Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194200 | XP_003593807.1 | 97.279 | 294 | 8 | 0 | 1 | 294 | 1 | 294 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194200 | sp|Q8BX07|CTDS2_MOUSE | 34.457 | 267 | 149 | 5 | 36 | 277 | 4 | 269 | 3.70e-37 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194200 | G7ILM8 | 97.279 | 294 | 8 | 0 | 1 | 294 | 1 | 294 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077560 | Msa0194200 | 0.806129 | 9.557101e-50 | -8.615850e-47 |
| Msa0159590 | Msa0194200 | 0.801293 | 9.639750e-49 | -8.615850e-47 |
| Msa0194200 | Msa0269210 | 0.808201 | 3.479414e-50 | -8.615850e-47 |
| Msa0194200 | Msa0274320 | 0.929425 | 7.079159e-93 | -8.615850e-47 |
| Msa0194200 | Msa0368860 | 0.800733 | 1.254703e-48 | -8.615850e-47 |
| Msa0194200 | Msa0377710 | 0.816003 | 6.919011e-52 | -8.615850e-47 |
| Msa0194200 | Msa0481890 | 0.826885 | 2.121625e-54 | -8.615850e-47 |
| Msa0194200 | Msa0502510 | 0.809972 | 1.453024e-50 | -8.615850e-47 |
| Msa0194200 | Msa0511470 | 0.801281 | 9.693797e-49 | -8.615850e-47 |
| Msa0194200 | Msa0607800 | 0.805753 | 1.146336e-49 | -8.615850e-47 |
| Msa0194200 | Msa0709440 | 0.826666 | 2.393257e-54 | -8.615850e-47 |
| Msa0194200 | Msa0714520 | 0.838996 | 2.063237e-57 | -8.615850e-47 |
| Msa0194200 | Msa0743440 | 0.814463 | 1.521248e-51 | -8.615850e-47 |
| Msa0194200 | Msa0745720 | 0.805749 | 1.148857e-49 | -8.615850e-47 |
| Msa0194200 | Msa0867110 | 0.809069 | 2.270293e-50 | -8.615850e-47 |
| Msa0194200 | Msa0879920 | 0.800362 | 1.493774e-48 | -8.615850e-47 |
| Msa0194200 | Msa1084530 | 0.833176 | 6.196588e-56 | -8.615850e-47 |
| Msa0194200 | Msa1092420 | 0.809254 | 2.071867e-50 | -8.615850e-47 |
| Msa0194200 | Msa1125820 | 0.830945 | 2.206854e-55 | -8.615850e-47 |
| Msa0194200 | Msa1125990 | 0.828063 | 1.106895e-54 | -8.615850e-47 |
| Msa0194200 | Msa1127470 | 0.805841 | 1.098847e-49 | -8.615850e-47 |
| Msa0194200 | Msa1171290 | 0.827432 | 1.570066e-54 | -8.615850e-47 |
| Msa0194200 | Msa1300460 | 0.812504 | 4.101301e-51 | -8.615850e-47 |
| Msa0194200 | Msa1332950 | 0.824864 | 6.406787e-54 | -8.615850e-47 |
| Msa0194200 | Msa1362130 | 0.806463 | 8.125427e-50 | -8.615850e-47 |
| Msa0194200 | Msa1365500 | 0.807603 | 4.663729e-50 | -8.615850e-47 |
| Msa0194200 | Msa1366150 | 0.816250 | 6.092667e-52 | -8.615850e-47 |
| Msa0194200 | Msa1387440 | 0.826599 | 2.483308e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194200 | MtrunA17_Chr2g0284551 | 97.279 | 294 | 8 | 0 | 1 | 294 | 1 | 294 | 0.0 | 582 |
| Msa0194200 | MtrunA17_Chr5g0419741 | 37.714 | 175 | 103 | 2 | 101 | 274 | 123 | 292 | 1.66e-28 | 111 |
| Msa0194200 | MtrunA17_Chr3g0078241 | 41.143 | 175 | 99 | 3 | 98 | 269 | 284 | 457 | 7.67e-27 | 109 |
| Msa0194200 | MtrunA17_Chr2g0303951 | 36.325 | 234 | 138 | 5 | 54 | 280 | 240 | 469 | 5.44e-26 | 106 |
| Msa0194200 | MtrunA17_Chr3g0122541 | 40.972 | 144 | 83 | 2 | 109 | 251 | 280 | 422 | 1.34e-25 | 105 |
| Msa0194200 | MtrunA17_Chr3g0122521 | 37.086 | 151 | 93 | 2 | 102 | 251 | 12 | 161 | 1.10e-22 | 93.2 |
