGCTTTGGATTTGACTAGGA+AGG 0.470186 1_4:-50334123 None:intergenic
CTTGGGAGAAGGAAACTTGT+TGG 0.472420 1_4:+50336831 Msa0168070:three_prime_UTR
GTTCTCTTAACTCCTTAATA+CGG 0.473917 1_4:-50335128 None:intergenic
GTTCAGAAGACCTCTCAAAC+TGG 0.474775 1_4:-50335026 None:intergenic
TTCTTTGCTTGGGGAAAGCA+GGG 0.475732 1_4:-50336806 None:intergenic
GCAGAAGCCGTAAGAAGCTT+GGG 0.478373 1_4:+50336345 Msa0168070:CDS
AGGAAATTTCAATGTGTATG+AGG 0.478639 1_4:-50334569 None:intergenic
CCGCCATTAAAACGGCGAGC+AGG 0.478662 1_4:+50331853 Msa0168070:five_prime_UTR
CATATGGAAAATGACATTCA+TGG 0.481714 1_4:+50336065 Msa0168070:CDS
GTAACGCCCTTCCAATGTCC+TGG 0.482137 1_4:+50334193 Msa0168070:CDS
TCCTGTTTCTACAGTATGGT+TGG 0.484140 1_4:+50333090 Msa0168070:intron
TTTCTACAGTATGGTTGGAC+AGG 0.486471 1_4:+50333095 Msa0168070:intron
TCCCCAAGCAAAGAAGTCTT+GGG 0.486968 1_4:+50336814 Msa0168070:three_prime_UTR
ATTGAAATTGCAAGCTTCCA+TGG 0.489226 1_4:-50331682 None:intergenic
TATTAAGGAGTTAAGAGAAC+TGG 0.491639 1_4:+50335131 Msa0168070:CDS
AAGTGAGTGAGAGGTGTGAT+GGG 0.491855 1_4:+50331799 Msa0168070:five_prime_UTR
AGGATCCTCACCTTAAAAGA+TGG 0.491951 1_4:-50333177 None:intergenic
CGCCATTAAAACGGCGAGCA+GGG 0.495030 1_4:+50331854 Msa0168070:five_prime_UTR
ACAACAACAGGGTTCAAGTT+GGG 0.495964 1_4:+50336103 Msa0168070:CDS
ATGTGTGAAGGGAACAATAA+TGG 0.497231 1_4:+50334385 Msa0168070:CDS
ATAGAGGAAGCTAAAGCAAA+GGG 0.498802 1_4:+50331908 Msa0168070:five_prime_UTR
TAAAACGGCGAGCAGGGTTG+AGG 0.498874 1_4:+50331860 Msa0168070:five_prime_UTR
TCCCAAGACTTCTTTGCTTG+GGG 0.500375 1_4:-50336815 None:intergenic
GAGTGAGAGGTGTGATGGGT+AGG 0.500760 1_4:+50331803 Msa0168070:five_prime_UTR
GGTAAACACAACAATATGGT+TGG 0.502494 1_4:-50337007 None:intergenic
TGGAAGAAGGTGAAGAAGAT+GGG 0.503602 1_4:+50332064 Msa0168070:exon
TACACATTGAAATTTCCTGC+TGG 0.505845 1_4:+50334574 Msa0168070:CDS
GAGACTAGGGACTAGGGACT+AGG 0.509632 1_4:+50331987 Msa0168070:five_prime_UTR
CTTGGGGAAAGCAGGGAGGA+AGG 0.511468 1_4:-50336799 None:intergenic
TGACATCGATTGAAGCAAGA+TGG 0.514120 1_4:-50334305 None:intergenic
AAATTGTGAACTGAGTAAAA+GGG 0.516260 1_4:-50331551 None:intergenic
GAAGTGAGTGAGAGGTGTGA+TGG 0.517684 1_4:+50331798 Msa0168070:five_prime_UTR
ATCAAGTGTTTCACCCGTCA+TGG 0.518290 1_4:-50334167 None:intergenic
ATAATAACCCTTTATTTGGA+GGG 0.518524 1_4:+50332021 Msa0168070:five_prime_UTR
TTACTCTCTTTGAGAAAACC+TGG 0.521989 1_4:-50334622 None:intergenic
TTGAAGAATTTGAGGTTCGA+AGG 0.524148 1_4:+50331768 Msa0168070:five_prime_UTR
GTTGGGAGGAAGTGAGTGAG+AGG 0.526894 1_4:+50331790 Msa0168070:five_prime_UTR
CTGACAAACTCAAACTATGA+TGG 0.527690 1_4:-50334942 None:intergenic
GTGGTGGTGGGAGAGAGACT+AGG 0.528783 1_4:+50331973 Msa0168070:five_prime_UTR
ATGTATATTCGTTAGGGGAA+GGG 0.529135 1_4:+50332988 Msa0168070:CDS
CCTAACGAATATACATGATA+CGG 0.532424 1_4:-50332981 None:intergenic
GTGCAGTATTGATTCACTGT+TGG 0.539514 1_4:+50335288 Msa0168070:intron
ACTGCTTCCAAAAGATGTTC+CGG 0.539659 1_4:-50334739 None:intergenic
GGGAAGAATCACAATTATCA+GGG 0.539821 1_4:-50332872 None:intergenic
AGGAGGAAACAAGCTGGAAG+AGG 0.540000 1_4:+50331880 Msa0168070:five_prime_UTR
TAATGATATTGTAGATAATG+AGG 0.540266 1_4:+50334786 Msa0168070:CDS
ACAGGGTTCAAGTTGGGCAA+TGG 0.540297 1_4:+50336109 Msa0168070:CDS
AGTGAGAGGTGTGATGGGTA+GGG 0.540634 1_4:+50331804 Msa0168070:five_prime_UTR
ACCTTGGAGCAGATCTATGT+TGG 0.541880 1_4:+50332915 Msa0168070:CDS
GCTGGAAGAGGGTCTTATAG+AGG 0.541887 1_4:+50331892 Msa0168070:five_prime_UTR
CATGTATATTCGTTAGGGGA+AGG 0.541965 1_4:+50332987 Msa0168070:CDS
GCAGAGAATACGAAACAAGT+AGG 0.544022 1_4:+50334340 Msa0168070:CDS
GGGAGAGAGACTAGGGACTA+GGG 0.544380 1_4:+50331981 Msa0168070:five_prime_UTR
TCAACCATCTCATATTAAAG+AGG 0.552455 1_4:+50334912 Msa0168070:CDS
AGACTAGGGACTAGGGACTA+GGG 0.553599 1_4:+50331988 Msa0168070:five_prime_UTR
AACAACAACAGGGTTCAAGT+TGG 0.556005 1_4:+50336102 Msa0168070:CDS
ATCATAGTTTGAGTTTGTCA+GGG 0.556500 1_4:+50334944 Msa0168070:CDS
ATATCCTCTTTAATATGAGA+TGG 0.557881 1_4:-50334916 None:intergenic
TTGGGGAAAGCAGGGAGGAA+GGG 0.558206 1_4:-50336798 None:intergenic
TTACATGAAGCACTTGGACC+AGG 0.559643 1_4:+50334604 Msa0168070:CDS
TACATAGACTGGACATCTTG+TGG 0.559870 1_4:+50336647 Msa0168070:CDS
TTTGAGGTTCGAAGGTTGGG+AGG 0.560314 1_4:+50331776 Msa0168070:five_prime_UTR
TGGTGGTGGGAGAGAGACTA+GGG 0.560673 1_4:+50331974 Msa0168070:five_prime_UTR
GGATAGGTTGTTATTGGCAA+CGG 0.562235 1_4:+50331825 Msa0168070:five_prime_UTR
GACCGAAATATTAATTCAGA+AGG 0.563885 1_4:+50334877 Msa0168070:CDS
TTCACGCTTTGGATTTGACT+AGG 0.564504 1_4:-50334127 None:intergenic
CAAATGAAAGGATGTGTGAA+GGG 0.564926 1_4:+50334374 Msa0168070:CDS
AATTGTGAACTGAGTAAAAG+GGG 0.565128 1_4:-50331550 None:intergenic
TCAAGTTGGGCAATGGAGGT+AGG 0.566298 1_4:+50336116 Msa0168070:CDS
AGCAAAGAAGTCTTGGGAGA+AGG 0.568917 1_4:+50336820 Msa0168070:three_prime_UTR
GGATGAAACCTTCAAATGAA+AGG 0.568936 1_4:+50334362 Msa0168070:CDS
TCAGAAAATGACTATTGATG+TGG 0.577639 1_4:+50334243 Msa0168070:CDS
TGGGAGAGAGACTAGGGACT+AGG 0.579198 1_4:+50331980 Msa0168070:five_prime_UTR
TTGCTTGCAGGATCTTGACA+TGG 0.580291 1_4:+50332829 Msa0168070:intron
TCATGTAACTCATAACCAGC+AGG 0.580707 1_4:-50334589 None:intergenic
AACGGCGAGCAGGGTTGAGG+AGG 0.581208 1_4:+50331863 Msa0168070:five_prime_UTR
CTAGGCCTACAACTTTCACC+TGG 0.582898 1_4:-50335078 None:intergenic
AACACACAGAAAACCATGAC+GGG 0.583428 1_4:+50334154 Msa0168070:CDS
GACTGCAATAATTGAACAAG+CGG 0.583493 1_4:-50336670 None:intergenic
GGGTTCAAGTTGGGCAATGG+AGG 0.584395 1_4:+50336112 Msa0168070:CDS
