AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194170 MtrunA17_Chr2g0284651 82.848 309 0 2 1 256 1 309 0.0 499
Msa0194170 MtrunA17_Chr1g0153761 81.935 310 2 3 1 256 4 313 3.33e-170 472
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194170 AT5G23540.1 79.288 309 10 3 1 256 1 308 2.05e-170 473
Msa0194170 AT5G23540.2 77.606 259 5 2 51 256 1 259 1.29e-136 385

Find 72 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGTTCCCATGGAGGTTA+TGG 0.185250 2_1:+10034631 Msa0194170:CDS
AACAGTCTGTTCATTAGTTT+TGG 0.224880 2_1:-10037022 None:intergenic
GGTGTTCCCATGGAGGTTAT+GGG 0.289500 2_1:+10034632 Msa0194170:CDS
GATCCAATTCAAAGTGTTAA+AGG 0.297544 2_1:+10036635 Msa0194170:CDS
TTCATTCTTCCTGTAATTGA+TGG 0.301331 2_1:-10036920 None:intergenic
ATTCCATAGCCATCAATTAC+AGG 0.318521 2_1:+10036911 Msa0194170:CDS
TTTCCTTTAACACTTTGAAT+TGG 0.338465 2_1:-10036638 None:intergenic
AGACTTGTTCGGATGAATCT+AGG 0.351262 2_1:-10034389 None:intergenic
ATGCTCTTCGAGGTGCTTCT+TGG 0.355935 2_1:-10037444 None:intergenic
GAATCTAGGGTTGGAGAATC+TGG 0.362906 2_1:-10034375 None:intergenic
TAATATTTCTATCTCTGATT+CGG 0.376148 2_1:-10034177 None:intergenic
CTCTTTAGGCATTGATCCAT+GGG 0.379104 2_1:+10036872 Msa0194170:intron
TCTAACATCGTTCAAACTCT+TGG 0.396438 2_1:+10037485 Msa0194170:CDS
TCTGAATAAACCATCCATTC+AGG 0.402001 2_1:+10036748 Msa0194170:CDS
AAGGCAGACAACTTCCAATC+TGG 0.404764 2_1:+10036721 Msa0194170:CDS
TCTCTTTAGGCATTGATCCA+TGG 0.408154 2_1:+10036871 Msa0194170:intron
TTTGATGCTTGGAGAATTTG+TGG 0.413116 2_1:+10034655 Msa0194170:CDS
ATTTGCTATTGCAAGTTTCT+CGG 0.414356 2_1:-10037405 None:intergenic
AGATTGGAAGTTGTCTGCCT+TGG 0.433636 2_1:-10036719 None:intergenic
CATTGATCCATGGGTTGAAC+CGG 0.440732 2_1:+10036881 Msa0194170:CDS
CAAAGAATGTTCGCAGGTGC+AGG 0.448769 2_1:+10034330 Msa0194170:CDS
GAGGTTATGGGTTTGATGCT+TGG 0.451218 2_1:+10034644 Msa0194170:CDS
TTTGCTATTGCAAGTTTCTC+GGG 0.452950 2_1:-10037404 None:intergenic
AATTTGAGACATGCTCTTCG+AGG 0.480365 2_1:-10037454 None:intergenic
GCAATGCCACAGAGTGGAAC+TGG 0.486016 2_1:+10034710 Msa0194170:CDS
CTTCCTGTAATTGATGGCTA+TGG 0.489960 2_1:-10036914 None:intergenic
AACTAATGAACAGACTGTTC+AGG 0.493790 2_1:+10037026 Msa0194170:CDS
GGATGAGATGTAGACTTGTT+CGG 0.496633 2_1:-10034400 None:intergenic
TTTATTCAGATGTCCCAGAT+TGG 0.501681 2_1:-10036735 None:intergenic
TGAATCGATGAATCTGTGTT+GGG 0.502473 2_1:-10034293 None:intergenic
GCAGGTGCAGGTGGAGCCCT+AGG 0.507158 2_1:+10034342 Msa0194170:CDS
AAACTTGCAATAGCAAATGT+TGG 0.510302 2_1:+10037410 Msa0194170:CDS
TGTCCAAGCATCATTGTCTG+TGG 0.515753 2_1:-10036692 None:intergenic
GACTTGTTCGGATGAATCTA+GGG 0.516752 2_1:-10034388 None:intergenic
GTTTGAGTTACGCACCTGAA+TGG 0.524957 2_1:-10036762 None:intergenic
GGACTGATGGCTTGACACTT+AGG 0.529421 2_1:+10036983 Msa0194170:CDS
CATCAAACCCATAACCTCCA+TGG 0.530750 2_1:-10034639 None:intergenic
GAGAGCCGTGGCTGTAGTTG+TGG 0.532971 2_1:+10036613 Msa0194170:CDS
AATAATGCCGGTTCAACCCA+TGG 0.533545 2_1:-10036888 None:intergenic
AAGTCGATGGCGAAGTAAAG+AGG 0.542405 2_1:-10034230 None:intergenic
TTAACAATAATAGGTAGGGC+TGG 0.544991 2_1:+10034611 Msa0194170:intron
AGGTAGGGCTGGTGTTCCCA+TGG 0.547536 2_1:+10034622 Msa0194170:intron
AGGCAGACAACTTCCAATCT+GGG 0.548081 2_1:+10036722 Msa0194170:CDS
GAGTTACGCACCTGAATGGA+TGG 0.549238 2_1:-10036758 None:intergenic
