Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087350 | KAB5526725.1 | 80.203 | 394 | 37 | 5 | 1 | 378 | 1 | 369 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087350 | sp|Q9LT08|PSDE_ARATH | 70.370 | 378 | 42 | 5 | 1 | 378 | 1 | 308 | 1.07e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087350 | A0A5N5KAY2 | 80.203 | 394 | 37 | 5 | 1 | 378 | 1 | 369 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047640 | Msa1087350 | 0.827671 | 1.375415e-54 | -8.615850e-47 |
| Msa0608270 | Msa1087350 | 0.842962 | 1.876592e-58 | -8.615850e-47 |
| Msa0648830 | Msa1087350 | 0.843384 | 1.448477e-58 | -8.615850e-47 |
| Msa0705390 | Msa1087350 | 0.806132 | 9.543196e-50 | -8.615850e-47 |
| Msa0127850 | Msa1087350 | 0.809006 | 2.341994e-50 | -8.615850e-47 |
| Msa0194170 | Msa1087350 | 0.800105 | 1.684376e-48 | -8.615850e-47 |
| Msa0430060 | Msa1087350 | 0.824862 | 6.411589e-54 | -8.615850e-47 |
| Msa0430150 | Msa1087350 | 0.821380 | 4.163863e-53 | -8.615850e-47 |
| Msa1074110 | Msa1087350 | 0.800332 | 1.514658e-48 | -8.615850e-47 |
| Msa1087350 | Msa1258780 | 0.828238 | 1.004753e-54 | -8.615850e-47 |
| Msa1087350 | Msa1330270 | 0.834393 | 3.076662e-56 | -8.615850e-47 |
| Msa1087350 | Msa1369890 | 0.824914 | 6.234221e-54 | -8.615850e-47 |
| Msa0245430 | Msa1087350 | 0.801777 | 7.673560e-49 | -8.615850e-47 |
| Msa0274230 | Msa1087350 | 0.876519 | 1.309154e-68 | -8.615850e-47 |
| Msa0314420 | Msa1087350 | 0.896318 | 4.139916e-76 | -8.615850e-47 |
| Msa0544730 | Msa1087350 | 0.843873 | 1.072124e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087350 | MtrunA17_Chr2g0284651 | 100.000 | 178 | 0 | 0 | 201 | 378 | 132 | 309 | 4.78e-126 | 365 |
| Msa1087350 | MtrunA17_Chr2g0284651 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 2.02e-94 | 284 |
| Msa1087350 | MtrunA17_Chr1g0153761 | 98.876 | 178 | 2 | 0 | 201 | 378 | 136 | 313 | 6.97e-125 | 362 |
| Msa1087350 | MtrunA17_Chr1g0153761 | 96.350 | 137 | 4 | 1 | 1 | 136 | 4 | 140 | 2.58e-92 | 279 |
| Msa1087350 | MtrunA17_Chr8g0334331 | 52.381 | 105 | 45 | 3 | 29 | 130 | 58 | 160 | 7.01e-26 | 107 |
| Msa1087350 | MtrunA17_Chr3g0138921 | 52.381 | 105 | 45 | 3 | 29 | 130 | 92 | 194 | 1.36e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087350 | AT5G23540.1 | 70.370 | 378 | 42 | 5 | 1 | 378 | 1 | 308 | 0.0 | 506 |
| Msa1087350 | AT5G23540.2 | 67.683 | 328 | 37 | 4 | 51 | 378 | 1 | 259 | 9.94e-148 | 418 |
| Msa1087350 | AT1G71230.1 | 50.450 | 111 | 42 | 3 | 29 | 132 | 57 | 161 | 3.98e-26 | 108 |
| Msa1087350 | AT1G22920.1 | 49.038 | 104 | 50 | 2 | 29 | 130 | 57 | 159 | 1.48e-24 | 103 |
| Msa1087350 | AT1G22920.2 | 49.038 | 104 | 50 | 2 | 29 | 130 | 57 | 159 | 1.70e-24 | 103 |
| Msa1087350 | AT5G27607.1 | 89.286 | 28 | 3 | 0 | 104 | 131 | 78 | 105 | 3.29e-12 | 63.5 |
Find 117 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGTTCCCATGGAGGTTA+TGG | 0.185250 | 7_3:+53955 | Msa1087350:CDS |
| AACAGTCTGTTCATTAGTTT+TGG | 0.224880 | 7_3:-56308 | None:intergenic |
| AACTTAGCACTTAGTTTCTT+TGG | 0.247885 | 7_3:+56966 | Msa1087350:three_prime_UTR |
| TTAGGTTGTTTGCTCGCTTA+TGG | 0.255350 | 7_3:+54943 | Msa1087350:intron |
| TTGAACAGCCTTGTTGTATT+TGG | 0.268596 | 7_3:-56650 | None:intergenic |
| AGAGTTCAAACTTGGTATTT+TGG | 0.274285 | 7_3:+55102 | Msa1087350:CDS |
| TTGAATACAGATGTATTCTT+TGG | 0.283103 | 7_3:+56917 | Msa1087350:three_prime_UTR |
| GGTGTTCCCATGGAGGTTAT+GGG | 0.289500 | 7_3:+53956 | Msa1087350:CDS |
| GATCCAATTCAAAGTGTTAA+AGG | 0.297544 | 7_3:+55921 | Msa1087350:CDS |
| TAATTCTATTATTATATTGC+AGG | 0.300785 | 7_3:+57018 | Msa1087350:three_prime_UTR |
| TTCATTCTTCCTGTAATTGA+TGG | 0.301331 | 7_3:-56206 | None:intergenic |
| GGATTTGGCTGTTGGTTGTC+TGG | 0.310169 | 7_3:+54470 | Msa1087350:CDS |
| ATTCCATAGCCATCAATTAC+AGG | 0.318521 | 7_3:+56197 | Msa1087350:CDS |
| TTTCCTTTAACACTTTGAAT+TGG | 0.338465 | 7_3:-55924 | None:intergenic |
| TATCATTCACATCCTGGATT+TGG | 0.349236 | 7_3:+54455 | Msa1087350:CDS |
| AGACTTGTTCGGATGAATCT+AGG | 0.351262 | 7_3:-53714 | None:intergenic |
| ATGCTCTTCGAGGTGCTTCT+TGG | 0.355935 | 7_3:-56731 | None:intergenic |
| AGCCCAGATCCGATCTTCTT+GGG | 0.362520 | 7_3:-55007 | None:intergenic |
| GAATCTAGGGTTGGAGAATC+TGG | 0.362906 | 7_3:-53700 | None:intergenic |
| CTTGATATGCTCAAACAAAC+TGG | 0.363131 | 7_3:+54100 | Msa1087350:CDS |
| CAGCCCAGATCCGATCTTCT+TGG | 0.372753 | 7_3:-55008 | None:intergenic |