GAGGTGTGATGGGTAGGGAT+AGG 0.587096 1_4:+50331809 Msa0168070:five_prime_UTR
GGGTTGAGGAGGAAACAAGC+TGG 0.587284 1_4:+50331874 Msa0168070:five_prime_UTR
TCAAATGAAAGGATGTGTGA+AGG 0.588450 1_4:+50334373 Msa0168070:CDS
TAACGCCCTTCCAATGTCCT+GGG 0.589847 1_4:+50334194 Msa0168070:CDS
TATAGAGGAAGCTAAAGCAA+AGG 0.591156 1_4:+50331907 Msa0168070:five_prime_UTR
CAGAGAATACGAAACAAGTA+GGG 0.591572 1_4:+50334341 Msa0168070:CDS
CTGTTGTTGTTGATAATCAG+AGG 0.593214 1_4:-50336090 None:intergenic
TTAAGAGAACTGGTGCCAAA+CGG 0.593259 1_4:+50335141 Msa0168070:CDS
TTAGCTTATATCTGAAGACA+TGG 0.601138 1_4:-50331641 None:intergenic
ACTGGTGCCAAACGGAGCAA+AGG 0.604316 1_4:+50335149 Msa0168070:CDS
AAATTGGTATCAAAATGCTA+AGG 0.610916 1_4:-50336868 None:intergenic
TATGAGTTACATGAAGCACT+TGG 0.610930 1_4:+50334598 Msa0168070:CDS
TATTGATGTGGCCAAACACG+AGG 0.617153 1_4:+50334255 Msa0168070:CDS
TGCTTGCAGGATCTTGACAT+GGG 0.618674 1_4:+50332830 Msa0168070:intron
AGGTTGTTATTGGCAACGGT+CGG 0.619266 1_4:+50331829 Msa0168070:five_prime_UTR
TCCAATCAGTATCCAAACAA+AGG 0.620757 1_4:-50332114 None:intergenic
TTGAGTTTGTCAGGGATCTG+CGG 0.621537 1_4:+50334952 Msa0168070:CDS
GGAGGAAACAAGCTGGAAGA+GGG 0.623624 1_4:+50331881 Msa0168070:five_prime_UTR
AAAGTTGTAGGCCTAGACCA+AGG 0.627816 1_4:+50335085 Msa0168070:CDS
TACATCAGTGCAGGACACAA+TGG 0.629927 1_4:+50334819 Msa0168070:CDS
AATGCAGGTTGGTGAAGACA+TGG 0.636281 1_4:+50334042 Msa0168070:intron
AACTGGTTACTACACGAGCT+AGG 0.639086 1_4:-50335009 None:intergenic
GAATGGGCAGATGCTTGTTG+AGG 0.640182 1_4:+50336184 Msa0168070:CDS
GTCGTAGCAGTACTACCACT+TGG 0.641686 1_4:+50333336 Msa0168070:CDS
CTGTTACTGGAAAACATCAG+TGG 0.641892 1_4:+50333121 Msa0168070:CDS
TCCAACATAGATCTGCTCCA+AGG 0.643426 1_4:-50332916 None:intergenic
AGTTGGGCAATGGAGGTAGG+AGG 0.643833 1_4:+50336119 Msa0168070:CDS
CGTGTAGTAACCAGTTTGAG+AGG 0.651078 1_4:+50335016 Msa0168070:CDS
AAGTTGTAGGCCTAGACCAA+GGG 0.652681 1_4:+50335086 Msa0168070:CDS
TCGCAACAGATAATCCTAGA+GGG 0.655424 1_4:-50332953 None:intergenic
GGAGAAGGAAACTTGTTGGG+AGG 0.656099 1_4:+50336835 Msa0168070:three_prime_UTR
TTCGCAACAGATAATCCTAG+AGG 0.664107 1_4:-50332954 None:intergenic
TTGCAGGATCTTGACATGGG+AGG 0.664946 1_4:+50332833 Msa0168070:intron
TAACACACAGAAAACCATGA+CGG 0.666602 1_4:+50334153 Msa0168070:CDS
TGCAGGTTGGTGAAGACATG+GGG 0.669819 1_4:+50334044 Msa0168070:intron
ATGCAGGTTGGTGAAGACAT+GGG 0.672643 1_4:+50334043 Msa0168070:intron
ATTGATGTGGCCAAACACGA+GGG 0.677054 1_4:+50334256 Msa0168070:CDS
CCAAGTTGAACAACTCCAAG+TGG 0.686515 1_4:-50333351 None:intergenic
TTTGCTTGGGGAAAGCAGGG+AGG 0.694219 1_4:-50336803 None:intergenic
TTGATGTGGCCAAACACGAG+GGG 0.694860 1_4:+50334257 Msa0168070:CDS
TATGTGCTCTCAGAACACCT+TGG 0.696188 1_4:+50332899 Msa0168070:CDS
AAACATTTATCATGAATGCG+TGG 0.706605 1_4:-50336701 None:intergenic
CATGCTACAGATGCTCTGTG+AGG 0.715737 1_4:+50336299 Msa0168070:intron
GTATCATGTATATTCGTTAG+GGG 0.726980 1_4:+50332983 Msa0168070:CDS
TCTGATTATCAACAACAACA+GGG 0.741738 1_4:+50336092 Msa0168070:CDS
AACGGTGCAAGTGAAGCTCG+TGG 0.750508 1_4:+50336381 Msa0168070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATAAAGAATAA+TGG - chr1_4:50333482-50333501 None:intergenic 10.0%
!! ATATTTGACATAAAATATAA+AGG + chr1_4:50333773-50333792 Msa0168070:intron 10.0%
!! ATTGATGTTTATAAAATTAA+GGG - chr1_4:50335877-50335896 None:intergenic 10.0%
!! TATTGATGTTTATAAAATTA+AGG - chr1_4:50335878-50335897 None:intergenic 10.0%
!!! CAAAGATTATATAAATTTTC+TGG + chr1_4:50331474-50331493 Msa0168070:five_prime_UTR 15.0%
!!! AAAATTGTATTTTTAATCCA+TGG + chr1_4:50331665-50331684 Msa0168070:five_prime_UTR 15.0%
!! ATTTATAATAACCCTTTATT+TGG + chr1_4:50332017-50332036 Msa0168070:five_prime_UTR 15.0%
!! AAGAAATTTAAGCATTAAAA+GGG - chr1_4:50333417-50333436 None:intergenic 15.0%
!! AATTAGGAGATTATATAAAT+GGG - chr1_4:50333580-50333599 None:intergenic 15.0%
!! AAATTAGGAGATTATATAAA+TGG - chr1_4:50333581-50333600 None:intergenic 15.0%
!! TTTATATAATCTCCTAATTT+CGG + chr1_4:50333581-50333600 Msa0168070:intron 15.0%
!! TTTGCTTATTATGTATAATA+AGG - chr1_4:50333657-50333676 None:intergenic 15.0%
!!! TATGTCAAATATATTAGTTT+TGG - chr1_4:50333765-50333784 None:intergenic 15.0%
!!! AAATGCCATTATTTTATTAA+CGG - chr1_4:50335478-50335497 None:intergenic 15.0%
!!! AATTTTCAAAACATTGTTTT+CGG - chr1_4:50335766-50335785 None:intergenic 15.0%
!! TAATAATAACATAGAAGTAA+TGG + chr1_4:50336501-50336520 Msa0168070:intron 15.0%
!!! TATTTTTGAAAATTCTCATC+TGG + chr1_4:50331613-50331632 Msa0168070:five_prime_UTR 20.0%
!!! ATTTTTGAAAATTCTCATCT+GGG + chr1_4:50331614-50331633 Msa0168070:five_prime_UTR 20.0%
!!! AGAATTTTTTGAAGAATTTG+AGG + chr1_4:50331760-50331779 Msa0168070:five_prime_UTR 20.0%
!! AAACATTATGGAAATTAGAA+AGG - chr1_4:50332298-50332317 None:intergenic 20.0%
!! TCTTAGATATTGAATTAAGA+AGG + chr1_4:50332392-50332411 Msa0168070:intron 20.0%
!! CTTAGATATTGAATTAAGAA+GGG + chr1_4:50332393-50332412 Msa0168070:intron 20.0%
!!! TCAAGAATCAATTTTAGATT+TGG + chr1_4:50332429-50332448 Msa0168070:intron 20.0%
!!! CAATTTTAGATTTGGTTTTA+AGG + chr1_4:50332437-50332456 Msa0168070:intron 20.0%
!! CATATGAAATTTAACTCATT+GGG - chr1_4:50332777-50332796 None:intergenic 20.0%
!! ACATATGAAATTTAACTCAT+TGG - chr1_4:50332778-50332797 None:intergenic 20.0%
!!! CTTATCTTAACATGTTTTAT+TGG + chr1_4:50332798-50332817 Msa0168070:intron 20.0%
!! CAAGAAATTTAAGCATTAAA+AGG - chr1_4:50333418-50333437 None:intergenic 20.0%
!!! TAAAGGCATATAATTTTTAG+TGG + chr1_4:50333790-50333809 Msa0168070:intron 20.0%
