AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383800 MtrunA17_Chr3g0140441 82.310 277 4 1 1 277 1 232 9.21e-166 458
Msa0383800 MtrunA17_Chr8g0360221 38.434 281 148 5 1 277 1 260 3.46e-65 208
Msa0383800 MtrunA17_Chr8g0340501 36.194 268 144 4 8 275 7 247 1.36e-46 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383800 AT1G15215.2 43.561 264 131 3 12 275 11 256 1.40e-65 206
Msa0383800 AT3G18380.1 40.214 281 157 6 1 277 1 274 4.65e-62 199
Msa0383800 AT1G15215.4 43.307 254 126 3 12 265 11 246 1.87e-60 192
Msa0383800 AT1G15215.3 43.023 258 129 3 12 269 11 250 2.29e-60 192
Msa0383800 AT3G18380.2 40.071 282 157 7 1 277 1 275 3.10e-60 195
Msa0383800 AT3G18380.3 39.007 282 157 5 1 277 1 272 1.65e-59 193
Msa0383800 AT1G15215.1 35.260 173 91 4 12 184 11 162 6.47e-18 79.3

Find 78 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTATCCTAACAACGTTTA+AGG 0.151989 3_1:+86822961 None:intergenic
TTCATTTCAGATTGAGAAAA+TGG 0.159542 3_1:-86823384 Msa0383800:intron
ATTAGAAGGGGTGGGTCTTT+TGG 0.206088 3_1:-86820858 Msa0383800:three_prime_UTR
CCCACTTCCACTTCCACTTC+GGG 0.217062 3_1:+86823630 None:intergenic
GAACATAGTCTCCAACTTTC+AGG 0.226239 3_1:+86821422 None:intergenic
GACTCCCGACCTAATTAAAA+AGG 0.229909 3_1:+86820894 None:intergenic
GAAAACAGACTTGAAACTTT+TGG 0.264857 3_1:+86823298 None:intergenic
ACATTACCTTAAACGTTGTT+AGG 0.278622 3_1:-86822967 Msa0383800:CDS
ATGTTAAACTGCATTGATTA+TGG 0.297226 3_1:-86822789 Msa0383800:intron
CGAAAGGAACTGAGCGTTCC+CGG 0.320535 3_1:+86821464 None:intergenic
AGAGTCAGATTTGTTGGGTT+TGG 0.339869 3_1:-86821526 Msa0383800:CDS
AGTTTGCAGTTACCTGGATA+TGG 0.343452 3_1:-86821000 Msa0383800:three_prime_UTR
TGGAAGTGGGAAGTGGGAAG+TGG 0.368233 3_1:-86823617 Msa0383800:five_prime_UTR
AGCTTATCATCTGGTCGTGC+TGG 0.372792 3_1:-86823203 Msa0383800:CDS
CAATGTGCGTAGAAATTAGA+AGG 0.376445 3_1:-86820872 Msa0383800:three_prime_UTR
AGACTATGTTCTGTGCTTCC+AGG 0.376950 3_1:-86821410 Msa0383800:intron
AAAAGTACCTCAAAATGAAT+TGG 0.377374 3_1:-86823023 Msa0383800:CDS
GGATATCATGCATTCTCCTT+TGG 0.380382 3_1:+86821258 None:intergenic
TTAAACGTTGTTAGGATAGT+TGG 0.398334 3_1:-86822959 Msa0383800:CDS
GAAGTCAGAGTCAGATTTGT+TGG 0.404906 3_1:-86821532 Msa0383800:CDS
AAATGTGACACCTGCAACCT+CGG 0.422569 3_1:+86821237 None:intergenic
TCCCACTTCCACTTCCACTT+CGG 0.427083 3_1:+86823629 None:intergenic
TATTTCTTTGACGTTCCAGC+TGG 0.431113 3_1:-86821040 Msa0383800:three_prime_UTR
CTGGGAAACCTGTCATCAAA+TGG 0.437508 3_1:-86823184 Msa0383800:CDS
GTCATGTATATCTAAGATCT+TGG 0.438432 3_1:+86821065 None:intergenic
GTAGGAAGGTACCTCAGAAT+TGG 0.440658 3_1:+86823470 None:intergenic
GGAAGTGGGAAGTGGGAAGT+GGG 0.441933 3_1:-86823616 Msa0383800:five_prime_UTR
GTTTGATTCTTGCCATATCC+AGG 0.442663 3_1:+86820988 None:intergenic
TCCAACAGTTTGCAGTTACC+TGG 0.454630 3_1:-86821006 Msa0383800:three_prime_UTR
ACCTGAGTCCATTTGATGAC+AGG 0.456466 3_1:+86823176 None:intergenic
CCCCGAAGTGGAAGTGGAAG+TGG 0.463397 3_1:-86823631 Msa0383800:five_prime_UTR
TTCCAACTCTGATGAGTCTC+GGG 0.471097 3_1:+86822541 None:intergenic
AAGTCAGAGTCAGATTTGTT+GGG 0.473120 3_1:-86821531 Msa0383800:CDS