| TAATATTTCTATCTCTGATT+CGG | 0.376148 | 7_3:-53502 | None:intergenic |
| CTCTTTAGGCATTGATCCAT+GGG | 0.379104 | 7_3:+56158 | Msa1087350:intron |
| CTGGACCGTCTGTTCTTGAT+TGG | 0.383072 | 7_3:-55081 | None:intergenic |
| CACATCCTGGATTTGGCTGT+TGG | 0.391614 | 7_3:+54462 | Msa1087350:CDS |
| TCTAACATCGTTCAAACTCT+TGG | 0.396438 | 7_3:+56772 | Msa1087350:CDS |
| TCTGAATAAACCATCCATTC+AGG | 0.402001 | 7_3:+56034 | Msa1087350:CDS |
| AAGGCAGACAACTTCCAATC+TGG | 0.404764 | 7_3:+56007 | Msa1087350:CDS |
| TCTCTTTAGGCATTGATCCA+TGG | 0.408154 | 7_3:+56157 | Msa1087350:intron |
| TTCCCCAAGAAGATCGGATC+TGG | 0.411677 | 7_3:+55004 | Msa1087350:CDS |
| TTTGATGCTTGGAGAATTTG+TGG | 0.413116 | 7_3:+53979 | Msa1087350:CDS |
| ATTTGCTATTGCAAGTTTCT+CGG | 0.414356 | 7_3:-56692 | None:intergenic |
| AATATAGTCTGAGAATAATC+AGG | 0.430400 | 7_3:-56894 | None:intergenic |
| AGATTGGAAGTTGTCTGCCT+TGG | 0.433636 | 7_3:-56005 | None:intergenic |
| CTAGGGGAAGACCGCAGTTA+AGG | 0.438316 | 7_3:-55143 | None:intergenic |
| CATTGATCCATGGGTTGAAC+CGG | 0.440732 | 7_3:+56167 | Msa1087350:CDS |
| CAAAGAATGTTCGCAGGTGC+AGG | 0.448769 | 7_3:+53655 | Msa1087350:CDS |
| GGCTGGTATCATTCACATCC+TGG | 0.450530 | 7_3:+54449 | Msa1087350:CDS |
| GAGGTTATGGGTTTGATGCT+TGG | 0.451218 | 7_3:+53968 | Msa1087350:CDS |
| TTTGCTATTGCAAGTTTCTC+GGG | 0.452950 | 7_3:-56691 | None:intergenic |
| ATAGAAAACACGTTACATAA+AGG | 0.454862 | 7_3:+57070 | Msa1087350:three_prime_UTR |
| ATGGTTAATCTAGCATGTTA+AGG | 0.470634 | 7_3:+56842 | Msa1087350:three_prime_UTR |
| AGTATACCAGGTAATATCAA+TGG | 0.472239 | 7_3:-56994 | None:intergenic |
| AAGCATACAGTGCATACTAT+AGG | 0.475426 | 7_3:-54978 | None:intergenic |
| AATTTGAGACATGCTCTTCG+AGG | 0.480365 | 7_3:-56741 | None:intergenic |
| TGCAGACCAGAGATGGTTGT+TGG | 0.483028 | 7_3:+54428 | Msa1087350:intron |
| GCAATGCCACAGAGTGGAAC+TGG | 0.486016 | 7_3:+54034 | Msa1087350:CDS |
| CTTCCTGTAATTGATGGCTA+TGG | 0.489960 | 7_3:-56200 | None:intergenic |
| AACTAATGAACAGACTGTTC+AGG | 0.493790 | 7_3:+56312 | Msa1087350:CDS |
| TACCAGCCAACAACCATCTC+TGG | 0.496380 | 7_3:-54434 | None:intergenic |
| GGATGAGATGTAGACTTGTT+CGG | 0.496633 | 7_3:-53725 | None:intergenic |
| ATTCTTTGGACGAGCTGAAA+AGG | 0.501523 | 7_3:+56931 | Msa1087350:three_prime_UTR |
| TTTATTCAGATGTCCCAGAT+TGG | 0.501681 | 7_3:-56021 | None:intergenic |
| TGAATCGATGAATCTGTGTT+GGG | 0.502473 | 7_3:-53618 | None:intergenic |
| GCAGGTGCAGGTGGAGCCCT+AGG | 0.507158 | 7_3:+53667 | Msa1087350:CDS |
| AAACTTGCAATAGCAAATGT+TGG | 0.510302 | 7_3:+56697 | Msa1087350:CDS |
| GTGACTCCATTGATATTACC+TGG | 0.511607 | 7_3:+56988 | Msa1087350:three_prime_UTR |
| CTTAGTTTCCCCAAGAAGAT+CGG | 0.514901 | 7_3:+54998 | Msa1087350:CDS |
| GACTTGTTCGGATGAATCTA+GGG | 0.516752 | 7_3:-53713 | None:intergenic |
| GACAACCAACAGCCAAATCC+AGG | 0.516917 | 7_3:-54467 | None:intergenic |
| GTTTGAGTTACGCACCTGAA+TGG | 0.524957 | 7_3:-56048 | None:intergenic |
| ACCGTCTGTTCTTGATTGGA+CGG | 0.526631 | 7_3:-55077 | None:intergenic |
| GGACTGATGGCTTGACACTT+AGG | 0.529421 | 7_3:+56269 | Msa1087350:CDS |
| CATCAAACCCATAACCTCCA+TGG | 0.530750 | 7_3:-53963 | None:intergenic |
| GAGAGCCGTGGCTGTAGTTG+TGG | 0.532971 | 7_3:+55899 | Msa1087350:CDS |
| AATAATGCCGGTTCAACCCA+TGG | 0.533545 | 7_3:-56174 | None:intergenic |
| AAGTCGATGGCGAAGTAAAG+AGG | 0.542405 | 7_3:-53555 | None:intergenic |
| TTAACAATAATAGGTAGGGC+TGG | 0.544991 | 7_3:+53935 | Msa1087350:intron |
| AGGTAGGGCTGGTGTTCCCA+TGG | 0.547536 | 7_3:+53946 | Msa1087350:intron |
| AGGCAGACAACTTCCAATCT+GGG | 0.548081 | 7_3:+56008 | Msa1087350:CDS |
| GAGTTACGCACCTGAATGGA+TGG | 0.549238 | 7_3:-56044 | None:intergenic |
| AATCCTCAGACAATGATGCT+TGG | 0.552016 | 7_3:+55975 | Msa1087350:CDS |
| TGTTCGGATGAATCTAGGGT+TGG | 0.556841 | 7_3:-53709 | None:intergenic |
| ACAGATTCATCGATTCATCA+TGG | 0.557263 | 7_3:+53624 | Msa1087350:exon |
| GACCAGAGATGGTTGTTGGC+TGG | 0.560653 | 7_3:+54432 | Msa1087350:intron |
| AAAATACCAAGTTTGAACTC+TGG | 0.567421 | 7_3:-55100 | None:intergenic |
| GACGGTCCAGAGTTCAAACT+TGG | 0.572939 | 7_3:+55094 | Msa1087350:CDS |
| TCCCCAAGAAGATCGGATCT+GGG | 0.573423 | 7_3:+55005 | Msa1087350:CDS |
| ATGAATCGATGAATCTGTGT+TGG | 0.575503 | 7_3:-53619 | None:intergenic |
| TGTCCAAGCATCATTGTCTG+AGG | 0.580557 | 7_3:-55978 | None:intergenic |
| AGAATGTTCGCAGGTGCAGG+TGG | 0.582287 | 7_3:+53658 | Msa1087350:CDS |