| Msa0194200 | MtrunA17_Chr3g0113611 | 38.217 | 157 | 78 | 4 | 106 | 243 | 70 | 226 | 2.56e-20 | 88.6 |
| Msa0194200 | MtrunA17_Chr5g0437111 | 37.580 | 157 | 79 | 4 | 106 | 243 | 96 | 252 | 5.03e-17 | 79.7 |
| Msa0194200 | MtrunA17_Chr5g0446321 | 31.210 | 157 | 89 | 2 | 91 | 244 | 172 | 312 | 9.23e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194200 | AT5G45700.1 | 43.110 | 283 | 147 | 6 | 1 | 280 | 1 | 272 | 2.77e-62 | 198 |
| Msa0194200 | AT1G29780.1 | 56.886 | 167 | 71 | 1 | 107 | 272 | 49 | 215 | 6.89e-59 | 188 |
| Msa0194200 | AT1G29770.1 | 52.000 | 175 | 82 | 2 | 107 | 279 | 102 | 276 | 7.00e-56 | 182 |
| Msa0194200 | AT5G11860.3 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 3.66e-27 | 107 |
| Msa0194200 | AT5G11860.5 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 3.66e-27 | 107 |
| Msa0194200 | AT5G11860.1 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 3.66e-27 | 107 |
| Msa0194200 | AT5G11860.4 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 3.66e-27 | 107 |
| Msa0194200 | AT5G11860.2 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 3.66e-27 | 107 |
| Msa0194200 | AT5G46410.2 | 39.884 | 173 | 102 | 2 | 109 | 280 | 285 | 456 | 3.63e-25 | 104 |
| Msa0194200 | AT5G46410.3 | 39.884 | 173 | 102 | 2 | 109 | 280 | 282 | 453 | 3.65e-25 | 104 |
| Msa0194200 | AT5G46410.1 | 39.884 | 173 | 102 | 2 | 109 | 280 | 282 | 453 | 3.65e-25 | 104 |
| Msa0194200 | AT4G18140.4 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.46e-23 | 100 |
| Msa0194200 | AT4G18140.6 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.46e-23 | 100 |
| Msa0194200 | AT4G18140.5 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.46e-23 | 100 |
| Msa0194200 | AT4G18140.1 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 4.25e-23 | 99.0 |
| Msa0194200 | AT4G18140.2 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 4.25e-23 | 99.0 |
| Msa0194200 | AT4G18140.3 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 6.06e-23 | 98.2 |
| Msa0194200 | AT1G55900.1 | 31.792 | 173 | 99 | 2 | 91 | 260 | 171 | 327 | 4.78e-19 | 86.7 |
| Msa0194200 | AT1G55900.2 | 31.792 | 173 | 99 | 2 | 91 | 260 | 171 | 327 | 4.93e-19 | 86.7 |
| Msa0194200 | AT3G55960.1 | 36.184 | 152 | 78 | 4 | 106 | 238 | 96 | 247 | 2.40e-16 | 78.2 |
Find 59 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAGCTTCTCACAAAAC+TGG | 0.265788 | 2_1:+10066625 | Msa0194200:CDS |
| AGGGAAGCTTGTGAAAGATT+TGG | 0.293676 | 2_1:+10067096 | Msa0194200:CDS |
| TTATTTCGCATCGGCTTTAT+AGG | 0.299291 | 2_1:+10067053 | Msa0194200:CDS |
| GGGAAGCTTGTGAAAGATTT+GGG | 0.307134 | 2_1:+10067097 | Msa0194200:CDS |
| GCTTAAGGAGTATGCGAGTT+TGG | 0.339130 | 2_1:+10067003 | Msa0194200:CDS |
| GGTTGATTCGAAAACGAAAC+TGG | 0.341731 | 2_1:-10067166 | None:intergenic |
| GTTAATGTCTTTGATTGATT+TGG | 0.348380 | 2_1:-10066519 | None:intergenic |
| TTCCACCTTCAATATCTAAT+CGG | 0.378188 | 2_1:+10066786 | Msa0194200:CDS |
| TATTTCGCATCGGCTTTATA+GGG | 0.378274 | 2_1:+10067054 | Msa0194200:CDS |