GTGGGAAGTGGGAAGTGGGA+AGG 0.474365 3_1:-86823612 Msa0383800:five_prime_UTR
GAGAAGCCCCGAAGTGGAAG+TGG 0.476668 3_1:-86823637 None:intergenic
TGGAAGTGGAAGTGGGAAGT+GGG 0.482433 3_1:-86823623 Msa0383800:five_prime_UTR
TTGTCTTGTAGCTTATCATC+TGG 0.483456 3_1:-86823212 Msa0383800:intron
GTGGAAGTGGAAGTGGGAAG+TGG 0.487129 3_1:-86823624 Msa0383800:five_prime_UTR
TGGGAAGTGGGAAGTGGGAA+GGG 0.493738 3_1:-86823611 Msa0383800:five_prime_UTR
GCACACAGATTTCTTAGCAC+AGG 0.502053 3_1:-86821650 Msa0383800:CDS
CACACAGATTTCTTAGCACA+GGG 0.505636 3_1:-86821649 Msa0383800:CDS
TCCAGGTAACTGCAAACTGT+TGG 0.508034 3_1:+86821005 None:intergenic
TTGCTAAGGGAATCATCAAA+AGG 0.520977 3_1:-86823356 Msa0383800:CDS
ATTCCAACTCTGATGAGTCT+CGG 0.521550 3_1:+86822540 None:intergenic
TGCGTAGAAATTAGAAGGGG+TGG 0.521583 3_1:-86820867 Msa0383800:three_prime_UTR
CTCAGTTCCTTTCGAGAACA+CGG 0.527058 3_1:-86821455 Msa0383800:CDS
GTCTGACCTTCCTTGCATTG+AGG 0.531906 3_1:+86822995 None:intergenic
ATTTGTTGGGTTTGGAGCTG+AGG 0.536262 3_1:-86821518 Msa0383800:CDS
TGCATGATATCCGAGGTTGC+AGG 0.537901 3_1:-86821247 Msa0383800:CDS
GCATATGTGCTCACCATGCT+TGG 0.545702 3_1:+86822495 None:intergenic
CACCCGAGACTCATCAGAGT+TGG 0.547609 3_1:-86822543 Msa0383800:CDS
GCTTATCATCTGGTCGTGCT+GGG 0.552961 3_1:-86823202 Msa0383800:CDS
TTCTGGATTCACCAATTCTG+AGG 0.559706 3_1:-86823481 Msa0383800:intron
GAGTGTTCCAACCTGAAAGT+TGG 0.564740 3_1:-86821433 Msa0383800:CDS
ATAGTCTCCAACTTTCAGGT+TGG 0.570305 3_1:+86821426 None:intergenic
AACAACGTTTAAGGTAATGT+AGG 0.574909 3_1:+86822970 None:intergenic
CCACTTCCACTTCCACTTCG+GGG 0.577237 3_1:+86823631 None:intergenic
ATTGGTTTCTCCTCAATGCA+AGG 0.583252 3_1:-86823005 Msa0383800:CDS
TCTAGGAAAGAGTTCGCTTG+AGG 0.588698 3_1:-86821103 Msa0383800:intron
GAACACTCCGTGTTCTCGAA+AGG 0.592495 3_1:+86821448 None:intergenic
ACCTGTCATCAAATGGACTC+AGG 0.592515 3_1:-86823177 Msa0383800:intron
TGGAAAGCTACTTACCCAGC+TGG 0.592982 3_1:+86821025 None:intergenic
CTCACATTGTAGAGATCCAA+AGG 0.594628 3_1:-86821274 Msa0383800:CDS
ATTTCTTTGACGTTCCAGCT+GGG 0.595424 3_1:-86821039 Msa0383800:three_prime_UTR
TGGAGCTGAGGAAGATGAGT+GGG 0.595934 3_1:-86821506 Msa0383800:CDS
GATCTTCGAAAGACCAAGCA+TGG 0.600049 3_1:-86822508 Msa0383800:intron
AATAGGGAGAAGCCCCGAAG+TGG 0.617953 3_1:-86823643 None:intergenic
GTTTCTCCTCAATGCAAGGA+AGG 0.620933 3_1:-86823001 Msa0383800:CDS
GCGTAGAAATTAGAAGGGGT+GGG 0.621079 3_1:-86820866 Msa0383800:three_prime_UTR
CCCGAAGTGGAAGTGGAAGT+GGG 0.627081 3_1:-86823630 Msa0383800:five_prime_UTR
AATGTGCGTAGAAATTAGAA+GGG 0.634839 3_1:-86820871 Msa0383800:three_prime_UTR
GAAAAGAGTTGAGTTGACGA+TGG 0.642726 3_1:-86823535 Msa0383800:exon
ATATCTAAGATCTTGGTCTG+TGG 0.670538 3_1:+86821072 None:intergenic
TTGGAGCTGAGGAAGATGAG+TGG 0.671942 3_1:-86821507 Msa0383800:CDS
AGGAGAATGCATGATATCCG+AGG 0.689625 3_1:-86821254 Msa0383800:CDS
ATGTGCGTAGAAATTAGAAG+GGG 0.701989 3_1:-86820870 Msa0383800:three_prime_UTR
ACACAGATTTCTTAGCACAG+GGG 0.750555 3_1:-86821648 Msa0383800:CDS
ATATGATCACGACAACAACG+AGG 0.764532 3_1:-86821207 Msa0383800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTCCTTTATTTTTA+TGG - chr3_1:86821206-86821225 Msa0383800:intron 10.0%
