AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123340 MtrunA17_Chr1g0184231 94.294 666 38 0 1 666 1 666 0.0 1307
Msa0123340 MtrunA17_Chr7g0261061 57.389 697 231 8 1 665 1 663 0.0 704
Msa0123340 MtrunA17_Chr7g0239641 28.731 717 390 27 2 650 3 666 8.67e-66 229
Msa0123340 MtrunA17_Chr4g0025571 54.124 194 83 3 466 659 707 894 1.98e-55 203
Msa0123340 MtrunA17_Chr4g0025571 30.986 213 116 7 1 186 1 209 3.53e-20 95.5
Msa0123340 MtrunA17_Chr2g0322001 52.062 194 87 3 466 659 668 855 7.25e-54 198
Msa0123340 MtrunA17_Chr2g0322001 30.047 213 113 7 1 184 1 206 4.17e-20 95.5
Msa0123340 MtrunA17_Chr1g0188861 44.086 186 97 3 482 664 573 754 2.16e-42 164
Msa0123340 MtrunA17_Chr1g0188861 32.515 163 75 4 1 155 5 140 6.99e-15 78.6
Msa0123340 MtrunA17_Chr2g0317011 27.419 186 84 7 5 155 20 189 3.95e-13 72.0
Msa0123340 MtrunA17_Chr5g0413871 30.049 203 84 8 5 155 14 210 6.58e-13 70.9
Msa0123340 MtrunA17_Chr1g0152981 28.426 197 78 9 5 152 12 194 5.15e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123340 AT2G31280.1 40.613 751 322 21 1 662 1 716 1.81e-146 443
Msa0123340 AT2G31280.3 39.714 768 322 22 1 662 1 733 3.02e-142 432
Msa0123340 AT2G31280.2 38.787 709 304 20 7 638 33 688 1.34e-119 373
Msa0123340 AT1G06150.2 49.757 412 180 10 261 663 341 734 1.84e-101 326
Msa0123340 AT1G06150.2 49.412 170 64 3 1 157 1 161 5.09e-40 157
Msa0123340 AT1G06150.1 49.515 412 179 11 261 663 341 732 1.10e-99 322
Msa0123340 AT1G06150.1 49.412 170 64 3 1 157 1 161 5.13e-40 157
Msa0123340 AT2G27230.2 39.744 312 157 8 352 659 336 620 7.00e-51 187
Msa0123340 AT2G27230.2 32.065 184 98 5 1 169 1 172 3.21e-20 95.9
Msa0123340 AT2G27230.1 39.744 312 157 8 352 659 336 620 7.00e-51 187
Msa0123340 AT2G27230.1 32.065 184 98 5 1 169 1 172 3.21e-20 95.9
Msa0123340 AT1G64625.3 46.196 184 82 2 476 659 327 493 1.12e-45 170
Msa0123340 AT1G64625.3 33.571 140 59 3 1 140 1 106 1.95e-14 77.0
Msa0123340 AT1G64625.1 46.196 184 82 2 476 659 351 517 1.80e-45 170
Msa0123340 AT1G64625.1 32.484 157 62 5 1 140 1 130 8.30e-13 71.6
Msa0123340 AT1G64625.2 46.196 184 82 2 476 659 341 507 1.84e-45 170
Msa0123340 AT1G64625.2 33.333 150 60 4 1 140 1 120 6.53e-14 75.1
Msa0123340 AT1G64625.4 56.977 86 32 1 476 561 341 421 3.25e-24 106
Msa0123340 AT1G64625.4 33.333 150 60 4 1 140 1 120 2.24e-14 76.3
Msa0123340 AT3G15240.2 27.660 188 86 5 5 155 34 208 5.89e-14 74.3
Msa0123340 AT5G53900.2 27.094 203 103 7 5 172 21 213 2.50e-13 72.8

Find 193 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCAGCATACTTTATTTA+AGG 0.129093 1_3:-50357925 None:intergenic
TGTATGAAATTGAGTGTTTA+AGG 0.160000 1_3:-50356142 None:intergenic
ATTTATAATAACCCTTTATT+TGG 0.175519 1_3:+50356569 Msa0123340:five_prime_UTR
GAAAGAAAGTGTAAAGTTTA+AGG 0.181871 1_3:-50356076 None:intergenic
AAAATTGTGAACTGAGTAAA+AGG 0.202438 1_3:-50356104 None:intergenic
TGGGAAGAATCACAATTATC+AGG 0.237556 1_3:-50357422 None:intergenic
CTCCCAAGACTTCTTTGCTT+GGG 0.244686 1_3:-50361369 None:intergenic
CTTTAACACCCTCCAAATAA+AGG 0.255312 1_3:-50356581 None:intergenic
TGATGGACTTGTTAAATCTT+TGG 0.262539 1_3:-50359034 None:intergenic
GAAAGAAAAGCTCACTGTTT+TGG 0.264233 1_3:-50355981 None:intergenic
ATCTCGTCCGGAACATCTTT+TGG 0.269914 1_3:+50359281 Msa0123340:CDS
TTTGGAGGGTGTTAAAGTTT+TGG 0.281930 1_3:+50356587 Msa0123340:five_prime_UTR
CTACAATATCATTATTACTA+TGG 0.303371 1_3:-50359326 None:intergenic
TATGTACATTTCTGTTGTTT+TGG 0.304838 1_3:-50361183 None:intergenic
TCTTAGTAGTTGATGCAAAT+TGG 0.311091 1_3:-50356641 None:intergenic
GGGTAGGGATAGGTTGTTAT+TGG 0.323501 1_3:+50356371 Msa0123340:five_prime_UTR
CATCATAGTTTGAGTTTGTC+AGG 0.324738 1_3:+50359492 Msa0123340:CDS
ATTGGAAGTATGCTATCTTT+TGG 0.326772 1_3:+50356683 Msa0123340:CDS
CTTCTGCTATCTCAAGAAAA+TGG 0.337897 1_3:-50360879 None:intergenic
AATTTCAAGCCCCTCGTGTT+TGG 0.340965 1_3:-50358815 None:intergenic
GTTGGACAGGTAGCTGTTAC+TGG 0.341561 1_3:+50357657 Msa0123340:CDS
CTCTGATTATCAACAACAAC+AGG 0.341637 1_3:+50360641 Msa0123340:CDS
AGCCTTCTGAATTAATATTT+CGG 0.342951 1_3:-50359428 None:intergenic
TCTATTCGTGATCACACATT+AGG 0.346800 1_3:+50358646 Msa0123340:CDS
CTTCTTTGCTTGGGGAAAGC+AGG 0.352198 1_3:-50361360 None:intergenic
TACATAGACTGGACATCTTA+TGG 0.354256 1_3:+50361200 Msa0123340:CDS
GAATTTGAGGTTCGAAGGTT+GGG 0.363573 1_3:+50356325 Msa0123340:five_prime_UTR
GTGTGTTACGTTTCACGCTT+TGG 0.365954 1_3:-50358687 None:intergenic
GACGGGTGAAACACTTGATA+TGG 0.366173 1_3:+50358720 Msa0123340:CDS
TCACACATCCTTTCATTTGA+AGG 0.372706 1_3:-50358919 None:intergenic
CAAGATACCTTTGCTCCGTT+TGG 0.374894 1_3:-50359705 None:intergenic
TTTCTGCTTTCTCTTGCTTT+CGG 0.376048 1_3:-50355950 None:intergenic
CCGTATCATGTATATTCGTT+AGG 0.377911 1_3:+50357530 Msa0123340:CDS
AGTTGTCTGTCCCTTGGTCT+AGG 0.381960 1_3:-50359645 None:intergenic
CAGCATGCTTAGTTACGCTT+TGG 0.384514 1_3:-50359888 None:intergenic
ACTTGGTAAACACAACAATA+TGG 0.387082 1_3:-50361569 None:intergenic
AGAAGAAAGAGAGTGTGTTT+TGG 0.391723 1_3:-50355921 None:intergenic
TCATGAATGTGTGGTGCTCT+TGG 0.391843 1_3:-50361245 None:intergenic
GCCTTTGTTTGGATACTGAT+TGG 0.393403 1_3:+50356665 Msa0123340:CDS
ACTGATCCAAGACCGTATTA+AGG 0.395166 1_3:+50359665 Msa0123340:CDS
TTTAACACCCTCCAAATAAA+GGG 0.396110 1_3:-50356580 None:intergenic
ACTACTAAGAAGCCTTTGTT+TGG 0.398957 1_3:+50356654 Msa0123340:CDS
GTAGAAAATCTTAGTAAGAA+TGG 0.406604 1_3:+50360717 Msa0123340:CDS
TCTCCCAAGACTTCTTTGCT+TGG 0.415830 1_3:-50361370 None:intergenic
TCATTATGAACAGAAACTTC+AGG 0.416026 1_3:-50359405 None:intergenic
CGTATCATGTATATTCGTTA+GGG 0.420977 1_3:+50357531 Msa0123340:CDS
TTAACTCCTTAATACGGTCT+TGG 0.421661 1_3:-50359671 None:intergenic
AGCAGAAGCCGTAAGAAGCT+TGG 0.422035 1_3:+50360894 Msa0123340:CDS
AACTGCGCAGTTGCATCATA+TGG 0.422500 1_3:+50360599 Msa0123340:intron
GTATGAAATTGAGTGTTTAA+GGG 0.427711 1_3:-50356141 None:intergenic
ATTATTACTATGGCAAACTT+TGG 0.428962 1_3:-50359316 None:intergenic
CGTCAGTCCCAAGCTTCTTA+CGG 0.431906 1_3:-50360902 None:intergenic
TGGATCAGTTGTCTGTCCCT+TGG 0.434072 1_3:-50359651 None:intergenic
TTCCCCAAGCAAAGAAGTCT+TGG 0.434452 1_3:+50361366 Msa0123340:three_prime_UTR
CTTGAAATTGACAGCGATCA+AGG 0.439876 1_3:+50358829 Msa0123340:CDS
TAGAAAATCTTAGTAAGAAT+GGG 0.442335 1_3:+50360718 Msa0123340:CDS
GTTCTGAGAGCACATACTTT+GGG 0.443847 1_3:-50357441 None:intergenic