TGTTCGGATGAATCTAGGGT+TGG 0.556841 2_1:-10034384 None:intergenic
ACAGATTCATCGATTCATCA+TGG 0.557263 2_1:+10034299 Msa0194170:exon
AATCCACAGACAATGATGCT+TGG 0.566917 2_1:+10036689 Msa0194170:CDS
ATGAATCGATGAATCTGTGT+TGG 0.575503 2_1:-10034294 None:intergenic
AGAATGTTCGCAGGTGCAGG+TGG 0.582287 2_1:+10034333 Msa0194170:CDS
AGGGTTGGAGAATCTGGTGG+TGG 0.583084 2_1:-10034369 None:intergenic
AATCTGGTGGTGGATGACCT+AGG 0.583160 2_1:-10034359 None:intergenic
ATCAAACCCATAACCTCCAT+GGG 0.586388 2_1:-10034638 None:intergenic
AATTCAAAGTGTTAAAGGAA+AGG 0.587669 2_1:+10036640 Msa0194170:CDS
ATCTGGTGGTGGATGACCTA+GGG 0.587858 2_1:-10034358 None:intergenic
ATACAACAAGGCTGTTCAAG+AGG 0.587968 2_1:+10037367 Msa0194170:intron
TTCATCGATTCATCATGGAA+AGG 0.606178 2_1:+10034304 Msa0194170:exon
TCAAAGTGTTAAAGGAAAGG+TGG 0.613319 2_1:+10036643 Msa0194170:CDS
TGGCTATGGAATAATAATGC+CGG 0.615459 2_1:-10036900 None:intergenic
AGGCTTCAAAGAATGTTCGC+AGG 0.619756 2_1:+10034324 Msa0194170:CDS
AGTCGATGGCGAAGTAAAGA+GGG 0.620664 2_1:-10034229 None:intergenic
TAGGGCTGGTGTTCCCATGG+AGG 0.627642 2_1:+10034625 Msa0194170:CDS
AAGCATCTTGAGAAGAGCGA+GGG 0.629521 2_1:-10034421 None:intergenic
GGCTTTGAATCAGAGAGCCG+TGG 0.631150 2_1:+10036601 Msa0194170:CDS
TGGATCCACAACTACAGCCA+CGG 0.635765 2_1:-10036618 None:intergenic
TAAGCATCTTGAGAAGAGCG+AGG 0.654674 2_1:-10034422 None:intergenic
TTACAGGAAGAATGAACTCG+AGG 0.664198 2_1:+10036927 Msa0194170:CDS
GAATCGATGAATCTGTGTTG+GGG 0.664991 2_1:-10034292 None:intergenic
CTTCTCAAGATGCTTAAACA+CGG 0.678967 2_1:+10034429 Msa0194170:CDS
TCTAGGGTTGGAGAATCTGG+TGG 0.686607 2_1:-10034372 None:intergenic
CTAACACCAGTTCCACTCTG+TGG 0.696288 2_1:-10034716 None:intergenic
TGATGCTTGGACAAGAACCA+AGG 0.701272 2_1:+10036702 Msa0194170:CDS
GTGTTTGCAATGCCACAGAG+TGG 0.719761 2_1:+10034704 Msa0194170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTTTTAACAATAAT+AGG + chr2_1:10034602-10034621 Msa0194170:intron 10.0%
!!! AGCTTTTAAAAAAATAAAAT+CGG + chr2_1:10036003-10036022 Msa0194170:intron 10.0%
!!! TTTTTTTAACAATAATAGGT+AGG + chr2_1:10034606-10034625 Msa0194170:intron 15.0%
!!! TTTTTTAACAATAATAGGTA+GGG + chr2_1:10034607-10034626 Msa0194170:intron 15.0%
!! AAATGAGTTTGATTAATTTA+AGG + chr2_1:10036134-10036153 Msa0194170:intron 15.0%
!!! TAAGATTTTCATTCATTAAA+TGG - chr2_1:10036254-10036273 None:intergenic 15.0%
!!! TTTTTTTGGATGTATTATTT+TGG + chr2_1:10036813-10036832 Msa0194170:intron 15.0%
!!! TTTTTAACTTCATCAAATCA+TGG + chr2_1:10034545-10034564 Msa0194170:intron 20.0%
!!! TTTTAACTTCATCAAATCAT+GGG + chr2_1:10034546-10034565 Msa0194170:intron 20.0%
!! GGTATTTCAATTTCAAAATT+AGG + chr2_1:10034567-10034586 Msa0194170:intron 20.0%
!!! TATTATAATTTTTGACGACA+TGG + chr2_1:10035291-10035310 Msa0194170:intron 20.0%
!! AGTTATTAATTTACTTTCAG+TGG + chr2_1:10035320-10035339 Msa0194170:intron 20.0%
!! TTTAAAAGCTGTTGAAATTT+GGG - chr2_1:10035993-10036012 None:intergenic 20.0%
!!! TTTTAAAAGCTGTTGAAATT+TGG - chr2_1:10035994-10036013 None:intergenic 20.0%
!!! AGTTGTAATCTTGTTTTTAA+AGG + chr2_1:10036193-10036212 Msa0194170:intron 20.0%
!!! GTTGTAATCTTGTTTTTAAA+GGG + chr2_1:10036194-10036213 Msa0194170:intron 20.0%
!!! AAGTCAATATTTTTTAAGCA+TGG + chr2_1:10036296-10036315 Msa0194170:intron 20.0%
!! AATTTCAATTATCAAGACAA+TGG - chr2_1:10036397-10036416 None:intergenic 20.0%