| AGGGTTGGAGAATCTGGTGG+TGG | 0.583084 | 7_3:-53694 | None:intergenic |
| AATCTGGTGGTGGATGACCT+AGG | 0.583160 | 7_3:-53684 | None:intergenic |
| ATCAAACCCATAACCTCCAT+GGG | 0.586388 | 7_3:-53962 | None:intergenic |
| AATTCAAAGTGTTAAAGGAA+AGG | 0.587669 | 7_3:+55926 | Msa1087350:CDS |
| ATCTGGTGGTGGATGACCTA+GGG | 0.587858 | 7_3:-53683 | None:intergenic |
| ATACAACAAGGCTGTTCAAG+AGG | 0.587968 | 7_3:+56654 | Msa1087350:CDS |
| ATTGTGTTGCAGACCAGAGA+TGG | 0.597906 | 7_3:+54421 | Msa1087350:intron |
| TAATAGAATTAAAGTATACC+AGG | 0.598716 | 7_3:-57006 | None:intergenic |
| TGGAAATTCCGCCTTAACTG+CGG | 0.605950 | 7_3:+55132 | Msa1087350:CDS |
| TTCATCGATTCATCATGGAA+AGG | 0.606178 | 7_3:+53629 | Msa1087350:exon |
| ATATGCTCAAACAAACTGGA+AGG | 0.606861 | 7_3:+54104 | Msa1087350:CDS |
| GCCCAGATCCGATCTTCTTG+GGG | 0.610918 | 7_3:-55006 | None:intergenic |
| TCAAAGTGTTAAAGGAAAGG+TGG | 0.613319 | 7_3:+55929 | Msa1087350:CDS |
| TGGCTATGGAATAATAATGC+CGG | 0.615459 | 7_3:-56186 | None:intergenic |
| AGGCTTCAAAGAATGTTCGC+AGG | 0.619756 | 7_3:+53649 | Msa1087350:CDS |
| TTGATTGGACGGTACATACG+TGG | 0.620140 | 7_3:-55066 | None:intergenic |
| AGTCGATGGCGAAGTAAAGA+GGG | 0.620664 | 7_3:-53554 | None:intergenic |
| TTGGACGGTACATACGTGGT+TGG | 0.623303 | 7_3:-55062 | None:intergenic |
| TAGGGCTGGTGTTCCCATGG+AGG | 0.627642 | 7_3:+53949 | Msa1087350:CDS |
| GGGGAAGACCGCAGTTAAGG+CGG | 0.628694 | 7_3:-55140 | None:intergenic |
| AAGCATCTTGAGAAGAGCGA+GGG | 0.629521 | 7_3:-53746 | None:intergenic |
| GGCTTTGAATCAGAGAGCCG+TGG | 0.631150 | 7_3:+55887 | Msa1087350:CDS |
| TGGATCCACAACTACAGCCA+CGG | 0.635765 | 7_3:-55904 | None:intergenic |
| CTTAGCTACCAAATACAACA+AGG | 0.639370 | 7_3:+56642 | Msa1087350:CDS |
| TGTTGACATCAATACACAGC+AGG | 0.639510 | 7_3:+54493 | Msa1087350:CDS |
| GTTGGCTGCATGCAGCCACA+AGG | 0.646321 | 7_3:-55044 | None:intergenic |
| TAAGCATCTTGAGAAGAGCG+AGG | 0.654674 | 7_3:-53747 | None:intergenic |
| TGCGTGCAGTCACAACCTTG+TGG | 0.656939 | 7_3:+55029 | Msa1087350:CDS |
| ACCGTCCAATCAAGAACAGA+CGG | 0.660489 | 7_3:+55076 | Msa1087350:CDS |
| TTACAGGAAGAATGAACTCG+AGG | 0.664198 | 7_3:+56213 | Msa1087350:CDS |
| GAATCGATGAATCTGTGTTG+GGG | 0.664991 | 7_3:-53617 | None:intergenic |
| CTTCTCAAGATGCTTAAACA+CGG | 0.678967 | 7_3:+53754 | Msa1087350:CDS |
| TCTAGGGTTGGAGAATCTGG+TGG | 0.686607 | 7_3:-53697 | None:intergenic |
| CTAACACCAGTTCCACTCTG+TGG | 0.696288 | 7_3:-54040 | None:intergenic |
| TGATGCTTGGACAAGAACCA+AGG | 0.701272 | 7_3:+55988 | Msa1087350:CDS |
| GTGTTTGCAATGCCACAGAG+TGG | 0.719761 | 7_3:+54028 | Msa1087350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTTTAAAAAAATAAAAT+CGG | + | chr7_3:55327-55346 | Msa1087350:intron | 10.0% |
| !!! | GTGTTTTTTTTAACAATAAT+AGG | + | chr7_3:53926-53945 | Msa1087350:intron | 15.0% |
| !!! | TTTTTTTAACAATAATAGGT+AGG | + | chr7_3:53930-53949 | Msa1087350:intron | 15.0% |
| !!! | TTTTTTAACAATAATAGGTA+GGG | + | chr7_3:53931-53950 | Msa1087350:intron | 15.0% |
| !! | AGTTATTAATTTACTTTCAA+TGG | + | chr7_3:54644-54663 | Msa1087350:intron | 15.0% |
| !! | AAATGAGTTTGATTAATTTA+AGG | + | chr7_3:55458-55477 | Msa1087350:intron | 15.0% |
| !!! | TAAGATTTTCATTCATTAAA+TGG | - | chr7_3:55578-55597 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGATGTATTATTT+TGG | + | chr7_3:56099-56118 | Msa1087350:intron | 15.0% |
| !! | TAATTCTATTATTATATTGC+AGG | + | chr7_3:57018-57037 | Msa1087350:three_prime_UTR | 15.0% |
| !!! | TTTTTAACTTCATCAAATCA+TGG | + | chr7_3:53870-53889 | Msa1087350:intron | 20.0% |
| !!! | TTTTAACTTCATCAAATCAT+GGG | + | chr7_3:53871-53890 | Msa1087350:intron | 20.0% |
| !! | GGTATTTCAATTTCAAAATT+AGG | + | chr7_3:53892-53911 | Msa1087350:intron | 20.0% |
| !!! | TATTATAATTTTTGACGACA+TGG | + | chr7_3:54615-54634 | Msa1087350:intron | 20.0% |
| !! | TTTAAAAGCTGTTGAAATTT+GGG | - | chr7_3:55317-55336 | None:intergenic | 20.0% |
| !!! | TTTTAAAAGCTGTTGAAATT+TGG | - | chr7_3:55318-55337 | None:intergenic | 20.0% |
| !!! | AGTTGTAATCTTGTTTTTAA+AGG | + | chr7_3:55517-55536 | Msa1087350:intron | 20.0% |
| !!! | GTTGTAATCTTGTTTTTAAA+GGG | + | chr7_3:55518-55537 | Msa1087350:intron | 20.0% |
| !!! | AAGTCAATATTTTTTAAGCA+TGG | + | chr7_3:55620-55639 | Msa1087350:intron | 20.0% |
| !! | AATTTCAATTATCAAGACAA+TGG | - | chr7_3:55721-55740 | None:intergenic | 20.0% |
| !!! | ATCAACGTAATTCAAATTTT+TGG | - | chr7_3:55755-55774 | None:intergenic | 20.0% |