AGAATTTGAGGTTCGAAGGT+TGG 0.447143 1_3:+50356324 Msa0123340:five_prime_UTR
GTGGAAGAAGGTGAAGAAGA+TGG 0.448644 1_3:+50356615 Msa0123340:exon
GACGAGATTCAAAAGTCAAT+TGG 0.450977 1_3:-50359266 None:intergenic
CTAGGCCAGGTGAAAGTTGT+AGG 0.452487 1_3:+50359622 Msa0123340:CDS
TATAATAACCCTTTATTTGG+AGG 0.454693 1_3:+50356572 Msa0123340:five_prime_UTR
TGTTCTGAGAGCACATACTT+TGG 0.455292 1_3:-50357442 None:intergenic
CCACTTGGAGTTGTTCAACT+TGG 0.456296 1_3:+50357900 Msa0123340:CDS
CGGTCGGACCGCCATTAAAA+CGG 0.458939 1_3:+50356397 Msa0123340:five_prime_UTR
TTGGGAGAAGGAAACTTGTT+GGG 0.466698 1_3:+50361385 Msa0123340:three_prime_UTR
CGCTTTGGATTTGACTAGGA+AGG 0.470186 1_3:-50358672 None:intergenic
CTTGGGAGAAGGAAACTTGT+TGG 0.472420 1_3:+50361384 Msa0123340:three_prime_UTR
GTTCTCTTAACTCCTTAATA+CGG 0.473917 1_3:-50359677 None:intergenic
GTTCAGAAGACCTCTCAAAC+TGG 0.474775 1_3:-50359575 None:intergenic
TTCTTTGCTTGGGGAAAGCA+GGG 0.475732 1_3:-50361359 None:intergenic
CAACAGAAATGTACATAGAC+TGG 0.476550 1_3:+50361189 Msa0123340:CDS
GCAGAAGCCGTAAGAAGCTT+GGG 0.478373 1_3:+50360895 Msa0123340:CDS
AGGAAATTTCAATGTGTATG+AGG 0.478639 1_3:-50359118 None:intergenic
CCGCCATTAAAACGGCGAGC+AGG 0.478662 1_3:+50356405 Msa0123340:five_prime_UTR
CATATGGAAAATGACATTCA+TGG 0.481714 1_3:+50360615 Msa0123340:CDS
GTAACGCCCTTCCAATGTCC+TGG 0.482137 1_3:+50358742 Msa0123340:CDS
TCCTGTTTCTACAGTATGGT+TGG 0.484140 1_3:+50357639 Msa0123340:intron
TTTCTACAGTATGGTTGGAC+AGG 0.486471 1_3:+50357644 Msa0123340:intron
TCCCCAAGCAAAGAAGTCTT+GGG 0.486968 1_3:+50361367 Msa0123340:three_prime_UTR
ATTGAAATTGCAAGCTTCCA+TGG 0.489226 1_3:-50356234 None:intergenic
TATTAAGGAGTTAAGAGAAC+TGG 0.491639 1_3:+50359680 Msa0123340:CDS
AAGTGAGTGAGAGGTGTGAT+GGG 0.491855 1_3:+50356351 Msa0123340:five_prime_UTR
AGGATCCTCACCTTAAAAGA+TGG 0.491951 1_3:-50357726 None:intergenic
CGCCATTAAAACGGCGAGCA+GGG 0.495030 1_3:+50356406 Msa0123340:five_prime_UTR
ACAACAACAGGGTTCAAGTT+GGG 0.495964 1_3:+50360653 Msa0123340:CDS
ATGTGTGAAGGGAACAATAA+TGG 0.497231 1_3:+50358934 Msa0123340:CDS
ATAGAGGAAGCTAAAGCAAA+GGG 0.498802 1_3:+50356460 Msa0123340:five_prime_UTR
TAAAACGGCGAGCAGGGTTG+AGG 0.498874 1_3:+50356412 Msa0123340:five_prime_UTR
TCCCAAGACTTCTTTGCTTG+GGG 0.500375 1_3:-50361368 None:intergenic
GAGTGAGAGGTGTGATGGGT+AGG 0.500760 1_3:+50356355 Msa0123340:five_prime_UTR
GGTAAACACAACAATATGGT+TGG 0.502494 1_3:-50361565 None:intergenic
TGGAAGAAGGTGAAGAAGAT+GGG 0.503602 1_3:+50356616 Msa0123340:exon
TACACATTGAAATTTCCTGC+TGG 0.505845 1_3:+50359123 Msa0123340:CDS
GAGACTAGGGACTAGGGACT+AGG 0.509632 1_3:+50356539 Msa0123340:five_prime_UTR
CTTGGGGAAAGCAGGGAGGA+AGG 0.511468 1_3:-50361352 None:intergenic
TGACATCGATTGAAGCAAGA+TGG 0.514120 1_3:-50358854 None:intergenic
AAATTGTGAACTGAGTAAAA+GGG 0.516260 1_3:-50356103 None:intergenic
GAAGTGAGTGAGAGGTGTGA+TGG 0.517684 1_3:+50356350 Msa0123340:five_prime_UTR
ATCAAGTGTTTCACCCGTCA+TGG 0.518290 1_3:-50358716 None:intergenic
ATAATAACCCTTTATTTGGA+GGG 0.518524 1_3:+50356573 Msa0123340:five_prime_UTR
TTACTCTCTTTGAGAAAACC+TGG 0.521989 1_3:-50359171 None:intergenic
TTGAAGAATTTGAGGTTCGA+AGG 0.524148 1_3:+50356320 Msa0123340:five_prime_UTR
GTTGGGAGGAAGTGAGTGAG+AGG 0.526894 1_3:+50356342 Msa0123340:five_prime_UTR
CTGACAAACTCAAACTATGA+TGG 0.527690 1_3:-50359491 None:intergenic
GTGGTGGTGGGAGAGAGACT+AGG 0.528783 1_3:+50356525 Msa0123340:five_prime_UTR
ATGTATATTCGTTAGGGGAA+GGG 0.529135 1_3:+50357537 Msa0123340:CDS
CCTAACGAATATACATGATA+CGG 0.532424 1_3:-50357530 None:intergenic
ATCATTTCCTACATCAGTGC+AGG 0.536203 1_3:+50359359 Msa0123340:CDS
GTGCAGTATTGATTCACTGT+TGG 0.539514 1_3:+50359837 Msa0123340:intron
ACTGCTTCCAAAAGATGTTC+CGG 0.539659 1_3:-50359288 None:intergenic
GGGAAGAATCACAATTATCA+GGG 0.539821 1_3:-50357421 None:intergenic
AGGAGGAAACAAGCTGGAAG+AGG 0.540000 1_3:+50356432 Msa0123340:five_prime_UTR
TAATGATATTGTAGATAATG+AGG 0.540266 1_3:+50359335 Msa0123340:CDS
ACAGGGTTCAAGTTGGGCAA+TGG 0.540297 1_3:+50360659 Msa0123340:CDS
AGTGAGAGGTGTGATGGGTA+GGG 0.540634 1_3:+50356356 Msa0123340:five_prime_UTR
ACCTTGGAGCAGATCTATGT+TGG 0.541880 1_3:+50357464 Msa0123340:CDS
GCTGGAAGAGGGTCTTATAG+AGG 0.541887 1_3:+50356444 Msa0123340:five_prime_UTR
CATGTATATTCGTTAGGGGA+AGG 0.541965 1_3:+50357536 Msa0123340:CDS
GCAGAGAATACGAAACAAGT+AGG 0.544022 1_3:+50358889 Msa0123340:CDS
GGGAGAGAGACTAGGGACTA+GGG 0.544380 1_3:+50356533 Msa0123340:five_prime_UTR
TCAACCATCTCATATTAAAG+AGG 0.552455 1_3:+50359461 Msa0123340:CDS
AGACTAGGGACTAGGGACTA+GGG 0.553599 1_3:+50356540 Msa0123340:five_prime_UTR
AACAACAACAGGGTTCAAGT+TGG 0.556005 1_3:+50360652 Msa0123340:CDS
ATCATAGTTTGAGTTTGTCA+GGG 0.556500 1_3:+50359493 Msa0123340:CDS
ATATCCTCTTTAATATGAGA+TGG 0.557881 1_3:-50359465 None:intergenic
TTGGGGAAAGCAGGGAGGAA+GGG 0.558206 1_3:-50361351 None:intergenic
TTACATGAAGCACTTGGACC+AGG 0.559643 1_3:+50359153 Msa0123340:CDS
TTTGAGGTTCGAAGGTTGGG+AGG 0.560314 1_3:+50356328 Msa0123340:five_prime_UTR
TGGTGGTGGGAGAGAGACTA+GGG 0.560673 1_3:+50356526 Msa0123340:five_prime_UTR
GGATAGGTTGTTATTGGCAA+CGG 0.562235 1_3:+50356377 Msa0123340:five_prime_UTR
GACCGAAATATTAATTCAGA+AGG 0.563885 1_3:+50359426 Msa0123340:CDS
CAAATGAAAGGATGTGTGAA+GGG 0.564926 1_3:+50358923 Msa0123340:CDS
AATTGTGAACTGAGTAAAAG+GGG 0.565128 1_3:-50356102 None:intergenic
TCAAGTTGGGCAATGGAGGT+AGG 0.566298 1_3:+50360666 Msa0123340:CDS
AGCAAAGAAGTCTTGGGAGA+AGG 0.568917 1_3:+50361373 Msa0123340:three_prime_UTR
GGATGAAACCTTCAAATGAA+AGG 0.568936 1_3:+50358911 Msa0123340:CDS
TCAGAAAATGACTATTGATG+TGG 0.577639 1_3:+50358792 Msa0123340:CDS
TGGGAGAGAGACTAGGGACT+AGG 0.579198 1_3:+50356532 Msa0123340:five_prime_UTR
TTGCTTGCAGGATCTTGACA+TGG 0.580291 1_3:+50357378 Msa0123340:intron
TCATGTAACTCATAACCAGC+AGG 0.580707 1_3:-50359138 None:intergenic
AACGGCGAGCAGGGTTGAGG+AGG 0.581208 1_3:+50356415 Msa0123340:five_prime_UTR
CTAGGCCTACAACTTTCACC+TGG 0.582898 1_3:-50359627 None:intergenic
TTCACGCTTTGGATTTGACT+AGG 0.583058 1_3:-50358676 None:intergenic
AACACACAGAAAACCATGAC+GGG 0.583428 1_3:+50358703 Msa0123340:CDS
GACTGCAATAATTGAACAAG+CGG 0.583493 1_3:-50361223 None:intergenic
GGGTTCAAGTTGGGCAATGG+AGG 0.584395 1_3:+50360662 Msa0123340:CDS
GAGGTGTGATGGGTAGGGAT+AGG 0.587096 1_3:+50356361 Msa0123340:five_prime_UTR
GGGTTGAGGAGGAAACAAGC+TGG 0.587284 1_3:+50356426 Msa0123340:five_prime_UTR