!! TTTATAAAATAGCCATTAGT+TGG - chr2_1:10036446-10036465 None:intergenic 20.0%
!!! ATCAACGTAATTCAAATTTT+TGG - chr2_1:10036469-10036488 None:intergenic 20.0%
!!! ACTTGTTTCTAATTAGTTAT+TGG + chr2_1:10036526-10036545 Msa0194170:intron 20.0%
!!! CGATATTCATACAATTTTTT+TGG + chr2_1:10036799-10036818 Msa0194170:intron 20.0%
!! TTAATCTTCACAAAAAGAAA+TGG + chr2_1:10036962-10036981 Msa0194170:CDS 20.0%
!! GTTTATTTGATTAATCAGAT+AGG - chr2_1:10037093-10037112 None:intergenic 20.0%
!!! CCGTTTTTAAATCTAAAAAT+CGG - chr2_1:10037136-10037155 None:intergenic 20.0%
!!! CCGATTTTTAGATTTAAAAA+CGG + chr2_1:10037133-10037152 Msa0194170:intron 20.0%
!!! TCTCAATTAATTTGAAATGT+AGG + chr2_1:10037322-10037341 Msa0194170:intron 20.0%
! TCTTTAACCTAATCAAATCA+TGG + chr2_1:10034463-10034482 Msa0194170:intron 25.0%
! CTTTAACCTAATCAAATCAT+GGG + chr2_1:10034464-10034483 Msa0194170:intron 25.0%
! GCTATCCAATTTCATAATTA+GGG + chr2_1:10034486-10034505 Msa0194170:intron 25.0%
! CAAAACCCTAATTATGAAAT+TGG - chr2_1:10034494-10034513 None:intergenic 25.0%
! ATGCTAAGATTTGTGAATTT+AGG + chr2_1:10034821-10034840 Msa0194170:intron 25.0%
! TGCTAAGATTTGTGAATTTA+GGG + chr2_1:10034822-10034841 Msa0194170:intron 25.0%
! AACATGAATAACACAATGTT+TGG - chr2_1:10035065-10035084 None:intergenic 25.0%
!! AATCCAAAGTATTTATGTGT+CGG + chr2_1:10035238-10035257 Msa0194170:intron 25.0%
! CACTAAAATCAAAACTATCT+AGG - chr2_1:10035269-10035288 None:intergenic 25.0%
! TTTCCAAAACAGAGTAAATT+AGG - chr2_1:10035441-10035460 None:intergenic 25.0%
! ATTATGATGAGACTGATAAT+AGG - chr2_1:10035587-10035606 None:intergenic 25.0%
! TTAAAAGCTGTTGAAATTTG+GGG - chr2_1:10035992-10036011 None:intergenic 25.0%
!!! CTTGTTTTTAAAGGGATTTT+AGG + chr2_1:10036202-10036221 Msa0194170:intron 25.0%
!! TCATAACTGTTAGATTTTGT+CGG + chr2_1:10036226-10036245 Msa0194170:intron 25.0%
!!! TATTGACTTTCTAAGAAATC+AGG - chr2_1:10036285-10036304 None:intergenic 25.0%
!! AAAATATTTTCCGTTATCAG+TGG + chr2_1:10036364-10036383 Msa0194170:intron 25.0%
! GTTTCTAATTAGTTATTGGT+TGG + chr2_1:10036530-10036549 Msa0194170:intron 25.0%
! TTTCCTTTAACACTTTGAAT+TGG - chr2_1:10036641-10036660 None:intergenic 25.0%
!! AATTCAAAGTGTTAAAGGAA+AGG + chr2_1:10036640-10036659 Msa0194170:CDS 25.0%
! TATAAGTTTCATAAGCTTTC+AGG + chr2_1:10037251-10037270 Msa0194170:intron 25.0%
! ATAAGTTTCATAAGCTTTCA+GGG + chr2_1:10037252-10037271 Msa0194170:intron 25.0%
! TTGAGATCTATTAGTATCTA+GGG - chr2_1:10037308-10037327 None:intergenic 25.0%
! ATTGAGATCTATTAGTATCT+AGG - chr2_1:10037309-10037328 None:intergenic 25.0%
!!! ATTTTTGAAGTTGAAGTCGA+TGG - chr2_1:10034246-10034265 None:intergenic 30.0%
GGCTATCCAATTTCATAATT+AGG + chr2_1:10034485-10034504 Msa0194170:intron 30.0%
TAAGATTTGTGAATTTAGGG+TGG + chr2_1:10034825-10034844 Msa0194170:intron 30.0%
TAAACACTTGTTTGAGCTTA+TGG + chr2_1:10034877-10034896 Msa0194170:intron 30.0%
TTCATGGCATCATTCATAAA+CGG + chr2_1:10034906-10034925 Msa0194170:intron 30.0%
ATATAAGCACTTATGTGACA+AGG + chr2_1:10035020-10035039 Msa0194170:intron 30.0%
TATAAGCACTTATGTGACAA+GGG + chr2_1:10035021-10035040 Msa0194170:intron 30.0%
GATACAGAAACAAGACATAA+AGG - chr2_1:10035207-10035226 None:intergenic 30.0%
GACACATAAATACTTTGGAT+TGG - chr2_1:10035239-10035258 None:intergenic 30.0%
! TAATTTTTGACGACATGGTT+TGG + chr2_1:10035296-10035315 Msa0194170:intron 30.0%