!!! AATTTTTCCTTTATTTTTAT+GGG - chr3_1:86821207-86821226 Msa0383800:intron 10.0%
!! TAAAATTCCCATAAAAATAA+AGG + chr3_1:86821217-86821236 None:intergenic 15.0%
!!! TTTATTTTTATGGGAATTTT+AGG - chr3_1:86821216-86821235 Msa0383800:CDS 15.0%
!! CTAACTAAATAAAAAAGTAA+AGG + chr3_1:86821643-86821662 None:intergenic 15.0%
!! TAAAAAATAACAATTTAGTG+TGG + chr3_1:86821957-86821976 None:intergenic 15.0%
!! ATATATACAACTTAAATGAA+TGG + chr3_1:86822362-86822381 None:intergenic 15.0%
!! TTATGGTTTATAGTTAAAAT+TGG + chr3_1:86822417-86822436 None:intergenic 15.0%
!! ACAAAATTTAATGATTTAGT+TGG + chr3_1:86822498-86822517 None:intergenic 15.0%
!! ATATAATTGTAAAAACTTAC+AGG + chr3_1:86822679-86822698 None:intergenic 15.0%
!!! TTTTCTTTTTGTTATATTCT+AGG - chr3_1:86823179-86823198 Msa0383800:CDS 15.0%
!!! TTTTCTGTTATTATTTTAGT+AGG - chr3_1:86823525-86823544 Msa0383800:exon 15.0%
!!! TTTCTGTTATTATTTTAGTA+GGG - chr3_1:86823526-86823545 Msa0383800:exon 15.0%
!! TGAAATAAGATTAAAGGTAA+CGG + chr3_1:86820899-86820918 None:intergenic 20.0%
!! CTGAAATGAAATAAGATTAA+AGG + chr3_1:86820905-86820924 None:intergenic 20.0%
!!! TAATTAAAAGTGCATTTCAA+AGG + chr3_1:86821188-86821207 None:intergenic 20.0%
!!! TAAATTTTAATGTCACTGAA+AGG - chr3_1:86821883-86821902 Msa0383800:intron 20.0%
!! AAATGTTTAATGCATAATTG+AGG + chr3_1:86822090-86822109 None:intergenic 20.0%
!!! AACTTTTTCACATCTATAAT+AGG - chr3_1:86822142-86822161 Msa0383800:intron 20.0%
!!! ATTTTTTAGCATGTATGATA+CGG + chr3_1:86822235-86822254 None:intergenic 20.0%
!! ATTATAAATCACACATGAAA+TGG + chr3_1:86823150-86823169 None:intergenic 20.0%
!!! CTCAATTTTTAATTATGTGT+TGG + chr3_1:86823626-86823645 None:intergenic 20.0%
! AGTAAAAGAAAAAAGTAGGA+AGG + chr3_1:86820846-86820865 None:intergenic 25.0%
! AGAGAGTAAAAGAAAAAAGT+AGG + chr3_1:86820850-86820869 None:intergenic 25.0%
! TTCATTTCAGATTGAGAAAA+TGG - chr3_1:86820915-86820934 Msa0383800:three_prime_UTR 25.0%
! AGAAAATGGAAAAATTGCTA+AGG - chr3_1:86820929-86820948 Msa0383800:three_prime_UTR 25.0%
! GAAAATGGAAAAATTGCTAA+GGG - chr3_1:86820930-86820949 Msa0383800:three_prime_UTR 25.0%
!!! TAGTTTTTGGTAAAAATCGA+GGG + chr3_1:86820980-86820999 None:intergenic 25.0%
!!! AATTCATTTTGAGGTACTTT+TGG + chr3_1:86821277-86821296 None:intergenic 25.0%
!!! AAAAGTACCTCAAAATGAAT+TGG - chr3_1:86821276-86821295 Msa0383800:CDS 25.0%
! ATGTAATTTACTTCAGAATG+CGG - chr3_1:86821460-86821479 Msa0383800:CDS 25.0%
!!! ATGTTAAACTGCATTGATTA+TGG - chr3_1:86821510-86821529 Msa0383800:CDS 25.0%
! ATGAAGCTATAAACAATCTA+TGG + chr3_1:86822009-86822028 None:intergenic 25.0%
! GTAGTATTCAGTTAATTATC+TGG - chr3_1:86822178-86822197 Msa0383800:intron 25.0%
!!! TTTTTTAGCATGTATGATAC+GGG + chr3_1:86822234-86822253 None:intergenic 25.0%
! ATACATGCTAAAAAATTGTG+AGG - chr3_1:86822239-86822258 Msa0383800:intron 25.0%
!! TCGTCTTTTATAACTATACA+TGG - chr3_1:86822298-86822317 Msa0383800:intron 25.0%
!! CTTTTATAACTATACATGGA+TGG - chr3_1:86822302-86822321 Msa0383800:intron 25.0%
! AAGATTCTTTGACTAAAATC+TGG - chr3_1:86822327-86822346 Msa0383800:intron 25.0%