TCAAATGAAAGGATGTGTGA+AGG 0.588450 1_3:+50358922 Msa0123340:CDS
TAACGCCCTTCCAATGTCCT+GGG 0.589847 1_3:+50358743 Msa0123340:CDS
TATAGAGGAAGCTAAAGCAA+AGG 0.591156 1_3:+50356459 Msa0123340:five_prime_UTR
CAGAGAATACGAAACAAGTA+GGG 0.591572 1_3:+50358890 Msa0123340:CDS
CTGTTGTTGTTGATAATCAG+AGG 0.593214 1_3:-50360640 None:intergenic
TTAAGAGAACTGGTGCCAAA+CGG 0.593259 1_3:+50359690 Msa0123340:CDS
ATTGTGTCCTGCACTGATGT+AGG 0.598822 1_3:-50359366 None:intergenic
TTAGCTTATATCTGAAGACA+TGG 0.601138 1_3:-50356193 None:intergenic
ACTGGTGCCAAACGGAGCAA+AGG 0.604316 1_3:+50359698 Msa0123340:CDS
AAATTGATATCAAAATGCTA+AGG 0.610506 1_3:-50361426 None:intergenic
TATGAGTTACATGAAGCACT+TGG 0.610930 1_3:+50359147 Msa0123340:CDS
TATTGATGTGGCCAAACACG+AGG 0.617153 1_3:+50358804 Msa0123340:CDS
TGCTTGCAGGATCTTGACAT+GGG 0.618674 1_3:+50357379 Msa0123340:intron
AGGTTGTTATTGGCAACGGT+CGG 0.619266 1_3:+50356381 Msa0123340:five_prime_UTR
TCCAATCAGTATCCAAACAA+AGG 0.620757 1_3:-50356666 None:intergenic
TTGAGTTTGTCAGGGATCTG+CGG 0.621537 1_3:+50359501 Msa0123340:CDS
GGAGGAAACAAGCTGGAAGA+GGG 0.623624 1_3:+50356433 Msa0123340:five_prime_UTR
AAAGTTGTAGGCCTAGACCA+AGG 0.627816 1_3:+50359634 Msa0123340:CDS
TACATCAGTGCAGGACACAA+TGG 0.629927 1_3:+50359368 Msa0123340:CDS
AATGCAGGTTGGTGAAGACA+TGG 0.636281 1_3:+50358591 Msa0123340:intron
AACTGGTTACTACACGAGCT+AGG 0.639086 1_3:-50359558 None:intergenic
GAATGGGCAGATGCTTGTTG+AGG 0.640182 1_3:+50360734 Msa0123340:CDS
GTCGTAGCAGTACTACCACT+TGG 0.641686 1_3:+50357885 Msa0123340:CDS
CTGTTACTGGAAAACATCAG+TGG 0.641892 1_3:+50357670 Msa0123340:CDS
TCCAACATAGATCTGCTCCA+AGG 0.643426 1_3:-50357465 None:intergenic
AGTTGGGCAATGGAGGTAGG+AGG 0.643833 1_3:+50360669 Msa0123340:CDS
CGTGTAGTAACCAGTTTGAG+AGG 0.651078 1_3:+50359565 Msa0123340:CDS
AAGTTGTAGGCCTAGACCAA+GGG 0.652681 1_3:+50359635 Msa0123340:CDS
TCGCAACAGATAATCCTAGA+GGG 0.655424 1_3:-50357502 None:intergenic
TTCGCAACAGATAATCCTAG+AGG 0.664107 1_3:-50357503 None:intergenic
TTGCAGGATCTTGACATGGG+AGG 0.664946 1_3:+50357382 Msa0123340:intron
TAACACACAGAAAACCATGA+CGG 0.666602 1_3:+50358702 Msa0123340:CDS
TGCAGGTTGGTGAAGACATG+GGG 0.669819 1_3:+50358593 Msa0123340:intron
ATGCAGGTTGGTGAAGACAT+GGG 0.672643 1_3:+50358592 Msa0123340:intron
ATTGATGTGGCCAAACACGA+GGG 0.677054 1_3:+50358805 Msa0123340:CDS
AAACATTTATCATGAATGTG+TGG 0.685784 1_3:-50361254 None:intergenic
CCAAGTTGAACAACTCCAAG+TGG 0.686515 1_3:-50357900 None:intergenic
TTTGCTTGGGGAAAGCAGGG+AGG 0.694219 1_3:-50361356 None:intergenic
TTGATGTGGCCAAACACGAG+GGG 0.694860 1_3:+50358806 Msa0123340:CDS
TATGTGCTCTCAGAACACCT+TGG 0.696188 1_3:+50357448 Msa0123340:CDS
CATGCTACAGATGCTCTGTG+AGG 0.715737 1_3:+50360849 Msa0123340:intron
GTATCATGTATATTCGTTAG+GGG 0.726980 1_3:+50357532 Msa0123340:CDS
TCTGATTATCAACAACAACA+GGG 0.741738 1_3:+50360642 Msa0123340:CDS
AACGGTGCAAGTGAAGCTCG+TGG 0.750508 1_3:+50360931 Msa0123340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATAAAGAATAA+TGG - chr1_3:50358031-50358050 None:intergenic 10.0%
!! ATATTTGACATAAAATATAA+AGG + chr1_3:50358322-50358341 Msa0123340:intron 10.0%
!! ATTGATGTTTATAAAATTAA+GGG - chr1_3:50360427-50360446 None:intergenic 10.0%
!! TATTGATGTTTATAAAATTA+AGG - chr1_3:50360428-50360447 None:intergenic 10.0%
!!! CAAAGATTATATAAATTTTC+TGG + chr1_3:50356026-50356045 Msa0123340:five_prime_UTR 15.0%
!!! AAAATTGTATTTTTAATCCA+TGG + chr1_3:50356217-50356236 Msa0123340:five_prime_UTR 15.0%
!! ATTTATAATAACCCTTTATT+TGG + chr1_3:50356569-50356588 Msa0123340:five_prime_UTR 15.0%
!! TTCTTAATTCAATATCTAAA+AGG - chr1_3:50356945-50356964 None:intergenic 15.0%
!!! TTTTAGATATTGAATTAAGA+AGG + chr1_3:50356944-50356963 Msa0123340:intron 15.0%
!! TTTAGATATTGAATTAAGAA+GGG + chr1_3:50356945-50356964 Msa0123340:intron 15.0%
!! AAGAAATTTAAGCATTAAAA+GGG - chr1_3:50357966-50357985 None:intergenic 15.0%
!! AATTAGGAGATTATATAAAT+GGG - chr1_3:50358129-50358148 None:intergenic 15.0%
!! AAATTAGGAGATTATATAAA+TGG - chr1_3:50358130-50358149 None:intergenic 15.0%
!! TTTATATAATCTCCTAATTT+CGG + chr1_3:50358130-50358149 Msa0123340:intron 15.0%
!! TTTGCTTATTATGTATAATA+AGG - chr1_3:50358206-50358225 None:intergenic 15.0%
!!! TATGTCAAATATATTAGTTT+TGG - chr1_3:50358314-50358333 None:intergenic 15.0%
!!! AATGCCATTATTTTATTATT+GGG - chr1_3:50360026-50360045 None:intergenic 15.0%
!!! AAATGCCATTATTTTATTAT+TGG - chr1_3:50360027-50360046 None:intergenic 15.0%
!!! AATTTTCAAAACATTGTTTT+CGG - chr1_3:50360316-50360335 None:intergenic 15.0%
!!! TATTTTTGAAAATTCTCATC+TGG + chr1_3:50356165-50356184 Msa0123340:five_prime_UTR 20.0%
!!! ATTTTTGAAAATTCTCATCT+GGG + chr1_3:50356166-50356185 Msa0123340:five_prime_UTR 20.0%
!!! AGAATTTTTTGAAGAATTTG+AGG + chr1_3:50356312-50356331 Msa0123340:five_prime_UTR 20.0%
!! AAACATTATGGAAATTAGAA+AGG - chr1_3:50356850-50356869 None:intergenic 20.0%
!!! TCAAGAATCAATTTTAGATT+TGG + chr1_3:50356981-50357000 Msa0123340:intron 20.0%
!!! CAATTTTAGATTTGGTTTTA+AGG + chr1_3:50356989-50357008 Msa0123340:intron 20.0%
!! CATATGAAATTTAACTCATT+GGG - chr1_3:50357326-50357345 None:intergenic 20.0%
!! ACATATGAAATTTAACTCAT+TGG - chr1_3:50357327-50357346 None:intergenic 20.0%
!!! CTTATCTTAACATGTTTTAT+TGG + chr1_3:50357347-50357366 Msa0123340:intron 20.0%
!! CAAGAAATTTAAGCATTAAA+AGG - chr1_3:50357967-50357986 None:intergenic 20.0%
!!! TAAAGGCATATAATTTTTAG+TGG + chr1_3:50358339-50358358 Msa0123340:intron 20.0%
!! ATGTAGTTGAATAAATTTGA+CGG + chr1_3:50358474-50358493 Msa0123340:intron 20.0%
!!! ATTAACATTTTGCTAACAAA+TGG - chr1_3:50358545-50358564 None:intergenic 20.0%
!!! AAGAGAGTAAATATTTTGAT+TGG + chr1_3:50359184-50359203 Msa0123340:CDS 20.0%
!! CTACAATATCATTATTACTA+TGG - chr1_3:50359329-50359348 None:intergenic 20.0%
!! TAATGATATTGTAGATAATG+AGG + chr1_3:50359335-50359354 Msa0123340:CDS 20.0%
!!! ATTTTCTAAAACAAAGACAA+AGG + chr1_3:50359924-50359943 Msa0123340:CDS 20.0%
!! TCTTCCCAATAATAAAATAA+TGG + chr1_3:50360019-50360038 Msa0123340:intron 20.0%
!! AAACATCAATAAGTATGAAA+TGG + chr1_3:50360437-50360456 Msa0123340:intron 20.0%
!! TAGAAAATCTTAGTAAGAAT+GGG + chr1_3:50360718-50360737 Msa0123340:CDS 20.0%
!! AAATTGATATCAAAATGCTA+AGG - chr1_3:50361429-50361448 None:intergenic 20.0%
!! AACACAAAAAGACAAAATAA+TGG - chr1_3:50361479-50361498 None:intergenic 20.0%