| GCCGCGACGACGTTCTTTAT+CGG | 0.415564 | 2_1:-10066566 | None:intergenic |
| TGGACCGGTTGGACCGGAAC+GGG | 0.415871 | 2_1:+10067029 | Msa0194200:CDS |
| ATGCTTGTGATCGTGAGCTT+TGG | 0.419497 | 2_1:+10067224 | Msa0194200:CDS |
| TTAATCAAAATCGCATTCTC+AGG | 0.423966 | 2_1:-10067187 | None:intergenic |
| GTAGTCCGGCCGGTGATTGA+TGG | 0.425963 | 2_1:+10066884 | Msa0194200:CDS |
| CTCGTCTCAGTTCTTCAAAT+CGG | 0.429741 | 2_1:+10066654 | Msa0194200:CDS |
| GATCTGATCAAAGGCGTGTC+TGG | 0.434592 | 2_1:+10067343 | Msa0194200:CDS |
| TCTTGATTTAGATGAAACTT+TGG | 0.436405 | 2_1:+10066820 | Msa0194200:CDS |
| TGTGGGAAGGGATTTGAAGA+AGG | 0.467439 | 2_1:+10067123 | Msa0194200:CDS |
| TAAACCCGTTCCGGTCCAAC+CGG | 0.468555 | 2_1:-10067033 | None:intergenic |
| GATGCGAAATAAACCCGTTC+CGG | 0.471268 | 2_1:-10067042 | None:intergenic |
| ACCGGGGATTGATGAATTGT+TGG | 0.482144 | 2_1:+10066937 | Msa0194200:CDS |
| GTGGACCGGTTGGACCGGAA+CGG | 0.486922 | 2_1:+10067028 | Msa0194200:CDS |
| CTTTGAAATGCGGCGGTGGA+TGG | 0.490657 | 2_1:-10066609 | None:intergenic |
| GGAGTATGCGAGTTTGGTTG+TGG | 0.507228 | 2_1:+10067009 | Msa0194200:CDS |
| TTCTACGTGTTGAAGCGACC+GGG | 0.513582 | 2_1:+10066920 | Msa0194200:CDS |
| TAGGGATTCGTGTAGGAATG+TGG | 0.519949 | 2_1:+10067072 | Msa0194200:CDS |
| AAATCAAATTTCTCCGGCGG+TGG | 0.522620 | 2_1:-10066860 | None:intergenic |
| TCACAAGCATCATCAACAAA+AGG | 0.529060 | 2_1:-10067211 | None:intergenic |
| AGCGTTGAAATATGAGGTGG+TGG | 0.529684 | 2_1:+10066967 | Msa0194200:CDS |
| CGTGAGCTTTGGAAATTGAG+AGG | 0.530120 | 2_1:+10067235 | Msa0194200:CDS |
| TTTCTACGTGTTGAAGCGAC+CGG | 0.530989 | 2_1:+10066919 | Msa0194200:CDS |
| TGGTTGTGGACCGGTTGGAC+CGG | 0.534625 | 2_1:+10067023 | Msa0194200:CDS |
| ATGCGAGTTTGGTTGTGGAC+CGG | 0.538407 | 2_1:+10067014 | Msa0194200:CDS |
| TCAAAGCTTCTCACAAAACT+GGG | 0.544321 | 2_1:+10066626 | Msa0194200:CDS |
| ACTACAAAATCAAATTTCTC+CGG | 0.568154 | 2_1:-10066866 | None:intergenic |
| GGAACGGGTTTATTTCGCAT+CGG | 0.571199 | 2_1:+10067044 | Msa0194200:CDS |
| GATTCGTGTAGGAATGTGGA+AGG | 0.572672 | 2_1:+10067076 | Msa0194200:CDS |
| AAGACATTAACCGTCGTCGT+TGG | 0.574857 | 2_1:+10066531 | Msa0194200:CDS |
| GAAGCTTTGAAATGCGGCGG+TGG | 0.579230 | 2_1:-10066613 | None:intergenic |
| TTGTGAGAAGCTTTGAAATG+CGG | 0.588582 | 2_1:-10066619 | None:intergenic |
| ATCGGTTCACCATCAATCAC+CGG | 0.589525 | 2_1:-10066893 | None:intergenic |
| TCCAACAATTCATCAATCCC+CGG | 0.590132 | 2_1:-10066938 | None:intergenic |
| TCTACGTGTTGAAGCGACCG+GGG | 0.598046 | 2_1:+10066921 | Msa0194200:CDS |
| GATGGAAGAAAGAACGGCGG+AGG | 0.608748 | 2_1:-10066591 | None:intergenic |
| TCCGATAAAGAACGTCGTCG+CGG | 0.612729 | 2_1:+10066565 | Msa0194200:CDS |
| TTCAACACGTAGAAATCCAT+CGG | 0.617017 | 2_1:-10066911 | None:intergenic |
| TCGTGTTCAGATCTGATCAA+AGG | 0.617362 | 2_1:+10067334 | Msa0194200:CDS |
| GGTGATTGATGGTGAACCGA+TGG | 0.621208 | 2_1:+10066895 | Msa0194200:CDS |
| GGCTTTATAGGGATTCGTGT+AGG | 0.622796 | 2_1:+10067065 | Msa0194200:CDS |
