AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329450 MtrunA17_Chr4g0053801 68.063 191 20 1 1 150 1 191 1.29e-81 242
Msa1329450 MtrunA17_Chr5g0401481 49.724 181 50 3 1 141 1 180 1.06e-46 154
Msa1329450 MtrunA17_Chr8g0371281 40.909 88 49 2 45 132 67 151 1.14e-15 72.0
Msa1329450 MtrunA17_Chr5g0406051 38.636 88 51 2 45 132 79 163 5.01e-14 67.8
Msa1329450 MtrunA17_Chr2g0286811 33.835 133 79 5 23 150 15 143 1.27e-13 66.6
Msa1329450 MtrunA17_Chr8g0371221 36.364 88 53 2 45 132 68 152 2.16e-13 65.9
Msa1329450 MtrunA17_Chr3g0143381 40.000 90 49 3 44 132 69 154 2.21e-13 65.9
Msa1329450 MtrunA17_Chr8g0371251 36.364 88 53 2 45 132 69 153 2.43e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329450 AT4G33910.1 45.989 187 62 1 6 153 1 187 1.18e-44 148
Msa1329450 AT2G23096.1 39.073 151 57 3 14 132 6 153 8.04e-26 99.4
Msa1329450 AT1G20270.2 38.202 89 52 2 44 132 76 161 5.23e-15 69.3
Msa1329450 AT1G20270.3 38.202 89 52 2 44 132 76 161 5.23e-15 69.3
Msa1329450 AT1G20270.1 38.202 89 52 2 44 132 76 161 3.51e-14 68.6
Msa1329450 AT2G17720.1 38.636 88 51 2 45 132 81 165 6.10e-14 67.8
Msa1329450 AT5G66060.1 36.364 88 53 2 45 132 79 163 8.79e-13 64.7
Msa1329450 AT4G35810.1 37.079 89 51 3 45 132 81 165 3.67e-12 62.8
Msa1329450 AT4G35810.2 37.079 89 51 3 45 132 81 165 3.67e-12 62.8

Find 38 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCAGCAGTTGCAAAATT+TGG 0.148059 8_4:-48067927 None:intergenic
GGTGTGTTTATTAGTGCTTC+TGG 0.184028 8_4:+48068488 Msa1329450:CDS
TGCATCTTCTTCTTCCTTGC+TGG 0.220163 8_4:+48066604 Msa1329450:CDS
GTGTGTTTATTAGTGCTTCT+GGG 0.312043 8_4:+48068489 Msa1329450:CDS
AAACAGTTAAATCATCAAAT+TGG 0.319443 8_4:+48066536 Msa1329450:CDS
TTCTTCCTTGCTGGTTTCTT+CGG 0.326739 8_4:+48066613 Msa1329450:CDS
GGAGAGAGGGCGAGCTGAAA+AGG 0.410979 8_4:-48068595 None:intergenic
CACACGTGGACTTTGAAATC+TGG 0.415016 8_4:+48066455 Msa1329450:five_prime_UTR
TCGCCCTCTCTCCGCAGAAA+AGG 0.435706 8_4:+48068605 Msa1329450:CDS
ATCATCATTGGCTTTGCGTA+AGG 0.443535 8_4:+48067992 Msa1329450:CDS
GGATAAAACAAAGACTTTAG+AGG 0.482979 8_4:+48068511 Msa1329450:CDS
ATACCTTGTTCTAATTCCCT+TGG 0.486870 8_4:-48068033 None:intergenic
CGAGAGCAACAATGATTCCT+AGG 0.487275 8_4:+48068552 Msa1329450:CDS
TTACGCAAAGCCAATGATGA+TGG 0.495399 8_4:-48067990 None:intergenic
GGAAGAAGAAGATGCATATG+AGG 0.496237 8_4:-48066597 None:intergenic
AGGACTCAAACCATCATCAT+TGG 0.500450 8_4:+48067980 Msa1329450:CDS
GTTACCTCTCCATGACTCCT+AGG 0.504007 8_4:-48068569 None:intergenic
GAGAGAGGGCGAGCTGAAAA+GGG 0.510549 8_4:-48068594 None:intergenic
ATAGTTTCTGTGGCAAAGGC+AGG 0.519985 8_4:+48067960 Msa1329450:CDS
TTAGATTGTCAAGGTCATAC+AGG 0.529037 8_4:-48068631 None:intergenic
ACAATGATTCCTAGGAGTCA+TGG 0.552565 8_4:+48068560 Msa1329450:CDS
TCATCATTGGCTTTGCGTAA+GGG 0.554646 8_4:+48067993 Msa1329450:CDS
ATGCATATGAGGAAAACGTA+AGG 0.561296 8_4:-48066586 None:intergenic