! ATTTTGCTGAACACTCTTTT+TGG + chr2_1:10035413-10035432 Msa0194170:intron 30.0%
! GTTCCTAATTTACTCTGTTT+TGG + chr2_1:10035435-10035454 Msa0194170:intron 30.0%
!!! TCTGTTTTGGAAAAGTTTTG+TGG + chr2_1:10035448-10035467 Msa0194170:intron 30.0%
GTGGAAAGAACATTAGTTAA+TGG + chr2_1:10035467-10035486 Msa0194170:intron 30.0%
AAAATACCAAGTTTGAACTC+TGG - chr2_1:10035779-10035798 None:intergenic 30.0%
! AGAGTTCAAACTTGGTATTT+TGG + chr2_1:10035778-10035797 Msa0194170:intron 30.0%
CTAATTCATCCTTACAAAAC+CGG - chr2_1:10035968-10035987 None:intergenic 30.0%
! ATAAAATCGGCATTGAAATC+TGG + chr2_1:10036016-10036035 Msa0194170:intron 30.0%
AAACAAGATTACAACTGCAA+TGG - chr2_1:10036189-10036208 None:intergenic 30.0%
! CATAACTGTTAGATTTTGTC+GGG + chr2_1:10036227-10036246 Msa0194170:intron 30.0%
! ATAACTGTTAGATTTTGTCG+GGG + chr2_1:10036228-10036247 Msa0194170:intron 30.0%
! ATTAAGAGCTCCTTATTTGA+GGG - chr2_1:10036336-10036355 None:intergenic 30.0%
! GTTGATCGAAGTTTTCATTT+AGG + chr2_1:10036483-10036502 Msa0194170:intron 30.0%
! AAGTTTTCATTTAGGTCTAG+TGG + chr2_1:10036491-10036510 Msa0194170:intron 30.0%
! GATCCAATTCAAAGTGTTAA+AGG + chr2_1:10036635-10036654 Msa0194170:CDS 30.0%
GTATCATATTACCTCTCTTT+AGG + chr2_1:10036858-10036877 Msa0194170:intron 30.0%
TTCATTCTTCCTGTAATTGA+TGG - chr2_1:10036923-10036942 None:intergenic 30.0%
!! AACAGTCTGTTCATTAGTTT+TGG - chr2_1:10037025-10037044 None:intergenic 30.0%
TTGATTAATCAGATAGGCAA+CGG - chr2_1:10037087-10037106 None:intergenic 30.0%
!! ATTTGCTATTGCAAGTTTCT+CGG - chr2_1:10037408-10037427 None:intergenic 30.0%
AAACTTGCAATAGCAAATGT+TGG + chr2_1:10037410-10037429 Msa0194170:CDS 30.0%
TGAATCGATGAATCTGTGTT+GGG - chr2_1:10034296-10034315 None:intergenic 35.0%
ATGAATCGATGAATCTGTGT+TGG - chr2_1:10034297-10034316 None:intergenic 35.0%
!! ACAGATTCATCGATTCATCA+TGG + chr2_1:10034299-10034318 Msa0194170:exon 35.0%
!! TTCATCGATTCATCATGGAA+AGG + chr2_1:10034304-10034323 Msa0194170:exon 35.0%
CTTCTCAAGATGCTTAAACA+CGG + chr2_1:10034429-10034448 Msa0194170:CDS 35.0%
TTAACAATAATAGGTAGGGC+TGG + chr2_1:10034611-10034630 Msa0194170:intron 35.0%
TTTGATGCTTGGAGAATTTG+TGG + chr2_1:10034655-10034674 Msa0194170:CDS 35.0%
CTTGATATGCTCAAACAAAC+TGG + chr2_1:10034776-10034795 Msa0194170:intron 35.0%
ATATGCTCAAACAAACTGGA+AGG + chr2_1:10034780-10034799 Msa0194170:intron 35.0%
GAGCTTATGGAAATAGTTCA+TGG + chr2_1:10034890-10034909 Msa0194170:intron 35.0%
TATCATTCACATCCTGGATT+TGG + chr2_1:10035131-10035150 Msa0194170:intron 35.0%
CAACCGACACATAAATACTT+TGG - chr2_1:10035244-10035263 None:intergenic 35.0%
ATTCACGTCAAAGAGATTCA+CGG - chr2_1:10035353-10035372 None:intergenic 35.0%
! GATATGAGGATTGGTATAGT+GGG - chr2_1:10035543-10035562 None:intergenic 35.0%
AGTTGTTACGATATGAGGAT+TGG - chr2_1:10035552-10035571 None:intergenic 35.0%
AAGCATACAGTGCATACTAT+AGG - chr2_1:10035657-10035676 None:intergenic 35.0%
!!! CTTGGTATTTTGGCTTTTGT+TGG + chr2_1:10035788-10035807 Msa0194170:intron 35.0%
!! CGGTTTTGTAAGGATGAATT+AGG + chr2_1:10035966-10035985 Msa0194170:intron 35.0%
! GATTAAGAGCTCCTTATTTG+AGG - chr2_1:10036337-10036356 None:intergenic 35.0%
!! TGGTTTGTTTCCACTGATAA+CGG - chr2_1:10036377-10036396 None:intergenic 35.0%
! TCAAAGTGTTAAAGGAAAGG+TGG + chr2_1:10036643-10036662 Msa0194170:CDS 35.0%
TTTATTCAGATGTCCCAGAT+TGG - chr2_1:10036738-10036757 None:intergenic 35.0%