! GTTGTATATATGTATATGTG+TGG - chr3_1:86822371-86822390 Msa0383800:intron 25.0%
!! CCTATATACTATCTGTTTTA+TGG + chr3_1:86822434-86822453 None:intergenic 25.0%
! CCATAAAACAGATAGTATAT+AGG - chr3_1:86822431-86822450 Msa0383800:intron 25.0%
!!! GTAAGAGTTTTGAAAATCAT+TGG + chr3_1:86822473-86822492 None:intergenic 25.0%
! TCAACATAAAAAATTCAGTC+CGG - chr3_1:86822816-86822835 Msa0383800:CDS 25.0%
!!! CAATTGACATTTTGACTATT+TGG - chr3_1:86823336-86823355 Msa0383800:CDS 25.0%
!!! AATGCTGTTTTTTTTAGCAA+TGG - chr3_1:86823466-86823485 Msa0383800:intron 25.0%
!!! TGTTATTATTTTAGTAGGGA+AGG - chr3_1:86823530-86823549 Msa0383800:exon 25.0%
TTGGTGAATCCAGAAAAAAT+AGG + chr3_1:86820813-86820832 None:intergenic 30.0%
!!! CTAGTTTTTGGTAAAAATCG+AGG + chr3_1:86820981-86821000 None:intergenic 30.0%
!!! TGAAACTTTTGGCTAGTTTT+TGG + chr3_1:86820993-86821012 None:intergenic 30.0%
! GAAAACAGACTTGAAACTTT+TGG + chr3_1:86821004-86821023 None:intergenic 30.0%
! CTCAATCATTGTTTCTTTGT+TGG - chr3_1:86821027-86821046 Msa0383800:three_prime_UTR 30.0%
! ATCATTGTTTCTTTGTTGGT+CGG - chr3_1:86821031-86821050 Msa0383800:three_prime_UTR 30.0%
! AACAACGTTTAAGGTAATGT+AGG + chr3_1:86821332-86821351 None:intergenic 30.0%
ACATTACCTTAAACGTTGTT+AGG - chr3_1:86821332-86821351 Msa0383800:intron 30.0%
AACTATCCTAACAACGTTTA+AGG + chr3_1:86821341-86821360 None:intergenic 30.0%
TTAAACGTTGTTAGGATAGT+TGG - chr3_1:86821340-86821359 Msa0383800:intron 30.0%
TCCTGTGTATTTCAATGTTT+GGG - chr3_1:86821395-86821414 Msa0383800:intron 30.0%
!!! GTTTTAAGAAAATGACACCA+AGG - chr3_1:86821549-86821568 Msa0383800:intron 30.0%
AGTAAAGGAAAACAGAAAGT+GGG + chr3_1:86821628-86821647 None:intergenic 30.0%
AAGTAAAGGAAAACAGAAAG+TGG + chr3_1:86821629-86821648 None:intergenic 30.0%
ATATATGCAGAATTCACGAA+TGG + chr3_1:86821854-86821873 None:intergenic 30.0%
!!! CTTCAATGCCATTTTTACTT+TGG - chr3_1:86821979-86821998 Msa0383800:intron 30.0%
AATCATTGGAGGAAGAAAAT+TGG + chr3_1:86822459-86822478 None:intergenic 30.0%
!!! AGAGTTTTGAAAATCATTGG+AGG + chr3_1:86822470-86822489 None:intergenic 30.0%
TACAATTTGTCCAAGTCTAA+AGG - chr3_1:86822594-86822613 Msa0383800:intron 30.0%
AAATCTAGTACACCCTATAA+GGG + chr3_1:86822715-86822734 None:intergenic 30.0%
AAAATCTAGTACACCCTATA+AGG + chr3_1:86822716-86822735 None:intergenic 30.0%
! AACAGTTTCTCCTTTTGTAA+AGG - chr3_1:86822745-86822764 Msa0383800:intron 30.0%
CAACATAAAAAATTCAGTCC+GGG - chr3_1:86822817-86822836 Msa0383800:CDS 30.0%
! GACAGTTTCAATGTGTTTTT+AGG - chr3_1:86822972-86822991 Msa0383800:CDS 30.0%
!!! TTTCAATGTGTTTTTAGGAG+AGG - chr3_1:86822977-86822996 Msa0383800:CDS 30.0%
! GTCATGTATATCTAAGATCT+TGG + chr3_1:86823237-86823256 None:intergenic 30.0%
AATGTGCGTAGAAATTAGAA+GGG - chr3_1:86823428-86823447 Msa0383800:intron 30.0%
GAAAAAATAGGTCTGTTACG+AGG + chr3_1:86820801-86820820 None:intergenic 35.0%
!!! CGTAACAGACCTATTTTTTC+TGG - chr3_1:86820801-86820820 Msa0383800:three_prime_UTR 35.0%
TTGCTAAGGGAATCATCAAA+AGG - chr3_1:86820943-86820962 Msa0383800:three_prime_UTR 35.0%
TTGTCTTGTAGCTTATCATC+TGG - chr3_1:86821087-86821106 Msa0383800:CDS 35.0%