TGTGTTTATTAGTGCTTCTG+GGG 0.569933 8_4:+48068490 Msa1329450:CDS
TTTAGCACATTAGATTGTCA+AGG 0.571521 8_4:-48068640 None:intergenic
AAACATAGTTTCTGTGGCAA+AGG 0.573162 8_4:+48067956 Msa1329450:CDS
ATGTGAAAACATAGTTTCTG+TGG 0.587060 8_4:+48067950 Msa1329450:CDS
AAAGACTTTAGAGGTCATTG+AGG 0.588536 8_4:+48068520 Msa1329450:CDS
TTTGGAAAATACAGAGCTCG+TGG 0.594018 8_4:-48067909 None:intergenic
CAGATTTCAAAGTCCACGTG+TGG 0.597617 8_4:-48066454 None:intergenic
TTGTTTCAATTAACCACACG+TGG 0.615662 8_4:+48066441 Msa1329450:five_prime_UTR
TGCATATGAGGAAAACGTAA+GGG 0.619030 8_4:-48066585 None:intergenic
ATGAACCGAAGAAACCAGCA+AGG 0.650368 8_4:-48066618 None:intergenic
AGAAACTGCGGAGAATACCA+AGG 0.661441 8_4:+48068016 Msa1329450:CDS
ATACCAAGGGAATTAGAACA+AGG 0.674307 8_4:+48068030 Msa1329450:CDS
GATTCCTAGGAGTCATGGAG+AGG 0.681493 8_4:+48068565 Msa1329450:CDS
GAAACTGCGGAGAATACCAA+GGG 0.707856 8_4:+48068017 Msa1329450:CDS
TTTGCGTAAGGGAGAAACTG+CGG 0.711129 8_4:+48068004 Msa1329450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATATATTATTAGAATT+TGG + chr8_4:48068211-48068230 Msa1329450:intron 10.0%
!! AAGAATATATTATTAGAATT+TGG + chr8_4:48068211-48068230 Msa1329450:intron 10.0%
!!! AAAACTATTTTTAAACTTTC+AGG + chr8_4:48067624-48067643 Msa1329450:intron 15.0%
!!! CAAAAGAATATTTCTATATT+TGG + chr8_4:48067665-48067684 Msa1329450:intron 15.0%
!! TCTAATAATATATTCTTTCT+AGG - chr8_4:48068208-48068227 None:intergenic 15.0%
!! ATATATTATTAGAATTTGGA+AGG + chr8_4:48068215-48068234 Msa1329450:intron 15.0%
!!! AAAACTATTTTTAAACTTTC+AGG + chr8_4:48067624-48067643 Msa1329450:intron 15.0%
!!! CAAAAGAATATTTCTATATT+TGG + chr8_4:48067665-48067684 Msa1329450:intron 15.0%
!! TCTAATAATATATTCTTTCT+AGG - chr8_4:48068208-48068227 None:intergenic 15.0%
!! ATATATTATTAGAATTTGGA+AGG + chr8_4:48068215-48068234 Msa1329450:intron 15.0%
!! AAACAGTTAAATCATCAAAT+TGG + chr8_4:48066536-48066555 Msa1329450:CDS 20.0%
!! AAAGTTAGAATTGCTAAATA+TGG - chr8_4:48067187-48067206 None:intergenic 20.0%
!!! TAATTATTGTTTTGGAGTTT+AGG + chr8_4:48067317-48067336 Msa1329450:intron 20.0%
!!! GAAATTTGGAGTTTTTTATT+TGG + chr8_4:48067377-48067396 Msa1329450:intron 20.0%
!!! GAAAATGTGTTTTTTTTGTT+TGG - chr8_4:48067433-48067452 None:intergenic 20.0%
!!! ATTTTGATGTGAATGAAATT+CGG + chr8_4:48067521-48067540 Msa1329450:intron 20.0%
!!! ATATTTCTATATTTGGTTCT+TGG + chr8_4:48067672-48067691 Msa1329450:intron 20.0%
!!! TATTTCTATATTTGGTTCTT+GGG + chr8_4:48067673-48067692 Msa1329450:intron 20.0%
!! AAACAGTTAAATCATCAAAT+TGG + chr8_4:48066536-48066555 Msa1329450:CDS 20.0%
!! AAAGTTAGAATTGCTAAATA+TGG - chr8_4:48067187-48067206 None:intergenic 20.0%
!!! TAATTATTGTTTTGGAGTTT+AGG + chr8_4:48067317-48067336 Msa1329450:intron 20.0%
!!! GAAATTTGGAGTTTTTTATT+TGG + chr8_4:48067377-48067396 Msa1329450:intron 20.0%
!!! GAAAATGTGTTTTTTTTGTT+TGG - chr8_4:48067433-48067452 None:intergenic 20.0%
!!! ATTTTGATGTGAATGAAATT+CGG + chr8_4:48067521-48067540 Msa1329450:intron 20.0%