| !!! | ACTTGTTTCTAATTAGTTAT+TGG | + | chr7_3:55812-55831 | Msa1087350:intron | 20.0% |
| !!! | CGATATTCATACAATTTTTT+TGG | + | chr7_3:56085-56104 | Msa1087350:intron | 20.0% |
| !! | TTAATCTTCACAAAAAGAAA+TGG | + | chr7_3:56248-56267 | Msa1087350:CDS | 20.0% |
| !! | GTTTATTTGATTAATCAGAT+AGG | - | chr7_3:56379-56398 | None:intergenic | 20.0% |
| !!! | CCGTTTTTAAATCTAAAAAT+CGG | - | chr7_3:56423-56442 | None:intergenic | 20.0% |
| !!! | CCGATTTTTAGATTTAAAAA+CGG | + | chr7_3:56420-56439 | Msa1087350:intron | 20.0% |
| !!! | TCTCAATTAATTTGAAATGT+AGG | + | chr7_3:56609-56628 | Msa1087350:intron | 20.0% |
| !! | TAATAGAATTAAAGTATACC+AGG | - | chr7_3:57009-57028 | None:intergenic | 20.0% |
| ! | TCTTTAACCTAATCAAATCA+TGG | + | chr7_3:53788-53807 | Msa1087350:intron | 25.0% |
| ! | CTTTAACCTAATCAAATCAT+GGG | + | chr7_3:53789-53808 | Msa1087350:intron | 25.0% |
| ! | GCTATCCAATTTCATAATTA+GGG | + | chr7_3:53811-53830 | Msa1087350:intron | 25.0% |
| ! | CAAAACCCTAATTATGAAAT+TGG | - | chr7_3:53819-53838 | None:intergenic | 25.0% |
| !! | ATGCTAAGATTTGTTCATTT+AGG | + | chr7_3:54145-54164 | Msa1087350:intron | 25.0% |
| !! | TGCTAAGATTTGTTCATTTA+GGG | + | chr7_3:54146-54165 | Msa1087350:intron | 25.0% |
| ! | AACATGAATAACACAATGTT+TGG | - | chr7_3:54389-54408 | None:intergenic | 25.0% |
| !! | AATCCAAAGTATTTATGTGT+CGG | + | chr7_3:54562-54581 | Msa1087350:intron | 25.0% |
| ! | CACTAAAATCAAAACTATCT+AGG | - | chr7_3:54593-54612 | None:intergenic | 25.0% |
| ! | TTTCCAAAACAGAGTAAATT+AGG | - | chr7_3:54765-54784 | None:intergenic | 25.0% |
| ! | ATTATGATGAGACTGATAAT+AGG | - | chr7_3:54911-54930 | None:intergenic | 25.0% |
| ! | TTAAAAGCTGTTGAAATTTG+GGG | - | chr7_3:55316-55335 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTAAAGGGATTTT+AGG | + | chr7_3:55526-55545 | Msa1087350:intron | 25.0% |
| !! | TCATAACTGTTAGATTTTGT+CGG | + | chr7_3:55550-55569 | Msa1087350:intron | 25.0% |
| !!! | TATTGACTTTCTAAGAAATC+AGG | - | chr7_3:55609-55628 | None:intergenic | 25.0% |
| !! | AAAATATTTTCCGTTATCAG+TGG | + | chr7_3:55688-55707 | Msa1087350:intron | 25.0% |
| ! | GTTTCTAATTAGTTATTGGT+TGG | + | chr7_3:55816-55835 | Msa1087350:intron | 25.0% |
| ! | TTTCCTTTAACACTTTGAAT+TGG | - | chr7_3:55927-55946 | None:intergenic | 25.0% |
| !! | AATTCAAAGTGTTAAAGGAA+AGG | + | chr7_3:55926-55945 | Msa1087350:CDS | 25.0% |
| ! | TATAAGTTTCATAAGCTTTC+AGG | + | chr7_3:56538-56557 | Msa1087350:intron | 25.0% |
| ! | ATAAGTTTCATAAGCTTTCA+GGG | + | chr7_3:56539-56558 | Msa1087350:intron | 25.0% |
| ! | TTGAGATCTATTAGTATCTA+GGG | - | chr7_3:56595-56614 | None:intergenic | 25.0% |
| ! | ATTGAGATCTATTAGTATCT+AGG | - | chr7_3:56596-56615 | None:intergenic | 25.0% |
| ! | AATATAGTCTGAGAATAATC+AGG | - | chr7_3:56897-56916 | None:intergenic | 25.0% |
| ! | TTGAATACAGATGTATTCTT+TGG | + | chr7_3:56917-56936 | Msa1087350:three_prime_UTR | 25.0% |
| !! | TTTATGTAACGTGTTTTCTA+TGG | - | chr7_3:57071-57090 | None:intergenic | 25.0% |
| ! | ATAGAAAACACGTTACATAA+AGG | + | chr7_3:57070-57089 | Msa1087350:three_prime_UTR | 25.0% |
| !!! | ATTTTTGAAGTTGAAGTCGA+TGG | - | chr7_3:53571-53590 | None:intergenic | 30.0% |
| GGCTATCCAATTTCATAATT+AGG | + | chr7_3:53810-53829 | Msa1087350:intron | 30.0% | |
| ! | TAAGATTTGTTCATTTAGGG+TGG | + | chr7_3:54149-54168 | Msa1087350:intron | 30.0% |
| TAAACACTTGTTTGAGCTTA+TGG | + | chr7_3:54201-54220 | Msa1087350:intron | 30.0% | |
| TTCATGGCATCATTCATAAA+CGG | + | chr7_3:54230-54249 | Msa1087350:intron | 30.0% | |
| ATATAAGCACTTATGTGACA+AGG | + | chr7_3:54344-54363 | Msa1087350:intron | 30.0% | |
| TATAAGCACTTATGTGACAA+GGG | + | chr7_3:54345-54364 | Msa1087350:intron | 30.0% | |
| GATACAGAAACAAGACATAA+AGG | - | chr7_3:54531-54550 | None:intergenic | 30.0% | |
| GACACATAAATACTTTGGAT+TGG | - | chr7_3:54563-54582 | None:intergenic | 30.0% | |
| ! | TAATTTTTGACGACATGGTT+TGG | + | chr7_3:54620-54639 | Msa1087350:intron | 30.0% |
| ! | ATTTTGCTGAACACTCTTTT+TGG | + | chr7_3:54737-54756 | Msa1087350:intron | 30.0% |
| ! | GTTCCTAATTTACTCTGTTT+TGG | + | chr7_3:54759-54778 | Msa1087350:intron | 30.0% |
| !!! | TCTGTTTTGGAAAAGTTTTG+TGG | + | chr7_3:54772-54791 | Msa1087350:intron | 30.0% |
| GTGGAAAGAACATTAGTTAA+TGG | + | chr7_3:54791-54810 | Msa1087350:intron | 30.0% | |
| AAAATACCAAGTTTGAACTC+TGG | - | chr7_3:55103-55122 | None:intergenic | 30.0% | |