!!! TTGTCTTTTTGTGTTTATAT+TGG + chr1_3:50361484-50361503 Msa0123340:three_prime_UTR 20.0%
!! GAAAGAAAGTGTAAAGTTTA+AGG - chr1_3:50356079-50356098 None:intergenic 25.0%
! AAATTGTGAACTGAGTAAAA+GGG - chr1_3:50356106-50356125 None:intergenic 25.0%
! AAAATTGTGAACTGAGTAAA+AGG - chr1_3:50356107-50356126 None:intergenic 25.0%
! GTATGAAATTGAGTGTTTAA+GGG - chr1_3:50356144-50356163 None:intergenic 25.0%
! TGTATGAAATTGAGTGTTTA+AGG - chr1_3:50356145-50356164 None:intergenic 25.0%
!!! AATGCTTGTGATAGTTTTAT+TGG + chr1_3:50356254-50356273 Msa0123340:five_prime_UTR 25.0%
!!! TTTGTTGCTTTTTTTGTTGT+TGG + chr1_3:50356485-50356504 Msa0123340:five_prime_UTR 25.0%
!!! TTGTTGGTTTCTTTTTTTGA+GGG + chr1_3:50356501-50356520 Msa0123340:five_prime_UTR 25.0%
!! TATAATAACCCTTTATTTGG+AGG + chr1_3:50356572-50356591 Msa0123340:five_prime_UTR 25.0%
!! ATAATAACCCTTTATTTGGA+GGG + chr1_3:50356573-50356592 Msa0123340:five_prime_UTR 25.0%
!!! TGTTAAAGTTTTGGTTTTTG+TGG + chr1_3:50356596-50356615 Msa0123340:five_prime_UTR 25.0%
! ATGAAAATCAGCAAACATTA+TGG - chr1_3:50356862-50356881 None:intergenic 25.0%
! CTGATACCAACTAAAAATTT+GGG - chr1_3:50357177-50357196 None:intergenic 25.0%
! TCTGATACCAACTAAAAATT+TGG - chr1_3:50357178-50357197 None:intergenic 25.0%
! TTTAATCTTAAACTGCATCT+AGG - chr1_3:50357589-50357608 None:intergenic 25.0%
!!! AATTTCTAGTCCATCTTTTA+AGG + chr1_3:50357716-50357735 Msa0123340:CDS 25.0%
!! TAGTCAGCATACTTTATTTA+AGG - chr1_3:50357928-50357947 None:intergenic 25.0%
!! GTTTTTACACAATTCAGTTA+TGG + chr1_3:50358999-50359018 Msa0123340:CDS 25.0%
!!! GAGTAAATATTTTGATTGGA+CGG + chr1_3:50359188-50359207 Msa0123340:CDS 25.0%
! ATTATTACTATGGCAAACTT+TGG - chr1_3:50359319-50359338 None:intergenic 25.0%
! AGCCTTCTGAATTAATATTT+CGG - chr1_3:50359431-50359450 None:intergenic 25.0%
! ATATCCTCTTTAATATGAGA+TGG - chr1_3:50359468-50359487 None:intergenic 25.0%
!! ATGTAGAAGAAAAACTTTTG+GGG - chr1_3:50359536-50359555 None:intergenic 25.0%
!! CATGTAGAAGAAAAACTTTT+GGG - chr1_3:50359537-50359556 None:intergenic 25.0%
!! ACATGTAGAAGAAAAACTTT+TGG - chr1_3:50359538-50359557 None:intergenic 25.0%
! ATCTAAAAACAGCAAAAAGA+GGG + chr1_3:50359599-50359618 Msa0123340:CDS 25.0%
!!! ATTACATACATTGATTTGAG+TGG + chr1_3:50360076-50360095 Msa0123340:intron 25.0%
!! AGTTAGAGAAAATGCATTTT+TGG + chr1_3:50360285-50360304 Msa0123340:intron 25.0%
! TCAGTGAAAATAGAAACAAA+CGG + chr1_3:50360400-50360419 Msa0123340:intron 25.0%
! CTCATTGTAAAATTGTTGTA+GGG - chr1_3:50360526-50360545 None:intergenic 25.0%
!! ATACTGAATGAATTTTCAGA+TGG - chr1_3:50360695-50360714 None:intergenic 25.0%
! GTAGAAAATCTTAGTAAGAA+TGG + chr1_3:50360717-50360736 Msa0123340:CDS 25.0%
!! TCTAGAAAGAGTATATGTAA+AGG - chr1_3:50360783-50360802 None:intergenic 25.0%
! CGTAAAACTATTATGCATTA+TGG + chr1_3:50361107-50361126 Msa0123340:intron 25.0%
!!! TATGTACATTTCTGTTGTTT+TGG - chr1_3:50361186-50361205 None:intergenic 25.0%
! AAACATTTATCATGAATGTG+TGG - chr1_3:50361257-50361276 None:intergenic 25.0%
!!! GCATTTTGATATCAATTTCA+TGG + chr1_3:50361431-50361450 Msa0123340:three_prime_UTR 25.0%
!! TTTTGATATCAATTTCATGG+AGG + chr1_3:50361434-50361453 Msa0123340:three_prime_UTR 25.0%
!! TTTTAAACTCACTAAAGACT+TGG - chr1_3:50361589-50361608 None:intergenic 25.0%
AATTGTGAACTGAGTAAAAG+GGG - chr1_3:50356105-50356124 None:intergenic 30.0%
TTAGCTTATATCTGAAGACA+TGG - chr1_3:50356196-50356215 None:intergenic 30.0%
!!! GTTGTTGGTTTCTTTTTTTG+AGG + chr1_3:50356500-50356519 Msa0123340:five_prime_UTR 30.0%
!!! TGTTGGTTTCTTTTTTTGAG+GGG + chr1_3:50356502-50356521 Msa0123340:five_prime_UTR 30.0%
TTTAACACCCTCCAAATAAA+GGG - chr1_3:50356583-50356602 None:intergenic 30.0%
! TCTTAGTAGTTGATGCAAAT+TGG - chr1_3:50356644-50356663 None:intergenic 30.0%
!! ATTGGAAGTATGCTATCTTT+TGG + chr1_3:50356683-50356702 Msa0123340:CDS 30.0%
!!! TGCTGATTTTCATGTTATAG+AGG + chr1_3:50356869-50356888 Msa0123340:intron 30.0%
TTCATGTTATAGAGGTTTCT+TGG + chr1_3:50356877-50356896 Msa0123340:intron 30.0%
ATATTGAATTAAGAAGGGCA+TGG + chr1_3:50356950-50356969 Msa0123340:intron 30.0%
! TGTTCTACAAGCATTTTGTT+TGG + chr1_3:50357022-50357041 Msa0123340:intron 30.0%
!! ATTTTGACGTCATATCTGAT+TGG - chr1_3:50357094-50357113 None:intergenic 30.0%
CGTCAAAATGAGTTTAGAAA+CGG + chr1_3:50357105-50357124 Msa0123340:intron 30.0%
GTCAAAATGAGTTTAGAAAC+GGG + chr1_3:50357106-50357125 Msa0123340:intron 30.0%
TCAAAATGAGTTTAGAAACG+GGG + chr1_3:50357107-50357126 Msa0123340:intron 30.0%
TACCAACTAAAAATTTGGGT+TGG - chr1_3:50357173-50357192 None:intergenic 30.0%
!! CTTGCATTTGTTATGTTGTT+AGG + chr1_3:50357284-50357303 Msa0123340:intron 30.0%
!! CTTAACATGTTTTATTGGTG+TGG + chr1_3:50357352-50357371 Msa0123340:intron 30.0%
CCTAACGAATATACATGATA+CGG - chr1_3:50357533-50357552 None:intergenic 30.0%
CGTATCATGTATATTCGTTA+GGG + chr1_3:50357531-50357550 Msa0123340:CDS 30.0%
GTATCATGTATATTCGTTAG+GGG + chr1_3:50357532-50357551 Msa0123340:CDS 30.0%
AGTTGCATCATTGAAGAATA+AGG - chr1_3:50357749-50357768 None:intergenic 30.0%
TCCTGTATAGTAAGATTTGA+AGG + chr1_3:50357778-50357797 Msa0123340:intron 30.0%
AACAATTGTCTGTAAATGCA+AGG - chr1_3:50357865-50357884 None:intergenic 30.0%
TTTAAGCATTAAAAGGGACA+AGG - chr1_3:50357960-50357979 None:intergenic 30.0%
ATGTATAATAAGGACTGACA+GGG - chr1_3:50358196-50358215 None:intergenic 30.0%
TATGTATAATAAGGACTGAC+AGG - chr1_3:50358197-50358216 None:intergenic 30.0%
TAGCATGTAATTATTGTGCT+CGG + chr1_3:50358438-50358457 Msa0123340:intron 30.0%
!! TGACGGATTGTATAATAGTT+TGG + chr1_3:50358491-50358510 Msa0123340:intron 30.0%
!! GTCATTTTCTGATAAACAGT+AGG - chr1_3:50358784-50358803 None:intergenic 30.0%
TCAGAAAATGACTATTGATG+TGG + chr1_3:50358792-50358811 Msa0123340:CDS 30.0%
!! TGATGGACTTGTTAAATCTT+TGG - chr1_3:50359037-50359056 None:intergenic 30.0%
AGGAAATTTCAATGTGTATG+AGG - chr1_3:50359121-50359140 None:intergenic 30.0%
TCATTATGAACAGAAACTTC+AGG - chr1_3:50359408-50359427 None:intergenic 30.0%
GACCGAAATATTAATTCAGA+AGG + chr1_3:50359426-50359445 Msa0123340:CDS 30.0%
TCAACCATCTCATATTAAAG+AGG + chr1_3:50359461-50359480 Msa0123340:CDS 30.0%
! ATCATAGTTTGAGTTTGTCA+GGG + chr1_3:50359493-50359512 Msa0123340:CDS 30.0%
! TGTAGAAGAAAAACTTTTGG+GGG - chr1_3:50359535-50359554 None:intergenic 30.0%
!!! CTCTTTTTGCTGTTTTTAGA+TGG - chr1_3:50359600-50359619 None:intergenic 30.0%
CATCTAAAAACAGCAAAAAG+AGG + chr1_3:50359598-50359617 Msa0123340:CDS 30.0%