!! ATGTAGTTGAATAAATTTGA+CGG + chr1_4:50333925-50333944 Msa0168070:intron 20.0%
!!! ATTAACATTTTGCTAACAAA+TGG - chr1_4:50333996-50334015 None:intergenic 20.0%
!!! AAGAGAGTAAATATTTTGAT+TGG + chr1_4:50334635-50334654 Msa0168070:CDS 20.0%
!! CTACAATATCATTATTACTA+TGG - chr1_4:50334780-50334799 None:intergenic 20.0%
!! TAATGATATTGTAGATAATG+AGG + chr1_4:50334786-50334805 Msa0168070:CDS 20.0%
!!! AATGCCATTATTTTATTAAC+GGG - chr1_4:50335477-50335496 None:intergenic 20.0%
!! AAACATCAATAAGTATGAAA+TGG + chr1_4:50335887-50335906 Msa0168070:intron 20.0%
!! TAGAAAATCTTAGTAAGAAT+GGG + chr1_4:50336168-50336187 Msa0168070:CDS 20.0%
!! CGTAAAACTAATATACATTA+TGG + chr1_4:50336554-50336573 Msa0168070:intron 20.0%
!!! TATGTAAATTTCTGTTGTTT+TGG - chr1_4:50336633-50336652 None:intergenic 20.0%
!! AACACAAAAAGACAAAATAA+TGG - chr1_4:50336921-50336940 None:intergenic 20.0%
!!! TTGTCTTTTTGTGTTTATAT+TGG + chr1_4:50336926-50336945 Msa0168070:three_prime_UTR 20.0%
!! GAAAGAAAGTGTAAAGTTTA+AGG - chr1_4:50331527-50331546 None:intergenic 25.0%
! AAATTGTGAACTGAGTAAAA+GGG - chr1_4:50331554-50331573 None:intergenic 25.0%
! AAAATTGTGAACTGAGTAAA+AGG - chr1_4:50331555-50331574 None:intergenic 25.0%
! GTATGAAATTGAGTGTTTAA+GGG - chr1_4:50331592-50331611 None:intergenic 25.0%
! TGTATGAAATTGAGTGTTTA+AGG - chr1_4:50331593-50331612 None:intergenic 25.0%
!!! AATGCTTGTGATAGTTTTAT+TGG + chr1_4:50331702-50331721 Msa0168070:five_prime_UTR 25.0%
!!! TTTGTTGCTTTTTTTGTTGT+TGG + chr1_4:50331933-50331952 Msa0168070:five_prime_UTR 25.0%
!!! TTGTTGGTTTCTTTTTTTGA+GGG + chr1_4:50331949-50331968 Msa0168070:five_prime_UTR 25.0%
!! TATAATAACCCTTTATTTGG+AGG + chr1_4:50332020-50332039 Msa0168070:five_prime_UTR 25.0%
!! ATAATAACCCTTTATTTGGA+GGG + chr1_4:50332021-50332040 Msa0168070:five_prime_UTR 25.0%
!!! TGTTAAAGTTTTGGTTTTTG+TGG + chr1_4:50332044-50332063 Msa0168070:five_prime_UTR 25.0%
! ATGAAAATCAGCAAACATTA+TGG - chr1_4:50332310-50332329 None:intergenic 25.0%
! CTGATACCAACTAAAAATTT+GGG - chr1_4:50332628-50332647 None:intergenic 25.0%
! TCTGATACCAACTAAAAATT+TGG - chr1_4:50332629-50332648 None:intergenic 25.0%
! TTTAATCTTAAACTGCATCT+AGG - chr1_4:50333040-50333059 None:intergenic 25.0%
!!! AATTTCTAGTCCATCTTTTA+AGG + chr1_4:50333167-50333186 Msa0168070:CDS 25.0%
!! TAGTCAGCATACTTTATTTA+AGG - chr1_4:50333379-50333398 None:intergenic 25.0%
!! GTTTTTACACAATTCAGTTA+TGG + chr1_4:50334450-50334469 Msa0168070:CDS 25.0%
!!! GAGTAAATATTTTGATTGGA+CGG + chr1_4:50334639-50334658 Msa0168070:CDS 25.0%
! ATTATTACTATGGCAAACTT+TGG - chr1_4:50334770-50334789 None:intergenic 25.0%
! AGCCTTCTGAATTAATATTT+CGG - chr1_4:50334882-50334901 None:intergenic 25.0%
! ATATCCTCTTTAATATGAGA+TGG - chr1_4:50334919-50334938 None:intergenic 25.0%
!! ATGTAGAAGAAAAACTTTTG+GGG - chr1_4:50334987-50335006 None:intergenic 25.0%
!! CATGTAGAAGAAAAACTTTT+GGG - chr1_4:50334988-50335007 None:intergenic 25.0%
!! ACATGTAGAAGAAAAACTTT+TGG - chr1_4:50334989-50335008 None:intergenic 25.0%
! ATCTAAAAACAGCAAAAAGA+GGG + chr1_4:50335050-50335069 Msa0168070:CDS 25.0%
!!! ATTTTCTAAAACGAAGACAA+AGG + chr1_4:50335375-50335394 Msa0168070:CDS 25.0%
! TCTTCCCGTTAATAAAATAA+TGG + chr1_4:50335470-50335489 Msa0168070:intron 25.0%
!!! ATTACATACATTGATTTGAG+TGG + chr1_4:50335526-50335545 Msa0168070:intron 25.0%
! TCAGTGAAAATAGAAACAAA+CGG + chr1_4:50335850-50335869 Msa0168070:intron 25.0%
! CTCATTGTAAAATTGTTGTA+GGG - chr1_4:50335976-50335995 None:intergenic 25.0%
!! ATACTGAATGAATTTTCAGA+TGG - chr1_4:50336145-50336164 None:intergenic 25.0%
! GTAGAAAATCTTAGTAAGAA+TGG + chr1_4:50336167-50336186 Msa0168070:CDS 25.0%
!! TCTAGAAAGAGTATATGTAA+AGG - chr1_4:50336233-50336252 None:intergenic 25.0%
! AAATTGGTATCAAAATGCTA+AGG - chr1_4:50336871-50336890 None:intergenic 25.0%
!! TTTTAAACTCACTAAAGACT+TGG - chr1_4:50337031-50337050 None:intergenic 25.0%
AATTGTGAACTGAGTAAAAG+GGG - chr1_4:50331553-50331572 None:intergenic 30.0%
TTAGCTTATATCTGAAGACA+TGG - chr1_4:50331644-50331663 None:intergenic 30.0%
!!! GTTGTTGGTTTCTTTTTTTG+AGG + chr1_4:50331948-50331967 Msa0168070:five_prime_UTR 30.0%
!!! TGTTGGTTTCTTTTTTTGAG+GGG + chr1_4:50331950-50331969 Msa0168070:five_prime_UTR 30.0%
TTTAACACCCTCCAAATAAA+GGG - chr1_4:50332031-50332050 None:intergenic 30.0%
! TCTTAGTAGTTGATGCAAAT+TGG - chr1_4:50332092-50332111 None:intergenic 30.0%
!! ATTGGAAGTATGCTATCTTT+TGG + chr1_4:50332131-50332150 Msa0168070:CDS 30.0%
!!! TGCTGATTTTCATGTTATAG+AGG + chr1_4:50332317-50332336 Msa0168070:intron 30.0%
TTCATGTTATAGAGGTTTCT+TGG + chr1_4:50332325-50332344 Msa0168070:intron 30.0%
ATATTGAATTAAGAAGGGCA+TGG + chr1_4:50332398-50332417 Msa0168070:intron 30.0%
!! ATTTTGACGTCATATCTGAT+TGG - chr1_4:50332545-50332564 None:intergenic 30.0%
CGTCAAAATGAGTTTAGAAA+CGG + chr1_4:50332556-50332575 Msa0168070:intron 30.0%
GTCAAAATGAGTTTAGAAAC+GGG + chr1_4:50332557-50332576 Msa0168070:intron 30.0%
TCAAAATGAGTTTAGAAACG+GGG + chr1_4:50332558-50332577 Msa0168070:intron 30.0%
TACCAACTAAAAATTTGGGT+TGG - chr1_4:50332624-50332643 None:intergenic 30.0%
!! CTTGCATTTGTTATGTTGTT+AGG + chr1_4:50332735-50332754 Msa0168070:intron 30.0%
!! CTTAACATGTTTTATTGGTG+TGG + chr1_4:50332803-50332822 Msa0168070:intron 30.0%
CCTAACGAATATACATGATA+CGG - chr1_4:50332984-50333003 None:intergenic 30.0%
CGTATCATGTATATTCGTTA+GGG + chr1_4:50332982-50333001 Msa0168070:CDS 30.0%
GTATCATGTATATTCGTTAG+GGG + chr1_4:50332983-50333002 Msa0168070:CDS 30.0%