TCTGAATAAACCATCCATTC+AGG + chr2_1:10036748-10036767 Msa0194170:CDS 35.0%
TGGCTATGGAATAATAATGC+CGG - chr2_1:10036903-10036922 None:intergenic 35.0%
ATTCCATAGCCATCAATTAC+AGG + chr2_1:10036911-10036930 Msa0194170:CDS 35.0%
!! CACAAAAAGAAATGGACTGA+TGG + chr2_1:10036970-10036989 Msa0194170:CDS 35.0%
AACTAATGAACAGACTGTTC+AGG + chr2_1:10037026-10037045 Msa0194170:CDS 35.0%
CTTAGCTACCAAATACAACA+AGG + chr2_1:10037355-10037374 Msa0194170:intron 35.0%
!! TTGAACAGCCTTGTTGTATT+TGG - chr2_1:10037366-10037385 None:intergenic 35.0%
!! TTTGCTATTGCAAGTTTCTC+GGG - chr2_1:10037407-10037426 None:intergenic 35.0%
TCTAACATCGTTCAAACTCT+TGG + chr2_1:10037485-10037504 Msa0194170:CDS 35.0%
GAATCGATGAATCTGTGTTG+GGG - chr2_1:10034295-10034314 None:intergenic 40.0%
! GACTTGTTCGGATGAATCTA+GGG - chr2_1:10034391-10034410 None:intergenic 40.0%
! AGACTTGTTCGGATGAATCT+AGG - chr2_1:10034392-10034411 None:intergenic 40.0%
! GGATGAGATGTAGACTTGTT+CGG - chr2_1:10034403-10034422 None:intergenic 40.0%
GGATAGCCCATGATTTGATT+AGG - chr2_1:10034473-10034492 None:intergenic 40.0%
ATCAAACCCATAACCTCCAT+GGG - chr2_1:10034641-10034660 None:intergenic 40.0%
TGTTGACATCAATACACAGC+AGG + chr2_1:10035169-10035188 Msa0194170:intron 40.0%
ATACACAGCAGGTTCTACTA+TGG + chr2_1:10035180-10035199 Msa0194170:intron 40.0%
!! TATAGTGGGTTGGCAAAGTT+GGG - chr2_1:10035529-10035548 None:intergenic 40.0%
! CGATATGAGGATTGGTATAG+TGG - chr2_1:10035544-10035563 None:intergenic 40.0%
GTCAGAGTTGTTACGATATG+AGG - chr2_1:10035557-10035576 None:intergenic 40.0%
CATAATAGCCACTGTGACTT+AGG + chr2_1:10035601-10035620 Msa0194170:intron 40.0%
! TTAGGTTGTTTGCTCGCTTA+TGG + chr2_1:10035619-10035638 Msa0194170:intron 40.0%
CTTAGTTTCCCCAAGAAGAT+CGG + chr2_1:10035674-10035693 Msa0194170:intron 40.0%
CTTCATTGTGTTGCCTTTGA+GGG + chr2_1:10035890-10035909 Msa0194170:intron 40.0%
TTCATTGTGTTGCCTTTGAG+GGG + chr2_1:10035891-10035910 Msa0194170:intron 40.0%
CATTGAAATCTGGATCACCA+AGG + chr2_1:10036026-10036045 Msa0194170:intron 40.0%
AGAATACTTTGCACGCTGTT+TGG - chr2_1:10036084-10036103 None:intergenic 40.0%
AGATTACAACTGCAATGGAC+CGG - chr2_1:10036184-10036203 None:intergenic 40.0%
AATAGCCATTAGTTGGCACT+TGG - chr2_1:10036439-10036458 None:intergenic 40.0%
AATCCACAGACAATGATGCT+TGG + chr2_1:10036689-10036708 Msa0194170:CDS 40.0%
ATGGATCAATGCCTAAAGAG+AGG - chr2_1:10036872-10036891 None:intergenic 40.0%
!! TCTCTTTAGGCATTGATCCA+TGG + chr2_1:10036871-10036890 Msa0194170:intron 40.0%
!! CTCTTTAGGCATTGATCCAT+GGG + chr2_1:10036872-10036891 Msa0194170:intron 40.0%
! CTTCCTGTAATTGATGGCTA+TGG - chr2_1:10036917-10036936 None:intergenic 40.0%
TTACAGGAAGAATGAACTCG+AGG + chr2_1:10036927-10036946 Msa0194170:CDS 40.0%
TTAAGATGCAGCGTGTAATG+TGG + chr2_1:10037054-10037073 Msa0194170:intron 40.0%
TAAGATGCAGCGTGTAATGT+GGG + chr2_1:10037055-10037074 Msa0194170:intron 40.0%
AAGCTTTCAGGGAGAACTTA+CGG + chr2_1:10037263-10037282 Msa0194170:intron 40.0%
ATACAACAAGGCTGTTCAAG+AGG + chr2_1:10037367-10037386 Msa0194170:intron 40.0%
! AATTTGAGACATGCTCTTCG+AGG - chr2_1:10037457-10037476 None:intergenic 40.0%
AGTCGATGGCGAAGTAAAGA+GGG - chr2_1:10034232-10034251 None:intergenic 45.0%
AAGTCGATGGCGAAGTAAAG+AGG - chr2_1:10034233-10034252 None:intergenic 45.0%
AGGCTTCAAAGAATGTTCGC+AGG + chr2_1:10034324-10034343 Msa0194170:CDS 45.0%