GTTCTCTTAACTCCTTAATA+CGG - chr1_3:50359680-50359699 None:intergenic 30.0%
TATTAAGGAGTTAAGAGAAC+TGG + chr1_3:50359680-50359699 Msa0123340:CDS 30.0%
!! TGCTTGTTCAATTGCTATTT+AGG + chr1_3:50359979-50359998 Msa0123340:intron 30.0%
!! ACATTGATTTGAGTGGAATT+AGG + chr1_3:50360083-50360102 Msa0123340:intron 30.0%
GTGATAACTAATGTTCATCA+AGG - chr1_3:50360162-50360181 None:intergenic 30.0%
CTTAACTGTGATAGAGAATA+TGG + chr1_3:50360257-50360276 Msa0123340:intron 30.0%
CCTCATTGTAAAATTGTTGT+AGG - chr1_3:50360527-50360546 None:intergenic 30.0%
! CCTACAACAATTTTACAATG+AGG + chr1_3:50360524-50360543 Msa0123340:intron 30.0%
CATATGGAAAATGACATTCA+TGG + chr1_3:50360615-50360634 Msa0123340:CDS 30.0%
TCTGATTATCAACAACAACA+GGG + chr1_3:50360642-50360661 Msa0123340:CDS 30.0%
! ATTCATGATAATGAGCGTAA+GGG - chr1_3:50360829-50360848 None:intergenic 30.0%
ACTTGGTAAACACAACAATA+TGG - chr1_3:50361572-50361591 None:intergenic 30.0%
!! AGAAGAAAGAGAGTGTGTTT+TGG - chr1_3:50355924-50355943 None:intergenic 35.0%
TTTCTGCTTTCTCTTGCTTT+CGG - chr1_3:50355953-50355972 None:intergenic 35.0%
! GAAAGAAAAGCTCACTGTTT+TGG - chr1_3:50355984-50356003 None:intergenic 35.0%
ATTGAAATTGCAAGCTTCCA+TGG - chr1_3:50356237-50356256 None:intergenic 35.0%
! TTGAAGAATTTGAGGTTCGA+AGG + chr1_3:50356320-50356339 Msa0123340:five_prime_UTR 35.0%
TATAGAGGAAGCTAAAGCAA+AGG + chr1_3:50356459-50356478 Msa0123340:five_prime_UTR 35.0%
ATAGAGGAAGCTAAAGCAAA+GGG + chr1_3:50356460-50356479 Msa0123340:five_prime_UTR 35.0%
!!! GTTGGTTTCTTTTTTTGAGG+GGG + chr1_3:50356503-50356522 Msa0123340:five_prime_UTR 35.0%
CTTTAACACCCTCCAAATAA+AGG - chr1_3:50356584-50356603 None:intergenic 35.0%
!!! TTTGGAGGGTGTTAAAGTTT+TGG + chr1_3:50356587-50356606 Msa0123340:five_prime_UTR 35.0%
!!! GTTTTGGTTTTTGTGGAAGA+AGG + chr1_3:50356603-50356622 Msa0123340:five_prime_UTR 35.0%
ACTACTAAGAAGCCTTTGTT+TGG + chr1_3:50356654-50356673 Msa0123340:CDS 35.0%
TCCAATCAGTATCCAAACAA+AGG - chr1_3:50356669-50356688 None:intergenic 35.0%
! TATAGAGGTTTCTTGGTGAT+TGG + chr1_3:50356884-50356903 Msa0123340:intron 35.0%
!!! ACCTTACAAGTTGGTTTTGT+GGG + chr1_3:50357136-50357155 Msa0123340:intron 35.0%
AGAGCCTATTCAATATCTGT+TGG + chr1_3:50357195-50357214 Msa0123340:intron 35.0%
GAGCCTATTCAATATCTGTT+GGG + chr1_3:50357196-50357215 Msa0123340:intron 35.0%
TTATGTCAAGACTTGACATC+TGG - chr1_3:50357253-50357272 None:intergenic 35.0%
GGGAAGAATCACAATTATCA+GGG - chr1_3:50357424-50357443 None:intergenic 35.0%
TGGGAAGAATCACAATTATC+AGG - chr1_3:50357425-50357444 None:intergenic 35.0%
CCGTATCATGTATATTCGTT+AGG + chr1_3:50357530-50357549 Msa0123340:CDS 35.0%
ATGTATATTCGTTAGGGGAA+GGG + chr1_3:50357537-50357556 Msa0123340:CDS 35.0%
TACTGTAGAAACAGGACATT+AGG - chr1_3:50357635-50357654 None:intergenic 35.0%
!! AATGTCCTGTTTCTACAGTA+TGG + chr1_3:50357635-50357654 Msa0123340:intron 35.0%
TCAATGATGCAACTTGCATT+TGG + chr1_3:50357755-50357774 Msa0123340:intron 35.0%
GCCTTCAAATCTTACTATAC+AGG - chr1_3:50357782-50357801 None:intergenic 35.0%
! AAGATTTGAAGGCGTGTAAT+TGG + chr1_3:50357789-50357808 Msa0123340:intron 35.0%
TCCTAATTTCGGTAATTGCT+TGG + chr1_3:50358141-50358160 Msa0123340:intron 35.0%
ACCAAGCAATTACCGAAATT+AGG - chr1_3:50358145-50358164 None:intergenic 35.0%
TAATTTCGGTAATTGCTTGG+TGG + chr1_3:50358144-50358163 Msa0123340:intron 35.0%
TCTATTCGTGATCACACATT+AGG + chr1_3:50358646-50358665 Msa0123340:CDS 35.0%
TAACACACAGAAAACCATGA+CGG + chr1_3:50358702-50358721 Msa0123340:CDS 35.0%
CAGAGAATACGAAACAAGTA+GGG + chr1_3:50358890-50358909 Msa0123340:CDS 35.0%
GGATGAAACCTTCAAATGAA+AGG + chr1_3:50358911-50358930 Msa0123340:CDS 35.0%
TCACACATCCTTTCATTTGA+AGG - chr1_3:50358922-50358941 None:intergenic 35.0%
TCAAATGAAAGGATGTGTGA+AGG + chr1_3:50358922-50358941 Msa0123340:CDS 35.0%
CAAATGAAAGGATGTGTGAA+GGG + chr1_3:50358923-50358942 Msa0123340:CDS 35.0%
ATGTGTGAAGGGAACAATAA+TGG + chr1_3:50358934-50358953 Msa0123340:CDS 35.0%
! AACGATGAGACATTTTTGTC+TGG - chr1_3:50358982-50359001 None:intergenic 35.0%
! TCAGCTTCTACATTTTCTGA+TGG - chr1_3:50359054-50359073 None:intergenic 35.0%
TACACATTGAAATTTCCTGC+TGG + chr1_3:50359123-50359142 Msa0123340:CDS 35.0%
! TATGAGTTACATGAAGCACT+TGG + chr1_3:50359147-50359166 Msa0123340:CDS 35.0%
! TTACTCTCTTTGAGAAAACC+TGG - chr1_3:50359174-50359193 None:intergenic 35.0%
!!! TATTTTGATTGGACGGTACA+AGG + chr1_3:50359195-50359214 Msa0123340:CDS 35.0%
GACGAGATTCAAAAGTCAAT+TGG - chr1_3:50359269-50359288 None:intergenic 35.0%
!! ATTGACTTTTGAATCTCGTC+CGG + chr1_3:50359269-50359288 Msa0123340:CDS 35.0%
CTGACAAACTCAAACTATGA+TGG - chr1_3:50359494-50359513 None:intergenic 35.0%
! CATCATAGTTTGAGTTTGTC+AGG + chr1_3:50359492-50359511 Msa0123340:CDS 35.0%
TTAACTCCTTAATACGGTCT+TGG - chr1_3:50359674-50359693 None:intergenic 35.0%
! TTTTCTAATCCTGTCTCAGT+AGG + chr1_3:50359741-50359760 Msa0123340:intron 35.0%
!!! AGGCTTTGGTTTTTTGATAG+CGG + chr1_3:50359761-50359780 Msa0123340:intron 35.0%
ACTTGTAGTTCCAATTCTTG+TGG + chr1_3:50359787-50359806 Msa0123340:intron 35.0%
AGACAAAGGTAACGTCTTAT+TGG + chr1_3:50359938-50359957 Msa0123340:intron 35.0%
! TTTAAGCTTTGTGAATAGCC+AGG + chr1_3:50360134-50360153 Msa0123340:intron 35.0%
TTAGTTATCACTGAAGCCAA+TGG + chr1_3:50360171-50360190 Msa0123340:intron 35.0%
!! CTGTTGTTGTTGATAATCAG+AGG - chr1_3:50360643-50360662 None:intergenic 35.0%
CTCTGATTATCAACAACAAC+AGG + chr1_3:50360641-50360660 Msa0123340:CDS 35.0%
! GATTCATGATAATGAGCGTA+AGG - chr1_3:50360830-50360849 None:intergenic 35.0%
CTTCTGCTATCTCAAGAAAA+TGG - chr1_3:50360882-50360901 None:intergenic 35.0%
CAACAGAAATGTACATAGAC+TGG + chr1_3:50361189-50361208 Msa0123340:CDS 35.0%
TACATAGACTGGACATCTTA+TGG + chr1_3:50361200-50361219 Msa0123340:CDS 35.0%
GACTGCAATAATTGAACAAG+CGG - chr1_3:50361226-50361245 None:intergenic 35.0%
GGTAAACACAACAATATGGT+TGG - chr1_3:50361568-50361587 None:intergenic 35.0%
! AGAATTTGAGGTTCGAAGGT+TGG + chr1_3:50356324-50356343 Msa0123340:five_prime_UTR 40.0%
! GAATTTGAGGTTCGAAGGTT+GGG + chr1_3:50356325-50356344 Msa0123340:five_prime_UTR 40.0%
! GGATAGGTTGTTATTGGCAA+CGG + chr1_3:50356377-50356396 Msa0123340:five_prime_UTR 40.0%
TGGAAGAAGGTGAAGAAGAT+GGG + chr1_3:50356616-50356635 Msa0123340:exon 40.0%
! GCCTTTGTTTGGATACTGAT+TGG + chr1_3:50356665-50356684 Msa0123340:CDS 40.0%
CAACGTTGTGCTAGAATGTA+TGG + chr1_3:50356712-50356731 Msa0123340:intron 40.0%