!! GGGAATTTTAGGTACATAGT+TGG - chr3_1:86821227-86821246 Msa0383800:CDS 35.0%
! GGAGAAACCAATTCATTTTG+AGG + chr3_1:86821286-86821305 None:intergenic 35.0%
GTCCTGTGTATTTCAATGTT+TGG - chr3_1:86821394-86821413 Msa0383800:intron 35.0%
ATTTCAATGTTTGGGCCTTT+AGG - chr3_1:86821403-86821422 Msa0383800:intron 35.0%
TTTCAATGTTTGGGCCTTTA+GGG - chr3_1:86821404-86821423 Msa0383800:intron 35.0%
CTCAAATATTTGCGAACACA+AGG + chr3_1:86821672-86821691 None:intergenic 35.0%
!!! GTCTGAAATGAGTTTTTTGC+AGG - chr3_1:86821727-86821746 Msa0383800:intron 35.0%
! TGTGGATTAATATCAGCATG+TGG + chr3_1:86821939-86821958 None:intergenic 35.0%
!!! CAATGCCATTTTTACTTTGG+TGG - chr3_1:86821982-86822001 Msa0383800:intron 35.0%
ATGGACCACCAAAGTAAAAA+TGG + chr3_1:86821990-86822009 None:intergenic 35.0%
CAGTTAATTATCTGGTGTTC+TGG - chr3_1:86822186-86822205 Msa0383800:intron 35.0%
! ATTTTCGACAATGACATCAG+TGG - chr3_1:86822559-86822578 Msa0383800:intron 35.0%
TTCATAGCTTTCCCCTTATA+GGG - chr3_1:86822700-86822719 Msa0383800:intron 35.0%
AATCTAGTACACCCTATAAG+GGG + chr3_1:86822714-86822733 None:intergenic 35.0%
AAAGGAGAAACTGTTTAAGC+TGG + chr3_1:86822740-86822759 None:intergenic 35.0%
ACTCTGACTTCCTTTACAAA+AGG + chr3_1:86822758-86822777 None:intergenic 35.0%
! AAGTCAGAGTCAGATTTGTT+GGG - chr3_1:86822768-86822787 Msa0383800:intron 35.0%
AAACTTTGACCTAAATCACC+TGG + chr3_1:86822910-86822929 None:intergenic 35.0%
GATGTCCTTTAACTGTTCTA+TGG + chr3_1:86822938-86822957 None:intergenic 35.0%
!!! TGGGTGTTATTTCTGCATTT+TGG - chr3_1:86823115-86823134 Msa0383800:intron 35.0%
! ATATCTAAGATCTTGGTCTG+TGG + chr3_1:86823230-86823249 None:intergenic 35.0%
!! TTCTCCCTCCCTTTTTAATT+AGG - chr3_1:86823396-86823415 Msa0383800:intron 35.0%
ACTCCCGACCTAATTAAAAA+GGG + chr3_1:86823407-86823426 None:intergenic 35.0%
CAATGTGCGTAGAAATTAGA+AGG - chr3_1:86823427-86823446 Msa0383800:intron 35.0%
ATGTGCGTAGAAATTAGAAG+GGG - chr3_1:86823429-86823448 Msa0383800:intron 35.0%
!! GAAAAGAGTTGAGTTGACGA+TGG - chr3_1:86820764-86820783 Msa0383800:three_prime_UTR 40.0%
TTCTGGATTCACCAATTCTG+AGG - chr3_1:86820818-86820837 Msa0383800:three_prime_UTR 40.0%
! ATTGGTTTCTCCTCAATGCA+AGG - chr3_1:86821294-86821313 Msa0383800:CDS 40.0%
GCCCAAACATTGAAATACAC+AGG + chr3_1:86821399-86821418 None:intergenic 40.0%
! CATATCTGAAGTGACCCTAA+AGG + chr3_1:86821421-86821440 None:intergenic 40.0%
AGAAAATGACACCAAGGACA+AGG - chr3_1:86821555-86821574 Msa0383800:intron 40.0%
AGCAATGAGGGACTATCAAA+AGG - chr3_1:86821590-86821609 Msa0383800:intron 40.0%
TTAAACCAGCACTTCTAGTG+AGG - chr3_1:86821700-86821719 Msa0383800:intron 40.0%
ATTCCAACTCTGATGAGTCT+CGG + chr3_1:86821762-86821781 None:intergenic 40.0%
! TGTGGTGTGTTTCAAGTGAA+AGG - chr3_1:86822389-86822408 Msa0383800:intron 40.0%
CACACAGATTTCTTAGCACA+GGG - chr3_1:86822650-86822669 Msa0383800:intron 40.0%
ACACAGATTTCTTAGCACAG+GGG - chr3_1:86822651-86822670 Msa0383800:intron 40.0%
GTTCATAGCTTTCCCCTTAT+AGG - chr3_1:86822699-86822718 Msa0383800:intron 40.0%
GAAGTCAGAGTCAGATTTGT+TGG - chr3_1:86822767-86822786 Msa0383800:intron 40.0%
!! AGAGTCAGATTTGTTGGGTT+TGG - chr3_1:86822773-86822792 Msa0383800:intron 40.0%