!!! ATATTTCTATATTTGGTTCT+TGG + chr8_4:48067672-48067691 Msa1329450:intron 20.0%
!!! TATTTCTATATTTGGTTCTT+GGG + chr8_4:48067673-48067692 Msa1329450:intron 20.0%
!!! AACTGTTTTGATTCTCATTT+GGG - chr8_4:48066524-48066543 None:intergenic 25.0%
!!! TAACTGTTTTGATTCTCATT+TGG - chr8_4:48066525-48066544 None:intergenic 25.0%
!!! ATAGAAGTTAACTTGTATCA+CGG + chr8_4:48066724-48066743 Msa1329450:intron 25.0%
!!! ATTGTTATGTTTTTACAGGA+TGG + chr8_4:48066878-48066897 Msa1329450:intron 25.0%
! ACTTAAGTATTTAGCTGAAT+AGG + chr8_4:48067147-48067166 Msa1329450:intron 25.0%
!! AGCCTGTATAATTATTGTTT+TGG + chr8_4:48067309-48067328 Msa1329450:intron 25.0%
! CTCCAAAACAATAATTATAC+AGG - chr8_4:48067314-48067333 None:intergenic 25.0%
! TAGACTTTAATGTGAATTAG+TGG + chr8_4:48067355-48067374 Msa1329450:intron 25.0%
! AATGTGAATTAGTGGAAATT+TGG + chr8_4:48067363-48067382 Msa1329450:intron 25.0%
! TACTTAACAAGTGACTTAAA+AGG - chr8_4:48067576-48067595 None:intergenic 25.0%
! GATCTTTAATCAATTAACAC+AGG - chr8_4:48067715-48067734 None:intergenic 25.0%
!! AATGAGCGAAAATTTGAAAT+TGG + chr8_4:48067818-48067837 Msa1329450:intron 25.0%
!!! ATATGTTGTCTGTGTTTTTT+AGG + chr8_4:48067872-48067891 Msa1329450:intron 25.0%
!!! AGTTAACCATTTGATTTTGT+CGG - chr8_4:48068125-48068144 None:intergenic 25.0%
!! CTTCACAAAAAAAGTATGTA+CGG + chr8_4:48068163-48068182 Msa1329450:intron 25.0%
!!! TGTAACATAATGTCGATTTT+AGG - chr8_4:48068417-48068436 None:intergenic 25.0%
!!! AACTGTTTTGATTCTCATTT+GGG - chr8_4:48066524-48066543 None:intergenic 25.0%
!!! TAACTGTTTTGATTCTCATT+TGG - chr8_4:48066525-48066544 None:intergenic 25.0%
!!! ATAGAAGTTAACTTGTATCA+CGG + chr8_4:48066724-48066743 Msa1329450:intron 25.0%
!!! ATTGTTATGTTTTTACAGGA+TGG + chr8_4:48066878-48066897 Msa1329450:intron 25.0%
! ACTTAAGTATTTAGCTGAAT+AGG + chr8_4:48067147-48067166 Msa1329450:intron 25.0%
!! AGCCTGTATAATTATTGTTT+TGG + chr8_4:48067309-48067328 Msa1329450:intron 25.0%
! CTCCAAAACAATAATTATAC+AGG - chr8_4:48067314-48067333 None:intergenic 25.0%
! TAGACTTTAATGTGAATTAG+TGG + chr8_4:48067355-48067374 Msa1329450:intron 25.0%
! AATGTGAATTAGTGGAAATT+TGG + chr8_4:48067363-48067382 Msa1329450:intron 25.0%
! TACTTAACAAGTGACTTAAA+AGG - chr8_4:48067576-48067595 None:intergenic 25.0%
! GATCTTTAATCAATTAACAC+AGG - chr8_4:48067715-48067734 None:intergenic 25.0%
!! AATGAGCGAAAATTTGAAAT+TGG + chr8_4:48067818-48067837 Msa1329450:intron 25.0%
!!! ATATGTTGTCTGTGTTTTTT+AGG + chr8_4:48067872-48067891 Msa1329450:intron 25.0%
!!! AGTTAACCATTTGATTTTGT+CGG - chr8_4:48068125-48068144 None:intergenic 25.0%
!! CTTCACAAAAAAAGTATGTA+CGG + chr8_4:48068163-48068182 Msa1329450:intron 25.0%
!!! TGTAACATAATGTCGATTTT+AGG - chr8_4:48068417-48068436 None:intergenic 25.0%
TTTCATAGGAAGTAACTCAT+GGG + chr8_4:48066853-48066872 Msa1329450:intron 30.0%
!! GGTGATTGTTATGTTTTTAC+AGG + chr8_4:48066874-48066893 Msa1329450:intron 30.0%