! GAATCTAGGGTTGGAGAATC+TGG - chr2_1:10034378-10034397 None:intergenic 45.0%
! TGTTCGGATGAATCTAGGGT+TGG - chr2_1:10034387-10034406 None:intergenic 45.0%
AAGCATCTTGAGAAGAGCGA+GGG - chr2_1:10034424-10034443 None:intergenic 45.0%
TAAGCATCTTGAGAAGAGCG+AGG - chr2_1:10034425-10034444 None:intergenic 45.0%
CATCAAACCCATAACCTCCA+TGG - chr2_1:10034642-10034661 None:intergenic 45.0%
GAGGTTATGGGTTTGATGCT+TGG + chr2_1:10034644-10034663 Msa0194170:CDS 45.0%
ATTGTGTTGCAGACCAGAGA+TGG + chr2_1:10035097-10035116 Msa0194170:intron 45.0%
!! GTATAGTGGGTTGGCAAAGT+TGG - chr2_1:10035530-10035549 None:intergenic 45.0%
!! TGAGGATTGGTATAGTGGGT+TGG - chr2_1:10035539-10035558 None:intergenic 45.0%
GCAAACAACCTAAGTCACAG+TGG - chr2_1:10035612-10035631 None:intergenic 45.0%
TTGATTGGACGGTACATACG+TGG - chr2_1:10035745-10035764 None:intergenic 45.0%
ACCGTCCAATCAAGATCAGA+CGG + chr2_1:10035752-10035771 Msa0194170:intron 45.0%
ACCGTCTGATCTTGATTGGA+CGG - chr2_1:10035756-10035775 None:intergenic 45.0%
TGGAAATTCCGCCTTAACTG+CGG + chr2_1:10035808-10035827 Msa0194170:intron 45.0%
CAAACCAAAGCCCGCAATTT+AGG - chr2_1:10035848-10035867 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr2_1:10035883-10035902 None:intergenic 45.0%
! AGGCAACACAATGAAGGTGT+TGG - chr2_1:10035886-10035905 None:intergenic 45.0%
CCTCAAAGGCAACACAATGA+AGG - chr2_1:10035892-10035911 None:intergenic 45.0%
CCTTCATTGTGTTGCCTTTG+AGG + chr2_1:10035889-10035908 Msa0194170:intron 45.0%
! TCATTGTGTTGCCTTTGAGG+GGG + chr2_1:10035892-10035911 Msa0194170:intron 45.0%
TGTCCTATCTATCCGATGTG+GGG - chr2_1:10035927-10035946 None:intergenic 45.0%
GTGTCCTATCTATCCGATGT+GGG - chr2_1:10035928-10035947 None:intergenic 45.0%
TGTGTCCTATCTATCCGATG+TGG - chr2_1:10035929-10035948 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr2_1:10035959-10035978 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr2_1:10035956-10035975 Msa0194170:intron 45.0%
AAATCTGGATCACCAAGGTG+TGG + chr2_1:10036031-10036050 Msa0194170:intron 45.0%
CTTTGCACGCTGTTTGGATT+GGG - chr2_1:10036078-10036097 None:intergenic 45.0%
ACTTTGCACGCTGTTTGGAT+TGG - chr2_1:10036079-10036098 None:intergenic 45.0%
CAGTACTCTCTCAGATAAGC+TGG - chr2_1:10036112-10036131 None:intergenic 45.0%
ATCACCCATGCAAGTAATGC+CGG + chr2_1:10036162-10036181 Msa0194170:intron 45.0%
CTTATTTGAGGGATCAGAGC+AGG - chr2_1:10036325-10036344 None:intergenic 45.0%
CTGCTCTGATCCCTCAAATA+AGG + chr2_1:10036323-10036342 Msa0194170:intron 45.0%
!! TAGTTATTGGTTGGTGCTGC+TGG + chr2_1:10036539-10036558 Msa0194170:intron 45.0%
TCAAAGCCTCAAAACTCTGC+AGG - chr2_1:10036589-10036608 None:intergenic 45.0%
TGTCCAAGCATCATTGTCTG+TGG - chr2_1:10036695-10036714 None:intergenic 45.0%
TGATGCTTGGACAAGAACCA+AGG + chr2_1:10036702-10036721 Msa0194170:CDS 45.0%
AGATTGGAAGTTGTCTGCCT+TGG - chr2_1:10036722-10036741 None:intergenic 45.0%
AAGGCAGACAACTTCCAATC+TGG + chr2_1:10036721-10036740 Msa0194170:CDS 45.0%
AGGCAGACAACTTCCAATCT+GGG + chr2_1:10036722-10036741 Msa0194170:CDS 45.0%
! GTTTGAGTTACGCACCTGAA+TGG - chr2_1:10036765-10036784 None:intergenic 45.0%
! CATTGATCCATGGGTTGAAC+CGG + chr2_1:10036881-10036900 Msa0194170:CDS 45.0%
!! AATAATGCCGGTTCAACCCA+TGG - chr2_1:10036891-10036910 None:intergenic 45.0%
CAAAGAATGTTCGCAGGTGC+AGG + chr2_1:10034330-10034349 Msa0194170:CDS 50.0%