| GCGGTGGATGGAAGAAAGAA+CGG | 0.625468 | 2_1:-10066597 | None:intergenic |
| TTCCGATTAGATATTGAAGG+TGG | 0.632258 | 2_1:-10066788 | None:intergenic |
| AGCGTTAGCGTTGAAATATG+AGG | 0.636943 | 2_1:+10066961 | Msa0194200:CDS |
| GTTCACCATCAATCACCGGC+CGG | 0.662293 | 2_1:-10066889 | None:intergenic |
| TGAGAAGCTTTGAAATGCGG+CGG | 0.672239 | 2_1:-10066616 | None:intergenic |
| ACAAAATCAAATTTCTCCGG+CGG | 0.674025 | 2_1:-10066863 | None:intergenic |
| ATTCGTGTAGGAATGTGGAA+GGG | 0.678685 | 2_1:+10067077 | Msa0194200:CDS |
| GAGTTTGGTTGTGGACCGGT+TGG | 0.681067 | 2_1:+10067018 | Msa0194200:CDS |
| GTTAGCGTTGAAATATGAGG+TGG | 0.719947 | 2_1:+10066964 | Msa0194200:CDS |
| GTGGATGGAAGAAAGAACGG+CGG | 0.776465 | 2_1:-10066594 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATCTAAATCAAGAAAAA+CGG | - | chr2_1:10066816-10066835 | None:intergenic | 20.0% |
| !! | TTCATCTAAATCAAGAAAAA+CGG | - | chr2_1:10066816-10066835 | None:intergenic | 20.0% |
| ! | GTTAATGTCTTTGATTGATT+TGG | - | chr2_1:10066522-10066541 | None:intergenic | 25.0% |
| ! | TCTTGATTTAGATGAAACTT+TGG | + | chr2_1:10066820-10066839 | Msa0194200:CDS | 25.0% |
| ! | ACTACAAAATCAAATTTCTC+CGG | - | chr2_1:10066869-10066888 | None:intergenic | 25.0% |
| !!! | AGAAATTTGATTTTGTAGTC+CGG | + | chr2_1:10066870-10066889 | Msa0194200:CDS | 25.0% |
| !!! | TGATTGTTTTGATGATATGA+GGG | + | chr2_1:10067273-10067292 | Msa0194200:CDS | 25.0% |
| ! | GTTAATGTCTTTGATTGATT+TGG | - | chr2_1:10066522-10066541 | None:intergenic | 25.0% |
| ! | TCTTGATTTAGATGAAACTT+TGG | + | chr2_1:10066820-10066839 | Msa0194200:CDS | 25.0% |
| ! | ACTACAAAATCAAATTTCTC+CGG | - | chr2_1:10066869-10066888 | None:intergenic | 25.0% |
| !!! | AGAAATTTGATTTTGTAGTC+CGG | + | chr2_1:10066870-10066889 | Msa0194200:CDS | 25.0% |
| !!! | TGATTGTTTTGATGATATGA+GGG | + | chr2_1:10067273-10067292 | Msa0194200:CDS | 25.0% |
| TTCCACCTTCAATATCTAAT+CGG | + | chr2_1:10066786-10066805 | Msa0194200:CDS | 30.0% | |
| ! | GTTTTCCGATTAGATATTGA+AGG | - | chr2_1:10066794-10066813 | None:intergenic | 30.0% |
| TTAATCAAAATCGCATTCTC+AGG | - | chr2_1:10067190-10067209 | None:intergenic | 30.0% | |
| !!! | GTGATTGTTTTGATGATATG+AGG | + | chr2_1:10067272-10067291 | Msa0194200:CDS | 30.0% |
| TTCCACCTTCAATATCTAAT+CGG | + | chr2_1:10066786-10066805 | Msa0194200:CDS | 30.0% | |
| ! | GTTTTCCGATTAGATATTGA+AGG | - | chr2_1:10066794-10066813 | None:intergenic | 30.0% |
| TTAATCAAAATCGCATTCTC+AGG | - | chr2_1:10067190-10067209 | None:intergenic | 30.0% | |
| !!! | GTGATTGTTTTGATGATATG+AGG | + | chr2_1:10067272-10067291 | Msa0194200:CDS | 30.0% |
| !! | TTGTGAGAAGCTTTGAAATG+CGG | - | chr2_1:10066622-10066641 | None:intergenic | 35.0% |
| TTCAAAGCTTCTCACAAAAC+TGG | + | chr2_1:10066625-10066644 | Msa0194200:CDS | 35.0% | |
| TCAAAGCTTCTCACAAAACT+GGG | + | chr2_1:10066626-10066645 | Msa0194200:CDS | 35.0% | |
| ! | AAAAAGCAGGGTTTTGCAAA+CGG | - | chr2_1:10066741-10066760 | None:intergenic | 35.0% |
| TTCCGATTAGATATTGAAGG+TGG | - | chr2_1:10066791-10066810 | None:intergenic | 35.0% | |