AGTTGCATCATTGAAGAATA+AGG - chr1_4:50333200-50333219 None:intergenic 30.0%
TCCTGTATAGTAAGATTTGA+AGG + chr1_4:50333229-50333248 Msa0168070:intron 30.0%
AACAATTGTCTGTAAATGCA+AGG - chr1_4:50333316-50333335 None:intergenic 30.0%
TTTAAGCATTAAAAGGGACA+AGG - chr1_4:50333411-50333430 None:intergenic 30.0%
ATGTATAATAAGGACTGACA+GGG - chr1_4:50333647-50333666 None:intergenic 30.0%
TATGTATAATAAGGACTGAC+AGG - chr1_4:50333648-50333667 None:intergenic 30.0%
TAGCATGTAATTATTGTGCT+CGG + chr1_4:50333889-50333908 Msa0168070:intron 30.0%
!! TGACGGATTGTATAATAGTT+TGG + chr1_4:50333942-50333961 Msa0168070:intron 30.0%
!! GTCATTTTCTGATAAACAGT+AGG - chr1_4:50334235-50334254 None:intergenic 30.0%
TCAGAAAATGACTATTGATG+TGG + chr1_4:50334243-50334262 Msa0168070:CDS 30.0%
!! TGATGGACTTGTTAAATCTT+TGG - chr1_4:50334488-50334507 None:intergenic 30.0%
AGGAAATTTCAATGTGTATG+AGG - chr1_4:50334572-50334591 None:intergenic 30.0%
TCATTATGAACAGAAACTTC+AGG - chr1_4:50334859-50334878 None:intergenic 30.0%
GACCGAAATATTAATTCAGA+AGG + chr1_4:50334877-50334896 Msa0168070:CDS 30.0%
TCAACCATCTCATATTAAAG+AGG + chr1_4:50334912-50334931 Msa0168070:CDS 30.0%
! ATCATAGTTTGAGTTTGTCA+GGG + chr1_4:50334944-50334963 Msa0168070:CDS 30.0%
! TGTAGAAGAAAAACTTTTGG+GGG - chr1_4:50334986-50335005 None:intergenic 30.0%
!!! CTCTTTTTGCTGTTTTTAGA+TGG - chr1_4:50335051-50335070 None:intergenic 30.0%
CATCTAAAAACAGCAAAAAG+AGG + chr1_4:50335049-50335068 Msa0168070:CDS 30.0%
GTTCTCTTAACTCCTTAATA+CGG - chr1_4:50335131-50335150 None:intergenic 30.0%
TATTAAGGAGTTAAGAGAAC+TGG + chr1_4:50335131-50335150 Msa0168070:CDS 30.0%
!! TGCTTGTTCAATTGCTATTT+AGG + chr1_4:50335430-50335449 Msa0168070:intron 30.0%
GTGATAACTAATGTTCATCA+AGG - chr1_4:50335612-50335631 None:intergenic 30.0%
CTTAACTGTGATAGAGAATA+TGG + chr1_4:50335707-50335726 Msa0168070:intron 30.0%
! AGTTAGGGAAAATGCATTTT+TGG + chr1_4:50335735-50335754 Msa0168070:intron 30.0%
CCTCATTGTAAAATTGTTGT+AGG - chr1_4:50335977-50335996 None:intergenic 30.0%
! CCTACAACAATTTTACAATG+AGG + chr1_4:50335974-50335993 Msa0168070:intron 30.0%
CATATGGAAAATGACATTCA+TGG + chr1_4:50336065-50336084 Msa0168070:CDS 30.0%
TCTGATTATCAACAACAACA+GGG + chr1_4:50336092-50336111 Msa0168070:CDS 30.0%
! ATTCATGATAATGAGCGTAA+GGG - chr1_4:50336279-50336298 None:intergenic 30.0%
CAACAGAAATTTACATAGAC+TGG + chr1_4:50336636-50336655 Msa0168070:CDS 30.0%
AAACATTTATCATGAATGCG+TGG - chr1_4:50336704-50336723 None:intergenic 30.0%
!! GCATTTTGATACCAATTTCA+TGG + chr1_4:50336873-50336892 Msa0168070:three_prime_UTR 30.0%
! TTTTGATACCAATTTCATGG+AGG + chr1_4:50336876-50336895 Msa0168070:three_prime_UTR 30.0%
ACTTGGTAAACACAACAATA+TGG - chr1_4:50337014-50337033 None:intergenic 30.0%
TTTCTGCTTTCTCTTGCTTT+CGG - chr1_4:50331401-50331420 None:intergenic 35.0%
! GAAAGAAAAGCTCACTGTTT+TGG - chr1_4:50331432-50331451 None:intergenic 35.0%
ATTGAAATTGCAAGCTTCCA+TGG - chr1_4:50331685-50331704 None:intergenic 35.0%
! TTGAAGAATTTGAGGTTCGA+AGG + chr1_4:50331768-50331787 Msa0168070:five_prime_UTR 35.0%
TATAGAGGAAGCTAAAGCAA+AGG + chr1_4:50331907-50331926 Msa0168070:five_prime_UTR 35.0%
ATAGAGGAAGCTAAAGCAAA+GGG + chr1_4:50331908-50331927 Msa0168070:five_prime_UTR 35.0%
!!! GTTGGTTTCTTTTTTTGAGG+GGG + chr1_4:50331951-50331970 Msa0168070:five_prime_UTR 35.0%
CTTTAACACCCTCCAAATAA+AGG - chr1_4:50332032-50332051 None:intergenic 35.0%
!!! TTTGGAGGGTGTTAAAGTTT+TGG + chr1_4:50332035-50332054 Msa0168070:five_prime_UTR 35.0%
!!! GTTTTGGTTTTTGTGGAAGA+AGG + chr1_4:50332051-50332070 Msa0168070:five_prime_UTR 35.0%
ACTACTAAGAAGCCTTTGTT+TGG + chr1_4:50332102-50332121 Msa0168070:CDS 35.0%
TCCAATCAGTATCCAAACAA+AGG - chr1_4:50332117-50332136 None:intergenic 35.0%
! TATAGAGGTTTCTTGGTGAT+TGG + chr1_4:50332332-50332351 Msa0168070:intron 35.0%
TCTACAAGCATCTTGTATGA+TGG + chr1_4:50332473-50332492 Msa0168070:intron 35.0%
!!! ACCTTACAAGTTGGTTTTGT+GGG + chr1_4:50332587-50332606 Msa0168070:intron 35.0%
AGAGCCTATTCAATATCTGT+TGG + chr1_4:50332646-50332665 Msa0168070:intron 35.0%
GAGCCTATTCAATATCTGTT+GGG + chr1_4:50332647-50332666 Msa0168070:intron 35.0%
TTATGTCAAGACTTGACATC+TGG - chr1_4:50332704-50332723 None:intergenic 35.0%
GGGAAGAATCACAATTATCA+GGG - chr1_4:50332875-50332894 None:intergenic 35.0%
TGGGAAGAATCACAATTATC+AGG - chr1_4:50332876-50332895 None:intergenic 35.0%
CCGTATCATGTATATTCGTT+AGG + chr1_4:50332981-50333000 Msa0168070:CDS 35.0%
ATGTATATTCGTTAGGGGAA+GGG + chr1_4:50332988-50333007 Msa0168070:CDS 35.0%
TACTGTAGAAACAGGACATT+AGG - chr1_4:50333086-50333105 None:intergenic 35.0%
!! AATGTCCTGTTTCTACAGTA+TGG + chr1_4:50333086-50333105 Msa0168070:intron 35.0%
TCAATGATGCAACTTGCATT+TGG + chr1_4:50333206-50333225 Msa0168070:intron 35.0%
GCCTTCAAATCTTACTATAC+AGG - chr1_4:50333233-50333252 None:intergenic 35.0%
! AAGATTTGAAGGCGTGTAAT+TGG + chr1_4:50333240-50333259 Msa0168070:intron 35.0%
TCCTAATTTCGGTAATTGCT+TGG + chr1_4:50333592-50333611 Msa0168070:intron 35.0%
ACCAAGCAATTACCGAAATT+AGG - chr1_4:50333596-50333615 None:intergenic 35.0%
TAATTTCGGTAATTGCTTGG+TGG + chr1_4:50333595-50333614 Msa0168070:intron 35.0%
TCTATTCGTGATCACACATT+AGG + chr1_4:50334097-50334116 Msa0168070:CDS 35.0%
TAACACACAGAAAACCATGA+CGG + chr1_4:50334153-50334172 Msa0168070:CDS 35.0%
CAGAGAATACGAAACAAGTA+GGG + chr1_4:50334341-50334360 Msa0168070:CDS 35.0%
GGATGAAACCTTCAAATGAA+AGG + chr1_4:50334362-50334381 Msa0168070:CDS 35.0%
TCACACATCCTTTCATTTGA+AGG - chr1_4:50334373-50334392 None:intergenic 35.0%