!! ATCTGGTGGTGGATGACCTA+GGG - chr2_1:10034361-10034380 None:intergenic 50.0%
!! AATCTGGTGGTGGATGACCT+AGG - chr2_1:10034362-10034381 None:intergenic 50.0%
! TCTAGGGTTGGAGAATCTGG+TGG - chr2_1:10034375-10034394 None:intergenic 50.0%
TGGTGTTCCCATGGAGGTTA+TGG + chr2_1:10034631-10034650 Msa0194170:CDS 50.0%
GGTGTTCCCATGGAGGTTAT+GGG + chr2_1:10034632-10034651 Msa0194170:CDS 50.0%
GTGTTTGCAATGCCACAGAG+TGG + chr2_1:10034704-10034723 Msa0194170:CDS 50.0%
CTAACACCAGTTCCACTCTG+TGG - chr2_1:10034719-10034738 None:intergenic 50.0%
TGCAGACCAGAGATGGTTGT+TGG + chr2_1:10035104-10035123 Msa0194170:intron 50.0%
TACCAGCCAACAACCATCTC+TGG - chr2_1:10035113-10035132 None:intergenic 50.0%
GGCTGGTATCATTCACATCC+TGG + chr2_1:10035125-10035144 Msa0194170:intron 50.0%
CACATCCTGGATTTGGCTGT+TGG + chr2_1:10035138-10035157 Msa0194170:intron 50.0%
GACAACCAACAGCCAAATCC+AGG - chr2_1:10035146-10035165 None:intergenic 50.0%
! GGATTTGGCTGTTGGTTGTC+TGG + chr2_1:10035146-10035165 Msa0194170:intron 50.0%
TTCCCCAAGAAGATCGGATC+TGG + chr2_1:10035680-10035699 Msa0194170:intron 50.0%
TCCCCAAGAAGATCGGATCT+GGG + chr2_1:10035681-10035700 Msa0194170:intron 50.0%
AGCCCAGATCCGATCTTCTT+GGG - chr2_1:10035686-10035705 None:intergenic 50.0%
TTGGACGGTACATACGTGGT+TGG - chr2_1:10035741-10035760 None:intergenic 50.0%
CTGGACCGTCTGATCTTGAT+TGG - chr2_1:10035760-10035779 None:intergenic 50.0%
GACGGTCCAGAGTTCAAACT+TGG + chr2_1:10035770-10035789 Msa0194170:intron 50.0%
TCCCCTAGTCGCCTAAATTG+CGG + chr2_1:10035834-10035853 Msa0194170:intron 50.0%
TAGCCCCACATCGGATAGAT+AGG + chr2_1:10035921-10035940 Msa0194170:intron 50.0%
ACACTCCTCACCTTACAAGC+CGG + chr2_1:10035946-10035965 Msa0194170:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr2_1:10035954-10035973 None:intergenic 50.0%
AGTGTGACTGAACCACACCT+TGG - chr2_1:10036046-10036065 None:intergenic 50.0%
TGGACCGGCATTACTTGCAT+GGG - chr2_1:10036169-10036188 None:intergenic 50.0%
ATGGACCGGCATTACTTGCA+TGG - chr2_1:10036170-10036189 None:intergenic 50.0%
CACTGCCAAGTGCCAACTAA+TGG + chr2_1:10036431-10036450 Msa0194170:intron 50.0%
! TCGTGTCCTGCAGAGTTTTG+AGG + chr2_1:10036580-10036599 Msa0194170:intron 50.0%
TGGATCCACAACTACAGCCA+CGG - chr2_1:10036621-10036640 None:intergenic 50.0%
GAGTTACGCACCTGAATGGA+TGG - chr2_1:10036761-10036780 None:intergenic 50.0%
GGACTGATGGCTTGACACTT+AGG + chr2_1:10036983-10037002 Msa0194170:CDS 50.0%
! ATGCTCTTCGAGGTGCTTCT+TGG - chr2_1:10037447-10037466 None:intergenic 50.0%
AGAATGTTCGCAGGTGCAGG+TGG + chr2_1:10034333-10034352 Msa0194170:CDS 55.0%
AGGGTTGGAGAATCTGGTGG+TGG - chr2_1:10034372-10034391 None:intergenic 55.0%
GCAATGCCACAGAGTGGAAC+TGG + chr2_1:10034710-10034729 Msa0194170:CDS 55.0%
GACCAGAGATGGTTGTTGGC+TGG + chr2_1:10035108-10035127 Msa0194170:intron 55.0%
GCCCAGATCCGATCTTCTTG+GGG - chr2_1:10035685-10035704 None:intergenic 55.0%
CAGCCCAGATCCGATCTTCT+TGG - chr2_1:10035687-10035706 None:intergenic 55.0%
TGCGTGCAGTCACAACCTTG+TGG + chr2_1:10035705-10035724 Msa0194170:intron 55.0%
CTAGGGGAAGACCGCAGTTA+AGG - chr2_1:10035822-10035841 None:intergenic 55.0%
CCCGCAATTTAGGCGACTAG+GGG - chr2_1:10035838-10035857 None:intergenic 55.0%
CCCCTAGTCGCCTAAATTGC+GGG + chr2_1:10035835-10035854 Msa0194170:intron 55.0%
GCCCGCAATTTAGGCGACTA+GGG - chr2_1:10035839-10035858 None:intergenic 55.0%