!!! CACCTTACAAGTTGGTTTTG+TGG + chr1_3:50357135-50357154 Msa0123340:intron 40.0%
!!! CCTTACAAGTTGGTTTTGTG+GGG + chr1_3:50357137-50357156 Msa0123340:intron 40.0%
!!! GGCCAACCCAAATTTTTAGT+TGG + chr1_3:50357168-50357187 Msa0123340:intron 40.0%
TGGCCCAACAGATATTGAAT+AGG - chr1_3:50357202-50357221 None:intergenic 40.0%
!! GTTCTGAGAGCACATACTTT+GGG - chr1_3:50357444-50357463 None:intergenic 40.0%
!! TGTTCTGAGAGCACATACTT+TGG - chr1_3:50357445-50357464 None:intergenic 40.0%
! GATTTTTCACATGACCCTCT+AGG + chr1_3:50357488-50357507 Msa0123340:CDS 40.0%
TCGCAACAGATAATCCTAGA+GGG - chr1_3:50357505-50357524 None:intergenic 40.0%
TTCGCAACAGATAATCCTAG+AGG - chr1_3:50357506-50357525 None:intergenic 40.0%
CATGTATATTCGTTAGGGGA+AGG + chr1_3:50357536-50357555 Msa0123340:CDS 40.0%
!! TCCTGTTTCTACAGTATGGT+TGG + chr1_3:50357639-50357658 Msa0123340:intron 40.0%
TCCAACCATACTGTAGAAAC+AGG - chr1_3:50357643-50357662 None:intergenic 40.0%
TTTCTACAGTATGGTTGGAC+AGG + chr1_3:50357644-50357663 Msa0123340:intron 40.0%
CTGTTACTGGAAAACATCAG+TGG + chr1_3:50357670-50357689 Msa0123340:CDS 40.0%
!!! CTAGTCCATCTTTTAAGGTG+AGG + chr1_3:50357721-50357740 Msa0123340:intron 40.0%
AGGATCCTCACCTTAAAAGA+TGG - chr1_3:50357729-50357748 None:intergenic 40.0%
TGTGAATGTTGTTGCCAATG+CGG + chr1_3:50357992-50358011 Msa0123340:intron 40.0%
! GATTCTCTTTTGAACCGCAT+TGG - chr1_3:50358009-50358028 None:intergenic 40.0%
! ATGTAAGGCTTGGTAAGTCA+GGG - chr1_3:50358397-50358416 None:intergenic 40.0%
CATTTGCCTGTCAACATGTA+AGG - chr1_3:50358412-50358431 None:intergenic 40.0%
GCATTCACAGATGACAGAAA+AGG - chr1_3:50358576-50358595 None:intergenic 40.0%
TTTCTGTCATCTGTGAATGC+AGG + chr1_3:50358576-50358595 Msa0123340:intron 40.0%
! TTCACGCTTTGGATTTGACT+AGG - chr1_3:50358679-50358698 None:intergenic 40.0%
AACACACAGAAAACCATGAC+GGG + chr1_3:50358703-50358722 Msa0123340:CDS 40.0%
! AATAGCTTTTCCCAGGACAT+TGG - chr1_3:50358756-50358775 None:intergenic 40.0%
CTTGAAATTGACAGCGATCA+AGG + chr1_3:50358829-50358848 Msa0123340:CDS 40.0%
! TGACATCGATTGAAGCAAGA+TGG - chr1_3:50358857-50358876 None:intergenic 40.0%
GCAGAGAATACGAAACAAGT+AGG + chr1_3:50358889-50358908 Msa0123340:CDS 40.0%
GGTATCCTCGTAAAAAGACT+CGG - chr1_3:50359100-50359119 None:intergenic 40.0%
TCATGTAACTCATAACCAGC+AGG - chr1_3:50359141-50359160 None:intergenic 40.0%
ACTGCTTCCAAAAGATGTTC+CGG - chr1_3:50359291-50359310 None:intergenic 40.0%
ATCATTTCCTACATCAGTGC+AGG + chr1_3:50359359-50359378 Msa0123340:CDS 40.0%
AAAACAGCAAAAAGAGGGCT+AGG + chr1_3:50359604-50359623 Msa0123340:CDS 40.0%
ACTGATCCAAGACCGTATTA+AGG + chr1_3:50359665-50359684 Msa0123340:CDS 40.0%
! TTAAGAGAACTGGTGCCAAA+CGG + chr1_3:50359690-50359709 Msa0123340:CDS 40.0%
AAACCTTCAGCCACAAGAAT+TGG - chr1_3:50359800-50359819 None:intergenic 40.0%
!! GTGCAGTATTGATTCACTGT+TGG + chr1_3:50359837-50359856 Msa0123340:intron 40.0%
!! ACGTCTTATTGGCTTTGAGA+TGG + chr1_3:50359949-50359968 Msa0123340:intron 40.0%
! GAGTGGAATTAGGCTTTGAT+CGG + chr1_3:50360093-50360112 Msa0123340:intron 40.0%
CTAATGTTCATCAAGGAACC+TGG - chr1_3:50360155-50360174 None:intergenic 40.0%
AATGAAATTCCAGCTACCCT+GGG - chr1_3:50360222-50360241 None:intergenic 40.0%
AAATGAAATTCCAGCTACCC+TGG - chr1_3:50360223-50360242 None:intergenic 40.0%
AGGGTAGCTGGAATTTCATT+TGG + chr1_3:50360222-50360241 Msa0123340:intron 40.0%
AACAACAACAGGGTTCAAGT+TGG + chr1_3:50360652-50360671 Msa0123340:CDS 40.0%
! ACAACAACAGGGTTCAAGTT+GGG + chr1_3:50360653-50360672 Msa0123340:CDS 40.0%
! TTGGGACTGACGATTTTGAA+CGG + chr1_3:50360913-50360932 Msa0123340:CDS 40.0%
! GAAGACATGCATGTGTTTTG+TGG + chr1_3:50360957-50360976 Msa0123340:CDS 40.0%
! ATGCATGTGTTTTGTGGTTG+AGG + chr1_3:50360963-50360982 Msa0123340:CDS 40.0%
! ATGTGTTTTGTGGTTGAGGT+AGG + chr1_3:50360967-50360986 Msa0123340:intron 40.0%
ATCGATGAATTGTCTGTCAC+AGG + chr1_3:50361159-50361178 Msa0123340:intron 40.0%
TCGATGAATTGTCTGTCACA+GGG + chr1_3:50361160-50361179 Msa0123340:intron 40.0%
! TTGGGAGAAGGAAACTTGTT+GGG + chr1_3:50361385-50361404 Msa0123340:three_prime_UTR 40.0%
! AAGTGAGTGAGAGGTGTGAT+GGG + chr1_3:50356351-50356370 Msa0123340:five_prime_UTR 45.0%
GGGTAGGGATAGGTTGTTAT+TGG + chr1_3:50356371-50356390 Msa0123340:five_prime_UTR 45.0%
! AGGTTGTTATTGGCAACGGT+CGG + chr1_3:50356381-50356400 Msa0123340:five_prime_UTR 45.0%
!!! GGTTTCTTTTTTTGAGGGGG+TGG + chr1_3:50356506-50356525 Msa0123340:five_prime_UTR 45.0%
!!! TTCTTTTTTTGAGGGGGTGG+TGG + chr1_3:50356509-50356528 Msa0123340:five_prime_UTR 45.0%
GTGGAAGAAGGTGAAGAAGA+TGG + chr1_3:50356615-50356634 Msa0123340:exon 45.0%
CCCCACAAAACCAACTTGTA+AGG - chr1_3:50357140-50357159 None:intergenic 45.0%
!!! TGGTTTTGTGGGGTTGAGTT+AGG + chr1_3:50357147-50357166 Msa0123340:intron 45.0%
GTCAAGACTTGACATCTGGA+GGG - chr1_3:50357249-50357268 None:intergenic 45.0%
TGTCAAGACTTGACATCTGG+AGG - chr1_3:50357250-50357269 None:intergenic 45.0%
TTGCTTGCAGGATCTTGACA+TGG + chr1_3:50357378-50357397 Msa0123340:intron 45.0%
TGCTTGCAGGATCTTGACAT+GGG + chr1_3:50357379-50357398 Msa0123340:intron 45.0%
TATGTGCTCTCAGAACACCT+TGG + chr1_3:50357448-50357467 Msa0123340:CDS 45.0%
ACCTTGGAGCAGATCTATGT+TGG + chr1_3:50357464-50357483 Msa0123340:CDS 45.0%
TCCAACATAGATCTGCTCCA+AGG - chr1_3:50357468-50357487 None:intergenic 45.0%
! CCAAGTTGAACAACTCCAAG+TGG - chr1_3:50357903-50357922 None:intergenic 45.0%
CCACTTGGAGTTGTTCAACT+TGG + chr1_3:50357900-50357919 Msa0123340:CDS 45.0%
!! CTTGGTGGTGATTGAAGCAT+TGG + chr1_3:50358159-50358178 Msa0123340:intron 45.0%
! CATGTAAGGCTTGGTAAGTC+AGG - chr1_3:50358398-50358417 None:intergenic 45.0%
ACCAAGCCTTACATGTTGAC+AGG + chr1_3:50358403-50358422 Msa0123340:intron 45.0%
TGTCATCTGTGAATGCAGGT+TGG + chr1_3:50358580-50358599 Msa0123340:intron 45.0%
!! AATGCAGGTTGGTGAAGACA+TGG + chr1_3:50358591-50358610 Msa0123340:intron 45.0%
!! ATGCAGGTTGGTGAAGACAT+GGG + chr1_3:50358592-50358611 Msa0123340:intron 45.0%
! CGCTTTGGATTTGACTAGGA+AGG - chr1_3:50358675-50358694 None:intergenic 45.0%
GTGTGTTACGTTTCACGCTT+TGG - chr1_3:50358690-50358709 None:intergenic 45.0%
ATCAAGTGTTTCACCCGTCA+TGG - chr1_3:50358719-50358738 None:intergenic 45.0%
GACGGGTGAAACACTTGATA+TGG + chr1_3:50358720-50358739 Msa0123340:CDS 45.0%
! CTTTTCCCAGGACATTGGAA+GGG - chr1_3:50358751-50358770 None:intergenic 45.0%