TCAAATGAAAGGATGTGTGA+AGG + chr1_4:50334373-50334392 Msa0168070:CDS 35.0%
CAAATGAAAGGATGTGTGAA+GGG + chr1_4:50334374-50334393 Msa0168070:CDS 35.0%
ATGTGTGAAGGGAACAATAA+TGG + chr1_4:50334385-50334404 Msa0168070:CDS 35.0%
! AACGATGAGACATTTTTGTC+TGG - chr1_4:50334433-50334452 None:intergenic 35.0%
! TCAGCTTCTACATTTTCTGA+TGG - chr1_4:50334505-50334524 None:intergenic 35.0%
GGTATCCTTGTAAAAAGACT+CGG - chr1_4:50334551-50334570 None:intergenic 35.0%
TACACATTGAAATTTCCTGC+TGG + chr1_4:50334574-50334593 Msa0168070:CDS 35.0%
! TATGAGTTACATGAAGCACT+TGG + chr1_4:50334598-50334617 Msa0168070:CDS 35.0%
! TTACTCTCTTTGAGAAAACC+TGG - chr1_4:50334625-50334644 None:intergenic 35.0%
!!! TATTTTGATTGGACGGTACA+AGG + chr1_4:50334646-50334665 Msa0168070:CDS 35.0%
GACGAGATTCAAAAGTCAAT+TGG - chr1_4:50334720-50334739 None:intergenic 35.0%
!! ATTGACTTTTGAATCTCGTC+CGG + chr1_4:50334720-50334739 Msa0168070:CDS 35.0%
! ATCATTTTCTACATCAGTGC+AGG + chr1_4:50334810-50334829 Msa0168070:CDS 35.0%
CTGACAAACTCAAACTATGA+TGG - chr1_4:50334945-50334964 None:intergenic 35.0%
! CATCATAGTTTGAGTTTGTC+AGG + chr1_4:50334943-50334962 Msa0168070:CDS 35.0%
TTAACTCCTTAATACGGTCT+TGG - chr1_4:50335125-50335144 None:intergenic 35.0%
! TTTTCTAATCCTGTCTCAGT+AGG + chr1_4:50335192-50335211 Msa0168070:intron 35.0%
!!! AGGCTTTGGTTTTTTGATAG+CGG + chr1_4:50335212-50335231 Msa0168070:intron 35.0%
ACTTGTAGTTCCAATTCTTG+TGG + chr1_4:50335238-50335257 Msa0168070:intron 35.0%
AGACAAAGGTAACGTCTTAT+TGG + chr1_4:50335389-50335408 Msa0168070:intron 35.0%
!! ACATTGATTTGAGTGGAATC+AGG + chr1_4:50335533-50335552 Msa0168070:intron 35.0%
! TTTGAGATTTGTGAATAGCC+AGG + chr1_4:50335584-50335603 Msa0168070:intron 35.0%
TTAGTTATCACTGAAGCCAA+TGG + chr1_4:50335621-50335640 Msa0168070:intron 35.0%
AGAGAATATGGAAGCTAGTT+AGG + chr1_4:50335719-50335738 Msa0168070:intron 35.0%
GAGAATATGGAAGCTAGTTA+GGG + chr1_4:50335720-50335739 Msa0168070:intron 35.0%
!! CTGTTGTTGTTGATAATCAG+AGG - chr1_4:50336093-50336112 None:intergenic 35.0%
CTCTGATTATCAACAACAAC+AGG + chr1_4:50336091-50336110 Msa0168070:CDS 35.0%
! GATTCATGATAATGAGCGTA+AGG - chr1_4:50336280-50336299 None:intergenic 35.0%
GACTGCAATAATTGAACAAG+CGG - chr1_4:50336673-50336692 None:intergenic 35.0%
ACTTAAAGCCTCCATGAAAT+TGG - chr1_4:50336887-50336906 None:intergenic 35.0%
GGTAAACACAACAATATGGT+TGG - chr1_4:50337010-50337029 None:intergenic 35.0%
! AGAATTTGAGGTTCGAAGGT+TGG + chr1_4:50331772-50331791 Msa0168070:five_prime_UTR 40.0%
! GAATTTGAGGTTCGAAGGTT+GGG + chr1_4:50331773-50331792 Msa0168070:five_prime_UTR 40.0%
! GGATAGGTTGTTATTGGCAA+CGG + chr1_4:50331825-50331844 Msa0168070:five_prime_UTR 40.0%
TGGAAGAAGGTGAAGAAGAT+GGG + chr1_4:50332064-50332083 Msa0168070:exon 40.0%
! GCCTTTGTTTGGATACTGAT+TGG + chr1_4:50332113-50332132 Msa0168070:CDS 40.0%
CAACGTTGTGCTAGAATGTA+TGG + chr1_4:50332160-50332179 Msa0168070:intron 40.0%
!!! CACCTTACAAGTTGGTTTTG+TGG + chr1_4:50332586-50332605 Msa0168070:intron 40.0%
!!! CCTTACAAGTTGGTTTTGTG+GGG + chr1_4:50332588-50332607 Msa0168070:intron 40.0%
!!! GGCCAACCCAAATTTTTAGT+TGG + chr1_4:50332619-50332638 Msa0168070:intron 40.0%
TGGCCCAACAGATATTGAAT+AGG - chr1_4:50332653-50332672 None:intergenic 40.0%
!! GTTCTGAGAGCACATACTTT+GGG - chr1_4:50332895-50332914 None:intergenic 40.0%
!! TGTTCTGAGAGCACATACTT+TGG - chr1_4:50332896-50332915 None:intergenic 40.0%
! GATTTTTCACATGACCCTCT+AGG + chr1_4:50332939-50332958 Msa0168070:CDS 40.0%
TCGCAACAGATAATCCTAGA+GGG - chr1_4:50332956-50332975 None:intergenic 40.0%
TTCGCAACAGATAATCCTAG+AGG - chr1_4:50332957-50332976 None:intergenic 40.0%
CATGTATATTCGTTAGGGGA+AGG + chr1_4:50332987-50333006 Msa0168070:CDS 40.0%
!! TCCTGTTTCTACAGTATGGT+TGG + chr1_4:50333090-50333109 Msa0168070:intron 40.0%
TCCAACCATACTGTAGAAAC+AGG - chr1_4:50333094-50333113 None:intergenic 40.0%
TTTCTACAGTATGGTTGGAC+AGG + chr1_4:50333095-50333114 Msa0168070:intron 40.0%
CTGTTACTGGAAAACATCAG+TGG + chr1_4:50333121-50333140 Msa0168070:CDS 40.0%
!!! CTAGTCCATCTTTTAAGGTG+AGG + chr1_4:50333172-50333191 Msa0168070:intron 40.0%
AGGATCCTCACCTTAAAAGA+TGG - chr1_4:50333180-50333199 None:intergenic 40.0%
TGTGAATGTTGTTGCCAATG+CGG + chr1_4:50333443-50333462 Msa0168070:intron 40.0%
! GATTCTCTTTTGAACCGCAT+TGG - chr1_4:50333460-50333479 None:intergenic 40.0%
! ATGTAAGGCTTGGTAAGTCA+GGG - chr1_4:50333848-50333867 None:intergenic 40.0%
CATTTGCCTGTCAACATGTA+AGG - chr1_4:50333863-50333882 None:intergenic 40.0%
GCATTCACAGATGACAGAAA+AGG - chr1_4:50334027-50334046 None:intergenic 40.0%
TTTCTGTCATCTGTGAATGC+AGG + chr1_4:50334027-50334046 Msa0168070:intron 40.0%
! TTCACGCTTTGGATTTGACT+AGG - chr1_4:50334130-50334149 None:intergenic 40.0%
GTGTGTTATGTTTCACGCTT+TGG - chr1_4:50334141-50334160 None:intergenic 40.0%
AACACACAGAAAACCATGAC+GGG + chr1_4:50334154-50334173 Msa0168070:CDS 40.0%
! AATAGCTTTTCCCAGGACAT+TGG - chr1_4:50334207-50334226 None:intergenic 40.0%
CTTGAAATTGACAGCGATCA+AGG + chr1_4:50334280-50334299 Msa0168070:CDS 40.0%
! TGACATCGATTGAAGCAAGA+TGG - chr1_4:50334308-50334327 None:intergenic 40.0%
GCAGAGAATACGAAACAAGT+AGG + chr1_4:50334340-50334359 Msa0168070:CDS 40.0%
! TCAGACCGAGTCTTTTTACA+AGG + chr1_4:50334543-50334562 Msa0168070:CDS 40.0%
TCATGTAACTCATAACCAGC+AGG - chr1_4:50334592-50334611 None:intergenic 40.0%
ACTGCTTCCAAAAGATGTTC+CGG - chr1_4:50334742-50334761 None:intergenic 40.0%
AAAACAGCAAAAAGAGGGCT+AGG + chr1_4:50335055-50335074 Msa0168070:CDS 40.0%
ACTGATCCAAGACCGTATTA+AGG + chr1_4:50335116-50335135 Msa0168070:CDS 40.0%