! AAGTATAATTTGATGACTGC+TGG + chr8_4:48066956-48066975 Msa1329450:intron 30.0%
!! TCTTTTGCTGAATGTTGTTT+TGG + chr8_4:48067050-48067069 Msa1329450:intron 30.0%
TTGTTTGGTAGATGACTTAA+AGG - chr8_4:48067418-48067437 None:intergenic 30.0%
!! TCCTTTTAAGTCGCTTATTA+AGG + chr8_4:48067451-48067470 Msa1329450:intron 30.0%
TCCTTAATAAGCGACTTAAA+AGG - chr8_4:48067455-48067474 None:intergenic 30.0%
GAAATTCGGAATTTGTCATT+AGG + chr8_4:48067535-48067554 Msa1329450:intron 30.0%
GTGTTAAGCGTATATTCTAA+TGG + chr8_4:48067736-48067755 Msa1329450:intron 30.0%
TTAAGCGTATATTCTAATGG+AGG + chr8_4:48067739-48067758 Msa1329450:intron 30.0%
ATGTGAAAACATAGTTTCTG+TGG + chr8_4:48067950-48067969 Msa1329450:CDS 30.0%
!! AATTAGAACAAGGTATTGTG+TGG + chr8_4:48068040-48068059 Msa1329450:intron 30.0%
!! ATTAGAACAAGGTATTGTGT+GGG + chr8_4:48068041-48068060 Msa1329450:intron 30.0%
!! GTTAACCATTTGATTTTGTC+GGG - chr8_4:48068124-48068143 None:intergenic 30.0%
ATTAGAATTTGGAAGGACAA+AGG + chr8_4:48068222-48068241 Msa1329450:intron 30.0%
GCAAGTTTATATAAAACGTG+AGG + chr8_4:48068246-48068265 Msa1329450:intron 30.0%
! AAAACGTGAGGTATCATTAT+AGG + chr8_4:48068258-48068277 Msa1329450:intron 30.0%
! ATGAATCTGACAGAGATTTT+CGG + chr8_4:48068343-48068362 Msa1329450:intron 30.0%
!! ATCTTTTGTTTAAACAGCTC+TGG + chr8_4:48068467-48068486 Msa1329450:intron 30.0%
GGATAAAACAAAGACTTTAG+AGG + chr8_4:48068511-48068530 Msa1329450:CDS 30.0%
TTTCATAGGAAGTAACTCAT+GGG + chr8_4:48066853-48066872 Msa1329450:intron 30.0%
!! GGTGATTGTTATGTTTTTAC+AGG + chr8_4:48066874-48066893 Msa1329450:intron 30.0%
! AAGTATAATTTGATGACTGC+TGG + chr8_4:48066956-48066975 Msa1329450:intron 30.0%
!! TCTTTTGCTGAATGTTGTTT+TGG + chr8_4:48067050-48067069 Msa1329450:intron 30.0%
TTGTTTGGTAGATGACTTAA+AGG - chr8_4:48067418-48067437 None:intergenic 30.0%
!! TCCTTTTAAGTCGCTTATTA+AGG + chr8_4:48067451-48067470 Msa1329450:intron 30.0%
TCCTTAATAAGCGACTTAAA+AGG - chr8_4:48067455-48067474 None:intergenic 30.0%
GAAATTCGGAATTTGTCATT+AGG + chr8_4:48067535-48067554 Msa1329450:intron 30.0%
GTGTTAAGCGTATATTCTAA+TGG + chr8_4:48067736-48067755 Msa1329450:intron 30.0%
TTAAGCGTATATTCTAATGG+AGG + chr8_4:48067739-48067758 Msa1329450:intron 30.0%
ATGTGAAAACATAGTTTCTG+TGG + chr8_4:48067950-48067969 Msa1329450:CDS 30.0%
!! AATTAGAACAAGGTATTGTG+TGG + chr8_4:48068040-48068059 Msa1329450:intron 30.0%
!! ATTAGAACAAGGTATTGTGT+GGG + chr8_4:48068041-48068060 Msa1329450:intron 30.0%
!! GTTAACCATTTGATTTTGTC+GGG - chr8_4:48068124-48068143 None:intergenic 30.0%
ATTAGAATTTGGAAGGACAA+AGG + chr8_4:48068222-48068241 Msa1329450:intron 30.0%
GCAAGTTTATATAAAACGTG+AGG + chr8_4:48068246-48068265 Msa1329450:intron 30.0%
! AAAACGTGAGGTATCATTAT+AGG + chr8_4:48068258-48068277 Msa1329450:intron 30.0%
! ATGAATCTGACAGAGATTTT+CGG + chr8_4:48068343-48068362 Msa1329450:intron 30.0%
!! ATCTTTTGTTTAAACAGCTC+TGG + chr8_4:48068467-48068486 Msa1329450:intron 30.0%