| ACAAAATCAAATTTCTCCGG+CGG | - | chr2_1:10066866-10066885 | None:intergenic | 35.0% | |
| TTCAACACGTAGAAATCCAT+CGG | - | chr2_1:10066914-10066933 | None:intergenic | 35.0% | |
| !! | ATATGAGGTGGTGGTTTTTA+CGG | + | chr2_1:10066976-10066995 | Msa0194200:CDS | 35.0% |
| !! | TTATTTCGCATCGGCTTTAT+AGG | + | chr2_1:10067053-10067072 | Msa0194200:CDS | 35.0% |
| !! | TATTTCGCATCGGCTTTATA+GGG | + | chr2_1:10067054-10067073 | Msa0194200:CDS | 35.0% |
| !! | TGTGAAAGATTTGGGTTTTG+TGG | + | chr2_1:10067105-10067124 | Msa0194200:CDS | 35.0% |
| !! | GTGAAAGATTTGGGTTTTGT+GGG | + | chr2_1:10067106-10067125 | Msa0194200:CDS | 35.0% |
| TCACAAGCATCATCAACAAA+AGG | - | chr2_1:10067214-10067233 | None:intergenic | 35.0% | |
| !! | TTGTGAGAAGCTTTGAAATG+CGG | - | chr2_1:10066622-10066641 | None:intergenic | 35.0% |
| TTCAAAGCTTCTCACAAAAC+TGG | + | chr2_1:10066625-10066644 | Msa0194200:CDS | 35.0% | |
| TCAAAGCTTCTCACAAAACT+GGG | + | chr2_1:10066626-10066645 | Msa0194200:CDS | 35.0% | |
| ! | AAAAAGCAGGGTTTTGCAAA+CGG | - | chr2_1:10066741-10066760 | None:intergenic | 35.0% |
| TTCCGATTAGATATTGAAGG+TGG | - | chr2_1:10066791-10066810 | None:intergenic | 35.0% | |
| ACAAAATCAAATTTCTCCGG+CGG | - | chr2_1:10066866-10066885 | None:intergenic | 35.0% | |
| TTCAACACGTAGAAATCCAT+CGG | - | chr2_1:10066914-10066933 | None:intergenic | 35.0% | |
| !! | ATATGAGGTGGTGGTTTTTA+CGG | + | chr2_1:10066976-10066995 | Msa0194200:CDS | 35.0% |
| !! | TTATTTCGCATCGGCTTTAT+AGG | + | chr2_1:10067053-10067072 | Msa0194200:CDS | 35.0% |
| !! | TATTTCGCATCGGCTTTATA+GGG | + | chr2_1:10067054-10067073 | Msa0194200:CDS | 35.0% |
| !! | TGTGAAAGATTTGGGTTTTG+TGG | + | chr2_1:10067105-10067124 | Msa0194200:CDS | 35.0% |
| !! | GTGAAAGATTTGGGTTTTGT+GGG | + | chr2_1:10067106-10067125 | Msa0194200:CDS | 35.0% |
| TCACAAGCATCATCAACAAA+AGG | - | chr2_1:10067214-10067233 | None:intergenic | 35.0% | |
| CTCGTCTCAGTTCTTCAAAT+CGG | + | chr2_1:10066654-10066673 | Msa0194200:CDS | 40.0% | |
| GACGCTATCTTCAAAAAGCA+GGG | - | chr2_1:10066753-10066772 | None:intergenic | 40.0% | |
| !! | ATTTGATTTTGTAGTCCGGC+CGG | + | chr2_1:10066874-10066893 | Msa0194200:CDS | 40.0% |
| TCCAACAATTCATCAATCCC+CGG | - | chr2_1:10066941-10066960 | None:intergenic | 40.0% | |
| ! | AGCGTTAGCGTTGAAATATG+AGG | + | chr2_1:10066961-10066980 | Msa0194200:CDS | 40.0% |
| ! | GTTAGCGTTGAAATATGAGG+TGG | + | chr2_1:10066964-10066983 | Msa0194200:CDS | 40.0% |
| ATTCGTGTAGGAATGTGGAA+GGG | + | chr2_1:10067077-10067096 | Msa0194200:CDS | 40.0% | |
| AGGGAAGCTTGTGAAAGATT+TGG | + | chr2_1:10067096-10067115 | Msa0194200:CDS | 40.0% | |
| GGGAAGCTTGTGAAAGATTT+GGG | + | chr2_1:10067097-10067116 | Msa0194200:CDS | 40.0% | |
| !! | AAGATTTGGGTTTTGTGGGA+AGG | + | chr2_1:10067110-10067129 | Msa0194200:CDS | 40.0% |
| !! | AGATTTGGGTTTTGTGGGAA+GGG | + | chr2_1:10067111-10067130 | Msa0194200:CDS | 40.0% |
| !! | GGTTGATTCGAAAACGAAAC+TGG | - | chr2_1:10067169-10067188 | None:intergenic | 40.0% |
| TCGTGTTCAGATCTGATCAA+AGG | + | chr2_1:10067334-10067353 | Msa0194200:CDS | 40.0% | |