! TTAAGAGAACTGGTGCCAAA+CGG + chr1_4:50335141-50335160 Msa0168070:CDS 40.0%
AAACCTTCAGCCACAAGAAT+TGG - chr1_4:50335251-50335270 None:intergenic 40.0%
!! GTGCAGTATTGATTCACTGT+TGG + chr1_4:50335288-50335307 Msa0168070:intron 40.0%
!! ACGTCTTATTGGCTTTGTGA+TGG + chr1_4:50335400-50335419 Msa0168070:intron 40.0%
CTAATGTTCATCAAGGAACC+TGG - chr1_4:50335605-50335624 None:intergenic 40.0%
AATGAAATTCCAGCTACCCT+GGG - chr1_4:50335672-50335691 None:intergenic 40.0%
AAATGAAATTCCAGCTACCC+TGG - chr1_4:50335673-50335692 None:intergenic 40.0%
AGGGTAGCTGGAATTTCATT+TGG + chr1_4:50335672-50335691 Msa0168070:intron 40.0%
AACAACAACAGGGTTCAAGT+TGG + chr1_4:50336102-50336121 Msa0168070:CDS 40.0%
! ACAACAACAGGGTTCAAGTT+GGG + chr1_4:50336103-50336122 Msa0168070:CDS 40.0%
! TTGGGACTGACGATTTTGAA+CGG + chr1_4:50336363-50336382 Msa0168070:CDS 40.0%
! GAAGACATGCATGTGTTTTG+TGG + chr1_4:50336407-50336426 Msa0168070:CDS 40.0%
! ATGCATGTGTTTTGTGGTTG+AGG + chr1_4:50336413-50336432 Msa0168070:CDS 40.0%
! ATGTGTTTTGTGGTTGAGGT+AGG + chr1_4:50336417-50336436 Msa0168070:intron 40.0%
ATCGATGAATTGTCTGTCAC+AGG + chr1_4:50336606-50336625 Msa0168070:intron 40.0%
TCGATGAATTGTCTGTCACA+GGG + chr1_4:50336607-50336626 Msa0168070:intron 40.0%
TACATAGACTGGACATCTTG+TGG + chr1_4:50336647-50336666 Msa0168070:CDS 40.0%
! TTGGGAGAAGGAAACTTGTT+GGG + chr1_4:50336832-50336851 Msa0168070:three_prime_UTR 40.0%
! AAGTGAGTGAGAGGTGTGAT+GGG + chr1_4:50331799-50331818 Msa0168070:five_prime_UTR 45.0%
GGGTAGGGATAGGTTGTTAT+TGG + chr1_4:50331819-50331838 Msa0168070:five_prime_UTR 45.0%
! AGGTTGTTATTGGCAACGGT+CGG + chr1_4:50331829-50331848 Msa0168070:five_prime_UTR 45.0%
!!! GGTTTCTTTTTTTGAGGGGG+TGG + chr1_4:50331954-50331973 Msa0168070:five_prime_UTR 45.0%
!!! TTCTTTTTTTGAGGGGGTGG+TGG + chr1_4:50331957-50331976 Msa0168070:five_prime_UTR 45.0%
GTGGAAGAAGGTGAAGAAGA+TGG + chr1_4:50332063-50332082 Msa0168070:exon 45.0%
CCCCACAAAACCAACTTGTA+AGG - chr1_4:50332591-50332610 None:intergenic 45.0%
!!! TGGTTTTGTGGGGTTGAGTT+AGG + chr1_4:50332598-50332617 Msa0168070:intron 45.0%
GTCAAGACTTGACATCTGGA+GGG - chr1_4:50332700-50332719 None:intergenic 45.0%
TGTCAAGACTTGACATCTGG+AGG - chr1_4:50332701-50332720 None:intergenic 45.0%
TTGCTTGCAGGATCTTGACA+TGG + chr1_4:50332829-50332848 Msa0168070:intron 45.0%
TGCTTGCAGGATCTTGACAT+GGG + chr1_4:50332830-50332849 Msa0168070:intron 45.0%
TATGTGCTCTCAGAACACCT+TGG + chr1_4:50332899-50332918 Msa0168070:CDS 45.0%
ACCTTGGAGCAGATCTATGT+TGG + chr1_4:50332915-50332934 Msa0168070:CDS 45.0%
TCCAACATAGATCTGCTCCA+AGG - chr1_4:50332919-50332938 None:intergenic 45.0%
! CCAAGTTGAACAACTCCAAG+TGG - chr1_4:50333354-50333373 None:intergenic 45.0%
CCACTTGGAGTTGTTCAACT+TGG + chr1_4:50333351-50333370 Msa0168070:CDS 45.0%
!! CTTGGTGGTGATTGAAGCAT+TGG + chr1_4:50333610-50333629 Msa0168070:intron 45.0%
! CATGTAAGGCTTGGTAAGTC+AGG - chr1_4:50333849-50333868 None:intergenic 45.0%
ACCAAGCCTTACATGTTGAC+AGG + chr1_4:50333854-50333873 Msa0168070:intron 45.0%
TGTCATCTGTGAATGCAGGT+TGG + chr1_4:50334031-50334050 Msa0168070:intron 45.0%
!! AATGCAGGTTGGTGAAGACA+TGG + chr1_4:50334042-50334061 Msa0168070:intron 45.0%
!! ATGCAGGTTGGTGAAGACAT+GGG + chr1_4:50334043-50334062 Msa0168070:intron 45.0%
! CGCTTTGGATTTGACTAGGA+AGG - chr1_4:50334126-50334145 None:intergenic 45.0%
ATCAAGTGTTTCACCCGTCA+TGG - chr1_4:50334170-50334189 None:intergenic 45.0%
GACGGGTGAAACACTTGATA+TGG + chr1_4:50334171-50334190 Msa0168070:CDS 45.0%
! CTTTTCCCAGGACATTGGAA+GGG - chr1_4:50334202-50334221 None:intergenic 45.0%
! GGAGATGAATAGCTTTTCCC+AGG - chr1_4:50334214-50334233 None:intergenic 45.0%
TATTGATGTGGCCAAACACG+AGG + chr1_4:50334255-50334274 Msa0168070:CDS 45.0%
ATTGATGTGGCCAAACACGA+GGG + chr1_4:50334256-50334275 Msa0168070:CDS 45.0%
AATTTCAAGCCCCTCGTGTT+TGG - chr1_4:50334269-50334288 None:intergenic 45.0%
! TTACATGAAGCACTTGGACC+AGG + chr1_4:50334604-50334623 Msa0168070:CDS 45.0%
! ATCTCGTCCGGAACATCTTT+TGG + chr1_4:50334732-50334751 Msa0168070:CDS 45.0%
!! GGAACATCTTTTGGAAGCAG+TGG + chr1_4:50334741-50334760 Msa0168070:CDS 45.0%
TACATCAGTGCAGGACACAA+TGG + chr1_4:50334819-50334838 Msa0168070:CDS 45.0%
TTGAGTTTGTCAGGGATCTG+CGG + chr1_4:50334952-50334971 Msa0168070:CDS 45.0%
AACTGGTTACTACACGAGCT+AGG - chr1_4:50335012-50335031 None:intergenic 45.0%
CGTGTAGTAACCAGTTTGAG+AGG + chr1_4:50335016-50335035 Msa0168070:CDS 45.0%
GTTCAGAAGACCTCTCAAAC+TGG - chr1_4:50335029-50335048 None:intergenic 45.0%
AAAGTTGTAGGCCTAGACCA+AGG + chr1_4:50335085-50335104 Msa0168070:CDS 45.0%
AAGTTGTAGGCCTAGACCAA+GGG + chr1_4:50335086-50335105 Msa0168070:CDS 45.0%
CAAGATACCTTTGCTCCGTT+TGG - chr1_4:50335159-50335178 None:intergenic 45.0%
AATCCTGTCTCAGTAGGCTT+TGG + chr1_4:50335198-50335217 Msa0168070:intron 45.0%
AAACCAAAGCCTACTGAGAC+AGG - chr1_4:50335204-50335223 None:intergenic 45.0%
GTTCCAATTCTTGTGGCTGA+AGG + chr1_4:50335245-50335264 Msa0168070:intron 45.0%
CAGCATGCTTAGTAACGCTT+TGG - chr1_4:50335342-50335361 None:intergenic 45.0%
! GAGTGGAATCAGGCTTTGAT+CGG + chr1_4:50335543-50335562 Msa0168070:intron 45.0%
! CATAGGTGTGAGGTATCCAT+TGG - chr1_4:50335640-50335659 None:intergenic 45.0%
GTTACAATGGCATAGGTGTG+AGG - chr1_4:50335650-50335669 None:intergenic 45.0%
ACCTATGCCATTGTAACCCA+GGG + chr1_4:50335653-50335672 Msa0168070:intron 45.0%
AACTGCGCAGTTGCATCATA+TGG + chr1_4:50336049-50336068 Msa0168070:intron 45.0%
TTCTTTGCTTGGGGAAAGCA+GGG - chr1_4:50336809-50336828 None:intergenic 45.0%