| ! | AGAGTTCAAACTTGGTATTT+TGG | + | chr7_3:55102-55121 | Msa1087350:CDS | 30.0% |
| CTAATTCATCCTTACAAAAC+CGG | - | chr7_3:55292-55311 | None:intergenic | 30.0% | |
| ! | ATAAAATCGGCATTGAAATC+TGG | + | chr7_3:55340-55359 | Msa1087350:intron | 30.0% |
| AAACAAGATTACAACTGCAA+TGG | - | chr7_3:55513-55532 | None:intergenic | 30.0% | |
| ! | CATAACTGTTAGATTTTGTC+GGG | + | chr7_3:55551-55570 | Msa1087350:intron | 30.0% |
| ! | ATAACTGTTAGATTTTGTCG+GGG | + | chr7_3:55552-55571 | Msa1087350:intron | 30.0% |
| ! | ATTAAGAGCTCCTTATTTGA+GGG | - | chr7_3:55660-55679 | None:intergenic | 30.0% |
| ! | GTTGATCGAAGTTTTCATTT+AGG | + | chr7_3:55769-55788 | Msa1087350:intron | 30.0% |
| ! | AAGTTTTCATTTAGGTCTAG+TGG | + | chr7_3:55777-55796 | Msa1087350:intron | 30.0% |
| ! | GATCCAATTCAAAGTGTTAA+AGG | + | chr7_3:55921-55940 | Msa1087350:CDS | 30.0% |
| GTATCATATTACCTCTCTTT+AGG | + | chr7_3:56144-56163 | Msa1087350:intron | 30.0% | |
| TTCATTCTTCCTGTAATTGA+TGG | - | chr7_3:56209-56228 | None:intergenic | 30.0% | |
| !! | AACAGTCTGTTCATTAGTTT+TGG | - | chr7_3:56311-56330 | None:intergenic | 30.0% |
| TTGATTAATCAGATAGGCAA+CGG | - | chr7_3:56373-56392 | None:intergenic | 30.0% | |
| !! | ATTTGCTATTGCAAGTTTCT+CGG | - | chr7_3:56695-56714 | None:intergenic | 30.0% |
| AAACTTGCAATAGCAAATGT+TGG | + | chr7_3:56697-56716 | Msa1087350:CDS | 30.0% | |
| !!! | AGTTGTCTTTTTGGAACTTA+TGG | + | chr7_3:56823-56842 | Msa1087350:three_prime_UTR | 30.0% |
| ATGGTTAATCTAGCATGTTA+AGG | + | chr7_3:56842-56861 | Msa1087350:three_prime_UTR | 30.0% | |
| AACTTAGCACTTAGTTTCTT+TGG | + | chr7_3:56966-56985 | Msa1087350:three_prime_UTR | 30.0% | |
| AGTATACCAGGTAATATCAA+TGG | - | chr7_3:56997-57016 | None:intergenic | 30.0% | |
| ! | TATTGCAGGATTTTATGTTC+AGG | + | chr7_3:57032-57051 | Msa1087350:three_prime_UTR | 30.0% |
| TGAATCGATGAATCTGTGTT+GGG | - | chr7_3:53621-53640 | None:intergenic | 35.0% | |
| ATGAATCGATGAATCTGTGT+TGG | - | chr7_3:53622-53641 | None:intergenic | 35.0% | |
| !! | ACAGATTCATCGATTCATCA+TGG | + | chr7_3:53624-53643 | Msa1087350:exon | 35.0% |
| !! | TTCATCGATTCATCATGGAA+AGG | + | chr7_3:53629-53648 | Msa1087350:exon | 35.0% |
| CTTCTCAAGATGCTTAAACA+CGG | + | chr7_3:53754-53773 | Msa1087350:CDS | 35.0% | |
| TTAACAATAATAGGTAGGGC+TGG | + | chr7_3:53935-53954 | Msa1087350:intron | 35.0% | |
| TTTGATGCTTGGAGAATTTG+TGG | + | chr7_3:53979-53998 | Msa1087350:CDS | 35.0% | |
| CTTGATATGCTCAAACAAAC+TGG | + | chr7_3:54100-54119 | Msa1087350:CDS | 35.0% | |
| ATATGCTCAAACAAACTGGA+AGG | + | chr7_3:54104-54123 | Msa1087350:CDS | 35.0% | |
| GAGCTTATGGAAATAGTTCA+TGG | + | chr7_3:54214-54233 | Msa1087350:intron | 35.0% | |
| TATCATTCACATCCTGGATT+TGG | + | chr7_3:54455-54474 | Msa1087350:CDS | 35.0% | |
| CAACCGACACATAAATACTT+TGG | - | chr7_3:54568-54587 | None:intergenic | 35.0% | |
| ATTCACGTCAAAGAGATTCA+CGG | - | chr7_3:54677-54696 | None:intergenic | 35.0% | |
| ! | GATATGAGGATTGGTATAGT+GGG | - | chr7_3:54867-54886 | None:intergenic | 35.0% |
| AGTTGTTACGATATGAGGAT+TGG | - | chr7_3:54876-54895 | None:intergenic | 35.0% | |
| AAGCATACAGTGCATACTAT+AGG | - | chr7_3:54981-55000 | None:intergenic | 35.0% | |
| !!! | CTTGGTATTTTGGCTTTTGT+TGG | + | chr7_3:55112-55131 | Msa1087350:CDS | 35.0% |
| !! | CGGTTTTGTAAGGATGAATT+AGG | + | chr7_3:55290-55309 | Msa1087350:intron | 35.0% |
| ! | GATTAAGAGCTCCTTATTTG+AGG | - | chr7_3:55661-55680 | None:intergenic | 35.0% |
| !! | TGGTTTGTTTCCACTGATAA+CGG | - | chr7_3:55701-55720 | None:intergenic | 35.0% |
| ! | TCAAAGTGTTAAAGGAAAGG+TGG | + | chr7_3:55929-55948 | Msa1087350:CDS | 35.0% |
| TTTATTCAGATGTCCCAGAT+TGG | - | chr7_3:56024-56043 | None:intergenic | 35.0% | |
| TCTGAATAAACCATCCATTC+AGG | + | chr7_3:56034-56053 | Msa1087350:CDS | 35.0% | |
| TGGCTATGGAATAATAATGC+CGG | - | chr7_3:56189-56208 | None:intergenic | 35.0% | |
| ATTCCATAGCCATCAATTAC+AGG | + | chr7_3:56197-56216 | Msa1087350:CDS | 35.0% | |
| !! | CACAAAAAGAAATGGACTGA+TGG | + | chr7_3:56256-56275 | Msa1087350:CDS | 35.0% |
| AACTAATGAACAGACTGTTC+AGG | + | chr7_3:56312-56331 | Msa1087350:CDS | 35.0% | |
| CTTAGCTACCAAATACAACA+AGG | + | chr7_3:56642-56661 | Msa1087350:CDS | 35.0% | |
| !! | TTGAACAGCCTTGTTGTATT+TGG | - | chr7_3:56653-56672 | None:intergenic | 35.0% |
| !! | TTTGCTATTGCAAGTTTCTC+GGG | - | chr7_3:56694-56713 | None:intergenic | 35.0% |
| TCTAACATCGTTCAAACTCT+TGG | + | chr7_3:56772-56791 | Msa1087350:CDS | 35.0% | |