| CTCGTCTCAGTTCTTCAAAT+CGG | + | chr2_1:10066654-10066673 | Msa0194200:CDS | 40.0% | |
| GACGCTATCTTCAAAAAGCA+GGG | - | chr2_1:10066753-10066772 | None:intergenic | 40.0% | |
| !! | ATTTGATTTTGTAGTCCGGC+CGG | + | chr2_1:10066874-10066893 | Msa0194200:CDS | 40.0% |
| TCCAACAATTCATCAATCCC+CGG | - | chr2_1:10066941-10066960 | None:intergenic | 40.0% | |
| ! | AGCGTTAGCGTTGAAATATG+AGG | + | chr2_1:10066961-10066980 | Msa0194200:CDS | 40.0% |
| ! | GTTAGCGTTGAAATATGAGG+TGG | + | chr2_1:10066964-10066983 | Msa0194200:CDS | 40.0% |
| ATTCGTGTAGGAATGTGGAA+GGG | + | chr2_1:10067077-10067096 | Msa0194200:CDS | 40.0% | |
| AGGGAAGCTTGTGAAAGATT+TGG | + | chr2_1:10067096-10067115 | Msa0194200:CDS | 40.0% | |
| GGGAAGCTTGTGAAAGATTT+GGG | + | chr2_1:10067097-10067116 | Msa0194200:CDS | 40.0% | |
| !! | AAGATTTGGGTTTTGTGGGA+AGG | + | chr2_1:10067110-10067129 | Msa0194200:CDS | 40.0% |
| !! | AGATTTGGGTTTTGTGGGAA+GGG | + | chr2_1:10067111-10067130 | Msa0194200:CDS | 40.0% |
| !! | GGTTGATTCGAAAACGAAAC+TGG | - | chr2_1:10067169-10067188 | None:intergenic | 40.0% |
| TCGTGTTCAGATCTGATCAA+AGG | + | chr2_1:10067334-10067353 | Msa0194200:CDS | 40.0% | |
| AAGACATTAACCGTCGTCGT+TGG | + | chr2_1:10066531-10066550 | Msa0194200:CDS | 45.0% | |
| !! | TGAGAAGCTTTGAAATGCGG+CGG | - | chr2_1:10066619-10066638 | None:intergenic | 45.0% |
| CGACGCTATCTTCAAAAAGC+AGG | - | chr2_1:10066754-10066773 | None:intergenic | 45.0% | |
| TTCAAAAACTTCACCACCGC+CGG | + | chr2_1:10066847-10066866 | Msa0194200:CDS | 45.0% | |
| AAATCAAATTTCTCCGGCGG+TGG | - | chr2_1:10066863-10066882 | None:intergenic | 45.0% | |
| ! | ATCGGTTCACCATCAATCAC+CGG | - | chr2_1:10066896-10066915 | None:intergenic | 45.0% |
| TTTCTACGTGTTGAAGCGAC+CGG | + | chr2_1:10066919-10066938 | Msa0194200:CDS | 45.0% | |
| ACCGGGGATTGATGAATTGT+TGG | + | chr2_1:10066937-10066956 | Msa0194200:CDS | 45.0% | |
| ! | AGCGTTGAAATATGAGGTGG+TGG | + | chr2_1:10066967-10066986 | Msa0194200:CDS | 45.0% |
| ! | GCTTAAGGAGTATGCGAGTT+TGG | + | chr2_1:10067003-10067022 | Msa0194200:CDS | 45.0% |
| GATGCGAAATAAACCCGTTC+CGG | - | chr2_1:10067045-10067064 | None:intergenic | 45.0% | |
| ! | GGAACGGGTTTATTTCGCAT+CGG | + | chr2_1:10067044-10067063 | Msa0194200:CDS | 45.0% |
| ! | GGCTTTATAGGGATTCGTGT+AGG | + | chr2_1:10067065-10067084 | Msa0194200:CDS | 45.0% |
| TAGGGATTCGTGTAGGAATG+TGG | + | chr2_1:10067072-10067091 | Msa0194200:CDS | 45.0% | |
| GATTCGTGTAGGAATGTGGA+AGG | + | chr2_1:10067076-10067095 | Msa0194200:CDS | 45.0% | |
| TGTGGGAAGGGATTTGAAGA+AGG | + | chr2_1:10067123-10067142 | Msa0194200:CDS | 45.0% | |
| ATGCTTGTGATCGTGAGCTT+TGG | + | chr2_1:10067224-10067243 | Msa0194200:CDS | 45.0% | |
| !! | CGTGAGCTTTGGAAATTGAG+AGG | + | chr2_1:10067235-10067254 | Msa0194200:CDS | 45.0% |
| AAGACATTAACCGTCGTCGT+TGG | + | chr2_1:10066531-10066550 | Msa0194200:CDS | 45.0% | |
| !! | TGAGAAGCTTTGAAATGCGG+CGG | - | chr2_1:10066619-10066638 | None:intergenic | 45.0% |
| CGACGCTATCTTCAAAAAGC+AGG | - | chr2_1:10066754-10066773 | None:intergenic | 45.0% | |
| TTCAAAAACTTCACCACCGC+CGG | + | chr2_1:10066847-10066866 | Msa0194200:CDS | 45.0% | |
| AAATCAAATTTCTCCGGCGG+TGG | - | chr2_1:10066863-10066882 | None:intergenic | 45.0% | |
| ! | ATCGGTTCACCATCAATCAC+CGG | - | chr2_1:10066896-10066915 | None:intergenic | 45.0% |
| TTTCTACGTGTTGAAGCGAC+CGG | + | chr2_1:10066919-10066938 | Msa0194200:CDS | 45.0% | |
| ACCGGGGATTGATGAATTGT+TGG | + | chr2_1:10066937-10066956 | Msa0194200:CDS | 45.0% | |
| ! | AGCGTTGAAATATGAGGTGG+TGG | + | chr2_1:10066967-10066986 | Msa0194200:CDS | 45.0% |
| ! | GCTTAAGGAGTATGCGAGTT+TGG | + | chr2_1:10067003-10067022 | Msa0194200:CDS | 45.0% |
| GATGCGAAATAAACCCGTTC+CGG | - | chr2_1:10067045-10067064 | None:intergenic | 45.0% | |
| ! | GGAACGGGTTTATTTCGCAT+CGG | + | chr2_1:10067044-10067063 | Msa0194200:CDS | 45.0% |
| ! | GGCTTTATAGGGATTCGTGT+AGG | + | chr2_1:10067065-10067084 | Msa0194200:CDS | 45.0% |
| TAGGGATTCGTGTAGGAATG+TGG | + | chr2_1:10067072-10067091 | Msa0194200:CDS | 45.0% | |
| GATTCGTGTAGGAATGTGGA+AGG | + | chr2_1:10067076-10067095 | Msa0194200:CDS | 45.0% | |
| TGTGGGAAGGGATTTGAAGA+AGG | + | chr2_1:10067123-10067142 | Msa0194200:CDS | 45.0% | |
| ATGCTTGTGATCGTGAGCTT+TGG | + | chr2_1:10067224-10067243 | Msa0194200:CDS | 45.0% | |
| !! | CGTGAGCTTTGGAAATTGAG+AGG | + | chr2_1:10067235-10067254 | Msa0194200:CDS | 45.0% |
| !! | TTTTTCGACGCCAACGACGA+CGG | - | chr2_1:10066544-10066563 | None:intergenic | 50.0% |
| TCCGATAAAGAACGTCGTCG+CGG | + | chr2_1:10066565-10066584 | Msa0194200:CDS | 50.0% | |
| GTGGATGGAAGAAAGAACGG+CGG | - | chr2_1:10066597-10066616 | None:intergenic | 50.0% | |
| GCGGTGGATGGAAGAAAGAA+CGG | - | chr2_1:10066600-10066619 | None:intergenic | 50.0% | |
| !! | GGTGATTGATGGTGAACCGA+TGG | + | chr2_1:10066895-10066914 | Msa0194200:CDS | 50.0% |
| TTCTACGTGTTGAAGCGACC+GGG | + | chr2_1:10066920-10066939 | Msa0194200:CDS | 50.0% | |
| !! | TGAGGTGGTGGTTTTTACGG+CGG | + | chr2_1:10066979-10066998 | Msa0194200:CDS | 50.0% |
| GGAGTATGCGAGTTTGGTTG+TGG | + | chr2_1:10067009-10067028 | Msa0194200:CDS | 50.0% | |
| ATGCGAGTTTGGTTGTGGAC+CGG | + | chr2_1:10067014-10067033 | Msa0194200:CDS | 50.0% | |
| ! | GATCTGATCAAAGGCGTGTC+TGG | + | chr2_1:10067343-10067362 | Msa0194200:CDS | 50.0% |
| !! | TTTTTCGACGCCAACGACGA+CGG | - | chr2_1:10066544-10066563 | None:intergenic | 50.0% |
| TCCGATAAAGAACGTCGTCG+CGG | + | chr2_1:10066565-10066584 | Msa0194200:CDS | 50.0% | |
| GTGGATGGAAGAAAGAACGG+CGG | - | chr2_1:10066597-10066616 | None:intergenic | 50.0% | |
| GCGGTGGATGGAAGAAAGAA+CGG | - | chr2_1:10066600-10066619 | None:intergenic | 50.0% | |
| !! | GGTGATTGATGGTGAACCGA+TGG | + | chr2_1:10066895-10066914 | Msa0194200:CDS | 50.0% |
| TTCTACGTGTTGAAGCGACC+GGG | + | chr2_1:10066920-10066939 | Msa0194200:CDS | 50.0% | |
| !! | TGAGGTGGTGGTTTTTACGG+CGG | + | chr2_1:10066979-10066998 | Msa0194200:CDS | 50.0% |
| GGAGTATGCGAGTTTGGTTG+TGG | + | chr2_1:10067009-10067028 | Msa0194200:CDS | 50.0% | |
| ATGCGAGTTTGGTTGTGGAC+CGG | + | chr2_1:10067014-10067033 | Msa0194200:CDS | 50.0% | |
| ! | GATCTGATCAAAGGCGTGTC+TGG | + | chr2_1:10067343-10067362 | Msa0194200:CDS | 50.0% |
| GCCGCGACGACGTTCTTTAT+CGG | - | chr2_1:10066569-10066588 | None:intergenic | 55.0% | |
| GATGGAAGAAAGAACGGCGG+AGG | - | chr2_1:10066594-10066613 | None:intergenic | 55.0% | |
| !! | CTTTGAAATGCGGCGGTGGA+TGG | - | chr2_1:10066612-10066631 | None:intergenic | 55.0% |
| !! | GAAGCTTTGAAATGCGGCGG+TGG | - | chr2_1:10066616-10066635 | None:intergenic | 55.0% |
| GTTCACCATCAATCACCGGC+CGG | - | chr2_1:10066892-10066911 | None:intergenic | 55.0% | |
| TCTACGTGTTGAAGCGACCG+GGG | + | chr2_1:10066921-10066940 | Msa0194200:CDS | 55.0% | |
| ! | GGTTTTTACGGCGGCGCTTA+AGG | + | chr2_1:10066988-10067007 | Msa0194200:CDS | 55.0% |
| GAGTTTGGTTGTGGACCGGT+TGG | + | chr2_1:10067018-10067037 | Msa0194200:CDS | 55.0% | |
| TAAACCCGTTCCGGTCCAAC+CGG | - | chr2_1:10067036-10067055 | None:intergenic | 55.0% | |
| GCCGCGACGACGTTCTTTAT+CGG | - | chr2_1:10066569-10066588 | None:intergenic | 55.0% | |
| GATGGAAGAAAGAACGGCGG+AGG | - | chr2_1:10066594-10066613 | None:intergenic | 55.0% | |
| !! | CTTTGAAATGCGGCGGTGGA+TGG | - | chr2_1:10066612-10066631 | None:intergenic | 55.0% |
| !! | GAAGCTTTGAAATGCGGCGG+TGG | - | chr2_1:10066616-10066635 | None:intergenic | 55.0% |
| GTTCACCATCAATCACCGGC+CGG | - | chr2_1:10066892-10066911 | None:intergenic | 55.0% | |
| TCTACGTGTTGAAGCGACCG+GGG | + | chr2_1:10066921-10066940 | Msa0194200:CDS | 55.0% | |
| ! | GGTTTTTACGGCGGCGCTTA+AGG | + | chr2_1:10066988-10067007 | Msa0194200:CDS | 55.0% |
| GAGTTTGGTTGTGGACCGGT+TGG | + | chr2_1:10067018-10067037 | Msa0194200:CDS | 55.0% | |
| TAAACCCGTTCCGGTCCAAC+CGG | - | chr2_1:10067036-10067055 | None:intergenic | 55.0% | |
| GTAGTCCGGCCGGTGATTGA+TGG | + | chr2_1:10066884-10066903 | Msa0194200:CDS | 60.0% | |
| TGGTTGTGGACCGGTTGGAC+CGG | + | chr2_1:10067023-10067042 | Msa0194200:CDS | 60.0% | |
| GTAGTCCGGCCGGTGATTGA+TGG | + | chr2_1:10066884-10066903 | Msa0194200:CDS | 60.0% | |
| TGGTTGTGGACCGGTTGGAC+CGG | + | chr2_1:10067023-10067042 | Msa0194200:CDS | 60.0% | |
| GTGGACCGGTTGGACCGGAA+CGG | + | chr2_1:10067028-10067047 | Msa0194200:CDS | 65.0% | |
| TGGACCGGTTGGACCGGAAC+GGG | + | chr2_1:10067029-10067048 | Msa0194200:CDS | 65.0% | |
| GTGGACCGGTTGGACCGGAA+CGG | + | chr2_1:10067028-10067047 | Msa0194200:CDS | 65.0% | |
| TGGACCGGTTGGACCGGAAC+GGG | + | chr2_1:10067029-10067048 | Msa0194200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10066488 | 10067372 | 10066488 | ID=Msa0194200;Name=Msa0194200 |
| chr2_1 | mRNA | 10066488 | 10067372 | 10066488 | ID=Msa0194200-mRNA-1;Parent=Msa0194200;Name=Msa0194200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|294 |
| chr2_1 | exon | 10066488 | 10067372 | 10066488 | ID=Msa0194200-mRNA-1:exon:4549;Parent=Msa0194200-mRNA-1 |
| chr2_1 | CDS | 10066488 | 10067372 | 10066488 | ID=Msa0194200-mRNA-1:cds;Parent=Msa0194200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