TTCCCCAAGCAAAGAAGTCT+TGG + chr1_4:50336813-50336832 Msa0168070:three_prime_UTR 45.0%
TCCCCAAGCAAAGAAGTCTT+GGG + chr1_4:50336814-50336833 Msa0168070:three_prime_UTR 45.0%
TCCCAAGACTTCTTTGCTTG+GGG - chr1_4:50336818-50336837 None:intergenic 45.0%
CTCCCAAGACTTCTTTGCTT+GGG - chr1_4:50336819-50336838 None:intergenic 45.0%
TCTCCCAAGACTTCTTTGCT+TGG - chr1_4:50336820-50336839 None:intergenic 45.0%
AGCAAAGAAGTCTTGGGAGA+AGG + chr1_4:50336820-50336839 Msa0168070:three_prime_UTR 45.0%
CTTGGGAGAAGGAAACTTGT+TGG + chr1_4:50336831-50336850 Msa0168070:three_prime_UTR 45.0%
! TTTGAGGTTCGAAGGTTGGG+AGG + chr1_4:50331776-50331795 Msa0168070:five_prime_UTR 50.0%
! GAAGTGAGTGAGAGGTGTGA+TGG + chr1_4:50331798-50331817 Msa0168070:five_prime_UTR 50.0%
!! AGTGAGAGGTGTGATGGGTA+GGG + chr1_4:50331804-50331823 Msa0168070:five_prime_UTR 50.0%
!! AACCCTGCTCGCCGTTTTAA+TGG - chr1_4:50331859-50331878 None:intergenic 50.0%
AGGAGGAAACAAGCTGGAAG+AGG + chr1_4:50331880-50331899 Msa0168070:five_prime_UTR 50.0%
GGAGGAAACAAGCTGGAAGA+GGG + chr1_4:50331881-50331900 Msa0168070:five_prime_UTR 50.0%
! GCTGGAAGAGGGTCTTATAG+AGG + chr1_4:50331892-50331911 Msa0168070:five_prime_UTR 50.0%
!!! TTTTTTTGAGGGGGTGGTGG+TGG + chr1_4:50331960-50331979 Msa0168070:five_prime_UTR 50.0%
!!! TTTTTTGAGGGGGTGGTGGT+GGG + chr1_4:50331961-50331980 Msa0168070:five_prime_UTR 50.0%
AGACTAGGGACTAGGGACTA+GGG + chr1_4:50331988-50332007 Msa0168070:five_prime_UTR 50.0%
GGGTGTCTCACCTTACAAGT+TGG + chr1_4:50332578-50332597 Msa0168070:intron 50.0%
CACCTGCTATCAGATCACCT+GGG + chr1_4:50332671-50332690 Msa0168070:intron 50.0%
TTGGTGTGGCAATTGCTTGC+AGG + chr1_4:50332817-50332836 Msa0168070:intron 50.0%
TTGCAGGATCTTGACATGGG+AGG + chr1_4:50332833-50332852 Msa0168070:intron 50.0%
GTTGGACAGGTAGCTGTTAC+TGG + chr1_4:50333108-50333127 Msa0168070:CDS 50.0%
GTCGTAGCAGTACTACCACT+TGG + chr1_4:50333336-50333355 Msa0168070:CDS 50.0%
GCCTGTCAACATGTAAGGCT+TGG - chr1_4:50333858-50333877 None:intergenic 50.0%
!! TGCAGGTTGGTGAAGACATG+GGG + chr1_4:50334044-50334063 Msa0168070:intron 50.0%
TAACGCCCTTCCAATGTCCT+GGG + chr1_4:50334194-50334213 Msa0168070:CDS 50.0%
! GCTTTTCCCAGGACATTGGA+AGG - chr1_4:50334203-50334222 None:intergenic 50.0%
TTGATGTGGCCAAACACGAG+GGG + chr1_4:50334257-50334276 Msa0168070:CDS 50.0%
CTAGGCCAGGTGAAAGTTGT+AGG + chr1_4:50335073-50335092 Msa0168070:CDS 50.0%
CTAGGCCTACAACTTTCACC+TGG - chr1_4:50335081-50335100 None:intergenic 50.0%
AGTTGTCTGTCCCTTGGTCT+AGG - chr1_4:50335099-50335118 None:intergenic 50.0%
TGGATCAGTTGTCTGTCCCT+TGG - chr1_4:50335105-50335124 None:intergenic 50.0%
CACCTATGCCATTGTAACCC+AGG + chr1_4:50335652-50335671 Msa0168070:intron 50.0%
ACCCTGGGTTACAATGGCAT+AGG - chr1_4:50335657-50335676 None:intergenic 50.0%
TGATGCAACTGCGCAGTTGT+AGG - chr1_4:50336047-50336066 None:intergenic 50.0%
!! ACAGGGTTCAAGTTGGGCAA+TGG + chr1_4:50336109-50336128 Msa0168070:CDS 50.0%
!! TCAAGTTGGGCAATGGAGGT+AGG + chr1_4:50336116-50336135 Msa0168070:CDS 50.0%
! GAATGGGCAGATGCTTGTTG+AGG + chr1_4:50336184-50336203 Msa0168070:CDS 50.0%
CATGCTACAGATGCTCTGTG+AGG + chr1_4:50336299-50336318 Msa0168070:intron 50.0%
CGTCAGTCCCAAGCTTCTTA+CGG - chr1_4:50336355-50336374 None:intergenic 50.0%
TCATGAATGCGTGGTGCTCT+TGG - chr1_4:50336695-50336714 None:intergenic 50.0%
CTTCTTTGCTTGGGGAAAGC+AGG - chr1_4:50336810-50336829 None:intergenic 50.0%
!! GGAGAAGGAAACTTGTTGGG+AGG + chr1_4:50336835-50336854 Msa0168070:three_prime_UTR 50.0%
GTTGGGAGGAAGTGAGTGAG+AGG + chr1_4:50331790-50331809 Msa0168070:five_prime_UTR 55.0%
!! GAGTGAGAGGTGTGATGGGT+AGG + chr1_4:50331803-50331822 Msa0168070:five_prime_UTR 55.0%
!! GAGGTGTGATGGGTAGGGAT+AGG + chr1_4:50331809-50331828 Msa0168070:five_prime_UTR 55.0%
CGGTCGGACCGCCATTAAAA+CGG + chr1_4:50331845-50331864 Msa0168070:five_prime_UTR 55.0%
!! CCTGCTCGCCGTTTTAATGG+CGG - chr1_4:50331856-50331875 None:intergenic 55.0%
CGCCATTAAAACGGCGAGCA+GGG + chr1_4:50331854-50331873 Msa0168070:five_prime_UTR 55.0%
TAAAACGGCGAGCAGGGTTG+AGG + chr1_4:50331860-50331879 Msa0168070:five_prime_UTR 55.0%
GGGTTGAGGAGGAAACAAGC+TGG + chr1_4:50331874-50331893 Msa0168070:five_prime_UTR 55.0%
!! TGGTGGTGGGAGAGAGACTA+GGG + chr1_4:50331974-50331993 Msa0168070:five_prime_UTR 55.0%
TGGGAGAGAGACTAGGGACT+AGG + chr1_4:50331980-50331999 Msa0168070:five_prime_UTR 55.0%
GGGAGAGAGACTAGGGACTA+GGG + chr1_4:50331981-50332000 Msa0168070:five_prime_UTR 55.0%
GAGACTAGGGACTAGGGACT+AGG + chr1_4:50331987-50332006 Msa0168070:five_prime_UTR 55.0%
CCAGGTGATCTGATAGCAGG+TGG - chr1_4:50332673-50332692 None:intergenic 55.0%
CCACCTGCTATCAGATCACC+TGG + chr1_4:50332670-50332689 Msa0168070:intron 55.0%
GACCCAGGTGATCTGATAGC+AGG - chr1_4:50332676-50332695 None:intergenic 55.0%
GTAACGCCCTTCCAATGTCC+TGG + chr1_4:50334193-50334212 Msa0168070:CDS 55.0%
GTGCAGGACACAATGGTCTC+TGG + chr1_4:50334826-50334845 Msa0168070:CDS 55.0%
AGCAAAAAGAGGGCTAGGCC+AGG + chr1_4:50335060-50335079 Msa0168070:CDS 55.0%
! ACTGGTGCCAAACGGAGCAA+AGG + chr1_4:50335149-50335168 Msa0168070:CDS 55.0%
CCAGCTACCCTGGGTTACAA+TGG - chr1_4:50335663-50335682 None:intergenic 55.0%
CCATTGTAACCCAGGGTAGC+TGG + chr1_4:50335660-50335679 Msa0168070:intron 55.0%
!! GGGTTCAAGTTGGGCAATGG+AGG + chr1_4:50336112-50336131 Msa0168070:CDS 55.0%
AGTTGGGCAATGGAGGTAGG+AGG + chr1_4:50336119-50336138 Msa0168070:CDS 55.0%
AACGGTGCAAGTGAAGCTCG+TGG + chr1_4:50336381-50336400 Msa0168070:CDS 55.0%
TTGGGGAAAGCAGGGAGGAA+GGG - chr1_4:50336801-50336820 None:intergenic 55.0%