| !!! | GTCTTCTAGAGTTGTCTTTT+TGG | + | chr7_3:56814-56833 | Msa1087350:exon | 35.0% |
| GAATCGATGAATCTGTGTTG+GGG | - | chr7_3:53620-53639 | None:intergenic | 40.0% | |
| ! | GACTTGTTCGGATGAATCTA+GGG | - | chr7_3:53716-53735 | None:intergenic | 40.0% |
| ! | AGACTTGTTCGGATGAATCT+AGG | - | chr7_3:53717-53736 | None:intergenic | 40.0% |
| ! | GGATGAGATGTAGACTTGTT+CGG | - | chr7_3:53728-53747 | None:intergenic | 40.0% |
| GGATAGCCCATGATTTGATT+AGG | - | chr7_3:53798-53817 | None:intergenic | 40.0% | |
| ATCAAACCCATAACCTCCAT+GGG | - | chr7_3:53965-53984 | None:intergenic | 40.0% | |
| TGTTGACATCAATACACAGC+AGG | + | chr7_3:54493-54512 | Msa1087350:CDS | 40.0% | |
| ATACACAGCAGGTTCTACTA+TGG | + | chr7_3:54504-54523 | Msa1087350:intron | 40.0% | |
| !! | TATAGTGGGTTGGCAAAGTT+GGG | - | chr7_3:54853-54872 | None:intergenic | 40.0% |
| ! | CGATATGAGGATTGGTATAG+TGG | - | chr7_3:54868-54887 | None:intergenic | 40.0% |
| GTCAGAGTTGTTACGATATG+AGG | - | chr7_3:54881-54900 | None:intergenic | 40.0% | |
| CATAATAGCCACTGTGACTT+AGG | + | chr7_3:54925-54944 | Msa1087350:intron | 40.0% | |
| ! | TTAGGTTGTTTGCTCGCTTA+TGG | + | chr7_3:54943-54962 | Msa1087350:intron | 40.0% |
| CTTAGTTTCCCCAAGAAGAT+CGG | + | chr7_3:54998-55017 | Msa1087350:CDS | 40.0% | |
| CTTCATTGTGTTGCCTTTGA+GGG | + | chr7_3:55214-55233 | Msa1087350:intron | 40.0% | |
| TTCATTGTGTTGCCTTTGAG+GGG | + | chr7_3:55215-55234 | Msa1087350:intron | 40.0% | |
| CATTGAAATCTGGATCACCA+AGG | + | chr7_3:55350-55369 | Msa1087350:intron | 40.0% | |
| AGAATACTTTGCACGCTGTT+TGG | - | chr7_3:55408-55427 | None:intergenic | 40.0% | |
| AGATTACAACTGCAATGGAC+CGG | - | chr7_3:55508-55527 | None:intergenic | 40.0% | |
| AATCCTCAGACAATGATGCT+TGG | + | chr7_3:55975-55994 | Msa1087350:CDS | 40.0% | |
| ATGGATCAATGCCTAAAGAG+AGG | - | chr7_3:56158-56177 | None:intergenic | 40.0% | |
| !! | TCTCTTTAGGCATTGATCCA+TGG | + | chr7_3:56157-56176 | Msa1087350:intron | 40.0% |
| !! | CTCTTTAGGCATTGATCCAT+GGG | + | chr7_3:56158-56177 | Msa1087350:intron | 40.0% |
| ! | CTTCCTGTAATTGATGGCTA+TGG | - | chr7_3:56203-56222 | None:intergenic | 40.0% |
| TTACAGGAAGAATGAACTCG+AGG | + | chr7_3:56213-56232 | Msa1087350:CDS | 40.0% | |
| TTAAGATGCAGCGTGTAATG+TGG | + | chr7_3:56340-56359 | Msa1087350:intron | 40.0% | |
| TAAGATGCAGCGTGTAATGT+GGG | + | chr7_3:56341-56360 | Msa1087350:intron | 40.0% | |
| AAGCTTTCAGGGAGAACTTA+TGG | + | chr7_3:56550-56569 | Msa1087350:intron | 40.0% | |
| ATACAACAAGGCTGTTCAAG+AGG | + | chr7_3:56654-56673 | Msa1087350:CDS | 40.0% | |
| ! | AATTTGAGACATGCTCTTCG+AGG | - | chr7_3:56744-56763 | None:intergenic | 40.0% |
| ATTCTTTGGACGAGCTGAAA+AGG | + | chr7_3:56931-56950 | Msa1087350:three_prime_UTR | 40.0% | |
| GTGACTCCATTGATATTACC+TGG | + | chr7_3:56988-57007 | Msa1087350:three_prime_UTR | 40.0% | |
| AGTCGATGGCGAAGTAAAGA+GGG | - | chr7_3:53557-53576 | None:intergenic | 45.0% | |
| AAGTCGATGGCGAAGTAAAG+AGG | - | chr7_3:53558-53577 | None:intergenic | 45.0% | |
| AGGCTTCAAAGAATGTTCGC+AGG | + | chr7_3:53649-53668 | Msa1087350:CDS | 45.0% | |
| ! | GAATCTAGGGTTGGAGAATC+TGG | - | chr7_3:53703-53722 | None:intergenic | 45.0% |
| ! | TGTTCGGATGAATCTAGGGT+TGG | - | chr7_3:53712-53731 | None:intergenic | 45.0% |
| AAGCATCTTGAGAAGAGCGA+GGG | - | chr7_3:53749-53768 | None:intergenic | 45.0% | |
| TAAGCATCTTGAGAAGAGCG+AGG | - | chr7_3:53750-53769 | None:intergenic | 45.0% | |
| CATCAAACCCATAACCTCCA+TGG | - | chr7_3:53966-53985 | None:intergenic | 45.0% | |
| GAGGTTATGGGTTTGATGCT+TGG | + | chr7_3:53968-53987 | Msa1087350:CDS | 45.0% | |
| ATTGTGTTGCAGACCAGAGA+TGG | + | chr7_3:54421-54440 | Msa1087350:intron | 45.0% | |
| !! | GTATAGTGGGTTGGCAAAGT+TGG | - | chr7_3:54854-54873 | None:intergenic | 45.0% |
| !! | TGAGGATTGGTATAGTGGGT+TGG | - | chr7_3:54863-54882 | None:intergenic | 45.0% |
| GCAAACAACCTAAGTCACAG+TGG | - | chr7_3:54936-54955 | None:intergenic | 45.0% | |
| TTGATTGGACGGTACATACG+TGG | - | chr7_3:55069-55088 | None:intergenic | 45.0% | |
| ACCGTCCAATCAAGAACAGA+CGG | + | chr7_3:55076-55095 | Msa1087350:CDS | 45.0% | |
| ACCGTCTGTTCTTGATTGGA+CGG | - | chr7_3:55080-55099 | None:intergenic | 45.0% | |
| TGGAAATTCCGCCTTAACTG+CGG | + | chr7_3:55132-55151 | Msa1087350:CDS | 45.0% | |
| CAAACCAAAGCCCGCAATTT+AGG | - | chr7_3:55172-55191 | None:intergenic | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr7_3:55207-55226 | None:intergenic | 45.0% |