GGATAAAACAAAGACTTTAG+AGG + chr8_4:48068511-48068530 Msa1329450:CDS 30.0%
TTGTTTCAATTAACCACACG+TGG + chr8_4:48066441-48066460 Msa1329450:five_prime_UTR 35.0%
TGCATATGAGGAAAACGTAA+GGG - chr8_4:48066588-48066607 None:intergenic 35.0%
ATGCATATGAGGAAAACGTA+AGG - chr8_4:48066589-48066608 None:intergenic 35.0%
CACATACATGTGATATGTCT+TGG - chr8_4:48066757-48066776 None:intergenic 35.0%
GTTTCATAGGAAGTAACTCA+TGG + chr8_4:48066852-48066871 Msa1329450:intron 35.0%
!! ATGTTTTTACAGGATGGTGA+TGG + chr8_4:48066884-48066903 Msa1329450:intron 35.0%
CTGAAAAGGAATCGATGTAA+TGG - chr8_4:48066999-48067018 None:intergenic 35.0%
!!! CATTACATCGATTCCTTTTC+AGG + chr8_4:48066997-48067016 Msa1329450:intron 35.0%
!!! GTTTTGGTTGTGAATGTTGT+TGG + chr8_4:48067066-48067085 Msa1329450:intron 35.0%
!! GTTGTTGGCTTAGTTGAAAT+TGG + chr8_4:48067081-48067100 Msa1329450:intron 35.0%
! GGTTTGCTTCAAATTAACTC+TGG + chr8_4:48067760-48067779 Msa1329450:intron 35.0%
!!! GTGTTTTTTAGGTTTTGAGC+TGG + chr8_4:48067883-48067902 Msa1329450:intron 35.0%
TGTTCAGCAGTTGCAAAATT+TGG - chr8_4:48067930-48067949 None:intergenic 35.0%
AAACATAGTTTCTGTGGCAA+AGG + chr8_4:48067956-48067975 Msa1329450:CDS 35.0%
ATACCAAGGGAATTAGAACA+AGG + chr8_4:48068030-48068049 Msa1329450:CDS 35.0%
ATACCTTGTTCTAATTCCCT+TGG - chr8_4:48068036-48068055 None:intergenic 35.0%
! ATTTTAGGCAAACTGTACAG+AGG - chr8_4:48068402-48068421 None:intergenic 35.0%
GTGTGTTTATTAGTGCTTCT+GGG + chr8_4:48068489-48068508 Msa1329450:CDS 35.0%
TGTGTTTATTAGTGCTTCTG+GGG + chr8_4:48068490-48068509 Msa1329450:CDS 35.0%
! AAAGACTTTAGAGGTCATTG+AGG + chr8_4:48068520-48068539 Msa1329450:CDS 35.0%
TTAGATTGTCAAGGTCATAC+AGG - chr8_4:48068634-48068653 None:intergenic 35.0%
TTGTTTCAATTAACCACACG+TGG + chr8_4:48066441-48066460 Msa1329450:five_prime_UTR 35.0%
TGCATATGAGGAAAACGTAA+GGG - chr8_4:48066588-48066607 None:intergenic 35.0%
ATGCATATGAGGAAAACGTA+AGG - chr8_4:48066589-48066608 None:intergenic 35.0%
CACATACATGTGATATGTCT+TGG - chr8_4:48066757-48066776 None:intergenic 35.0%
GTTTCATAGGAAGTAACTCA+TGG + chr8_4:48066852-48066871 Msa1329450:intron 35.0%
!! ATGTTTTTACAGGATGGTGA+TGG + chr8_4:48066884-48066903 Msa1329450:intron 35.0%
CTGAAAAGGAATCGATGTAA+TGG - chr8_4:48066999-48067018 None:intergenic 35.0%
!!! CATTACATCGATTCCTTTTC+AGG + chr8_4:48066997-48067016 Msa1329450:intron 35.0%
!!! GTTTTGGTTGTGAATGTTGT+TGG + chr8_4:48067066-48067085 Msa1329450:intron 35.0%
!! GTTGTTGGCTTAGTTGAAAT+TGG + chr8_4:48067081-48067100 Msa1329450:intron 35.0%
! GGTTTGCTTCAAATTAACTC+TGG + chr8_4:48067760-48067779 Msa1329450:intron 35.0%
!!! GTGTTTTTTAGGTTTTGAGC+TGG + chr8_4:48067883-48067902 Msa1329450:intron 35.0%
TGTTCAGCAGTTGCAAAATT+TGG - chr8_4:48067930-48067949 None:intergenic 35.0%
AAACATAGTTTCTGTGGCAA+AGG + chr8_4:48067956-48067975 Msa1329450:CDS 35.0%
ATACCAAGGGAATTAGAACA+AGG + chr8_4:48068030-48068049 Msa1329450:CDS 35.0%