! ATAGTCTCCAACTTTCAGGT+TGG + chr3_1:86822876-86822895 None:intergenic 40.0%
GAACATAGTCTCCAACTTTC+AGG + chr3_1:86822880-86822899 None:intergenic 40.0%
CCTTTAACTGTTCTATGGTG+AGG + chr3_1:86822933-86822952 None:intergenic 40.0%
CCTCACCATAGAACAGTTAA+AGG - chr3_1:86822930-86822949 Msa0383800:CDS 40.0%
CTCACATTGTAGAGATCCAA+AGG - chr3_1:86823025-86823044 Msa0383800:CDS 40.0%
GGATATCATGCATTCTCCTT+TGG + chr3_1:86823044-86823063 None:intergenic 40.0%
ATATGATCACGACAACAACG+AGG - chr3_1:86823092-86823111 Msa0383800:intron 40.0%
TATTTCTTTGACGTTCCAGC+TGG - chr3_1:86823259-86823278 Msa0383800:intron 40.0%
ATTTCTTTGACGTTCCAGCT+GGG - chr3_1:86823260-86823279 Msa0383800:intron 40.0%
AGTTTGCAGTTACCTGGATA+TGG - chr3_1:86823299-86823318 Msa0383800:intron 40.0%
GTTTGATTCTTGCCATATCC+AGG + chr3_1:86823314-86823333 None:intergenic 40.0%
CCGACCTAATTAAAAAGGGA+GGG + chr3_1:86823403-86823422 None:intergenic 40.0%
!! CCCTCCCTTTTTAATTAGGT+CGG - chr3_1:86823400-86823419 Msa0383800:intron 40.0%
!! CCTCCCTTTTTAATTAGGTC+GGG - chr3_1:86823401-86823420 Msa0383800:intron 40.0%
GACTCCCGACCTAATTAAAA+AGG + chr3_1:86823408-86823427 None:intergenic 40.0%
!! GTAGGAAGGTACCTCAGAAT+TGG + chr3_1:86820832-86820851 None:intergenic 45.0%
CTGGGAAACCTGTCATCAAA+TGG - chr3_1:86821115-86821134 Msa0383800:intron 45.0%
! ACCTGTCATCAAATGGACTC+AGG - chr3_1:86821122-86821141 Msa0383800:intron 45.0%
! ACCTGAGTCCATTTGATGAC+AGG + chr3_1:86821126-86821145 None:intergenic 45.0%
!! GAGGTACTTTTGGTGAGTCT+TGG + chr3_1:86821267-86821286 None:intergenic 45.0%
GTTTCTCCTCAATGCAAGGA+AGG - chr3_1:86821298-86821317 Msa0383800:CDS 45.0%
AAGTGACTGGGAAGCAATGA+GGG - chr3_1:86821578-86821597 Msa0383800:intron 45.0%
!! GAAGTGCTGGTTTAAGCAGT+TGG + chr3_1:86821695-86821714 None:intergenic 45.0%
TTCCAACTCTGATGAGTCTC+GGG + chr3_1:86821761-86821780 None:intergenic 45.0%
GATCTTCGAAAGACCAAGCA+TGG - chr3_1:86821791-86821810 Msa0383800:intron 45.0%
CACTGATCTCACTGTATTCC+TGG - chr3_1:86822029-86822048 Msa0383800:intron 45.0%
! TGTCAAATCGAAAGCATGCC+AGG + chr3_1:86822050-86822069 None:intergenic 45.0%
TTGCCTAGTCGTAGACATAC+AGG - chr3_1:86822530-86822549 Msa0383800:CDS 45.0%
CTGCAGCAAACCTTTAGACT+TGG + chr3_1:86822607-86822626 None:intergenic 45.0%
!! CAAGTCTAAAGGTTTGCTGC+AGG - chr3_1:86822605-86822624 Msa0383800:intron 45.0%
GCACACAGATTTCTTAGCAC+AGG - chr3_1:86822649-86822668 Msa0383800:intron 45.0%
! ATTTGTTGGGTTTGGAGCTG+AGG - chr3_1:86822781-86822800 Msa0383800:intron 45.0%
CTCAGTTCCTTTCGAGAACA+CGG - chr3_1:86822844-86822863 Msa0383800:intron 45.0%
GAGTGTTCCAACCTGAAAGT+TGG - chr3_1:86822866-86822885 Msa0383800:intron 45.0%
AGACTATGTTCTGTGCTTCC+AGG - chr3_1:86822889-86822908 Msa0383800:intron 45.0%
TCTGTGCTTCCAGGTGATTT+AGG - chr3_1:86822898-86822917 Msa0383800:intron 45.0%
AGGAGAATGCATGATATCCG+AGG - chr3_1:86823045-86823064 Msa0383800:CDS 45.0%
AAATGTGACACCTGCAACCT+CGG + chr3_1:86823065-86823084 None:intergenic 45.0%
TCTAGGAAAGAGTTCGCTTG+AGG - chr3_1:86823196-86823215 Msa0383800:CDS 45.0%
TCCAACAGTTTGCAGTTACC+TGG - chr3_1:86823293-86823312 Msa0383800:intron 45.0%