TTTGCTTGGGGAAAGCAGGG+AGG - chr1_4:50336806-50336825 None:intergenic 55.0%
CCGCCATTAAAACGGCGAGC+AGG + chr1_4:50331853-50331872 Msa0168070:five_prime_UTR 60.0%
!! GTGGTGGTGGGAGAGAGACT+AGG + chr1_4:50331973-50331992 Msa0168070:five_prime_UTR 60.0%
TGACATCTGGAGGGTGACCC+AGG - chr1_4:50332691-50332710 None:intergenic 60.0%
CTTGGGGAAAGCAGGGAGGA+AGG - chr1_4:50336802-50336821 None:intergenic 60.0%
AACGGCGAGCAGGGTTGAGG+AGG + chr1_4:50331863-50331882 Msa0168070:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50331350 50337122 50331350 ID=Msa0168070;Name=Msa0168070
chr1_4 mRNA 50331350 50337122 50331350 ID=Msa0168070-mRNA-1;Parent=Msa0168070;Name=Msa0168070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=732|1|1|1|0.87|0.88|9|408|666
chr1_4 exon 50331350 50332176 50331350 ID=Msa0168070-mRNA-1:exon:14828;Parent=Msa0168070-mRNA-1
chr1_4 exon 50332839 50333009 50332839 ID=Msa0168070-mRNA-1:exon:14829;Parent=Msa0168070-mRNA-1
chr1_4 exon 50333104 50333188 50333104 ID=Msa0168070-mRNA-1:exon:14830;Parent=Msa0168070-mRNA-1
chr1_4 exon 50333327 50333386 50333327 ID=Msa0168070-mRNA-1:exon:14831;Parent=Msa0168070-mRNA-1
chr1_4 exon 50334049 50335170 50334049 ID=Msa0168070-mRNA-1:exon:14832;Parent=Msa0168070-mRNA-1
chr1_4 exon 50335289 50335396 50335289 ID=Msa0168070-mRNA-1:exon:14833;Parent=Msa0168070-mRNA-1
chr1_4 exon 50336059 50336205 50336059 ID=Msa0168070-mRNA-1:exon:14834;Parent=Msa0168070-mRNA-1
chr1_4 exon 50336309 50336434 50336309 ID=Msa0168070-mRNA-1:exon:14835;Parent=Msa0168070-mRNA-1
chr1_4 exon 50336628 50337122 50336628 ID=Msa0168070-mRNA-1:exon:14836;Parent=Msa0168070-mRNA-1
chr1_4 five_prime_UTR 50331350 50332081 50331350 ID=Msa0168070-mRNA-1:five_prime_utr;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50332082 50332176 50332082 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50332839 50333009 50332839 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50333104 50333188 50333104 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50333327 50333386 50333327 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50334049 50335170 50334049 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50335289 50335396 50335289 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50336059 50336205 50336059 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50336309 50336434 50336309 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 CDS 50336628 50336714 50336628 ID=Msa0168070-mRNA-1:cds;Parent=Msa0168070-mRNA-1
chr1_4 three_prime_UTR 50336715 50337122 50336715 ID=Msa0168070-mRNA-1:three_prime_utr;Parent=Msa0168070-mRNA-1
Gene Sequence

>Msa0168070

ATGGGTACCAATTTGCATCAACTACTAAGAAGCCTTTGTTTGGATACTGATTGGAAGTATGCTATCTTTTGGAAGCTACAACGTTGTGCTAGAATGATCTTGACATGGGAGGATGCTTACTATGACAACCCTGATAATTGTGATTCTTCCCAAAGTATGTGCTCTCAGAACACCTTGGAGCAGATCTATGTTGGAGATTTTTCACATGACCCTCTAGGATTATCTGTTGCGAAGATGCCGTATCATGTATATTCGTTAGGGGAAGGTATGGTTGGACAGGTAGCTGTTACTGGAAAACATCAGTGGATCTGTGCAGATAATCAAGTTACAATTTCTAGTCCATCTTTTAAGACAATTGTTGTCGTAGCAGTACTACCACTTGGAGTTGTTCAACTTGGCTCCTTAAATAAAGTTGGTGAAGACATGGGGTTTGTAACTCACATAAGAAGTCTCTTTTTGTCTATTCGTGATCACACATTAGGTTGCCTTCCTAGTCAAATCCAAAGCGTGAAACATAACACACAGAAAACCATGACGGGTGAAACACTTGATATGGTAACGCCCTTCCAATGTCCTGGGAAAAGCTATTCATCTCCTACTGTTTATCAGAAAATGACTATTGATGTGGCCAAACACGAGGGGCTTGAAATTGACAGCGATCAAGGTTCCATCTTGCTTCAATCGATGTCAAATATGATGACTGCAGAGAATACGAAACAAGTAGGGATGAAACCTTCAAATGAAAGGATGTGTGAAGGGAACAATAATGGCTGCAAAGATACTAGTTTGAAACCAGACAAAAATGTCTCATCGTTTTTACACAATTCAGTTATGGATTATAATAGTACCAAAGATTTAACAAGTCCATCAGAAAATGTAGAAGCTGATACTGAGATGTCAAAGTTTCAGACCGAGTCTTTTTACAAGGATACCTCATACACATTGAAATTTCCTGCTGGTTATGAGTTACATGAAGCACTTGGACCAGGTTTTCTCAAAGAGAGTAAATATTTTGATTGGACGGTACAAGGAAATCAAGATAGTAAAGCTTCTGAGATGTCAGATGAGATTAGCTGCAGCCAATTGACTTTTGAATCTCGTCCGGAACATCTTTTGGAAGCAGTGGTGACCAAAGTTTGCCATAGTAATAATGATATTGTAGATAATGAGGTATCATTTTCTACATCAGTGCAGGACACAATGGTCTCTGGAAGAAAACCTGAAGTTTCTGTTCATAATGACCGAAATATTAATTCAGAAGGCTATTCAATTGATCAACCATCTCATATTAAAGAGGATATGCACCATCATAGTTTGAGTTTGTCAGGGATCTGCGGTGTGATATCCCCCAAAAGTTTTTCTTCTACATGTCCTAGCTCGTGTAGTAACCAGTTTGAGAGGTCTTCTGAACCATCTAAAAACAGCAAAAAGAGGGCTAGGCCAGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTGATCCAAGACCGTATTAAGGAGTTAAGAGAACTGGTGCCAAACGGAGCAAAGTGCAGTATTGATTCACTGTTGGAGTGCACAATAAAGCACATGCTCTTTCTCCAAAGCGTTACTAAGCATGCTGACAAGATAAATAAATTTTCTAAAACGAAGACAAAGTTGCATCATATGGAAAATGACATTCATGGATCCTCTGATTATCAACAACAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAAATTCATTCAGTATTAGTAGAAAATCTTAGTAAGAATGGGCAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCGTAAGAAGCTTGGGACTGACGATTTTGAACGGTGCAAGTGAAGCTCGTGGTGAGAAGACATGCATGTGTTTTGTGGTTGAGGGCCAAAACAACAGAAATTTACATAGACTGGACATCTTGTGGCCGCTTGTTCAATTATTGCAGTCCAAGAGCACCACGCATTCATGA
Protein sequence

>Msa0168070

MGTNLHQLLRSLCLDTDWKYAIFWKLQRCARMILTWEDAYYDNPDNCDSSQSMCSQNTLEQIYVGDFSHDPLGLSVAKMPYHVYSLGEGMVGQVAVTGKHQWICADNQVTISSPSFKTIVVVAVLPLGVVQLGSLNKVGEDMGFVTHIRSLFLSIRDHTLGCLPSQIQSVKHNTQKTMTGETLDMVTPFQCPGKSYSSPTVYQKMTIDVAKHEGLEIDSDQGSILLQSMSNMMTAENTKQVGMKPSNERMCEGNNNGCKDTSLKPDKNVSSFLHNSVMDYNSTKDLTSPSENVEADTEMSKFQTESFYKDTSYTLKFPAGYELHEALGPGFLKESKYFDWTVQGNQDSKASEMSDEISCSQLTFESRPEHLLEAVVTKVCHSNNDIVDNEVSFSTSVQDTMVSGRKPEVSVHNDRNINSEGYSIDQPSHIKEDMHHHSLSLSGICGVISPKSFSSTCPSSCSNQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSVTKHADKINKFSKTKTKLHHMENDIHGSSDYQQQQGSSWAMEVGGHLKIHSVLVENLSKNGQMLVEMLCEECSHFLEIAEAVRSLGLTILNGASEARGEKTCMCFVVEGQNNRNLHRLDILWPLVQLLQSKSTTHS*