ATACCTTGTTCTAATTCCCT+TGG - chr8_4:48068036-48068055 None:intergenic 35.0%
! ATTTTAGGCAAACTGTACAG+AGG - chr8_4:48068402-48068421 None:intergenic 35.0%
GTGTGTTTATTAGTGCTTCT+GGG + chr8_4:48068489-48068508 Msa1329450:CDS 35.0%
TGTGTTTATTAGTGCTTCTG+GGG + chr8_4:48068490-48068509 Msa1329450:CDS 35.0%
! AAAGACTTTAGAGGTCATTG+AGG + chr8_4:48068520-48068539 Msa1329450:CDS 35.0%
TTAGATTGTCAAGGTCATAC+AGG - chr8_4:48068634-48068653 None:intergenic 35.0%
GGAAGAAGAAGATGCATATG+AGG - chr8_4:48066600-48066619 None:intergenic 40.0%
!! TTCTTCCTTGCTGGTTTCTT+CGG + chr8_4:48066613-48066632 Msa1329450:CDS 40.0%
! ATCTCTTTTCTCTCACTCTC+AGG + chr8_4:48066639-48066658 Msa1329450:CDS 40.0%
!! TTACAGGATGGTGATGGATA+TGG + chr8_4:48066890-48066909 Msa1329450:intron 40.0%
TCAGCAAAAGACTCGAATGT+TGG - chr8_4:48067041-48067060 None:intergenic 40.0%
TTTGGAAAATACAGAGCTCG+TGG - chr8_4:48067912-48067931 None:intergenic 40.0%
AGGACTCAAACCATCATCAT+TGG + chr8_4:48067980-48067999 Msa1329450:CDS 40.0%
TTACGCAAAGCCAATGATGA+TGG - chr8_4:48067993-48068012 None:intergenic 40.0%
!! ATCATCATTGGCTTTGCGTA+AGG + chr8_4:48067992-48068011 Msa1329450:CDS 40.0%
!! TCATCATTGGCTTTGCGTAA+GGG + chr8_4:48067993-48068012 Msa1329450:CDS 40.0%
GTGGGTGAGTTATTATGAAC+TGG + chr8_4:48068059-48068078 Msa1329450:intron 40.0%
TGAACTGGACTATGCAAGAA+TGG + chr8_4:48068074-48068093 Msa1329450:intron 40.0%
ACAGACCCGACAAAATCAAA+TGG + chr8_4:48068116-48068135 Msa1329450:intron 40.0%
GGTGTGTTTATTAGTGCTTC+TGG + chr8_4:48068488-48068507 Msa1329450:CDS 40.0%
ACAATGATTCCTAGGAGTCA+TGG + chr8_4:48068560-48068579 Msa1329450:CDS 40.0%
GGAAGAAGAAGATGCATATG+AGG - chr8_4:48066600-48066619 None:intergenic 40.0%
!! TTCTTCCTTGCTGGTTTCTT+CGG + chr8_4:48066613-48066632 Msa1329450:CDS 40.0%
! ATCTCTTTTCTCTCACTCTC+AGG + chr8_4:48066639-48066658 Msa1329450:CDS 40.0%
!! TTACAGGATGGTGATGGATA+TGG + chr8_4:48066890-48066909 Msa1329450:intron 40.0%
TCAGCAAAAGACTCGAATGT+TGG - chr8_4:48067041-48067060 None:intergenic 40.0%
TTTGGAAAATACAGAGCTCG+TGG - chr8_4:48067912-48067931 None:intergenic 40.0%
AGGACTCAAACCATCATCAT+TGG + chr8_4:48067980-48067999 Msa1329450:CDS 40.0%
TTACGCAAAGCCAATGATGA+TGG - chr8_4:48067993-48068012 None:intergenic 40.0%
!! ATCATCATTGGCTTTGCGTA+AGG + chr8_4:48067992-48068011 Msa1329450:CDS 40.0%
!! TCATCATTGGCTTTGCGTAA+GGG + chr8_4:48067993-48068012 Msa1329450:CDS 40.0%
GTGGGTGAGTTATTATGAAC+TGG + chr8_4:48068059-48068078 Msa1329450:intron 40.0%
TGAACTGGACTATGCAAGAA+TGG + chr8_4:48068074-48068093 Msa1329450:intron 40.0%
ACAGACCCGACAAAATCAAA+TGG + chr8_4:48068116-48068135 Msa1329450:intron 40.0%
GGTGTGTTTATTAGTGCTTC+TGG + chr8_4:48068488-48068507 Msa1329450:CDS 40.0%
ACAATGATTCCTAGGAGTCA+TGG + chr8_4:48068560-48068579 Msa1329450:CDS 40.0%
CAGATTTCAAAGTCCACGTG+TGG - chr8_4:48066457-48066476 None:intergenic 45.0%
!! CACACGTGGACTTTGAAATC+TGG + chr8_4:48066455-48066474 Msa1329450:five_prime_UTR 45.0%
TGCATCTTCTTCTTCCTTGC+TGG + chr8_4:48066604-48066623 Msa1329450:CDS 45.0%
ATGAACCGAAGAAACCAGCA+AGG - chr8_4:48066621-48066640 None:intergenic 45.0%
TAATGTGTCAGTGTCGTGTC+TGG + chr8_4:48066810-48066829 Msa1329450:intron 45.0%
! TGTCTGTGTCGGTGTTTCAT+AGG + chr8_4:48066839-48066858 Msa1329450:intron 45.0%
! TTGATGACTGCTGGAGAGTT+TGG + chr8_4:48066965-48066984 Msa1329450:intron 45.0%
ACAAAACCACGCACCTGAAA+AGG - chr8_4:48067013-48067032 None:intergenic 45.0%
AACTCTGGCGAATGATGAAG+TGG + chr8_4:48067775-48067794 Msa1329450:intron 45.0%
ATAGTTTCTGTGGCAAAGGC+AGG + chr8_4:48067960-48067979 Msa1329450:CDS 45.0%
TTTGCGTAAGGGAGAAACTG+CGG + chr8_4:48068004-48068023 Msa1329450:CDS 45.0%
AGAAACTGCGGAGAATACCA+AGG + chr8_4:48068016-48068035 Msa1329450:CDS 45.0%
GAAACTGCGGAGAATACCAA+GGG + chr8_4:48068017-48068036 Msa1329450:CDS 45.0%
TGCAAGAATGGTTAACTGCG+TGG + chr8_4:48068086-48068105 Msa1329450:intron 45.0%
CGAGAGCAACAATGATTCCT+AGG + chr8_4:48068552-48068571 Msa1329450:CDS 45.0%
! CATACAGGATGCCTTTTCTG+CGG - chr8_4:48068619-48068638 None:intergenic 45.0%
CAGATTTCAAAGTCCACGTG+TGG - chr8_4:48066457-48066476 None:intergenic 45.0%
!! CACACGTGGACTTTGAAATC+TGG + chr8_4:48066455-48066474 Msa1329450:five_prime_UTR 45.0%
TGCATCTTCTTCTTCCTTGC+TGG + chr8_4:48066604-48066623 Msa1329450:CDS 45.0%
ATGAACCGAAGAAACCAGCA+AGG - chr8_4:48066621-48066640 None:intergenic 45.0%
TAATGTGTCAGTGTCGTGTC+TGG + chr8_4:48066810-48066829 Msa1329450:intron 45.0%
! TGTCTGTGTCGGTGTTTCAT+AGG + chr8_4:48066839-48066858 Msa1329450:intron 45.0%
! TTGATGACTGCTGGAGAGTT+TGG + chr8_4:48066965-48066984 Msa1329450:intron 45.0%
ACAAAACCACGCACCTGAAA+AGG - chr8_4:48067013-48067032 None:intergenic 45.0%
AACTCTGGCGAATGATGAAG+TGG + chr8_4:48067775-48067794 Msa1329450:intron 45.0%
ATAGTTTCTGTGGCAAAGGC+AGG + chr8_4:48067960-48067979 Msa1329450:CDS 45.0%
TTTGCGTAAGGGAGAAACTG+CGG + chr8_4:48068004-48068023 Msa1329450:CDS 45.0%
AGAAACTGCGGAGAATACCA+AGG + chr8_4:48068016-48068035 Msa1329450:CDS 45.0%
GAAACTGCGGAGAATACCAA+GGG + chr8_4:48068017-48068036 Msa1329450:CDS 45.0%
TGCAAGAATGGTTAACTGCG+TGG + chr8_4:48068086-48068105 Msa1329450:intron 45.0%
CGAGAGCAACAATGATTCCT+AGG + chr8_4:48068552-48068571 Msa1329450:CDS 45.0%
! CATACAGGATGCCTTTTCTG+CGG - chr8_4:48068619-48068638 None:intergenic 45.0%
TCTGGTGTTCGTGTCTGTGT+CGG + chr8_4:48066828-48066847 Msa1329450:intron 50.0%
! ATGGATTGAGACCGAGAACG+AGG + chr8_4:48066909-48066928 Msa1329450:intron 50.0%
GAATCAAGCAGCCTCGTTCT+CGG - chr8_4:48066923-48066942 None:intergenic 50.0%
!!! TCGATTCCTTTTCAGGTGCG+TGG + chr8_4:48067004-48067023 Msa1329450:intron 50.0%
GATTCCTAGGAGTCATGGAG+AGG + chr8_4:48068565-48068584 Msa1329450:CDS 50.0%
GTTACCTCTCCATGACTCCT+AGG - chr8_4:48068572-48068591 None:intergenic 50.0%
! ATGCCTTTTCTGCGGAGAGA+GGG - chr8_4:48068611-48068630 None:intergenic 50.0%
TCTGGTGTTCGTGTCTGTGT+CGG + chr8_4:48066828-48066847 Msa1329450:intron 50.0%
! ATGGATTGAGACCGAGAACG+AGG + chr8_4:48066909-48066928 Msa1329450:intron 50.0%
GAATCAAGCAGCCTCGTTCT+CGG - chr8_4:48066923-48066942 None:intergenic 50.0%
!!! TCGATTCCTTTTCAGGTGCG+TGG + chr8_4:48067004-48067023 Msa1329450:intron 50.0%
GATTCCTAGGAGTCATGGAG+AGG + chr8_4:48068565-48068584 Msa1329450:CDS 50.0%
GTTACCTCTCCATGACTCCT+AGG - chr8_4:48068572-48068591 None:intergenic 50.0%
! ATGCCTTTTCTGCGGAGAGA+GGG - chr8_4:48068611-48068630 None:intergenic 50.0%
! GAGGCTGCTTGATTCGACGA+AGG + chr8_4:48066928-48066947 Msa1329450:intron 55.0%
GAGAGAGGGCGAGCTGAAAA+GGG - chr8_4:48068597-48068616 None:intergenic 55.0%
! GATGCCTTTTCTGCGGAGAG+AGG - chr8_4:48068612-48068631 None:intergenic 55.0%
! GAGGCTGCTTGATTCGACGA+AGG + chr8_4:48066928-48066947 Msa1329450:intron 55.0%
GAGAGAGGGCGAGCTGAAAA+GGG - chr8_4:48068597-48068616 None:intergenic 55.0%
! GATGCCTTTTCTGCGGAGAG+AGG - chr8_4:48068612-48068631 None:intergenic 55.0%
GGAGAGAGGGCGAGCTGAAA+AGG - chr8_4:48068598-48068617 None:intergenic 60.0%
TCGCCCTCTCTCCGCAGAAA+AGG + chr8_4:48068605-48068624 Msa1329450:CDS 60.0%
GGAGAGAGGGCGAGCTGAAA+AGG - chr8_4:48068598-48068617 None:intergenic 60.0%
TCGCCCTCTCTCCGCAGAAA+AGG + chr8_4:48068605-48068624 Msa1329450:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 48066413 48068661 48066413 ID=Msa1329450;Name=Msa1329450
chr8_4 mRNA 48066413 48068661 48066413 ID=Msa1329450-mRNA-1;Parent=Msa1329450;Name=Msa1329450-mRNA-1;_AED=0.11;_eAED=0.11;_QI=113|0.5|0.66|1|0.5|1|3|0|156
chr8_4 exon 48066413 48066660 48066413 ID=Msa1329450-mRNA-1:exon:13753;Parent=Msa1329450-mRNA-1
chr8_4 exon 48067894 48068051 48067894 ID=Msa1329450-mRNA-1:exon:13754;Parent=Msa1329450-mRNA-1
chr8_4 exon 48068484 48068661 48068484 ID=Msa1329450-mRNA-1:exon:13755;Parent=Msa1329450-mRNA-1
chr8_4 five_prime_UTR 48066413 48066525 48066413 ID=Msa1329450-mRNA-1:five_prime_utr;Parent=Msa1329450-mRNA-1
chr8_4 CDS 48066526 48066660 48066526 ID=Msa1329450-mRNA-1:cds;Parent=Msa1329450-mRNA-1
chr8_4 CDS 48067894 48068051 48067894 ID=Msa1329450-mRNA-1:cds;Parent=Msa1329450-mRNA-1
chr8_4 CDS 48068484 48068661 48068484 ID=Msa1329450-mRNA-1:cds;Parent=Msa1329450-mRNA-1
Gene Sequence

>Msa1329450

ATGAGAATCAAAACAGTTAAATCATCAAATTGGAGCTTAAGAACGAACAAGCTCACTTTCCCTTACGTTTTCCTCATATGCATCTTCTTCTTCCTTGCTGGTTTCTTCGGTTCATCTCTTTTCTCTCACTCTCAGGTTTTGAGCTGGAAGCCACGAGCTCTGTATTTTCCAAATTTTGCAACTGCTGAACAATGTGAAAACATAGTTTCTGTGGCAAAGGCAGGACTCAAACCATCATCATTGGCTTTGCGTAAGGGAGAAACTGCGGAGAATACCAAGGGAATTAGAACAAGCTCTGGTGTGTTTATTAGTGCTTCTGGGGATAAAACAAAGACTTTAGAGGTCATTGAGGAGAAAATTGCGAGAGCAACAATGATTCCTAGGAGTCATGGAGAGGTAACATCCCTTTTCAGCTCGCCCTCTCTCCGCAGAAAAGGCATCCTGTATGACCTTGACAATCTAATGTGCTAA

Protein sequence

>Msa1329450

MRIKTVKSSNWSLRTNKLTFPYVFLICIFFFLAGFFGSSLFSHSQVLSWKPRALYFPNFATAEQCENIVSVAKAGLKPSSLALRKGETAENTKGIRTSSGVFISASGDKTKTLEVIEEKIARATMIPRSHGEVTSLFSSPSLRRKGILYDLDNLMC*