| ! | AGGCAACACAATGAAGGTGT+TGG | - | chr7_3:55210-55229 | None:intergenic | 45.0% |
| CCTCAAAGGCAACACAATGA+AGG | - | chr7_3:55216-55235 | None:intergenic | 45.0% | |
| CCTTCATTGTGTTGCCTTTG+AGG | + | chr7_3:55213-55232 | Msa1087350:intron | 45.0% | |
| ! | TCATTGTGTTGCCTTTGAGG+GGG | + | chr7_3:55216-55235 | Msa1087350:intron | 45.0% |
| TGTCCTATCTATCCGATGTG+GGG | - | chr7_3:55251-55270 | None:intergenic | 45.0% | |
| GTGTCCTATCTATCCGATGT+GGG | - | chr7_3:55252-55271 | None:intergenic | 45.0% | |
| TGTGTCCTATCTATCCGATG+TGG | - | chr7_3:55253-55272 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr7_3:55283-55302 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr7_3:55280-55299 | Msa1087350:intron | 45.0% |
| AAATCTGGATCACCAAGGTG+TGG | + | chr7_3:55355-55374 | Msa1087350:intron | 45.0% | |
| CTTTGCACGCTGTTTGGATT+GGG | - | chr7_3:55402-55421 | None:intergenic | 45.0% | |
| ACTTTGCACGCTGTTTGGAT+TGG | - | chr7_3:55403-55422 | None:intergenic | 45.0% | |
| CAGTACTCTCTCAGATAAGC+TGG | - | chr7_3:55436-55455 | None:intergenic | 45.0% | |
| ATCACCCATGCAAGTTATGC+CGG | + | chr7_3:55486-55505 | Msa1087350:intron | 45.0% | |
| CTTATTTGAGGGATCAGAGC+AGG | - | chr7_3:55649-55668 | None:intergenic | 45.0% | |
| CTGCTCTGATCCCTCAAATA+AGG | + | chr7_3:55647-55666 | Msa1087350:intron | 45.0% | |
| !! | TAGTTATTGGTTGGTGCTGC+TGG | + | chr7_3:55825-55844 | Msa1087350:intron | 45.0% |
| TCAAAGCCTCAAAACTCTGC+AGG | - | chr7_3:55875-55894 | None:intergenic | 45.0% | |
| TGTCCAAGCATCATTGTCTG+AGG | - | chr7_3:55981-56000 | None:intergenic | 45.0% | |
| TGATGCTTGGACAAGAACCA+AGG | + | chr7_3:55988-56007 | Msa1087350:CDS | 45.0% | |
| AGATTGGAAGTTGTCTGCCT+TGG | - | chr7_3:56008-56027 | None:intergenic | 45.0% | |
| AAGGCAGACAACTTCCAATC+TGG | + | chr7_3:56007-56026 | Msa1087350:CDS | 45.0% | |
| AGGCAGACAACTTCCAATCT+GGG | + | chr7_3:56008-56027 | Msa1087350:CDS | 45.0% | |
| ! | GTTTGAGTTACGCACCTGAA+TGG | - | chr7_3:56051-56070 | None:intergenic | 45.0% |
| ! | CATTGATCCATGGGTTGAAC+CGG | + | chr7_3:56167-56186 | Msa1087350:CDS | 45.0% |
| !! | AATAATGCCGGTTCAACCCA+TGG | - | chr7_3:56177-56196 | None:intergenic | 45.0% |
| CAAAGAATGTTCGCAGGTGC+AGG | + | chr7_3:53655-53674 | Msa1087350:CDS | 50.0% | |
| !! | ATCTGGTGGTGGATGACCTA+GGG | - | chr7_3:53686-53705 | None:intergenic | 50.0% |
| !! | AATCTGGTGGTGGATGACCT+AGG | - | chr7_3:53687-53706 | None:intergenic | 50.0% |
| ! | TCTAGGGTTGGAGAATCTGG+TGG | - | chr7_3:53700-53719 | None:intergenic | 50.0% |
| TGGTGTTCCCATGGAGGTTA+TGG | + | chr7_3:53955-53974 | Msa1087350:CDS | 50.0% | |
| GGTGTTCCCATGGAGGTTAT+GGG | + | chr7_3:53956-53975 | Msa1087350:CDS | 50.0% | |
| GTGTTTGCAATGCCACAGAG+TGG | + | chr7_3:54028-54047 | Msa1087350:CDS | 50.0% | |
| CTAACACCAGTTCCACTCTG+TGG | - | chr7_3:54043-54062 | None:intergenic | 50.0% | |
| TGCAGACCAGAGATGGTTGT+TGG | + | chr7_3:54428-54447 | Msa1087350:intron | 50.0% | |
| TACCAGCCAACAACCATCTC+TGG | - | chr7_3:54437-54456 | None:intergenic | 50.0% | |
| GGCTGGTATCATTCACATCC+TGG | + | chr7_3:54449-54468 | Msa1087350:CDS | 50.0% | |
| CACATCCTGGATTTGGCTGT+TGG | + | chr7_3:54462-54481 | Msa1087350:CDS | 50.0% | |
| GACAACCAACAGCCAAATCC+AGG | - | chr7_3:54470-54489 | None:intergenic | 50.0% | |
| ! | GGATTTGGCTGTTGGTTGTC+TGG | + | chr7_3:54470-54489 | Msa1087350:CDS | 50.0% |
| TTCCCCAAGAAGATCGGATC+TGG | + | chr7_3:55004-55023 | Msa1087350:CDS | 50.0% | |
| TCCCCAAGAAGATCGGATCT+GGG | + | chr7_3:55005-55024 | Msa1087350:CDS | 50.0% | |
| AGCCCAGATCCGATCTTCTT+GGG | - | chr7_3:55010-55029 | None:intergenic | 50.0% | |
| TTGGACGGTACATACGTGGT+TGG | - | chr7_3:55065-55084 | None:intergenic | 50.0% | |
| CTGGACCGTCTGTTCTTGAT+TGG | - | chr7_3:55084-55103 | None:intergenic | 50.0% | |
| GACGGTCCAGAGTTCAAACT+TGG | + | chr7_3:55094-55113 | Msa1087350:CDS | 50.0% | |
| TCCCCTAGTCGCCTAAATTG+CGG | + | chr7_3:55158-55177 | Msa1087350:intron | 50.0% | |
| TAGCCCCACATCGGATAGAT+AGG | + | chr7_3:55245-55264 | Msa1087350:intron | 50.0% | |
| ACACTCCTCACCTTACAAGC+CGG | + | chr7_3:55270-55289 | Msa1087350:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr7_3:55278-55297 | None:intergenic | 50.0% |
| AGTGTGACTGAACCACACCT+TGG | - | chr7_3:55370-55389 | None:intergenic | 50.0% | |
| ! | TGGACCGGCATAACTTGCAT+GGG | - | chr7_3:55493-55512 | None:intergenic | 50.0% |