TCCAGGTAACTGCAAACTGT+TGG + chr3_1:86823297-86823316 None:intergenic 45.0%
CCCGACCTAATTAAAAAGGG+AGG + chr3_1:86823404-86823423 None:intergenic 45.0%
TGCGTAGAAATTAGAAGGGG+TGG - chr3_1:86823432-86823451 Msa0383800:intron 45.0%
GCGTAGAAATTAGAAGGGGT+GGG - chr3_1:86823433-86823452 Msa0383800:intron 45.0%
! ATTAGAAGGGGTGGGTCTTT+TGG - chr3_1:86823441-86823460 Msa0383800:intron 45.0%
TCCCACTTCCACTTCCACTT+CGG + chr3_1:86820673-86820692 None:intergenic 50.0%
TGGAAGTGGAAGTGGGAAGT+GGG - chr3_1:86820676-86820695 Msa0383800:three_prime_UTR 50.0%
AGCTTATCATCTGGTCGTGC+TGG - chr3_1:86821096-86821115 Msa0383800:CDS 50.0%
GCTTATCATCTGGTCGTGCT+GGG - chr3_1:86821097-86821116 Msa0383800:CDS 50.0%
GTCTGACCTTCCTTGCATTG+AGG + chr3_1:86821307-86821326 None:intergenic 50.0%
ACCAAGGACAAGGAAGTGAC+TGG - chr3_1:86821565-86821584 Msa0383800:intron 50.0%
CCAAGGACAAGGAAGTGACT+GGG - chr3_1:86821566-86821585 Msa0383800:intron 50.0%
GAAGTGACTGGGAAGCAATG+AGG - chr3_1:86821577-86821596 Msa0383800:intron 50.0%
! CTCAACCTCACTAGAAGTGC+TGG + chr3_1:86821708-86821727 None:intergenic 50.0%
GCATATGTGCTCACCATGCT+TGG + chr3_1:86821807-86821826 None:intergenic 50.0%
GTGCCTGTATGTCTACGACT+AGG + chr3_1:86822536-86822555 None:intergenic 50.0%
TTGGAGCTGAGGAAGATGAG+TGG - chr3_1:86822792-86822811 Msa0383800:CDS 50.0%
TGGAGCTGAGGAAGATGAGT+GGG - chr3_1:86822793-86822812 Msa0383800:CDS 50.0%
GAACACTCCGTGTTCTCGAA+AGG + chr3_1:86822854-86822873 None:intergenic 50.0%
TGCATGATATCCGAGGTTGC+AGG - chr3_1:86823052-86823071 Msa0383800:CDS 50.0%
TGATCACGACAACAACGAGG+TGG - chr3_1:86823095-86823114 Msa0383800:intron 50.0%
GATCACGACAACAACGAGGT+GGG - chr3_1:86823096-86823115 Msa0383800:intron 50.0%
TGGAAAGCTACTTACCCAGC+TGG + chr3_1:86823277-86823296 None:intergenic 50.0%
CCACTTCCACTTCCACTTCG+GGG + chr3_1:86820671-86820690 None:intergenic 55.0%
CCCACTTCCACTTCCACTTC+GGG + chr3_1:86820672-86820691 None:intergenic 55.0%
CCCGAAGTGGAAGTGGAAGT+GGG - chr3_1:86820669-86820688 Msa0383800:three_prime_UTR 55.0%
GTGGAAGTGGAAGTGGGAAG+TGG - chr3_1:86820675-86820694 Msa0383800:three_prime_UTR 55.0%
TGGAAGTGGGAAGTGGGAAG+TGG - chr3_1:86820682-86820701 Msa0383800:three_prime_UTR 55.0%
GGAAGTGGGAAGTGGGAAGT+GGG - chr3_1:86820683-86820702 Msa0383800:three_prime_UTR 55.0%
TGGGAAGTGGGAAGTGGGAA+GGG - chr3_1:86820688-86820707 Msa0383800:three_prime_UTR 55.0%
CCCAGTCACTTCCTTGTCCT+TGG + chr3_1:86821569-86821588 None:intergenic 55.0%
CACCCGAGACTCATCAGAGT+TGG - chr3_1:86821756-86821775 Msa0383800:intron 55.0%
CGAAAGGAACTGAGCGTTCC+CGG + chr3_1:86822838-86822857 None:intergenic 55.0%
CCCCGAAGTGGAAGTGGAAG+TGG - chr3_1:86820668-86820687 Msa0383800:three_prime_UTR 60.0%
GTGGGAAGTGGGAAGTGGGA+AGG - chr3_1:86820687-86820706 Msa0383800:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86820667 86823654 86820667 ID=Msa0383800;Name=Msa0383800
chr3_1 mRNA 86820667 86823654 86820667 ID=Msa0383800-mRNA-1;Parent=Msa0383800;Name=Msa0383800-mRNA-1;_AED=0.28;_eAED=0.28;_QI=116|0.77|0.8|0.9|0.88|0.9|10|409|277
chr3_1 exon 86820667 86821120 86820667 ID=Msa0383800-mRNA-1:exon:23046;Parent=Msa0383800-mRNA-1