AGCCCGCAATTTAGGCGACT+AGG - chr2_1:10035840-10035859 None:intergenic 55.0%
GTCGCCTAAATTGCGGGCTT+TGG + chr2_1:10035841-10035860 Msa0194170:intron 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG - chr2_1:10035871-10035890 None:intergenic 55.0%
! TTGTGTTGCCTTTGAGGGGG+TGG + chr2_1:10035895-10035914 Msa0194170:intron 55.0%
GGCTAAATCCACCCCCTCAA+AGG - chr2_1:10035906-10035925 None:intergenic 55.0%
! GGGTGGATTTAGCCCCACAT+CGG + chr2_1:10035912-10035931 Msa0194170:intron 55.0%
!! GGCTTTGAATCAGAGAGCCG+TGG + chr2_1:10036601-10036620 Msa0194170:CDS 55.0%
! AGGTAGGGCTGGTGTTCCCA+TGG + chr2_1:10034622-10034641 Msa0194170:intron 60.0%
! TAGGGCTGGTGTTCCCATGG+AGG + chr2_1:10034625-10034644 Msa0194170:CDS 60.0%
GTTGGCTGCATGCAGCCACA+AGG - chr2_1:10035723-10035742 None:intergenic 60.0%
GGGGAAGACCGCAGTTAAGG+CGG - chr2_1:10035819-10035838 None:intergenic 60.0%
GAGAGCCGTGGCTGTAGTTG+TGG + chr2_1:10036613-10036632 Msa0194170:CDS 60.0%
GCAGGTGCAGGTGGAGCCCT+AGG + chr2_1:10034342-10034361 Msa0194170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10034178 10037535 10034178 ID=Msa0194170;Name=Msa0194170
chr2_1 mRNA 10034178 10037535 10034178 ID=Msa0194170-mRNA-1;Parent=Msa0194170;Name=Msa0194170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=140|0.5|0.6|1|1|1|5|0|256
chr2_1 exon 10034178 10034450 10034178 ID=Msa0194170-mRNA-1:exon:4558;Parent=Msa0194170-mRNA-1
chr2_1 exon 10034624 10034757 10034624 ID=Msa0194170-mRNA-1:exon:4559;Parent=Msa0194170-mRNA-1
chr2_1 exon 10036593 10036769 10036593 ID=Msa0194170-mRNA-1:exon:4560;Parent=Msa0194170-mRNA-1
chr2_1 exon 10036880 10037047 10036880 ID=Msa0194170-mRNA-1:exon:4561;Parent=Msa0194170-mRNA-1
chr2_1 exon 10037377 10037535 10037377 ID=Msa0194170-mRNA-1:exon:4562;Parent=Msa0194170-mRNA-1
chr2_1 five_prime_UTR 10034178 10034317 10034178 ID=Msa0194170-mRNA-1:five_prime_utr;Parent=Msa0194170-mRNA-1
chr2_1 CDS 10034318 10034450 10034318 ID=Msa0194170-mRNA-1:cds;Parent=Msa0194170-mRNA-1
chr2_1 CDS 10034624 10034757 10034624 ID=Msa0194170-mRNA-1:cds;Parent=Msa0194170-mRNA-1
chr2_1 CDS 10036593 10036769 10036593 ID=Msa0194170-mRNA-1:cds;Parent=Msa0194170-mRNA-1
chr2_1 CDS 10036880 10037047 10036880 ID=Msa0194170-mRNA-1:cds;Parent=Msa0194170-mRNA-1
chr2_1 CDS 10037377 10037535 10037377 ID=Msa0194170-mRNA-1:cds;Parent=Msa0194170-mRNA-1
Gene Sequence

>Msa0194170

ATGGAAAGGCTTCAAAGAATGTTCGCAGGTGCAGGTGGAGCCCTAGGTCATCCACCACCAGATTCTCCAACCCTAGATTCATCCGAACAAGTCTACATCTCATCCCTCGCTCTTCTCAAGATGCTTAAACACGGTAGGGCTGGTGTTCCCATGGAGGTTATGGGTTTGATGCTTGGAGAATTTGTGGATGAGTATACAGTTCGTGTTGTTGATGTGTTTGCAATGCCACAGAGTGGAACTGGTGTTAGTGTTGAAGCTGTTGATCATAGTTTTGAGGCTTTGAATCAGAGAGCCGTGGCTGTAGTTGTGGATCCAATTCAAAGTGTTAAAGGAAAGGTGGTGATTGATGCTTTTCGATTGATCAATCCACAGACAATGATGCTTGGACAAGAACCAAGGCAGACAACTTCCAATCTGGGACATCTGAATAAACCATCCATTCAGGCATTGATCCATGGGTTGAACCGGCATTATTATTCCATAGCCATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGCTGCTTAATCTTCACAAAAAGAAATGGACTGATGGCTTGACACTTAGGCGATTTGATACACATTCCAAAACTAATGAACAGACTGTTCAGGCTGTTCAAGAGGAAGATGAGCTGACACCCGAGAAACTTGCAATAGCAAATGTTGGAAGACAAGATGCCAAGAAGCACCTCGAAGAGCATGTCTCAAATTTGATGTCTTCTAACATCGTTCAAACTCTTGGAATGATGCTTGATACTGTTGTCTTCTAG

Protein sequence

>Msa0194170

MERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQAVQEEDELTPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*