! GGAGATGAATAGCTTTTCCC+AGG - chr1_3:50358763-50358782 None:intergenic 45.0%
TATTGATGTGGCCAAACACG+AGG + chr1_3:50358804-50358823 Msa0123340:CDS 45.0%
ATTGATGTGGCCAAACACGA+GGG + chr1_3:50358805-50358824 Msa0123340:CDS 45.0%
AATTTCAAGCCCCTCGTGTT+TGG - chr1_3:50358818-50358837 None:intergenic 45.0%
! TCAGACCGAGTCTTTTTACG+AGG + chr1_3:50359092-50359111 Msa0123340:CDS 45.0%
! TTACATGAAGCACTTGGACC+AGG + chr1_3:50359153-50359172 Msa0123340:CDS 45.0%
! ATCTCGTCCGGAACATCTTT+TGG + chr1_3:50359281-50359300 Msa0123340:CDS 45.0%
!! GGAACATCTTTTGGAAGCAG+TGG + chr1_3:50359290-50359309 Msa0123340:CDS 45.0%
! ATTGTGTCCTGCACTGATGT+AGG - chr1_3:50359369-50359388 None:intergenic 45.0%
TACATCAGTGCAGGACACAA+TGG + chr1_3:50359368-50359387 Msa0123340:CDS 45.0%
TTGAGTTTGTCAGGGATCTG+CGG + chr1_3:50359501-50359520 Msa0123340:CDS 45.0%
AACTGGTTACTACACGAGCT+AGG - chr1_3:50359561-50359580 None:intergenic 45.0%
CGTGTAGTAACCAGTTTGAG+AGG + chr1_3:50359565-50359584 Msa0123340:CDS 45.0%
GTTCAGAAGACCTCTCAAAC+TGG - chr1_3:50359578-50359597 None:intergenic 45.0%
AAAGTTGTAGGCCTAGACCA+AGG + chr1_3:50359634-50359653 Msa0123340:CDS 45.0%
AAGTTGTAGGCCTAGACCAA+GGG + chr1_3:50359635-50359654 Msa0123340:CDS 45.0%
CAAGATACCTTTGCTCCGTT+TGG - chr1_3:50359708-50359727 None:intergenic 45.0%
AATCCTGTCTCAGTAGGCTT+TGG + chr1_3:50359747-50359766 Msa0123340:intron 45.0%
AAACCAAAGCCTACTGAGAC+AGG - chr1_3:50359753-50359772 None:intergenic 45.0%
GTTCCAATTCTTGTGGCTGA+AGG + chr1_3:50359794-50359813 Msa0123340:intron 45.0%
CAGCATGCTTAGTTACGCTT+TGG - chr1_3:50359891-50359910 None:intergenic 45.0%
! CATAGGTGTGAGGTATCCAT+TGG - chr1_3:50360190-50360209 None:intergenic 45.0%
GTTACAATGGCATAGGTGTG+AGG - chr1_3:50360200-50360219 None:intergenic 45.0%
ACCTATGCCATTGTAACCCA+GGG + chr1_3:50360203-50360222 Msa0123340:intron 45.0%
AACTGCGCAGTTGCATCATA+TGG + chr1_3:50360599-50360618 Msa0123340:intron 45.0%
TCATGAATGTGTGGTGCTCT+TGG - chr1_3:50361248-50361267 None:intergenic 45.0%
TTCTTTGCTTGGGGAAAGCA+GGG - chr1_3:50361362-50361381 None:intergenic 45.0%
TTCCCCAAGCAAAGAAGTCT+TGG + chr1_3:50361366-50361385 Msa0123340:three_prime_UTR 45.0%
TCCCCAAGCAAAGAAGTCTT+GGG + chr1_3:50361367-50361386 Msa0123340:three_prime_UTR 45.0%
TCCCAAGACTTCTTTGCTTG+GGG - chr1_3:50361371-50361390 None:intergenic 45.0%
CTCCCAAGACTTCTTTGCTT+GGG - chr1_3:50361372-50361391 None:intergenic 45.0%
TCTCCCAAGACTTCTTTGCT+TGG - chr1_3:50361373-50361392 None:intergenic 45.0%
AGCAAAGAAGTCTTGGGAGA+AGG + chr1_3:50361373-50361392 Msa0123340:three_prime_UTR 45.0%
CTTGGGAGAAGGAAACTTGT+TGG + chr1_3:50361384-50361403 Msa0123340:three_prime_UTR 45.0%
! TTTGAGGTTCGAAGGTTGGG+AGG + chr1_3:50356328-50356347 Msa0123340:five_prime_UTR 50.0%
! GAAGTGAGTGAGAGGTGTGA+TGG + chr1_3:50356350-50356369 Msa0123340:five_prime_UTR 50.0%
!! AGTGAGAGGTGTGATGGGTA+GGG + chr1_3:50356356-50356375 Msa0123340:five_prime_UTR 50.0%
!! AACCCTGCTCGCCGTTTTAA+TGG - chr1_3:50356411-50356430 None:intergenic 50.0%
AGGAGGAAACAAGCTGGAAG+AGG + chr1_3:50356432-50356451 Msa0123340:five_prime_UTR 50.0%
GGAGGAAACAAGCTGGAAGA+GGG + chr1_3:50356433-50356452 Msa0123340:five_prime_UTR 50.0%
! GCTGGAAGAGGGTCTTATAG+AGG + chr1_3:50356444-50356463 Msa0123340:five_prime_UTR 50.0%
!!! TTTTTTTGAGGGGGTGGTGG+TGG + chr1_3:50356512-50356531 Msa0123340:five_prime_UTR 50.0%
!!! TTTTTTGAGGGGGTGGTGGT+GGG + chr1_3:50356513-50356532 Msa0123340:five_prime_UTR 50.0%
AGACTAGGGACTAGGGACTA+GGG + chr1_3:50356540-50356559 Msa0123340:five_prime_UTR 50.0%
GGGTGTCTCACCTTACAAGT+TGG + chr1_3:50357127-50357146 Msa0123340:intron 50.0%
CACCTGCTATCAGATCACCT+GGG + chr1_3:50357220-50357239 Msa0123340:intron 50.0%
TTGGTGTGGCAATTGCTTGC+AGG + chr1_3:50357366-50357385 Msa0123340:intron 50.0%
TTGCAGGATCTTGACATGGG+AGG + chr1_3:50357382-50357401 Msa0123340:intron 50.0%
GTTGGACAGGTAGCTGTTAC+TGG + chr1_3:50357657-50357676 Msa0123340:CDS 50.0%
GTCGTAGCAGTACTACCACT+TGG + chr1_3:50357885-50357904 Msa0123340:CDS 50.0%
GCCTGTCAACATGTAAGGCT+TGG - chr1_3:50358407-50358426 None:intergenic 50.0%
!! TGCAGGTTGGTGAAGACATG+GGG + chr1_3:50358593-50358612 Msa0123340:intron 50.0%
TAACGCCCTTCCAATGTCCT+GGG + chr1_3:50358743-50358762 Msa0123340:CDS 50.0%
! GCTTTTCCCAGGACATTGGA+AGG - chr1_3:50358752-50358771 None:intergenic 50.0%
TTGATGTGGCCAAACACGAG+GGG + chr1_3:50358806-50358825 Msa0123340:CDS 50.0%
CTAGGCCAGGTGAAAGTTGT+AGG + chr1_3:50359622-50359641 Msa0123340:CDS 50.0%
CTAGGCCTACAACTTTCACC+TGG - chr1_3:50359630-50359649 None:intergenic 50.0%
AGTTGTCTGTCCCTTGGTCT+AGG - chr1_3:50359648-50359667 None:intergenic 50.0%
TGGATCAGTTGTCTGTCCCT+TGG - chr1_3:50359654-50359673 None:intergenic 50.0%
CACCTATGCCATTGTAACCC+AGG + chr1_3:50360202-50360221 Msa0123340:intron 50.0%
ACCCTGGGTTACAATGGCAT+AGG - chr1_3:50360207-50360226 None:intergenic 50.0%
TGATGCAACTGCGCAGTTGT+AGG - chr1_3:50360597-50360616 None:intergenic 50.0%
!! ACAGGGTTCAAGTTGGGCAA+TGG + chr1_3:50360659-50360678 Msa0123340:CDS 50.0%
!! TCAAGTTGGGCAATGGAGGT+AGG + chr1_3:50360666-50360685 Msa0123340:CDS 50.0%
! GAATGGGCAGATGCTTGTTG+AGG + chr1_3:50360734-50360753 Msa0123340:CDS 50.0%
CATGCTACAGATGCTCTGTG+AGG + chr1_3:50360849-50360868 Msa0123340:intron 50.0%
CTTCTTTGCTTGGGGAAAGC+AGG - chr1_3:50361363-50361382 None:intergenic 50.0%
GTTGGGAGGAAGTGAGTGAG+AGG + chr1_3:50356342-50356361 Msa0123340:five_prime_UTR 55.0%
!! GAGTGAGAGGTGTGATGGGT+AGG + chr1_3:50356355-50356374 Msa0123340:five_prime_UTR 55.0%
!! GAGGTGTGATGGGTAGGGAT+AGG + chr1_3:50356361-50356380 Msa0123340:five_prime_UTR 55.0%
CGGTCGGACCGCCATTAAAA+CGG + chr1_3:50356397-50356416 Msa0123340:five_prime_UTR 55.0%
!! CCTGCTCGCCGTTTTAATGG+CGG - chr1_3:50356408-50356427 None:intergenic 55.0%
CGCCATTAAAACGGCGAGCA+GGG + chr1_3:50356406-50356425 Msa0123340:five_prime_UTR 55.0%
TAAAACGGCGAGCAGGGTTG+AGG + chr1_3:50356412-50356431 Msa0123340:five_prime_UTR 55.0%
GGGTTGAGGAGGAAACAAGC+TGG + chr1_3:50356426-50356445 Msa0123340:five_prime_UTR 55.0%
!! TGGTGGTGGGAGAGAGACTA+GGG + chr1_3:50356526-50356545 Msa0123340:five_prime_UTR 55.0%
TGGGAGAGAGACTAGGGACT+AGG + chr1_3:50356532-50356551 Msa0123340:five_prime_UTR 55.0%
GGGAGAGAGACTAGGGACTA+GGG + chr1_3:50356533-50356552 Msa0123340:five_prime_UTR 55.0%
GAGACTAGGGACTAGGGACT+AGG + chr1_3:50356539-50356558 Msa0123340:five_prime_UTR 55.0%
CCAGGTGATCTGATAGCAGG+TGG - chr1_3:50357222-50357241 None:intergenic 55.0%