chr3_1 exon 86821208 86821327 86821208 ID=Msa0383800-mRNA-1:exon:23045;Parent=Msa0383800-mRNA-1
chr3_1 exon 86821411 86821554 86821411 ID=Msa0383800-mRNA-1:exon:23044;Parent=Msa0383800-mRNA-1
chr3_1 exon 86821643 86821694 86821643 ID=Msa0383800-mRNA-1:exon:23043;Parent=Msa0383800-mRNA-1
chr3_1 exon 86822509 86822572 86822509 ID=Msa0383800-mRNA-1:exon:23042;Parent=Msa0383800-mRNA-1
chr3_1 exon 86822790 86822845 86822790 ID=Msa0383800-mRNA-1:exon:23041;Parent=Msa0383800-mRNA-1
chr3_1 exon 86822923 86823083 86822923 ID=Msa0383800-mRNA-1:exon:23040;Parent=Msa0383800-mRNA-1
chr3_1 exon 86823178 86823223 86823178 ID=Msa0383800-mRNA-1:exon:23039;Parent=Msa0383800-mRNA-1
chr3_1 exon 86823308 86823396 86823308 ID=Msa0383800-mRNA-1:exon:23038;Parent=Msa0383800-mRNA-1
chr3_1 exon 86823482 86823654 86823482 ID=Msa0383800-mRNA-1:exon:23037;Parent=Msa0383800-mRNA-1
chr3_1 five_prime_UTR 86823539 86823654 86823539 ID=Msa0383800-mRNA-1:five_prime_utr;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86823482 86823538 86823482 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86823308 86823396 86823308 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86823178 86823223 86823178 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86822923 86823083 86822923 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86822790 86822845 86822790 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86822509 86822572 86822509 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86821643 86821694 86821643 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86821411 86821554 86821411 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86821208 86821327 86821208 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 CDS 86821076 86821120 86821076 ID=Msa0383800-mRNA-1:cds;Parent=Msa0383800-mRNA-1
chr3_1 three_prime_UTR 86820667 86821075 86820667 ID=Msa0383800-mRNA-1:three_prime_utr;Parent=Msa0383800-mRNA-1
Gene Sequence

>Msa0383800

ATGGATCGCTTGCGTCCTCGTAACAGACCTATTTTTTCTGGATTCACCAATTCTGAGATTGAGAAAATGGAAAAATTGCTAAGGGAATCATCAAAAGGACAATCATTCACCCTCGATTTTTACCAAAAACTAGCCAAAAGTTTCAACTTATCATCTGGTCGTGCTGGGAAACCTGTCATCAAATGGACTCAGGTACATAGTTGGTTTCAGACTAGACTCCAAGACTCACCAAAAGTACCTCAAAATGAATTGGTTTCTCCTCAATGCAAGGAAGGTCAGACTTCCTACATTACCTTAAACGTTGTTAGGATAGTTGGTGCTGTCTTCAAGCATTCTAATGATCACATTGTCCTAATGCGGCTTGTGAAACTTTATAATGTCAATTTGATGTTAAACTGCATTGATTATGGAGAAAACACCCGAGACTCATCAGAGTTGGAATTTGAAGCGAGATCTTCGAAAGACCAAGCATGGTACGATGTTGAGACATTTCTTGCACACAGATTTCTTAGCACAGGGGAACCTGAAGTCAGAGTCAGATTTGTTGGGTTTGGAGCTGAGGAAGATGAGTGGGTCAACATAAAAAATTCAGTCCGGGAACGCTCAGTTCCTTTCGAGAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTATGTTCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATTTTAATTCGATATGATCACGACAACAACGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCACAGACCAAGATCTTAG

Protein sequence

>Msa0383800

MDRLRPRNRPIFSGFTNSEIEKMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTQVHSWFQTRLQDSPKVPQNELVSPQCKEGQTSYITLNVVRIVGAVFKHSNDHIVLMRLVKLYNVNLMLNCIDYGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNEERVRLRRLCHRPRS*