AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0062350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062350 MtrunA17_Chr1g0162861 91.730 1318 75 10 47 1358 1 1290 0.0 2212
Msa0062350 MtrunA17_Chr4g0074931 26.901 513 313 14 750 1244 42 510 7.08e-25 111
Msa0062350 MtrunA17_Chr2g0317411 26.327 471 283 10 779 1234 82 503 8.85e-18 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0062350 AT1G20970.1 40.689 784 373 24 618 1345 605 1352 5.00e-111 382
Msa0062350 AT4G27500.2 27.273 473 284 14 780 1234 79 509 2.78e-17 87.4
Msa0062350 AT4G27500.1 26.596 470 291 12 780 1234 79 509 9.47e-17 86.3

Find 281 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTGTCTGGCTTATTTC+AGG 0.180645 1_2:-21715314 None:intergenic
TCTGATACAATTGTTGAAAA+TGG 0.255980 1_2:+21712117 Msa0062350:CDS
CTCGTAGCTGTTTCCTTTGA+AGG 0.262409 1_2:-21712471 None:intergenic
GCTTCTGCGACCAATTATTA+TGG 0.267077 1_2:+21716478 Msa0062350:three_prime_UTR
TAGTTATTGCTTCTGCCTTC+AGG 0.274660 1_2:-21713915 None:intergenic
TAATTTATTACCATAATAAT+TGG 0.277581 1_2:-21716488 None:intergenic
TTTGTTCTCACAGGTTCATT+AGG 0.278894 1_2:-21715428 None:intergenic
TCCTTTGTATTAACAATAAC+AGG 0.280926 1_2:-21715260 None:intergenic
AGCTGAAAGCCTGGCTAAAA+AGG 0.291793 1_2:+21713142 Msa0062350:CDS
GAAACTCCAGTTGATGTTAA+TGG 0.302515 1_2:+21712003 Msa0062350:CDS
GTGGGTTCTAATTGCAGTTC+TGG 0.310673 1_2:+21716153 Msa0062350:CDS
TCACCTTCATCAGCAGGTTC+TGG 0.311289 1_2:-21712303 None:intergenic
CGAAATTCGGGATGTTGAAT+TGG 0.312755 1_2:+21711936 Msa0062350:CDS
CATCAGTGGCAGATGCTTCT+TGG 0.313490 1_2:-21712938 None:intergenic
TGAAGTTTCAATTGATGTTT+CGG 0.315237 1_2:-21712763 None:intergenic
CGAAATTCGTGATGTTGAAT+TGG 0.315573 1_2:+21711558 Msa0062350:CDS
GGAAGAGGAGCAGATCTTAA+AGG 0.315964 1_2:+21715454 Msa0062350:CDS
CACTAGTTCCGTTGAAGGTT+CGG 0.320388 1_2:-21712571 None:intergenic
CCAACAAAGGGCTCTCTATA+AGG 0.325558 1_2:+21715592 Msa0062350:CDS
TTTGCTTCAATAGTTTGATT+TGG 0.337754 1_2:-21713614 None:intergenic
TGCATTGTTTAATCTATTCA+TGG 0.338109 1_2:-21713396 None:intergenic
AGATCTTCATTTCAAAGCTT+TGG 0.338307 1_2:+21716217 Msa0062350:CDS
TTCAGCTTCAACTGAAGTTT+CGG 0.341890 1_2:-21712727 None:intergenic
CGCCGTTTCAGTTGAAGGTT+CGG 0.344295 1_2:-21712535 None:intergenic
CCCTCCACTAGTTCCGTTGA+AGG 0.346377 1_2:-21712576 None:intergenic
GGCCATTCTATTGGTTGGTC+CGG 0.347271 1_2:+21713024 Msa0062350:CDS
AATCATTAGGTGTTTGCCTT+GGG 0.348423 1_2:+21716286 Msa0062350:three_prime_UTR
CCTTATAGAGAGCCCTTTGT+TGG 0.350120 1_2:-21715592 None:intergenic
TCACTTTCCTTCTTCTCAGC+TGG 0.352413 1_2:-21711607 None:intergenic
GTCTAATATTATTGCAAAAC+AGG 0.352653 1_2:+21713650 Msa0062350:CDS
TGAATCCATCTCTTGTCGTT+TGG 0.352770 1_2:-21713363 None:intergenic
TCCACTGCCATTTCTGTTGA+AGG 0.355840 1_2:-21712504 None:intergenic
TCCACCGCCGTTTCAGTTGA+AGG 0.359470 1_2:-21712540 None:intergenic
TCTGATTCGCCGACATCAAC+AGG 0.369872 1_2:-21712264 None:intergenic
ACATATAGAAGCAATTCTTT+TGG 0.372823 1_2:+21716342 Msa0062350:three_prime_UTR
GGTAAGGAAATTTCTGTTAA+CGG 0.377145 1_2:+21710968 Msa0062350:CDS
ATGAAGGGAAATAAGTTAGT+TGG 0.378549 1_2:-21710656 None:intergenic
TACAATTGTTGAAAATGGTT+TGG 0.379234 1_2:+21712122 Msa0062350:CDS
GAAGTTTCAGCTTCAATTGA+AGG 0.383520 1_2:-21712816 None:intergenic
TAATCAAGTGGATGAGGTTA+TGG 0.384901 1_2:+21713969 Msa0062350:CDS
TGTTGAAAATGGTTTGGATA+AGG 0.386706 1_2:+21712128 Msa0062350:CDS
CAAACTCCATTAACATCAAC+TGG 0.387744 1_2:-21712009 None:intergenic
GCCGACGTCGTCGGTGTTAT+CGG 0.390676 1_2:-21710876 None:intergenic
TGATAATCGCGATGTTGAAT+TGG 0.391001 1_2:+21711684 Msa0062350:CDS
GTTGAGTCTGTCTCTGATAA+TGG 0.391317 1_2:+21712156 Msa0062350:CDS
TTGGAAAGTGTAGCTGTTCC+TGG 0.396775 1_2:+21711631 Msa0062350:CDS
AAGATTTGTGAAAACGGTTC+GGG 0.399591 1_2:+21711157 Msa0062350:CDS
CAGTCTCCTCACTGTACTCC+TGG 0.401205 1_2:-21715099 None:intergenic
TGAAAATCGTGATGTTCAAT+TGG 0.402656 1_2:+21711816 Msa0062350:CDS
GGAGAAAAGAGCAAAGAAGA+AGG 0.403456 1_2:+21715892 Msa0062350:CDS
ATCAGTGGCAGATGCTTCTT+GGG 0.406247 1_2:-21712937 None:intergenic
GTCGAGTCTGTCTCTGATAA+TGG 0.406769 1_2:+21712195 Msa0062350:CDS
TCTTCCTCCTTTGTTCTCAC+AGG 0.410719 1_2:-21715437 None:intergenic
TCGACCGATTCACTCACTTC+AGG 0.414273 1_2:-21711973 None:intergenic
GAAGGTTCAGCTTCAATTGA+AGG 0.414841 1_2:-21712798 None:intergenic
AGCAGATCGAGTTTCTCGTT+GGG 0.417105 1_2:+21715379 Msa0062350:CDS
TGGTGAGGAGGCCATTCTAT+TGG 0.417655 1_2:+21713015 Msa0062350:CDS
ATACATGTAATAAATATGTA+AGG 0.422858 1_2:-21716319 None:intergenic
TTCAATGAAGGCAGGAATCA+TGG 0.423662 1_2:-21715165 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.425968 1_2:+21712161 Msa0062350:CDS
CTTATAGAGAGCCCTTTGTT+GGG 0.427096 1_2:-21715591 None:intergenic
TGAGAAGAAGGAAAGTGAAT+TGG 0.427148 1_2:+21711612 Msa0062350:CDS
CTTGTCAGAGTTTCAGAGCT+AGG 0.427351 1_2:-21715980 None:intergenic
GTCTGTCTCTGATAATGGTT+TGG 0.429116 1_2:+21712200 Msa0062350:CDS
GCAGATCTTAAAGGCTGAAC+AGG 0.431822 1_2:+21715463 Msa0062350:CDS
CAATCATTAGGTGTTTGCCT+TGG 0.433346 1_2:+21716285 Msa0062350:three_prime_UTR
GAAGATTTGTGAAAACGGTT+CGG 0.436024 1_2:+21711156 Msa0062350:CDS
TCACGAAAGCGAAAATCTTT+CGG 0.437644 1_2:+21711525 Msa0062350:CDS
TCTCTTCTCTTCTTCTCTGT+CGG 0.439442 1_2:+21710595 Msa0062350:CDS
GATAATGCTGTCAAAGTTGA+AGG 0.440799 1_2:+21712393 Msa0062350:CDS
TTCAGTTGAAGCTGAAACTT+CGG 0.441108 1_2:+21712734 Msa0062350:CDS
AGTTCAGAAAGGACTATTAC+CGG 0.442385 1_2:+21715069 Msa0062350:CDS
CTTCACCAGGATTAAGCGTT+CGG 0.443035 1_2:-21715136 None:intergenic
TGAAGGGAAATAAGTTAGTT+GGG 0.443366 1_2:-21710655 None:intergenic
TTCAATTGAAGCTGAAACTT+CGG 0.444181 1_2:+21712818 Msa0062350:CDS
TTCGATGCAAAGCAATCATT+AGG 0.446729 1_2:+21716273 Msa0062350:three_prime_UTR
TTCAGCTTCAATAGAGGTCT+CGG 0.449069 1_2:-21712847 None:intergenic
AGCTGAGCCTTCAACAGAAA+TGG 0.449661 1_2:+21712497 Msa0062350:CDS
AGGAGACTGCAAACTTTAGA+TGG 0.449667 1_2:+21715113 Msa0062350:CDS
TAAACAATGCAATTTCTGTC+GGG 0.451272 1_2:+21713408 Msa0062350:CDS
TTTGTAAGCTCTTTCAATGA+AGG 0.452055 1_2:-21715177 None:intergenic
TGAAAACGGTGGAGAATTGA+AGG 0.465384 1_2:+21711222 Msa0062350:CDS
TGTACCACAGCCTTGGAAGC+AGG 0.465437 1_2:-21715287 None:intergenic
AAGCGCAATGACAGCGGAGG+AGG 0.466090 1_2:+21710826 Msa0062350:CDS
GCCATTCTATTGGTTGGTCC+GGG 0.466811 1_2:+21713025 Msa0062350:CDS
AAGAGTGATCGTGAATTAGA+AGG 0.469982 1_2:+21711379 Msa0062350:CDS
TGTCGTGGATGCACAGGACA+TGG 0.474717 1_2:+21712983 Msa0062350:CDS
AGAAGAAGAAGAAGTGAAGG+TGG 0.475188 1_2:+21711294 Msa0062350:CDS
GAGAAAAGAGCAAAGAAGAA+GGG 0.479788 1_2:+21715893 Msa0062350:CDS
GTATCTACATTAACATCAAC+CGG 0.484110 1_2:-21712057 None:intergenic
TCAAGTTACAGACTTTGAAA+AGG 0.489986 1_2:+21714034 Msa0062350:CDS
CACAGAGCATTGTAATGGTA+AGG 0.495770 1_2:+21710952 Msa0062350:CDS
CGATGTTGTTGTTGCTGACG+TGG 0.495959 1_2:+21711354 Msa0062350:CDS
CAAAGCTGAAGGAAAAGAAA+AGG 0.496256 1_2:+21715507 Msa0062350:CDS
AAATGGTTTGGATAAGGTAC+CGG 0.496598 1_2:+21712134 Msa0062350:CDS
GGAGCGCTTATGTATTGATC+AGG 0.496628 1_2:+21714909 Msa0062350:CDS
AGAAGAAGAAGTGAAGGTGG+AGG 0.497120 1_2:+21711297 Msa0062350:CDS
GATGGCCGAACGCTTAATCC+TGG 0.497200 1_2:+21715131 Msa0062350:CDS
TTAAACAATGCAATTTCTGT+CGG 0.499085 1_2:+21713407 Msa0062350:CDS
GAAGTTTGAGCTTCAACTGA+AGG 0.499445 1_2:-21712870 None:intergenic
GCTTTCGTGATCTTTAGATT+CGG 0.500492 1_2:-21711512 None:intergenic
CGAAATTCGAGCTGAAAGCC+TGG 0.501002 1_2:+21713133 Msa0062350:CDS
ACAAGAAGAGAGAGCTGCTA+GGG 0.501119 1_2:+21713328 Msa0062350:CDS
CTCTGATAATGGTTTGGCAG+AGG 0.502587 1_2:+21712206 Msa0062350:CDS
TAAGCTCTTTCAATGAAGGC+AGG 0.506060 1_2:-21715173 None:intergenic
AGTTGAACCAGCTGAGAAGA+AGG 0.506135 1_2:+21711600 Msa0062350:CDS
TCATTAGGTGTTTGCCTTGG+GGG 0.506788 1_2:+21716288 Msa0062350:three_prime_UTR
AGAAGGTAATCAAGTGGATG+AGG 0.511050 1_2:+21713963 Msa0062350:CDS
CACCGATGTCGTGGATGCAC+AGG 0.512779 1_2:+21712977 Msa0062350:CDS
AACGGTTGATGTCGTTGAGC+GGG 0.518462 1_2:+21711129 Msa0062350:CDS
GAATTAGAAGGTGTTGAAAA+CGG 0.518791 1_2:+21711391 Msa0062350:CDS
TACTCCACCTTTACCGTTAG+CGG 0.521641 1_2:-21711044 None:intergenic
TCAATGAGACTGCAAGAACT+AGG 0.522673 1_2:+21714862 Msa0062350:CDS
CAAATCCAAACGACAAGAGA+TGG 0.523125 1_2:+21713358 Msa0062350:CDS
AAAGGATGAACCTGCTTCCA+AGG 0.524649 1_2:+21715277 Msa0062350:CDS
TGCCGAAAAGGCCCAACAAA+GGG 0.525398 1_2:+21715580 Msa0062350:CDS
TAATGGTTTGGCAGAGGTTG+AGG 0.525866 1_2:+21712212 Msa0062350:CDS
ACCACGGTTGCGAATAGCCA+TGG 0.526287 1_2:-21716104 None:intergenic
TGTGAGAACAAAGGAGGAAG+AGG 0.526843 1_2:+21715439 Msa0062350:CDS
GGGAAATAAGTTAGTTGGGT+GGG 0.527047 1_2:-21710651 None:intergenic
GAGGAGGCCATTCTATTGGT+TGG 0.527307 1_2:+21713019 Msa0062350:CDS
GTAATAAATTATTGTGATTG+TGG 0.527555 1_2:+21716500 Msa0062350:three_prime_UTR
GAATTTGTGATTGTTGAAAA+CGG 0.528063 1_2:+21711208 Msa0062350:CDS
ATCATGGGCGGCTCTTCACC+AGG 0.529500 1_2:-21715149 None:intergenic
GGCGCCGTCGAAGGCGGTGA+AGG 0.530333 1_2:+21710896 Msa0062350:CDS
CTGTACTCCTGGTGTTGCAC+CGG 0.531472 1_2:-21715088 None:intergenic
TAAATTATTGTGATTGTGGT+GGG 0.531904 1_2:+21716504 Msa0062350:three_prime_UTR
GTTGAATTCGTCTCTTACCA+CGG 0.532422 1_2:-21716120 None:intergenic
TTAGAGGCAGAGTTTCATGC+TGG 0.534107 1_2:-21713569 None:intergenic
GACGACGTCGGCGCCGTCGA+AGG 0.536151 1_2:+21710887 Msa0062350:CDS
TCTGCTGACTTCTTCTCTGA+AGG 0.536447 1_2:-21715362 None:intergenic
TAAAGGTGGAGTAGCGGTAG+AGG 0.536539 1_2:+21711054 Msa0062350:CDS
GGATGAAGTTGAACCTTCAA+AGG 0.536650 1_2:+21712458 Msa0062350:CDS
ACTATTACCGGTGCAACACC+AGG 0.537211 1_2:+21715081 Msa0062350:CDS
AGGAGCACAGGGGAAGAAAG+AGG 0.538909 1_2:+21714882 Msa0062350:CDS
GACGAATTCAACCATGGATG+TGG 0.539438 1_2:+21716131 Msa0062350:CDS
AGCCGAACCTTCAACTGAAA+CGG 0.539734 1_2:+21712533 Msa0062350:CDS
TTCTACGGATGCGGTGGAGG+TGG 0.540207 1_2:+21711465 Msa0062350:CDS
ACCTTCAACTGAAACGGCGG+TGG 0.542771 1_2:+21712539 Msa0062350:CDS
TTGTGATAATGCAGATGAGA+AGG 0.542927 1_2:+21712029 Msa0062350:CDS
CAGCAGATCGAGTTTCTCGT+TGG 0.543874 1_2:+21715378 Msa0062350:CDS
GAATTGGAAAGTAAAGTTGA+TGG 0.544173 1_2:+21711574 Msa0062350:CDS
TGATTCTACGGATGCGGTGG+AGG 0.544593 1_2:+21711462 Msa0062350:CDS
AAGAAGAAATACGAGGAAGA+AGG 0.546407 1_2:+21713946 Msa0062350:CDS
TAATGGTTTGGAGAAGGTAC+AGG 0.547093 1_2:+21712173 Msa0062350:CDS
TGCTGATGACACTCGTCAAG+AGG 0.552097 1_2:+21714005 Msa0062350:CDS
ATTTCTGTTAACGGCAATGT+CGG 0.552571 1_2:+21710977 Msa0062350:CDS
TGAAACTCTGACAAGAACTC+TGG 0.552572 1_2:+21715988 Msa0062350:CDS
CTCACCTTCACCGCCTTCGA+CGG 0.552658 1_2:-21710900 None:intergenic
ACCCGGACCAACCAATAGAA+TGG 0.552856 1_2:-21713026 None:intergenic
ACTGCAAGAACTAGGAGCAC+AGG 0.554158 1_2:+21714870 Msa0062350:CDS
AAGCATTGAAGAGCAAACTA+AGG 0.554579 1_2:+21713701 Msa0062350:CDS
GAAAAGGCAATTGCATGAGA+AGG 0.554771 1_2:+21714050 Msa0062350:CDS
CTCTGATAATGGTTTGGAGA+AGG 0.557027 1_2:+21712167 Msa0062350:CDS
TTATCAGAGACAGACTCAAC+CGG 0.558273 1_2:-21712153 None:intergenic
TTAACAATAACAGGTTCTGT+TGG 0.558685 1_2:-21715251 None:intergenic
ATCATTAGGTGTTTGCCTTG+GGG 0.559846 1_2:+21716287 Msa0062350:three_prime_UTR
TTCGACGGCGCCGACGTCGT+CGG 0.560203 1_2:-21710885 None:intergenic
GAGTGAAGCCGAACCTTCAA+CGG 0.561675 1_2:+21712563 Msa0062350:CDS
CTTGATTATACTCTTTACGA+AGG 0.561786 1_2:-21713289 None:intergenic
GAAGAGAAGATTTGTGAAAA+CGG 0.561949 1_2:+21711151 Msa0062350:CDS
GCAGATCGAGTTTCTCGTTG+GGG 0.561989 1_2:+21715380 Msa0062350:CDS
AAGATCACAGAGCATTGTAA+TGG 0.562627 1_2:+21710947 Msa0062350:CDS
AGCATCTGCCACTGATGCTG+TGG 0.563886 1_2:+21712944 Msa0062350:CDS
TGCTGATTCTACGGATGCGG+TGG 0.564790 1_2:+21711459 Msa0062350:CDS
ACATGGGCTCTGAGGTGGTG+AGG 0.566686 1_2:+21713000 Msa0062350:CDS
ACCTTCAACGGAACTAGTGG+AGG 0.567327 1_2:+21712575 Msa0062350:CDS
AGACATTAAAGAGGAGAGTG+AGG 0.569567 1_2:+21712359 Msa0062350:CDS
AAACAATGCAATTTCTGTCG+GGG 0.569837 1_2:+21713409 Msa0062350:CDS
GAAGCTGATTCACTCACTCC+AGG 0.570410 1_2:-21711649 None:intergenic
GAATTCAACCATGGATGTGG+TGG 0.570422 1_2:+21716134 Msa0062350:CDS
TCAATGAAGGCAGGAATCAT+GGG 0.571166 1_2:-21715164 None:intergenic
TTGATTATACTCTTTACGAA+GGG 0.572186 1_2:-21713288 None:intergenic
GTTGACGCCGCTAACGGTAA+AGG 0.572603 1_2:+21711037 Msa0062350:CDS
TGAAGAAGTTGCTGATTCTA+CGG 0.573748 1_2:+21711450 Msa0062350:CDS
GGAGGTGGTTGATTCTGATA+CGG 0.576314 1_2:+21711480 Msa0062350:CDS
ACCTGTTATTGTTAATACAA+AGG 0.576749 1_2:+21715259 Msa0062350:CDS
TGAACCTGCTTCCAAGGCTG+TGG 0.577224 1_2:+21715283 Msa0062350:CDS
TGGGCTCTGAGGTGGTGAGG+AGG 0.578182 1_2:+21713003 Msa0062350:CDS
TTCAGTTGAAACTGAGACTG+CGG 0.578726 1_2:+21712698 Msa0062350:CDS
ATAAATTATTGTGATTGTGG+TGG 0.579033 1_2:+21716503 Msa0062350:three_prime_UTR
GCAGTCTCAGTTTCAACTGA+AGG 0.579813 1_2:-21712696 None:intergenic
CTGCAAGAACTAGGAGCACA+GGG 0.581459 1_2:+21714871 Msa0062350:CDS
TCAATTCACAAAACAAAGCA+AGG 0.582239 1_2:+21716069 Msa0062350:CDS
TTGTCATCATCATCGTATCT+CGG 0.583706 1_2:-21713050 None:intergenic
ACTTTGACAGCATTATCTGA+AGG 0.585040 1_2:-21712387 None:intergenic
GGAAATTGAGAAAGCTAAGG+AGG 0.585444 1_2:+21715535 Msa0062350:CDS
CATCATCGTATCTCGGAACC+CGG 0.585579 1_2:-21713043 None:intergenic
TGCAGATGAGAAGGAAACTC+CGG 0.585869 1_2:+21712038 Msa0062350:CDS
GAAGAATGATGAGTTCAGAA+AGG 0.586168 1_2:+21715058 Msa0062350:CDS
GGAAGAAGAAGCAAAGCTGA+AGG 0.586806 1_2:+21715496 Msa0062350:CDS
GCCTTCAACAGAAATGGCAG+TGG 0.586817 1_2:+21712503 Msa0062350:CDS
GAAAGCGAAAATCTTTCGGA+TGG 0.587905 1_2:+21711529 Msa0062350:CDS
GGCTGAACAGGCGAGGAAGA+CGG 0.589707 1_2:+21715475 Msa0062350:CDS
GACGTCGGCGCCGTCGAAGG+CGG 0.589960 1_2:+21710890 Msa0062350:CDS
TGCATCTGCCACCGATGTCG+TGG 0.590159 1_2:+21712968 Msa0062350:CDS
TGAAGGTTCAGCTTCAATAG+AGG 0.590769 1_2:-21712853 None:intergenic
AACTTCTCTATCGACAACAT+TGG 0.592698 1_2:-21712670 None:intergenic
GGATCAACACGGTGTCGTTG+AGG 0.593024 1_2:+21711318 Msa0062350:CDS
ACCTCAGACGTAACAACAGA+AGG 0.593177 1_2:-21712333 None:intergenic
ACAGGGGAAGAAAGAGGACG+TGG 0.593488 1_2:+21714888 Msa0062350:CDS
CGAACCTTCAACGGAACTAG+TGG 0.593666 1_2:+21712572 Msa0062350:CDS
GTTACCGTTGACGCCGCTAA+CGG 0.594903 1_2:+21711031 Msa0062350:CDS
GCTTTGAAATGAAGATCTCA+AGG 0.595326 1_2:-21716212 None:intergenic
TGAGGTGAGAGACATTAAAG+AGG 0.596413 1_2:+21712350 Msa0062350:CDS
TACATGTAATAAATATGTAA+GGG 0.597019 1_2:-21716318 None:intergenic
ATCAGCAACTTCTTCAACAG+CGG 0.597246 1_2:-21711443 None:intergenic
CCACGGTTGCGAATAGCCAT+GGG 0.597835 1_2:-21716103 None:intergenic
ATTAGAACCCACCACATCCA+TGG 0.597877 1_2:-21716142 None:intergenic
GGACGAGTCTGATGAAGAGA+AGG 0.598518 1_2:+21715403 Msa0062350:CDS
GTCGTGGATGCACAGGACAT+GGG 0.598942 1_2:+21712984 Msa0062350:CDS
GAAGCTCAAACTTCAGCTGA+AGG 0.599070 1_2:+21712879 Msa0062350:CDS
TACAAGAAGAGAGAGCTGCT+AGG 0.599500 1_2:+21713327 Msa0062350:CDS
CTGTGCATCCACGACATCGG+TGG 0.599757 1_2:-21712976 None:intergenic
TGATCCTGAAGTGAGTGAAT+CGG 0.600354 1_2:+21711969 Msa0062350:CDS
TTCAGGAAGCGCAATGACAG+CGG 0.600797 1_2:+21710820 Msa0062350:intron
CGAGGAAGAAGGTAATCAAG+TGG 0.601038 1_2:+21713957 Msa0062350:CDS
AGTTGCTGATTCTACGGATG+CGG 0.604860 1_2:+21711456 Msa0062350:CDS
ACCTTCTGTTGTTACGTCTG+AGG 0.605683 1_2:+21712332 Msa0062350:CDS
TTCTAACGGTGAAACGACAA+CGG 0.609310 1_2:+21711111 Msa0062350:CDS
TGAGGTGAGTGAATGCATCA+AGG 0.610932 1_2:+21712230 Msa0062350:CDS
TACTCAAAATGATTTAGAGA+AGG 0.612379 1_2:+21712077 Msa0062350:CDS
ATGCCGAAAAGGCCCAACAA+AGG 0.614179 1_2:+21715579 Msa0062350:CDS
ACATGCTCTTCAACAAGTAG+AGG 0.615781 1_2:+21713091 Msa0062350:CDS
TGCACAGGACATGGGCTCTG+AGG 0.616154 1_2:+21712992 Msa0062350:CDS
AGTTACTACTGAAGATGCTG+TGG 0.616914 1_2:+21715928 Msa0062350:CDS
CAGATCGAGTTTCTCGTTGG+GGG 0.617393 1_2:+21715381 Msa0062350:CDS
GTTATTTCCCATATAAAACA+AGG 0.618146 1_2:-21716185 None:intergenic
TGTCGGGGATATAGATAGCA+AGG 0.619863 1_2:+21713424 Msa0062350:CDS
GTCCTGTGCATCCACGACAT+CGG 0.620547 1_2:-21712979 None:intergenic
AGATGCATCCACAGCATCAG+TGG 0.621066 1_2:-21712952 None:intergenic
ACACCAGAACCTGCTGATGA+AGG 0.621455 1_2:+21712300 Msa0062350:CDS
TAGCAACGAATCTGAAGTGA+CGG 0.622394 1_2:+21711081 Msa0062350:CDS
AAATCTGCAACATCAACAGA+AGG 0.624188 1_2:-21712642 None:intergenic
AAGCTAAGGAGGCACTGCAA+AGG 0.626684 1_2:+21715546 Msa0062350:CDS
AGAGGAAATTGAGAAAGCTA+AGG 0.627172 1_2:+21715532 Msa0062350:CDS
AACGATCGGATCTGAAAGAA+CGG 0.627370 1_2:-21711011 None:intergenic
GTGACGGTTATGAATTCTAA+CGG 0.628599 1_2:+21711097 Msa0062350:CDS
TTTACCGTTAGCGGCGTCAA+CGG 0.629253 1_2:-21711035 None:intergenic
CCCATGGCTATTCGCAACCG+TGG 0.629628 1_2:+21716103 Msa0062350:CDS
GCGGCGTCAACGGTAACGAT+CGG 0.631102 1_2:-21711025 None:intergenic
CAACGGTTGATGTCGTTGAG+CGG 0.634074 1_2:+21711128 Msa0062350:CDS
GCTTAGAAGTAATCTCCTGA+AGG 0.634976 1_2:+21713900 Msa0062350:CDS
AGATCGAGTTTCTCGTTGGG+GGG 0.635906 1_2:+21715382 Msa0062350:CDS
AGGAAGCGCAATGACAGCGG+AGG 0.636017 1_2:+21710823 Msa0062350:intron
TTTGTGATTGTTGAAAACGG+TGG 0.637026 1_2:+21711211 Msa0062350:CDS
GGTGGTTGATTCTGATACGG+TGG 0.638023 1_2:+21711483 Msa0062350:CDS
TCTTAAAGGCTGAACAGGCG+AGG 0.640573 1_2:+21715468 Msa0062350:CDS
AGAATTGAAGGAATGTGCGG+TGG 0.642858 1_2:+21711234 Msa0062350:CDS
GAAGGAAAAGAAAAGGCTAG+AGG 0.644112 1_2:+21715514 Msa0062350:CDS
AGGGAAATAAGTTAGTTGGG+TGG 0.646523 1_2:-21710652 None:intergenic
AATGTGATTCCTGTTGATGT+CGG 0.646932 1_2:+21712255 Msa0062350:CDS
ATTGTTTAATCTATTCATGG+TGG 0.647633 1_2:-21713393 None:intergenic
CAAGGTAAAAGCTTTACCCA+TGG 0.652268 1_2:+21716087 Msa0062350:CDS
TGTATCAGAGACAGACTCAA+CGG 0.654537 1_2:-21712103 None:intergenic
AAGTGGATGAGGTTATGGCT+CGG 0.657227 1_2:+21713974 Msa0062350:CDS
AATTCAACCATGGATGTGGT+GGG 0.658178 1_2:+21716135 Msa0062350:CDS
TGAACCTGTGAGAACAAAGG+AGG 0.664380 1_2:+21715433 Msa0062350:CDS
GACGCCGCTAACGGTAAAGG+TGG 0.666548 1_2:+21711040 Msa0062350:CDS
TAATGAACCTGTGAGAACAA+AGG 0.667584 1_2:+21715430 Msa0062350:CDS
TCCGATAACACCGACGACGT+CGG 0.667668 1_2:+21710875 Msa0062350:CDS
AAACGGAGTTAAAGAGATCG+AGG 0.668902 1_2:+21711408 Msa0062350:CDS
CGAACCTTCAACTGAAACGG+CGG 0.674110 1_2:+21712536 Msa0062350:CDS
GGATGTTGAATTGGAAACCG+TGG 0.674322 1_2:+21711945 Msa0062350:CDS
TCAGATTGAGAAACCAGTTG+AGG 0.678073 1_2:+21716021 Msa0062350:CDS
GAACAATGTAGTGCAGAGTG+AGG 0.684611 1_2:+21712614 Msa0062350:CDS
CCTTCAACGGAACTAGTGGA+GGG 0.687931 1_2:+21712576 Msa0062350:CDS
GTGAAGGTGGAGGATCAACA+CGG 0.692928 1_2:+21711307 Msa0062350:CDS
ACTCACTTCAGGATCAACCA+CGG 0.693405 1_2:-21711962 None:intergenic
ATGAAGGCAGGAATCATGGG+CGG 0.695047 1_2:-21715161 None:intergenic
AGCAGCAAAGAAGAAATACG+AGG 0.695748 1_2:+21713939 Msa0062350:CDS
TAACGGTAAAGGTGGAGTAG+CGG 0.700879 1_2:+21711048 Msa0062350:CDS
ACAGGACATGGGCTCTGAGG+TGG 0.700930 1_2:+21712995 Msa0062350:CDS
GTAAGAGACGAATTCAACCA+TGG 0.703137 1_2:+21716125 Msa0062350:CDS
CGGAGTTAAAGAGATCGAGG+AGG 0.714006 1_2:+21711411 Msa0062350:CDS
TTGATGTCGGCGAATCAGAG+AGG 0.714665 1_2:+21712268 Msa0062350:CDS
AAACTATTGAAGCAAAATCG+CGG 0.718300 1_2:+21713621 Msa0062350:CDS
TTTCAGCTCGAATTTCGTCG+CGG 0.729931 1_2:-21713127 None:intergenic
TGGAGAATTGAAGGAATGTG+CGG 0.744091 1_2:+21711231 Msa0062350:CDS
GCAACACCAGGAGTACAGTG+AGG 0.757234 1_2:+21715093 Msa0062350:CDS
TGCAAGAACTAGGAGCACAG+GGG 0.777871 1_2:+21714872 Msa0062350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAAAAA+AGG - chr1_2:21714600-21714619 None:intergenic 0.0%
!! TTAAACTAAAATTCATTTAT+TGG + chr1_2:21715822-21715841 Msa0062350:intron 10.0%
!! TAATTTATTACCATAATAAT+TGG - chr1_2:21716491-21716510 None:intergenic 10.0%
!! ATAAAAAATAAAAAAGGTTG+AGG - chr1_2:21714594-21714613 None:intergenic 15.0%
!! TACATGTAATAAATATGTAA+GGG - chr1_2:21716321-21716340 None:intergenic 15.0%
!! ATACATGTAATAAATATGTA+AGG - chr1_2:21716322-21716341 None:intergenic 15.0%
!! AAAATTGAGAAAATTGCTTA+CGG - chr1_2:21710710-21710729 None:intergenic 20.0%
!!! TAGAATGATATTAGTTTGAT+TGG + chr1_2:21713186-21713205 Msa0062350:intron 20.0%
!!! TTTGAATGATTAATTTGTTC+AGG + chr1_2:21713265-21713284 Msa0062350:intron 20.0%
!! AGTAGTTAATTCCATTAATT+CGG - chr1_2:21713759-21713778 None:intergenic 20.0%
!! AAAAAAGGAATGAAATAGAT+AGG - chr1_2:21714090-21714109 None:intergenic 20.0%
!!! AATCTATTCTTTGATTGTTT+TGG + chr1_2:21714177-21714196 Msa0062350:intron 20.0%
!! TTAAATTCTTTAATCCACAA+AGG - chr1_2:21714463-21714482 None:intergenic 20.0%
!! GATTAAAGAATTTAATGCTT+AGG + chr1_2:21714468-21714487 Msa0062350:intron 20.0%
!!! TTAATTTCTTTTGTTGTTCA+GGG - chr1_2:21715229-21715248 None:intergenic 20.0%
!! TTGAATCACATTATAACAAA+CGG - chr1_2:21715720-21715739 None:intergenic 20.0%
!! CAGTATAAAAATAGTTATCA+TGG - chr1_2:21715781-21715800 None:intergenic 20.0%
!! TAGAAGCAAAAAAATTGTAA+AGG - chr1_2:21716370-21716389 None:intergenic 20.0%
!!! ATTTTTTTGCTTCTAGTTTT+TGG + chr1_2:21716375-21716394 Msa0062350:three_prime_UTR 20.0%
!! GTAATAAATTATTGTGATTG+TGG + chr1_2:21716500-21716519 Msa0062350:three_prime_UTR 20.0%
! GAATTTGTGATTGTTGAAAA+CGG + chr1_2:21711208-21711227 Msa0062350:CDS 25.0%
! TACTCAAAATGATTTAGAGA+AGG + chr1_2:21712077-21712096 Msa0062350:CDS 25.0%
! TCTGATACAATTGTTGAAAA+TGG + chr1_2:21712117-21712136 Msa0062350:CDS 25.0%
! TACAATTGTTGAAAATGGTT+TGG + chr1_2:21712122-21712141 Msa0062350:CDS 25.0%
! TGAAGTTTCAATTGATGTTT+CGG - chr1_2:21712766-21712785 None:intergenic 25.0%
! TTGATTATACTCTTTACGAA+GGG - chr1_2:21713291-21713310 None:intergenic 25.0%
! ATTGTTTAATCTATTCATGG+TGG - chr1_2:21713396-21713415 None:intergenic 25.0%
! TGCATTGTTTAATCTATTCA+TGG - chr1_2:21713399-21713418 None:intergenic 25.0%
! TTAAACAATGCAATTTCTGT+CGG + chr1_2:21713407-21713426 Msa0062350:CDS 25.0%
!! TTATTTTCAGATTCGAAACA+TGG + chr1_2:21713536-21713555 Msa0062350:intron 25.0%
!!! AATTGCTTTTCTTCTTTTAG+AGG - chr1_2:21713588-21713607 None:intergenic 25.0%
! TTTGCTTCAATAGTTTGATT+TGG - chr1_2:21713617-21713636 None:intergenic 25.0%
! GTCTAATATTATTGCAAAAC+AGG + chr1_2:21713650-21713669 Msa0062350:CDS 25.0%
! CATTATATTTCCCGAATTAA+TGG + chr1_2:21713745-21713764 Msa0062350:intron 25.0%
! GTAGTTAATTCCATTAATTC+GGG - chr1_2:21713758-21713777 None:intergenic 25.0%
!!! TACATGGTTTTAATTTCCTT+AGG - chr1_2:21714341-21714360 None:intergenic 25.0%
! AAAATATTATCTGCTGAACT+AGG + chr1_2:21714631-21714650 Msa0062350:intron 25.0%
!! TGTACAGAGCAAATATTTTT+GGG + chr1_2:21714825-21714844 Msa0062350:intron 25.0%
!! TACTCGTTTCAAGTATAAAA+AGG - chr1_2:21714939-21714958 None:intergenic 25.0%
!!! TAATTTCTTTTGTTGTTCAG+GGG - chr1_2:21715228-21715247 None:intergenic 25.0%
!!! GTTAATTTCTTTTGTTGTTC+AGG - chr1_2:21715230-21715249 None:intergenic 25.0%
! ACCTGTTATTGTTAATACAA+AGG + chr1_2:21715259-21715278 Msa0062350:CDS 25.0%
! TCCTTTGTATTAACAATAAC+AGG - chr1_2:21715263-21715282 None:intergenic 25.0%
! GGTCAATTATCACATTTAAT+GGG - chr1_2:21715760-21715779 None:intergenic 25.0%
! TGGTCAATTATCACATTTAA+TGG - chr1_2:21715761-21715780 None:intergenic 25.0%
!! GTTATTTCCCATATAAAACA+AGG - chr1_2:21716188-21716207 None:intergenic 25.0%
!! ACATATAGAAGCAATTCTTT+TGG + chr1_2:21716342-21716361 Msa0062350:three_prime_UTR 25.0%
! ATAAATTATTGTGATTGTGG+TGG + chr1_2:21716503-21716522 Msa0062350:three_prime_UTR 25.0%
TGAAGGGAAATAAGTTAGTT+GGG - chr1_2:21710658-21710677 None:intergenic 30.0%
ATGAAGGGAAATAAGTTAGT+TGG - chr1_2:21710659-21710678 None:intergenic 30.0%
AGAAAAAAGAGAGAGATGAA+GGG - chr1_2:21710674-21710693 None:intergenic 30.0%
AAGAAAAAAGAGAGAGATGA+AGG - chr1_2:21710675-21710694 None:intergenic 30.0%
!!! CAATTTCTTGAGCTTTTTTC+AGG + chr1_2:21710803-21710822 Msa0062350:intron 30.0%
GGTAAGGAAATTTCTGTTAA+CGG + chr1_2:21710968-21710987 Msa0062350:CDS 30.0%
GAAGAGAAGATTTGTGAAAA+CGG + chr1_2:21711151-21711170 Msa0062350:CDS 30.0%
!! GAATTAGAAGGTGTTGAAAA+CGG + chr1_2:21711391-21711410 Msa0062350:CDS 30.0%
GAATTGGAAAGTAAAGTTGA+TGG + chr1_2:21711574-21711593 Msa0062350:CDS 30.0%
TGAAAATCGTGATGTTCAAT+TGG + chr1_2:21711816-21711835 Msa0062350:CDS 30.0%
! AGCTGAGAAAAACGAAATTT+TGG + chr1_2:21711870-21711889 Msa0062350:CDS 30.0%
GTATCTACATTAACATCAAC+CGG - chr1_2:21712060-21712079 None:intergenic 30.0%
! TGTTGAAAATGGTTTGGATA+AGG + chr1_2:21712128-21712147 Msa0062350:CDS 30.0%
AGATTAAAAACGATGCAGTT+GGG + chr1_2:21712436-21712455 Msa0062350:CDS 30.0%
TTCAATTGAAGCTGAAACTT+CGG + chr1_2:21712818-21712837 Msa0062350:CDS 30.0%
CTTGATTATACTCTTTACGA+AGG - chr1_2:21713292-21713311 None:intergenic 30.0%
TAAACAATGCAATTTCTGTC+GGG + chr1_2:21713408-21713427 Msa0062350:CDS 30.0%
CAAATCGTGATAAATATCTC+TGG - chr1_2:21713470-21713489 None:intergenic 30.0%
GAGATGTTGATACAACAAAA+AGG - chr1_2:21713504-21713523 None:intergenic 30.0%
AAACTATTGAAGCAAAATCG+CGG + chr1_2:21713621-21713640 Msa0062350:CDS 30.0%
! TCAAGTTACAGACTTTGAAA+AGG + chr1_2:21714034-21714053 Msa0062350:CDS 30.0%
TTGATACTAATGCCAAATCT+AGG + chr1_2:21714258-21714277 Msa0062350:intron 30.0%
TGATACTAATGCCAAATCTA+GGG + chr1_2:21714259-21714278 Msa0062350:intron 30.0%
AGTATTACTTCATGAGTACA+TGG - chr1_2:21714357-21714376 None:intergenic 30.0%
CTGAAAATGAGATATCCATT+GGG - chr1_2:21714503-21714522 None:intergenic 30.0%
TCAGGATTACTGTATTATCT+AGG + chr1_2:21714519-21714538 Msa0062350:intron 30.0%
ACAGTATGGTAAACAAAACT+AGG - chr1_2:21714808-21714827 None:intergenic 30.0%
AATATTTGCTCTGTACAGTA+TGG - chr1_2:21714822-21714841 None:intergenic 30.0%
! CTGTACAGAGCAAATATTTT+TGG + chr1_2:21714824-21714843 Msa0062350:intron 30.0%
TTTGTAAGCTCTTTCAATGA+AGG - chr1_2:21715180-21715199 None:intergenic 30.0%
TTAACAATAACAGGTTCTGT+TGG - chr1_2:21715254-21715273 None:intergenic 30.0%
!!! CTTTGTTTTGTGAATTGAGA+TGG - chr1_2:21716067-21716086 None:intergenic 30.0%
TCAATTCACAAAACAAAGCA+AGG + chr1_2:21716069-21716088 Msa0062350:CDS 30.0%
!!! TATTGCTGCCTTGTTTTATA+TGG + chr1_2:21716177-21716196 Msa0062350:CDS 30.0%
!!! ATTGCTGCCTTGTTTTATAT+GGG + chr1_2:21716178-21716197 Msa0062350:CDS 30.0%
AGATCTTCATTTCAAAGCTT+TGG + chr1_2:21716217-21716236 Msa0062350:CDS 30.0%
!!! TTTCAAAGCTTTGGTTTTTG+AGG + chr1_2:21716226-21716245 Msa0062350:CDS 30.0%
!!! CGAAGCAAGTTTTTTAACTT+TGG - chr1_2:21716257-21716276 None:intergenic 30.0%
!! GTTTCTGATGTGATTTTAAC+TGG + chr1_2:21716449-21716468 Msa0062350:three_prime_UTR 30.0%
! AAGAAATTGAAAAGCGCGTT+TGG - chr1_2:21710792-21710811 None:intergenic 35.0%
!! AAGATCACAGAGCATTGTAA+TGG + chr1_2:21710947-21710966 Msa0062350:CDS 35.0%
ATTTCTGTTAACGGCAATGT+CGG + chr1_2:21710977-21710996 Msa0062350:CDS 35.0%
GTGACGGTTATGAATTCTAA+CGG + chr1_2:21711097-21711116 Msa0062350:CDS 35.0%
GAAGATTTGTGAAAACGGTT+CGG + chr1_2:21711156-21711175 Msa0062350:CDS 35.0%
AAGATTTGTGAAAACGGTTC+GGG + chr1_2:21711157-21711176 Msa0062350:CDS 35.0%
TTTGTGATTGTTGAAAACGG+TGG + chr1_2:21711211-21711230 Msa0062350:CDS 35.0%
AGAAGAAGAAGAAGAAGTGA+AGG + chr1_2:21711291-21711310 Msa0062350:CDS 35.0%
AAGAGTGATCGTGAATTAGA+AGG + chr1_2:21711379-21711398 Msa0062350:CDS 35.0%
!! TGAAGAAGTTGCTGATTCTA+CGG + chr1_2:21711450-21711469 Msa0062350:CDS 35.0%
GCTTTCGTGATCTTTAGATT+CGG - chr1_2:21711515-21711534 None:intergenic 35.0%
TCACGAAAGCGAAAATCTTT+CGG + chr1_2:21711525-21711544 Msa0062350:CDS 35.0%
CGAAATTCGTGATGTTGAAT+TGG + chr1_2:21711558-21711577 Msa0062350:CDS 35.0%
TGAGAAGAAGGAAAGTGAAT+TGG + chr1_2:21711612-21711631 Msa0062350:CDS 35.0%
TGATAATCGCGATGTTGAAT+TGG + chr1_2:21711684-21711703 Msa0062350:CDS 35.0%
CAGCTGAGAAAAACGAAATT+CGG + chr1_2:21711869-21711888 Msa0062350:CDS 35.0%
AGCTGAGAAAAACGAAATTC+GGG + chr1_2:21711924-21711943 Msa0062350:CDS 35.0%
! GAAACTCCAGTTGATGTTAA+TGG + chr1_2:21712003-21712022 Msa0062350:CDS 35.0%
CAAACTCCATTAACATCAAC+TGG - chr1_2:21712012-21712031 None:intergenic 35.0%
! TTGTGATAATGCAGATGAGA+AGG + chr1_2:21712029-21712048 Msa0062350:CDS 35.0%
! AAATGGTTTGGATAAGGTAC+CGG + chr1_2:21712134-21712153 Msa0062350:CDS 35.0%
AATGTGATTCCTGTTGATGT+CGG + chr1_2:21712255-21712274 Msa0062350:CDS 35.0%
ACTTTGACAGCATTATCTGA+AGG - chr1_2:21712390-21712409 None:intergenic 35.0%
GATAATGCTGTCAAAGTTGA+AGG + chr1_2:21712393-21712412 Msa0062350:CDS 35.0%
GAGATTAAAAACGATGCAGT+TGG + chr1_2:21712435-21712454 Msa0062350:CDS 35.0%
GATTAAAAACGATGCAGTTG+GGG + chr1_2:21712437-21712456 Msa0062350:CDS 35.0%
AAATCTGCAACATCAACAGA+AGG - chr1_2:21712645-21712664 None:intergenic 35.0%
AACTTCTCTATCGACAACAT+TGG - chr1_2:21712673-21712692 None:intergenic 35.0%
TTCAGCTTCAACTGAAGTTT+CGG - chr1_2:21712730-21712749 None:intergenic 35.0%
TTCAGTTGAAGCTGAAACTT+CGG + chr1_2:21712734-21712753 Msa0062350:CDS 35.0%
GAAGTTTCAGCTTCAATTGA+AGG - chr1_2:21712819-21712838 None:intergenic 35.0%
TTGTCATCATCATCGTATCT+CGG - chr1_2:21713053-21713072 None:intergenic 35.0%
AAACAATGCAATTTCTGTCG+GGG + chr1_2:21713409-21713428 Msa0062350:CDS 35.0%
!! AAGCATTGAAGAGCAAACTA+AGG + chr1_2:21713701-21713720 Msa0062350:CDS 35.0%
AAGAAGAAATACGAGGAAGA+AGG + chr1_2:21713946-21713965 Msa0062350:CDS 35.0%
TAATCAAGTGGATGAGGTTA+TGG + chr1_2:21713969-21713988 Msa0062350:CDS 35.0%
GTATTTCCCTCAAGGAAAAA+GGG - chr1_2:21714118-21714137 None:intergenic 35.0%
AGTATTTCCCTCAAGGAAAA+AGG - chr1_2:21714119-21714138 None:intergenic 35.0%
TTTCTACAGTATTTCCCTCA+AGG - chr1_2:21714126-21714145 None:intergenic 35.0%
TTGAGGGAAATACTGTAGAA+AGG + chr1_2:21714125-21714144 Msa0062350:intron 35.0%
GATACTAATGCCAAATCTAG+GGG + chr1_2:21714260-21714279 Msa0062350:intron 35.0%
GACCAGTATAAGCTAGTATT+GGG - chr1_2:21714293-21714312 None:intergenic 35.0%
AGACCAGTATAAGCTAGTAT+TGG - chr1_2:21714294-21714313 None:intergenic 35.0%
GTTGCTTGTAGAAATCTAGA+TGG + chr1_2:21714315-21714334 Msa0062350:intron 35.0%
TATTGAGTAGCTAGTGCAAA+AGG + chr1_2:21714381-21714400 Msa0062350:intron 35.0%
!! AAAAGGAATATGCTGCTTTG+TGG + chr1_2:21714398-21714417 Msa0062350:intron 35.0%
! GCATTTGTTGCGTACTTTAA+TGG - chr1_2:21714434-21714453 None:intergenic 35.0%
CCTGAAAATGAGATATCCAT+TGG - chr1_2:21714504-21714523 None:intergenic 35.0%
! CCAATGGATATCTCATTTTC+AGG + chr1_2:21714501-21714520 Msa0062350:intron 35.0%
TCTTACTGCGCTGTATTATT+AGG + chr1_2:21714972-21714991 Msa0062350:intron 35.0%
TAGGCGAATAAACTTGAATG+TGG + chr1_2:21714991-21715010 Msa0062350:intron 35.0%
GAAGAATGATGAGTTCAGAA+AGG + chr1_2:21715058-21715077 Msa0062350:CDS 35.0%
AGTTCAGAAAGGACTATTAC+CGG + chr1_2:21715069-21715088 Msa0062350:CDS 35.0%
! TTACTTGTCTGGCTTATTTC+AGG - chr1_2:21715317-21715336 None:intergenic 35.0%
!!! GCTTTTTAGGTTTACTTGTC+TGG - chr1_2:21715328-21715347 None:intergenic 35.0%
TTTGTTCTCACAGGTTCATT+AGG - chr1_2:21715431-21715450 None:intergenic 35.0%
TAATGAACCTGTGAGAACAA+AGG + chr1_2:21715430-21715449 Msa0062350:CDS 35.0%
CAAAGCTGAAGGAAAAGAAA+AGG + chr1_2:21715507-21715526 Msa0062350:CDS 35.0%
AGAGGAAATTGAGAAAGCTA+AGG + chr1_2:21715532-21715551 Msa0062350:CDS 35.0%
GAGAAAAGAGCAAAGAAGAA+GGG + chr1_2:21715893-21715912 Msa0062350:CDS 35.0%
!! GCTTTGAAATGAAGATCTCA+AGG - chr1_2:21716215-21716234 None:intergenic 35.0%
TTCGATGCAAAGCAATCATT+AGG + chr1_2:21716273-21716292 Msa0062350:three_prime_UTR 35.0%
AATCATTAGGTGTTTGCCTT+GGG + chr1_2:21716286-21716305 Msa0062350:three_prime_UTR 35.0%
TCTCTTCTCTTCTTCTCTGT+CGG + chr1_2:21710595-21710614 Msa0062350:CDS 40.0%
GGGAAATAAGTTAGTTGGGT+GGG - chr1_2:21710654-21710673 None:intergenic 40.0%
AGGGAAATAAGTTAGTTGGG+TGG - chr1_2:21710655-21710674 None:intergenic 40.0%
!! CACAGAGCATTGTAATGGTA+AGG + chr1_2:21710952-21710971 Msa0062350:CDS 40.0%
AACGATCGGATCTGAAAGAA+CGG - chr1_2:21711014-21711033 None:intergenic 40.0%
! TAGCAACGAATCTGAAGTGA+CGG + chr1_2:21711081-21711100 Msa0062350:CDS 40.0%
TTCTAACGGTGAAACGACAA+CGG + chr1_2:21711111-21711130 Msa0062350:CDS 40.0%
TGAAAACGGTGGAGAATTGA+AGG + chr1_2:21711222-21711241 Msa0062350:CDS 40.0%
TGGAGAATTGAAGGAATGTG+CGG + chr1_2:21711231-21711250 Msa0062350:CDS 40.0%
AGAAGAAGAAGAAGTGAAGG+TGG + chr1_2:21711294-21711313 Msa0062350:CDS 40.0%
AAACGGAGTTAAAGAGATCG+AGG + chr1_2:21711408-21711427 Msa0062350:CDS 40.0%
ATCAGCAACTTCTTCAACAG+CGG - chr1_2:21711446-21711465 None:intergenic 40.0%
GAAAGCGAAAATCTTTCGGA+TGG + chr1_2:21711529-21711548 Msa0062350:CDS 40.0%
CGAAATTCGGGATGTTGAAT+TGG + chr1_2:21711936-21711955 Msa0062350:CDS 40.0%
TGATCCTGAAGTGAGTGAAT+CGG + chr1_2:21711969-21711988 Msa0062350:CDS 40.0%
TGTATCAGAGACAGACTCAA+CGG - chr1_2:21712106-21712125 None:intergenic 40.0%
TTATCAGAGACAGACTCAAC+CGG - chr1_2:21712156-21712175 None:intergenic 40.0%
GTTGAGTCTGTCTCTGATAA+TGG + chr1_2:21712156-21712175 Msa0062350:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_2:21712161-21712180 Msa0062350:CDS 40.0%
!! CTCTGATAATGGTTTGGAGA+AGG + chr1_2:21712167-21712186 Msa0062350:CDS 40.0%
! TAATGGTTTGGAGAAGGTAC+AGG + chr1_2:21712173-21712192 Msa0062350:CDS 40.0%
!! GTCTGTCTCTGATAATGGTT+TGG + chr1_2:21712161-21712180 Msa0062350:CDS 40.0%
! TCATTTTCACCTTCATCAGC+AGG - chr1_2:21712312-21712331 None:intergenic 40.0%
TGAGGTGAGAGACATTAAAG+AGG + chr1_2:21712350-21712369 Msa0062350:CDS 40.0%
AGACATTAAAGAGGAGAGTG+AGG + chr1_2:21712359-21712378 Msa0062350:CDS 40.0%
GGATGAAGTTGAACCTTCAA+AGG + chr1_2:21712458-21712477 Msa0062350:CDS 40.0%
TTCAGTTGAAACTGAGACTG+CGG + chr1_2:21712698-21712717 Msa0062350:CDS 40.0%
GAAGGTTCAGCTTCAATTGA+AGG - chr1_2:21712801-21712820 None:intergenic 40.0%
TTCAGCTTCAATAGAGGTCT+CGG - chr1_2:21712850-21712869 None:intergenic 40.0%
TGAAGGTTCAGCTTCAATAG+AGG - chr1_2:21712856-21712875 None:intergenic 40.0%
GAAGTTTGAGCTTCAACTGA+AGG - chr1_2:21712873-21712892 None:intergenic 40.0%
ACATGCTCTTCAACAAGTAG+AGG + chr1_2:21713091-21713110 Msa0062350:CDS 40.0%
!! AACTGCTTACCTTTTTAGCC+AGG - chr1_2:21713154-21713173 None:intergenic 40.0%
CAAATCCAAACGACAAGAGA+TGG + chr1_2:21713358-21713377 Msa0062350:CDS 40.0%
TGAATCCATCTCTTGTCGTT+TGG - chr1_2:21713366-21713385 None:intergenic 40.0%
! TTCAGCGATTACAGCTTTTG+AGG + chr1_2:21713863-21713882 Msa0062350:intron 40.0%
!! ACAGCTTTTGAGGAAGGAAT+TGG + chr1_2:21713873-21713892 Msa0062350:CDS 40.0%
GCTTAGAAGTAATCTCCTGA+AGG + chr1_2:21713900-21713919 Msa0062350:CDS 40.0%
TAGTTATTGCTTCTGCCTTC+AGG - chr1_2:21713918-21713937 None:intergenic 40.0%
AGCAGCAAAGAAGAAATACG+AGG + chr1_2:21713939-21713958 Msa0062350:CDS 40.0%
AGAAGGTAATCAAGTGGATG+AGG + chr1_2:21713963-21713982 Msa0062350:CDS 40.0%
GAAAAGGCAATTGCATGAGA+AGG + chr1_2:21714050-21714069 Msa0062350:CDS 40.0%
GGAAAAAGGGCGGAAAAAAA+AGG - chr1_2:21714105-21714124 None:intergenic 40.0%
TTGAGTGCTTATTCACAACG+AGG + chr1_2:21714217-21714236 Msa0062350:intron 40.0%
! GTCCCAATACTAGCTTATAC+TGG + chr1_2:21714288-21714307 Msa0062350:intron 40.0%
GTAGAAATCTAGATGGCCTA+AGG + chr1_2:21714322-21714341 Msa0062350:intron 40.0%
TTGCGTACTTTAATGGCACA+AGG - chr1_2:21714427-21714446 None:intergenic 40.0%
TCAATGAGACTGCAAGAACT+AGG + chr1_2:21714862-21714881 Msa0062350:CDS 40.0%
!! GCACTTACCAATTAGCTTTC+AGG + chr1_2:21715013-21715032 Msa0062350:intron 40.0%
AGGAGACTGCAAACTTTAGA+TGG + chr1_2:21715113-21715132 Msa0062350:CDS 40.0%
TCAATGAAGGCAGGAATCAT+GGG - chr1_2:21715167-21715186 None:intergenic 40.0%
TTCAATGAAGGCAGGAATCA+TGG - chr1_2:21715168-21715187 None:intergenic 40.0%
TAAGCTCTTTCAATGAAGGC+AGG - chr1_2:21715176-21715195 None:intergenic 40.0%
! GCAAGTTTTGCAGGCTTTTT+AGG - chr1_2:21715341-21715360 None:intergenic 40.0%
GAAGGAAAAGAAAAGGCTAG+AGG + chr1_2:21715514-21715533 Msa0062350:CDS 40.0%
GGAAATTGAGAAAGCTAAGG+AGG + chr1_2:21715535-21715554 Msa0062350:CDS 40.0%
CTTATAGAGAGCCCTTTGTT+GGG - chr1_2:21715594-21715613 None:intergenic 40.0%
AGAAGCTGAGCAAAAAGAGA+AGG + chr1_2:21715622-21715641 Msa0062350:CDS 40.0%
ATAACCATGCCTATTTGTGC+AGG + chr1_2:21715865-21715884 Msa0062350:intron 40.0%
ATGCCTATTTGTGCAGGAAA+GGG + chr1_2:21715871-21715890 Msa0062350:intron 40.0%
GGAGAAAAGAGCAAAGAAGA+AGG + chr1_2:21715892-21715911 Msa0062350:CDS 40.0%
AGTTACTACTGAAGATGCTG+TGG + chr1_2:21715928-21715947 Msa0062350:CDS 40.0%
TGAAACTCTGACAAGAACTC+TGG + chr1_2:21715988-21716007 Msa0062350:CDS 40.0%
TCAGATTGAGAAACCAGTTG+AGG + chr1_2:21716021-21716040 Msa0062350:CDS 40.0%
CAAGGTAAAAGCTTTACCCA+TGG + chr1_2:21716087-21716106 Msa0062350:CDS 40.0%
GTTGAATTCGTCTCTTACCA+CGG - chr1_2:21716123-21716142 None:intergenic 40.0%
GTAAGAGACGAATTCAACCA+TGG + chr1_2:21716125-21716144 Msa0062350:CDS 40.0%
AATTCAACCATGGATGTGGT+GGG + chr1_2:21716135-21716154 Msa0062350:CDS 40.0%
CAATCATTAGGTGTTTGCCT+TGG + chr1_2:21716285-21716304 Msa0062350:three_prime_UTR 40.0%
ATCATTAGGTGTTTGCCTTG+GGG + chr1_2:21716287-21716306 Msa0062350:three_prime_UTR 40.0%
GCTTCTGCGACCAATTATTA+TGG + chr1_2:21716478-21716497 Msa0062350:three_prime_UTR 40.0%
TACTCCACCTTTACCGTTAG+CGG - chr1_2:21711047-21711066 None:intergenic 45.0%
TAACGGTAAAGGTGGAGTAG+CGG + chr1_2:21711048-21711067 Msa0062350:CDS 45.0%
AGAATTGAAGGAATGTGCGG+TGG + chr1_2:21711234-21711253 Msa0062350:CDS 45.0%
AGAAGAAGAAGTGAAGGTGG+AGG + chr1_2:21711297-21711316 Msa0062350:CDS 45.0%
!! AGTTGCTGATTCTACGGATG+CGG + chr1_2:21711456-21711475 Msa0062350:CDS 45.0%
! GGAGGTGGTTGATTCTGATA+CGG + chr1_2:21711480-21711499 Msa0062350:CDS 45.0%
AGTTGAACCAGCTGAGAAGA+AGG + chr1_2:21711600-21711619 Msa0062350:CDS 45.0%
TCACTTTCCTTCTTCTCAGC+TGG - chr1_2:21711610-21711629 None:intergenic 45.0%
! TTGGAAAGTGTAGCTGTTCC+TGG + chr1_2:21711631-21711650 Msa0062350:CDS 45.0%
GGATGTTGAATTGGAAACCG+TGG + chr1_2:21711945-21711964 Msa0062350:CDS 45.0%
ACTCACTTCAGGATCAACCA+CGG - chr1_2:21711965-21711984 None:intergenic 45.0%
TGCAGATGAGAAGGAAACTC+CGG + chr1_2:21712038-21712057 Msa0062350:CDS 45.0%
GTCGAGTCTGTCTCTGATAA+TGG + chr1_2:21712195-21712214 Msa0062350:CDS 45.0%
!! CTCTGATAATGGTTTGGCAG+AGG + chr1_2:21712206-21712225 Msa0062350:CDS 45.0%
! TAATGGTTTGGCAGAGGTTG+AGG + chr1_2:21712212-21712231 Msa0062350:CDS 45.0%
TGAGGTGAGTGAATGCATCA+AGG + chr1_2:21712230-21712249 Msa0062350:CDS 45.0%
ACCTTCTGTTGTTACGTCTG+AGG + chr1_2:21712332-21712351 Msa0062350:CDS 45.0%
ACCTCAGACGTAACAACAGA+AGG - chr1_2:21712336-21712355 None:intergenic 45.0%
! CTCGTAGCTGTTTCCTTTGA+AGG - chr1_2:21712474-21712493 None:intergenic 45.0%
AGCTGAGCCTTCAACAGAAA+TGG + chr1_2:21712497-21712516 Msa0062350:CDS 45.0%
! TCCACTGCCATTTCTGTTGA+AGG - chr1_2:21712507-21712526 None:intergenic 45.0%
AGCCGAACCTTCAACTGAAA+CGG + chr1_2:21712533-21712552 Msa0062350:CDS 45.0%
CACTAGTTCCGTTGAAGGTT+CGG - chr1_2:21712574-21712593 None:intergenic 45.0%
GAACAATGTAGTGCAGAGTG+AGG + chr1_2:21712614-21712633 Msa0062350:CDS 45.0%
GCAGTCTCAGTTTCAACTGA+AGG - chr1_2:21712699-21712718 None:intergenic 45.0%
GAAGCTCAAACTTCAGCTGA+AGG + chr1_2:21712879-21712898 Msa0062350:CDS 45.0%
ATCAGTGGCAGATGCTTCTT+GGG - chr1_2:21712940-21712959 None:intergenic 45.0%
TTTCAGCTCGAATTTCGTCG+CGG - chr1_2:21713130-21713149 None:intergenic 45.0%
AGCTGAAAGCCTGGCTAAAA+AGG + chr1_2:21713142-21713161 Msa0062350:CDS 45.0%
TACAAGAAGAGAGAGCTGCT+AGG + chr1_2:21713327-21713346 Msa0062350:CDS 45.0%
ACAAGAAGAGAGAGCTGCTA+GGG + chr1_2:21713328-21713347 Msa0062350:CDS 45.0%
TGTCGGGGATATAGATAGCA+AGG + chr1_2:21713424-21713443 Msa0062350:CDS 45.0%
TTAGAGGCAGAGTTTCATGC+TGG - chr1_2:21713572-21713591 None:intergenic 45.0%
!! GCGATTACAGCTTTTGAGGA+AGG + chr1_2:21713867-21713886 Msa0062350:intron 45.0%
CGAGGAAGAAGGTAATCAAG+TGG + chr1_2:21713957-21713976 Msa0062350:CDS 45.0%
AAGTGGATGAGGTTATGGCT+CGG + chr1_2:21713974-21713993 Msa0062350:CDS 45.0%
! TTTTCCGCCCTTTTTCCTTG+AGG + chr1_2:21714108-21714127 Msa0062350:intron 45.0%
! TTTCCGCCCTTTTTCCTTGA+GGG + chr1_2:21714109-21714128 Msa0062350:intron 45.0%
TTTCCCTCAAGGAAAAAGGG+CGG - chr1_2:21714115-21714134 None:intergenic 45.0%
GTGCTTATTCACAACGAGGA+AGG + chr1_2:21714221-21714240 Msa0062350:intron 45.0%
ACAAATGCGACACACCTTTG+TGG + chr1_2:21714446-21714465 Msa0062350:intron 45.0%
TAGGCTACATGAGTAGTGTC+TGG + chr1_2:21714538-21714557 Msa0062350:intron 45.0%
GTCTGGAGACTAGTGTTAGT+AGG + chr1_2:21714555-21714574 Msa0062350:intron 45.0%
TCTGCTGAACTAGGTTGTTC+TGG + chr1_2:21714640-21714659 Msa0062350:intron 45.0%
CTGGAGGATGATGTGTTCTT+TGG + chr1_2:21714659-21714678 Msa0062350:intron 45.0%
! GGAGCGCTTATGTATTGATC+AGG + chr1_2:21714909-21714928 Msa0062350:CDS 45.0%
CTCTCAGCCTGAAAGCTAAT+TGG - chr1_2:21715023-21715042 None:intergenic 45.0%
CTTCACCAGGATTAAGCGTT+CGG - chr1_2:21715139-21715158 None:intergenic 45.0%
AAAGGATGAACCTGCTTCCA+AGG + chr1_2:21715277-21715296 Msa0062350:CDS 45.0%
! AGGTTTTTGTACCACAGCCT+TGG - chr1_2:21715297-21715316 None:intergenic 45.0%
! TCTGAAGGAGCAAGTTTTGC+AGG - chr1_2:21715350-21715369 None:intergenic 45.0%
!! TCTGCTGACTTCTTCTCTGA+AGG - chr1_2:21715365-21715384 None:intergenic 45.0%
AGCAGATCGAGTTTCTCGTT+GGG + chr1_2:21715379-21715398 Msa0062350:CDS 45.0%
TGAACCTGTGAGAACAAAGG+AGG + chr1_2:21715433-21715452 Msa0062350:CDS 45.0%
TCTTCCTCCTTTGTTCTCAC+AGG - chr1_2:21715440-21715459 None:intergenic 45.0%
TGTGAGAACAAAGGAGGAAG+AGG + chr1_2:21715439-21715458 Msa0062350:CDS 45.0%
GGAAGAGGAGCAGATCTTAA+AGG + chr1_2:21715454-21715473 Msa0062350:CDS 45.0%
GCAGATCTTAAAGGCTGAAC+AGG + chr1_2:21715463-21715482 Msa0062350:CDS 45.0%
GGAAGAAGAAGCAAAGCTGA+AGG + chr1_2:21715496-21715515 Msa0062350:CDS 45.0%
CCTTATAGAGAGCCCTTTGT+TGG - chr1_2:21715595-21715614 None:intergenic 45.0%
CCAACAAAGGGCTCTCTATA+AGG + chr1_2:21715592-21715611 Msa0062350:CDS 45.0%
CTTTCCTGCACAAATAGGCA+TGG - chr1_2:21715872-21715891 None:intergenic 45.0%
CATGCCTATTTGTGCAGGAA+AGG + chr1_2:21715870-21715889 Msa0062350:intron 45.0%
TCTCCCTTTCCTGCACAAAT+AGG - chr1_2:21715877-21715896 None:intergenic 45.0%
CTTGTCAGAGTTTCAGAGCT+AGG - chr1_2:21715983-21716002 None:intergenic 45.0%
!! GCTCGTTTTGTTACCTCAAC+TGG - chr1_2:21716037-21716056 None:intergenic 45.0%
GACGAATTCAACCATGGATG+TGG + chr1_2:21716131-21716150 Msa0062350:CDS 45.0%
GAATTCAACCATGGATGTGG+TGG + chr1_2:21716134-21716153 Msa0062350:CDS 45.0%
ATTAGAACCCACCACATCCA+TGG - chr1_2:21716145-21716164 None:intergenic 45.0%
! GTGGGTTCTAATTGCAGTTC+TGG + chr1_2:21716153-21716172 Msa0062350:CDS 45.0%
TCATTAGGTGTTTGCCTTGG+GGG + chr1_2:21716288-21716307 Msa0062350:three_prime_UTR 45.0%
!!! TTAGTTTTTTTTTTTTTTTT+TGG - chr1_2:21713816-21713835 None:intergenic 5.0%
! TTCAGGAAGCGCAATGACAG+CGG + chr1_2:21710820-21710839 Msa0062350:intron 50.0%
TTTACCGTTAGCGGCGTCAA+CGG - chr1_2:21711038-21711057 None:intergenic 50.0%
TAAAGGTGGAGTAGCGGTAG+AGG + chr1_2:21711054-21711073 Msa0062350:CDS 50.0%
! CAACGGTTGATGTCGTTGAG+CGG + chr1_2:21711128-21711147 Msa0062350:CDS 50.0%
! AACGGTTGATGTCGTTGAGC+GGG + chr1_2:21711129-21711148 Msa0062350:CDS 50.0%
GTGAAGGTGGAGGATCAACA+CGG + chr1_2:21711307-21711326 Msa0062350:CDS 50.0%
! CGATGTTGTTGTTGCTGACG+TGG + chr1_2:21711354-21711373 Msa0062350:CDS 50.0%
CGGAGTTAAAGAGATCGAGG+AGG + chr1_2:21711411-21711430 Msa0062350:CDS 50.0%
! GGTGGTTGATTCTGATACGG+TGG + chr1_2:21711483-21711502 Msa0062350:CDS 50.0%
! GAAGCTGATTCACTCACTCC+AGG - chr1_2:21711652-21711671 None:intergenic 50.0%
! TCGACCGATTCACTCACTTC+AGG - chr1_2:21711976-21711995 None:intergenic 50.0%
! TCTGATTCGCCGACATCAAC+AGG - chr1_2:21712267-21712286 None:intergenic 50.0%
TTGATGTCGGCGAATCAGAG+AGG + chr1_2:21712268-21712287 Msa0062350:CDS 50.0%
ACACCAGAACCTGCTGATGA+AGG + chr1_2:21712300-21712319 Msa0062350:CDS 50.0%
TCACCTTCATCAGCAGGTTC+TGG - chr1_2:21712306-21712325 None:intergenic 50.0%
GCCTTCAACAGAAATGGCAG+TGG + chr1_2:21712503-21712522 Msa0062350:CDS 50.0%
CGCCGTTTCAGTTGAAGGTT+CGG - chr1_2:21712538-21712557 None:intergenic 50.0%
CGAACCTTCAACTGAAACGG+CGG + chr1_2:21712536-21712555 Msa0062350:CDS 50.0%
GAGTGAAGCCGAACCTTCAA+CGG + chr1_2:21712563-21712582 Msa0062350:CDS 50.0%
CGAACCTTCAACGGAACTAG+TGG + chr1_2:21712572-21712591 Msa0062350:CDS 50.0%
ACCTTCAACGGAACTAGTGG+AGG + chr1_2:21712575-21712594 Msa0062350:CDS 50.0%
CCTTCAACGGAACTAGTGGA+GGG + chr1_2:21712576-21712595 Msa0062350:CDS 50.0%
CATCAGTGGCAGATGCTTCT+TGG - chr1_2:21712941-21712960 None:intergenic 50.0%
AGATGCATCCACAGCATCAG+TGG - chr1_2:21712955-21712974 None:intergenic 50.0%
TGGTGAGGAGGCCATTCTAT+TGG + chr1_2:21713015-21713034 Msa0062350:CDS 50.0%
GAGGAGGCCATTCTATTGGT+TGG + chr1_2:21713019-21713038 Msa0062350:CDS 50.0%
! GGCCATTCTATTGGTTGGTC+CGG + chr1_2:21713024-21713043 Msa0062350:CDS 50.0%
! GCCATTCTATTGGTTGGTCC+GGG + chr1_2:21713025-21713044 Msa0062350:CDS 50.0%
ACCCGGACCAACCAATAGAA+TGG - chr1_2:21713029-21713048 None:intergenic 50.0%
CATCATCGTATCTCGGAACC+CGG - chr1_2:21713046-21713065 None:intergenic 50.0%
CGAAATTCGAGCTGAAAGCC+TGG + chr1_2:21713133-21713152 Msa0062350:CDS 50.0%
TGCTGATGACACTCGTCAAG+AGG + chr1_2:21714005-21714024 Msa0062350:CDS 50.0%
GGGACTCATACCCCTAGATT+TGG - chr1_2:21714273-21714292 None:intergenic 50.0%
! CTTAGGCTGTGTTGACCCAA+TGG + chr1_2:21714485-21714504 Msa0062350:intron 50.0%
GCTGAACTAGGTTGTTCTGG+AGG + chr1_2:21714643-21714662 Msa0062350:intron 50.0%
! ACTGCAAGAACTAGGAGCAC+AGG + chr1_2:21714870-21714889 Msa0062350:CDS 50.0%
! CTGCAAGAACTAGGAGCACA+GGG + chr1_2:21714871-21714890 Msa0062350:CDS 50.0%
! TGCAAGAACTAGGAGCACAG+GGG + chr1_2:21714872-21714891 Msa0062350:CDS 50.0%
ACTATTACCGGTGCAACACC+AGG + chr1_2:21715081-21715100 Msa0062350:CDS 50.0%
ATGAAGGCAGGAATCATGGG+CGG - chr1_2:21715164-21715183 None:intergenic 50.0%
CAGCAGATCGAGTTTCTCGT+TGG + chr1_2:21715378-21715397 Msa0062350:CDS 50.0%
GCAGATCGAGTTTCTCGTTG+GGG + chr1_2:21715380-21715399 Msa0062350:CDS 50.0%
CAGATCGAGTTTCTCGTTGG+GGG + chr1_2:21715381-21715400 Msa0062350:CDS 50.0%
AGATCGAGTTTCTCGTTGGG+GGG + chr1_2:21715382-21715401 Msa0062350:CDS 50.0%
GGACGAGTCTGATGAAGAGA+AGG + chr1_2:21715403-21715422 Msa0062350:CDS 50.0%
TCTTAAAGGCTGAACAGGCG+AGG + chr1_2:21715468-21715487 Msa0062350:CDS 50.0%
!! AAGCTAAGGAGGCACTGCAA+AGG + chr1_2:21715546-21715565 Msa0062350:CDS 50.0%
ATGCCGAAAAGGCCCAACAA+AGG + chr1_2:21715579-21715598 Msa0062350:CDS 50.0%
TGCCGAAAAGGCCCAACAAA+GGG + chr1_2:21715580-21715599 Msa0062350:CDS 50.0%
! AGCCCTTTGTTGGGCCTTTT+CGG - chr1_2:21715585-21715604 None:intergenic 50.0%
TCCGATAACACCGACGACGT+CGG + chr1_2:21710875-21710894 Msa0062350:CDS 55.0%
GTTACCGTTGACGCCGCTAA+CGG + chr1_2:21711031-21711050 Msa0062350:CDS 55.0%
GTTGACGCCGCTAACGGTAA+AGG + chr1_2:21711037-21711056 Msa0062350:CDS 55.0%
!! GGATCAACACGGTGTCGTTG+AGG + chr1_2:21711318-21711337 Msa0062350:CDS 55.0%
!! TGCTGATTCTACGGATGCGG+TGG + chr1_2:21711459-21711478 Msa0062350:CDS 55.0%
TGATTCTACGGATGCGGTGG+AGG + chr1_2:21711462-21711481 Msa0062350:CDS 55.0%
ACCTTCAACTGAAACGGCGG+TGG + chr1_2:21712539-21712558 Msa0062350:CDS 55.0%
TCCACCGCCGTTTCAGTTGA+AGG - chr1_2:21712543-21712562 None:intergenic 55.0%
CCCTCCACTAGTTCCGTTGA+AGG - chr1_2:21712579-21712598 None:intergenic 55.0%
AGCATCTGCCACTGATGCTG+TGG + chr1_2:21712944-21712963 Msa0062350:CDS 55.0%
GTCCTGTGCATCCACGACAT+CGG - chr1_2:21712982-21713001 None:intergenic 55.0%
TGTCGTGGATGCACAGGACA+TGG + chr1_2:21712983-21713002 Msa0062350:CDS 55.0%
GTCGTGGATGCACAGGACAT+GGG + chr1_2:21712984-21713003 Msa0062350:CDS 55.0%
! AGGAGCACAGGGGAAGAAAG+AGG + chr1_2:21714882-21714901 Msa0062350:CDS 55.0%
ACAGGGGAAGAAAGAGGACG+TGG + chr1_2:21714888-21714907 Msa0062350:CDS 55.0%
!! CTGTACTCCTGGTGTTGCAC+CGG - chr1_2:21715091-21715110 None:intergenic 55.0%
! GCAACACCAGGAGTACAGTG+AGG + chr1_2:21715093-21715112 Msa0062350:CDS 55.0%
CAGTCTCCTCACTGTACTCC+TGG - chr1_2:21715102-21715121 None:intergenic 55.0%
GATGGCCGAACGCTTAATCC+TGG + chr1_2:21715131-21715150 Msa0062350:CDS 55.0%
TGAACCTGCTTCCAAGGCTG+TGG + chr1_2:21715283-21715302 Msa0062350:CDS 55.0%
TGTACCACAGCCTTGGAAGC+AGG - chr1_2:21715290-21715309 None:intergenic 55.0%
CCACGGTTGCGAATAGCCAT+GGG - chr1_2:21716106-21716125 None:intergenic 55.0%
ACCACGGTTGCGAATAGCCA+TGG - chr1_2:21716107-21716126 None:intergenic 55.0%
TAGGTGTTTGCCTTGGGGGA+TGG + chr1_2:21716292-21716311 Msa0062350:three_prime_UTR 55.0%
GTAAGGGTTACCATCCCCCA+AGG - chr1_2:21716305-21716324 None:intergenic 55.0%
! AGGAAGCGCAATGACAGCGG+AGG + chr1_2:21710823-21710842 Msa0062350:intron 60.0%
AAGCGCAATGACAGCGGAGG+AGG + chr1_2:21710826-21710845 Msa0062350:CDS 60.0%
!! GCCGACGTCGTCGGTGTTAT+CGG - chr1_2:21710879-21710898 None:intergenic 60.0%
CTCACCTTCACCGCCTTCGA+CGG - chr1_2:21710903-21710922 None:intergenic 60.0%
GCGGCGTCAACGGTAACGAT+CGG - chr1_2:21711028-21711047 None:intergenic 60.0%
GACGCCGCTAACGGTAAAGG+TGG + chr1_2:21711040-21711059 Msa0062350:CDS 60.0%
TTCTACGGATGCGGTGGAGG+TGG + chr1_2:21711465-21711484 Msa0062350:CDS 60.0%
TGCATCTGCCACCGATGTCG+TGG + chr1_2:21712968-21712987 Msa0062350:CDS 60.0%
CTGTGCATCCACGACATCGG+TGG - chr1_2:21712979-21712998 None:intergenic 60.0%
CACCGATGTCGTGGATGCAC+AGG + chr1_2:21712977-21712996 Msa0062350:CDS 60.0%
TGCACAGGACATGGGCTCTG+AGG + chr1_2:21712992-21713011 Msa0062350:CDS 60.0%
!! ACAGGACATGGGCTCTGAGG+TGG + chr1_2:21712995-21713014 Msa0062350:CDS 60.0%
!! ACATGGGCTCTGAGGTGGTG+AGG + chr1_2:21713000-21713019 Msa0062350:CDS 60.0%
ATCATGGGCGGCTCTTCACC+AGG - chr1_2:21715152-21715171 None:intergenic 60.0%
GGCTGAACAGGCGAGGAAGA+CGG + chr1_2:21715475-21715494 Msa0062350:CDS 60.0%
CCCATGGCTATTCGCAACCG+TGG + chr1_2:21716103-21716122 Msa0062350:CDS 60.0%
!! TGGGCTCTGAGGTGGTGAGG+AGG + chr1_2:21713003-21713022 Msa0062350:CDS 65.0%
!! TTCGACGGCGCCGACGTCGT+CGG - chr1_2:21710888-21710907 None:intergenic 70.0%
GACGACGTCGGCGCCGTCGA+AGG + chr1_2:21710887-21710906 Msa0062350:CDS 75.0%
GACGTCGGCGCCGTCGAAGG+CGG + chr1_2:21710890-21710909 Msa0062350:CDS 75.0%
GGCGCCGTCGAAGGCGGTGA+AGG + chr1_2:21710896-21710915 Msa0062350:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 21710579 21716526 21710579 ID=Msa0062350;Name=Msa0062350
chr1_2 mRNA 21710579 21716526 21710579 ID=Msa0062350-mRNA-1;Parent=Msa0062350;Name=Msa0062350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.75|1|0.85|0.75|8|280|1358
chr1_2 exon 21710579 21710708 21710579 ID=Msa0062350-mRNA-1:exon:8077;Parent=Msa0062350-mRNA-1
chr1_2 exon 21710825 21713163 21710825 ID=Msa0062350-mRNA-1:exon:8078;Parent=Msa0062350-mRNA-1
chr1_2 exon 21713287 21713445 21713287 ID=Msa0062350-mRNA-1:exon:8079;Parent=Msa0062350-mRNA-1
chr1_2 exon 21713546 21713722 21713546 ID=Msa0062350-mRNA-1:exon:8080;Parent=Msa0062350-mRNA-1
chr1_2 exon 21713868 21714071 21713868 ID=Msa0062350-mRNA-1:exon:8081;Parent=Msa0062350-mRNA-1
chr1_2 exon 21714832 21714930 21714832 ID=Msa0062350-mRNA-1:exon:8082;Parent=Msa0062350-mRNA-1
chr1_2 exon 21715035 21715643 21715035 ID=Msa0062350-mRNA-1:exon:8083;Parent=Msa0062350-mRNA-1
chr1_2 exon 21715887 21716526 21715887 ID=Msa0062350-mRNA-1:exon:8084;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21710579 21710708 21710579 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21710825 21713163 21710825 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21713287 21713445 21713287 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21713546 21713722 21713546 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21713868 21714071 21713868 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21714832 21714930 21714832 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21715035 21715643 21715035 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 CDS 21715887 21716246 21715887 ID=Msa0062350-mRNA-1:cds;Parent=Msa0062350-mRNA-1
chr1_2 three_prime_UTR 21716247 21716526 21716247 ID=Msa0062350-mRNA-1:three_prime_utr;Parent=Msa0062350-mRNA-1
Gene Sequence

>Msa0062350

TTGTTTATTTATATTTTCTCTTCTCTTCTTCTCTGTCGGCTATTTATCTGCATCTACATCTCTTTCTCTGTTCCCACCCAACTAACTTATTTCCCTTCATCTCTCTCTTTTTTCTTTGATCTACACTTCCGAAGCGCAATGACAGCGGAGGAGGTGTTAAACGTACACAGCAAACAAATTTCCGATAACACCGACGACGTCGGCGCCGTCGAAGGCGGTGAAGGTGAGAGTGAAGATCGTAATCACAACAACAAGATCACAGAGCATTGTAATGGTAAGGAAATTTCTGTTAACGGCAATGTCGGTGTTTCTGATTCCGTTCTTTCAGATCCGATCGTTACCGTTGACGCCGCTAACGGTAAAGGTGGAGTAGCGGTAGAGGATCATAGCAACGAATCTGAAGTGACGGTTATGAATTCTAACGGTGAAACGACAACGGTTGATGTCGTTGAGCGGGAAGAGAAGATTTGTGAAAACGGTTCGGGATCTGATGAGAATAACGTTAATGATGATGAATTTGTGATTGTTGAAAACGGTGGAGAATTGAAGGAATGTGCGGTGGAGAATCTTGTTGAGAATGAGATTCGTGAAGAAGAAGAAGAAGAAGAAGAAGTGAAGGTGGAGGATCAACACGGTGTCGTTGAGGAGAATGAGATTTGCGATGTTGTTGTTGCTGACGTGGACAAGAGTGATCGTGAATTAGAAGGTGTTGAAAACGGAGTTAAAGAGATCGAGGAGGTTTCTGTTGCCGCTGTTGAAGAAGTTGCTGATTCTACGGATGCGGTGGAGGTGGTTGATTCTGATACGGTGGAAAGAACCGAATCTAAAGATCACGAAAGCGAAAATCTTTCGGATGGAAAGAACGAAATTCGTGATGTTGAATTGGAAAGTAAAGTTGATGGTGAAGTTGAACCAGCTGAGAAGAAGGAAAGTGAATTGGAAAGTGTAGCTGTTCCTGGAGTGAGTGAATCAGCTTCAGCTGAGAAGAATGATAATCGCGATGTTGAATTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTACGAAGAATGAAAATCGTGATGTTGAGTTGAAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAGAATGAAAATCGTGATGTTCAATTGGAAAGTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAACGAAATTTTGGAAACTGTAGTTGATTCTGAAGTGAGTGAATCAGCTGAGAAAAACGAAATTCGGGATGTTGAATTGGAAACCGTGGTTGATCCTGAAGTGAGTGAATCGGTCGAGAAGAATGAAACTCCAGTTGATGTTAATGGAGTTTGTGATAATGCAGATGAGAAGGAAACTCCGGTTGATGTTAATGTAGATACTCAAAATGATTTAGAGAAGGTGTCCGTTGAGTCTGTCTCTGATACAATTGTTGAAAATGGTTTGGATAAGGTACCGGTTGAGTCTGTCTCTGATAATGGTTTGGAGAAGGTACAGGTCGAGTCTGTCTCTGATAATGGTTTGGCAGAGGTTGAGGTGAGTGAATGCATCAAGGAGAATGTGATTCCTGTTGATGTCGGCGAATCAGAGAGGTCTGTTGAGACACCAGAACCTGCTGATGAAGGTGAAAATGAACCTTCTGTTGTTACGTCTGAGGTGAGAGACATTAAAGAGGAGAGTGAGGCTGAACCTTCAGATAATGCTGTCAAAGTTGAAGGTGAATCTATTGAAGTCTCTGAGATTAAAAACGATGCAGTTGGGGATGAAGTTGAACCTTCAAAGGAAACAGCTACGAGTGAAGCTGAGCCTTCAACAGAAATGGCAGTGGAGCGTGAAGCCGAACCTTCAACTGAAACGGCGGTGGAGAGTGAAGCCGAACCTTCAACGGAACTAGTGGAGGGTGAAGCTGAAGTTTTGAACAATGTAGTGCAGAGTGAGGCTGAGCCTTCTGTTGATGTTGCAGATTTGAAAACCAATGTTGTCGATAGAGAAGTTGAACCTTCAGTTGAAACTGAGACTGCGGTTGAAGCCGAAACTTCAGTTGAAGCTGAAACTTCGGTTGAAGCCGAAACATCAATTGAAACTTCAGTTGAAGCTGAACCTTCAATTGAAGCTGAACCTTCAATTGAAGCTGAAACTTCGGTTGAAGCCGAGACCTCTATTGAAGCTGAACCTTCAGTTGAAGCTCAAACTTCAGCTGAAGGTAGCAATCAGACAACAGCTGAAGATTTGAAAACATCCCAAGAAGCATCTGCCACTGATGCTGTGGATGCATCTGCCACCGATGTCGTGGATGCACAGGACATGGGCTCTGAGGTGGTGAGGAGGCCATTCTATTGGTTGGTCCGGGTTCCGAGATACGATGATGATGACAATGTAAAAGAGCAGATTCAACATGCTCTTCAACAAGTAGAGGAGCAGACTAAAATCCGCGACGAAATTCGAGCTGAAAGCCTGGCTAAAAAGGCCCTTCGTAAAGAGTATAATCAAGAATTTAGAGCTGCAGTACAAGAAGAGAGAGCTGCTAGGGAGTTGCTCAAATCCAAACGACAAGAGATGGATTCAGTTCAATCCACCATGAATAGATTAAACAATGCAATTTCTGTCGGGGATATAGATAGCAAGATTCGAAACATGGAACACATGATCCAGCATGAAACTCTGCCTCTAAAAGAAGAAAAGCAATTGATTCGCCAAATCAAACTATTGAAGCAAAATCGCGGCGAGCTGTCTAATATTATTGCAAAACAGGATCAATCACAATCTCTCGACGACAAAGAAAGCATTGAAGAGCAAACTAAGCGATTACAGCTTTTGAGGAAGGAATTGGATGTGCTTAGAAGTAATCTCCTGAAGGCAGAAGCAATAACTAAAGCAGCAAAGAAGAAATACGAGGAAGAAGGTAATCAAGTGGATGAGGTTATGGCTCGGTATAACGCTGCTGATGACACTCGTCAAGAGGCATTTGTCAAGTTACAGACTTTGAAAAGGCAATTGCATGAGAAGAGCAAATATTTTTGGGAATACAGAAGTGCTTCAATGAGACTGCAAGAACTAGGAGCACAGGGGAAGAAAGAGGACGTGGAGCGCTTATGTATTGATCAGGCTGAGAGAATGCATGAGCTGTTGAAGAATGATGAGTTCAGAAAGGACTATTACCGGTGCAACACCAGGAGTACAGTGAGGAGACTGCAAACTTTAGATGGCCGAACGCTTAATCCTGGTGAAGAGCCGCCCATGATTCCTGCCTTCATTGAAAGAGCTTACAAAAATGATTCATCAGTTTCGCAGTCAACCCCTGAACAACAAAAGAAATTAACACCAACAGAACCTGTTATTGTTAATACAAAGGATGAACCTGCTTCCAAGGCTGTGGTACAAAAACCTGAAATAAGCCAGACAAGTAAACCTAAAAAGCCTGCAAAACTTGCTCCTTCAGAGAAGAAGTCAGCAGATCGAGTTTCTCGTTGGGGGGACGAGTCTGATGAAGAGAAGGAACCTAATGAACCTGTGAGAACAAAGGAGGAAGAGGAGCAGATCTTAAAGGCTGAACAGGCGAGGAAGACGGAAGAAGAAGCAAAGCTGAAGGAAAAGAAAAGGCTAGAGGAAATTGAGAAAGCTAAGGAGGCACTGCAAAGGAAAAAGCGTAATGCCGAAAAGGCCCAACAAAGGGCTCTCTATAAGGCACAAAAAGAAGCTGAGCAAAAAGAGAAGGAAAGGGAGAAAAGAGCAAAGAAGAAGGGAAAAAGAAAGACAGTTACTACTGAAGATGCTGTGGAGAATACAGAACAAGATGCTGCAGCTTCTCCTAGCTCTGAAACTCTGACAAGAACTCTGGAAGAATCTGATCAGATTGAGAAACCAGTTGAGGTAACAAAACGAGCAGTGAAACCATCTCAATTCACAAAACAAAGCAAGGTAAAAGCTTTACCCATGGCTATTCGCAACCGTGGTAAGAGACGAATTCAACCATGGATGTGGTGGGTTCTAATTGCAGTTCTGGTTATTGCTGCCTTGTTTTATATGGGAAATAACAGCTCCTTGAGATCTTCATTTCAAAGCTTTGGTTTTTGA
Protein sequence

>Msa0062350

LFIYIFSSLLLCRLFICIYISFSVPTQLTYFPSSLSFFFDLHFRSAMTAEEVLNVHSKQISDNTDDVGAVEGGEGESEDRNHNNKITEHCNGKEISVNGNVGVSDSVLSDPIVTVDAANGKGGVAVEDHSNESEVTVMNSNGETTTVDVVEREEKICENGSGSDENNVNDDEFVIVENGGELKECAVENLVENEIREEEEEEEEVKVEDQHGVVEENEICDVVVADVDKSDRELEGVENGVKEIEEVSVAAVEEVADSTDAVEVVDSDTVERTESKDHESENLSDGKNEIRDVELESKVDGEVEPAEKKESELESVAVPGVSESASAEKNDNRDVELETVVDSEVSESATKNENRDVELKTVVDSEVSESAEKNENRDVQLESVVDSEVSESAEKNEILETVVDSEVSESAEKNEIRDVELETVVDPEVSESVEKNETPVDVNGVCDNADEKETPVDVNVDTQNDLEKVSVESVSDTIVENGLDKVPVESVSDNGLEKVQVESVSDNGLAEVEVSECIKENVIPVDVGESERSVETPEPADEGENEPSVVTSEVRDIKEESEAEPSDNAVKVEGESIEVSEIKNDAVGDEVEPSKETATSEAEPSTEMAVEREAEPSTETAVESEAEPSTELVEGEAEVLNNVVQSEAEPSVDVADLKTNVVDREVEPSVETETAVEAETSVEAETSVEAETSIETSVEAEPSIEAEPSIEAETSVEAETSIEAEPSVEAQTSAEGSNQTTAEDLKTSQEASATDAVDASATDVVDAQDMGSEVVRRPFYWLVRVPRYDDDDNVKEQIQHALQQVEEQTKIRDEIRAESLAKKALRKEYNQEFRAAVQEERAARELLKSKRQEMDSVQSTMNRLNNAISVGDIDSKIRNMEHMIQHETLPLKEEKQLIRQIKLLKQNRGELSNIIAKQDQSQSLDDKESIEEQTKRLQLLRKELDVLRSNLLKAEAITKAAKKKYEEEGNQVDEVMARYNAADDTRQEAFVKLQTLKRQLHEKSKYFWEYRSASMRLQELGAQGKKEDVERLCIDQAERMHELLKNDEFRKDYYRCNTRSTVRRLQTLDGRTLNPGEEPPMIPAFIERAYKNDSSVSQSTPEQQKKLTPTEPVIVNTKDEPASKAVVQKPEISQTSKPKKPAKLAPSEKKSADRVSRWGDESDEEKEPNEPVRTKEEEEQILKAEQARKTEEEAKLKEKKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKEAEQKEKEREKRAKKKGKRKTVTTEDAVENTEQDAAASPSSETLTRTLEESDQIEKPVEVTKRAVKPSQFTKQSKVKALPMAIRNRGKRRIQPWMWWVLIAVLVIAALFYMGNNSSLRSSFQSFGF*