CCACCTGCTATCAGATCACC+TGG + chr1_3:50357219-50357238 Msa0123340:intron 55.0%
GACCCAGGTGATCTGATAGC+AGG - chr1_3:50357225-50357244 None:intergenic 55.0%
GTAACGCCCTTCCAATGTCC+TGG + chr1_3:50358742-50358761 Msa0123340:CDS 55.0%
AGCAAAAAGAGGGCTAGGCC+AGG + chr1_3:50359609-50359628 Msa0123340:CDS 55.0%
! ACTGGTGCCAAACGGAGCAA+AGG + chr1_3:50359698-50359717 Msa0123340:CDS 55.0%
CCAGCTACCCTGGGTTACAA+TGG - chr1_3:50360213-50360232 None:intergenic 55.0%
CCATTGTAACCCAGGGTAGC+TGG + chr1_3:50360210-50360229 Msa0123340:intron 55.0%
!! GGGTTCAAGTTGGGCAATGG+AGG + chr1_3:50360662-50360681 Msa0123340:CDS 55.0%
AGTTGGGCAATGGAGGTAGG+AGG + chr1_3:50360669-50360688 Msa0123340:CDS 55.0%
AACGGTGCAAGTGAAGCTCG+TGG + chr1_3:50360931-50360950 Msa0123340:CDS 55.0%
TTGGGGAAAGCAGGGAGGAA+GGG - chr1_3:50361354-50361373 None:intergenic 55.0%
TTTGCTTGGGGAAAGCAGGG+AGG - chr1_3:50361359-50361378 None:intergenic 55.0%
CCGCCATTAAAACGGCGAGC+AGG + chr1_3:50356405-50356424 Msa0123340:five_prime_UTR 60.0%
!! GTGGTGGTGGGAGAGAGACT+AGG + chr1_3:50356525-50356544 Msa0123340:five_prime_UTR 60.0%
TGACATCTGGAGGGTGACCC+AGG - chr1_3:50357240-50357259 None:intergenic 60.0%
CTTGGGGAAAGCAGGGAGGA+AGG - chr1_3:50361355-50361374 None:intergenic 60.0%
AACGGCGAGCAGGGTTGAGG+AGG + chr1_3:50356415-50356434 Msa0123340:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 50355903 50361680 50355903 ID=Msa0123340;Name=Msa0123340
chr1_3 mRNA 50355903 50361680 50355903 ID=Msa0123340-mRNA-1;Parent=Msa0123340;Name=Msa0123340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=731|1|1|1|0.87|1|9|413|666
chr1_3 exon 50355903 50356728 50355903 ID=Msa0123340-mRNA-1:exon:15360;Parent=Msa0123340-mRNA-1
chr1_3 exon 50357388 50357558 50357388 ID=Msa0123340-mRNA-1:exon:15361;Parent=Msa0123340-mRNA-1
chr1_3 exon 50357653 50357737 50357653 ID=Msa0123340-mRNA-1:exon:15362;Parent=Msa0123340-mRNA-1
chr1_3 exon 50357876 50357935 50357876 ID=Msa0123340-mRNA-1:exon:15363;Parent=Msa0123340-mRNA-1
chr1_3 exon 50358598 50359719 50358598 ID=Msa0123340-mRNA-1:exon:15364;Parent=Msa0123340-mRNA-1
chr1_3 exon 50359838 50359945 50359838 ID=Msa0123340-mRNA-1:exon:15365;Parent=Msa0123340-mRNA-1
chr1_3 exon 50360609 50360755 50360609 ID=Msa0123340-mRNA-1:exon:15366;Parent=Msa0123340-mRNA-1
chr1_3 exon 50360859 50360984 50360859 ID=Msa0123340-mRNA-1:exon:15367;Parent=Msa0123340-mRNA-1
chr1_3 exon 50361181 50361680 50361181 ID=Msa0123340-mRNA-1:exon:15368;Parent=Msa0123340-mRNA-1
chr1_3 five_prime_UTR 50355903 50356633 50355903 ID=Msa0123340-mRNA-1:five_prime_utr;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50356634 50356728 50356634 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50357388 50357558 50357388 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50357653 50357737 50357653 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50357876 50357935 50357876 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50358598 50359719 50358598 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50359838 50359945 50359838 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50360609 50360755 50360609 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50360859 50360984 50360859 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 CDS 50361181 50361267 50361181 ID=Msa0123340-mRNA-1:cds;Parent=Msa0123340-mRNA-1
chr1_3 three_prime_UTR 50361268 50361680 50361268 ID=Msa0123340-mRNA-1:three_prime_utr;Parent=Msa0123340-mRNA-1
Gene Sequence

>Msa0123340

ATGGGTACCAATTTGCATCAACTACTAAGAAGCCTTTGTTTGGATACTGATTGGAAGTATGCTATCTTTTGGAAGCTACAACGTTGTGCTAGAATGATCTTGACATGGGAGGATGCTTACTATGACAACCCTGATAATTGTGATTCTTCCCAAAGTATGTGCTCTCAGAACACCTTGGAGCAGATCTATGTTGGAGATTTTTCACATGACCCTCTAGGATTATCTGTTGCGAAGATGCCGTATCATGTATATTCGTTAGGGGAAGGTATGGTTGGACAGGTAGCTGTTACTGGAAAACATCAGTGGATCTGTGCAGATAATCAAGTTACAATTTCTAGTCCATCTTTTAAGACAATTGTTGTCGTAGCAGTACTACCACTTGGAGTTGTTCAACTTGGCTCCTTAAATAAAGTTGGTGAAGACATGGGGTTTGTAACTCACATAAGAAGTCTCTTTTTGTCTATTCGTGATCACACATTAGGTTGCCTTCCTAGTCAAATCCAAAGCGTGAAACGTAACACACAGAAAACCATGACGGGTGAAACACTTGATATGGTAACGCCCTTCCAATGTCCTGGGAAAAGCTATTCATCTCCTACTGTTTATCAGAAAATGACTATTGATGTGGCCAAACACGAGGGGCTTGAAATTGACAGCGATCAAGGTTCCATCTTGCTTCAATCGATGTCAAATATGATGACTGCAGAGAATACGAAACAAGTAGGGATGAAACCTTCAAATGAAAGGATGTGTGAAGGGAACAATAATGGCTGCAAAGATACTAGTTTGAAACCAGACAAAAATGTCTCATCGTTTTTACACAATTCAGTTATGGATTATAATAGTACCAAAGATTTAACAAGTCCATCAGAAAATGTAGAAGCTGATACTGAGATGTCAAAGTTTCAGACCGAGTCTTTTTACGAGGATACCTCATACACATTGAAATTTCCTGCTGGTTATGAGTTACATGAAGCACTTGGACCAGGTTTTCTCAAAGAGAGTAAATATTTTGATTGGACGGTACAAGGAAATCAAGATAGTAAAGCTTCTGAGATGTCAGATGAGATTAGCTGCAGCCAATTGACTTTTGAATCTCGTCCGGAACATCTTTTGGAAGCAGTGGTGACCAAAGTTTGCCATAGTAATAATGATATTGTAGATAATGAGGTATCATTTCCTACATCAGTGCAGGACACAATGGTCTCTAGAAGAAAACCTGAAGTTTCTGTTCATAATGACCGAAATATTAATTCAGAAGGCTATTCAATTGATCAACCATCTCATATTAAAGAGGATATGCACCATCATAGTTTGAGTTTGTCAGGGATCTGCGGTGTGATATCCCCCAAAAGTTTTTCTTCTACATGTCCTAGCTCGTGTAGTAACCAGTTTGAGAGGTCTTCTGAACCATCTAAAAACAGCAAAAAGAGGGCTAGGCCAGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTGATCCAAGACCGTATTAAGGAGTTAAGAGAACTGGTGCCAAACGGAGCAAAGTGCAGTATTGATTCACTGTTGGAGTGCACAATAAAGCACATGCTCTTTCTCCAAAGCGTAACTAAGCATGCTGACAAGATAAATAAATTTTCTAAAACAAAGACAAAGTTGCATCATATGGAAAATGACATTCATGGATCCTCTGATTATCAACAACAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAAATTCATTCAGTATTAGTAGAAAATCTTAGTAAGAATGGGCAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCGTAAGAAGCTTGGGACTGACGATTTTGAACGGTGCAAGTGAAGCTCGTGGTGAGAAGACATGCATGTGTTTTGTGGTTGAGGGCCAAAACAACAGAAATGTACATAGACTGGACATCTTATGGCCGCTTGTTCAATTATTGCAGTCCAAGAGCACCACACATTCATGA
Protein sequence

>Msa0123340

MGTNLHQLLRSLCLDTDWKYAIFWKLQRCARMILTWEDAYYDNPDNCDSSQSMCSQNTLEQIYVGDFSHDPLGLSVAKMPYHVYSLGEGMVGQVAVTGKHQWICADNQVTISSPSFKTIVVVAVLPLGVVQLGSLNKVGEDMGFVTHIRSLFLSIRDHTLGCLPSQIQSVKRNTQKTMTGETLDMVTPFQCPGKSYSSPTVYQKMTIDVAKHEGLEIDSDQGSILLQSMSNMMTAENTKQVGMKPSNERMCEGNNNGCKDTSLKPDKNVSSFLHNSVMDYNSTKDLTSPSENVEADTEMSKFQTESFYEDTSYTLKFPAGYELHEALGPGFLKESKYFDWTVQGNQDSKASEMSDEISCSQLTFESRPEHLLEAVVTKVCHSNNDIVDNEVSFPTSVQDTMVSRRKPEVSVHNDRNINSEGYSIDQPSHIKEDMHHHSLSLSGICGVISPKSFSSTCPSSCSNQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSVTKHADKINKFSKTKTKLHHMENDIHGSSDYQQQQGSSWAMEVGGHLKIHSVLVENLSKNGQMLVEMLCEECSHFLEIAEAVRSLGLTILNGASEARGEKTCMCFVVEGQNNRNVHRLDILWPLVQLLQSKSTTHS*