| ! | ATGGACCGGCATAACTTGCA+TGG | - | chr7_3:55494-55513 | None:intergenic | 50.0% |
| ! | TCGTGTCCTGCAGAGTTTTG+AGG | + | chr7_3:55866-55885 | Msa1087350:intron | 50.0% |
| TGGATCCACAACTACAGCCA+CGG | - | chr7_3:55907-55926 | None:intergenic | 50.0% | |
| GAGTTACGCACCTGAATGGA+TGG | - | chr7_3:56047-56066 | None:intergenic | 50.0% | |
| GGACTGATGGCTTGACACTT+AGG | + | chr7_3:56269-56288 | Msa1087350:CDS | 50.0% | |
| ! | ATGCTCTTCGAGGTGCTTCT+TGG | - | chr7_3:56734-56753 | None:intergenic | 50.0% |
| AGAATGTTCGCAGGTGCAGG+TGG | + | chr7_3:53658-53677 | Msa1087350:CDS | 55.0% | |
| AGGGTTGGAGAATCTGGTGG+TGG | - | chr7_3:53697-53716 | None:intergenic | 55.0% | |
| GCAATGCCACAGAGTGGAAC+TGG | + | chr7_3:54034-54053 | Msa1087350:CDS | 55.0% | |
| GACCAGAGATGGTTGTTGGC+TGG | + | chr7_3:54432-54451 | Msa1087350:intron | 55.0% | |
| GCCCAGATCCGATCTTCTTG+GGG | - | chr7_3:55009-55028 | None:intergenic | 55.0% | |
| CAGCCCAGATCCGATCTTCT+TGG | - | chr7_3:55011-55030 | None:intergenic | 55.0% | |
| TGCGTGCAGTCACAACCTTG+TGG | + | chr7_3:55029-55048 | Msa1087350:CDS | 55.0% | |
| CTAGGGGAAGACCGCAGTTA+AGG | - | chr7_3:55146-55165 | None:intergenic | 55.0% | |
| CCCGCAATTTAGGCGACTAG+GGG | - | chr7_3:55162-55181 | None:intergenic | 55.0% | |
| CCCCTAGTCGCCTAAATTGC+GGG | + | chr7_3:55159-55178 | Msa1087350:intron | 55.0% | |
| GCCCGCAATTTAGGCGACTA+GGG | - | chr7_3:55163-55182 | None:intergenic | 55.0% | |
| AGCCCGCAATTTAGGCGACT+AGG | - | chr7_3:55164-55183 | None:intergenic | 55.0% | |
| GTCGCCTAAATTGCGGGCTT+TGG | + | chr7_3:55165-55184 | Msa1087350:intron | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr7_3:55195-55214 | None:intergenic | 55.0% |
| ! | TTGTGTTGCCTTTGAGGGGG+TGG | + | chr7_3:55219-55238 | Msa1087350:intron | 55.0% |
| GGCTAAATCCACCCCCTCAA+AGG | - | chr7_3:55230-55249 | None:intergenic | 55.0% | |
| ! | GGGTGGATTTAGCCCCACAT+CGG | + | chr7_3:55236-55255 | Msa1087350:intron | 55.0% |
| !! | GGCTTTGAATCAGAGAGCCG+TGG | + | chr7_3:55887-55906 | Msa1087350:CDS | 55.0% |
| ! | AGGTAGGGCTGGTGTTCCCA+TGG | + | chr7_3:53946-53965 | Msa1087350:intron | 60.0% |
| ! | TAGGGCTGGTGTTCCCATGG+AGG | + | chr7_3:53949-53968 | Msa1087350:CDS | 60.0% |
| GTTGGCTGCATGCAGCCACA+AGG | - | chr7_3:55047-55066 | None:intergenic | 60.0% | |
| GGGGAAGACCGCAGTTAAGG+CGG | - | chr7_3:55143-55162 | None:intergenic | 60.0% | |
| GAGAGCCGTGGCTGTAGTTG+TGG | + | chr7_3:55899-55918 | Msa1087350:CDS | 60.0% | |
| GCAGGTGCAGGTGGAGCCCT+AGG | + | chr7_3:53667-53686 | Msa1087350:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 53503 | 57102 | 53503 | ID=Msa1087350;Name=Msa1087350 |
| chr7_3 | mRNA | 53503 | 57102 | 53503 | ID=Msa1087350-mRNA-1;Parent=Msa1087350;Name=Msa1087350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=140|0.66|0.85|0.85|1|1|7|280|378 |
| chr7_3 | exon | 53503 | 53775 | 53503 | ID=Msa1087350-mRNA-1:exon:2;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 53948 | 54125 | 53948 | ID=Msa1087350-mRNA-1:exon:3;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 54433 | 54514 | 54433 | ID=Msa1087350-mRNA-1:exon:4;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 54947 | 55153 | 54947 | ID=Msa1087350-mRNA-1:exon:5;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 55879 | 56055 | 55879 | ID=Msa1087350-mRNA-1:exon:6;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 56166 | 56333 | 56166 | ID=Msa1087350-mRNA-1:exon:7;Parent=Msa1087350-mRNA-1 |
| chr7_3 | exon | 56631 | 57102 | 56631 | ID=Msa1087350-mRNA-1:exon:8;Parent=Msa1087350-mRNA-1 |
| chr7_3 | five_prime_UTR | 53503 | 53642 | 53503 | ID=Msa1087350-mRNA-1:five_prime_utr;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 53643 | 53775 | 53643 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 53948 | 54125 | 53948 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 54433 | 54514 | 54433 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 54947 | 55153 | 54947 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 55879 | 56055 | 55879 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 56166 | 56333 | 56166 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | CDS | 56631 | 56822 | 56631 | ID=Msa1087350-mRNA-1:cds;Parent=Msa1087350-mRNA-1 |
| chr7_3 | three_prime_UTR | 56823 | 57102 | 56823 | ID=Msa1087350-mRNA-1:three_prime_utr;Parent=Msa1087350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
