AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368860 MtrunA17_Chr3g0112731 97.311 595 12 2 1 591 1 595 0.0 1193
Msa0368860 MtrunA17_Chr5g0436141 73.655 539 131 5 47 583 32 561 0.0 800
Msa0368860 MtrunA17_Chr7g0240501 62.008 508 177 4 55 561 144 636 0.0 647
Msa0368860 MtrunA17_Chr4g0008771 63.403 429 148 3 71 495 64 487 0.0 550
Msa0368860 MtrunA17_Chr4g0038651 56.600 447 185 4 95 535 82 525 2.44e-176 511
Msa0368860 MtrunA17_Chr8g0348921 57.031 384 144 4 94 464 91 466 2.86e-144 426
Msa0368860 MtrunA17_Chr4g0004771 50.131 381 162 5 100 479 90 443 1.50e-132 398
Msa0368860 MtrunA17_Chr7g0247761 51.781 421 139 4 100 464 113 525 2.89e-132 397
Msa0368860 MtrunA17_Chr6g0485861 51.053 380 160 5 102 474 98 458 4.18e-130 392
Msa0368860 MtrunA17_Chr2g0331631 48.750 400 186 4 65 463 51 432 1.51e-129 390
Msa0368860 MtrunA17_Chr5g0408591 46.739 368 186 3 96 463 114 471 1.43e-109 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368860 AT5G05940.1 64.190 525 169 10 55 570 61 575 0.0 667
Msa0368860 AT5G02010.1 69.504 423 106 5 95 511 65 470 0.0 608
Msa0368860 AT3G55660.1 55.263 532 185 13 55 556 69 577 0.0 539
Msa0368860 AT5G05940.2 69.474 380 108 3 55 431 61 435 0.0 538
Msa0368860 AT4G38430.1 53.333 480 199 6 32 509 40 496 1.95e-171 498
Msa0368860 AT3G55660.2 61.417 381 131 5 55 431 69 437 1.31e-160 466
Msa0368860 AT4G00460.2 53.173 457 185 8 22 470 38 473 6.89e-155 453
Msa0368860 AT4G00460.4 53.173 457 185 8 22 470 38 473 6.89e-155 453
Msa0368860 AT1G01700.1 51.860 457 198 7 17 464 36 479 2.99e-148 436
Msa0368860 AT1G01700.4 48.665 487 198 8 17 464 36 509 1.45e-141 421
Msa0368860 AT2G45890.1 52.880 382 159 6 99 470 92 462 3.16e-134 400
Msa0368860 AT3G24620.1 52.174 368 156 5 99 465 84 432 3.61e-131 394
Msa0368860 AT1G52240.1 52.575 369 152 5 101 468 105 451 1.19e-126 383
Msa0368860 AT1G01700.3 49.425 435 191 8 17 435 36 457 2.00e-126 380
Msa0368860 AT4G13240.1 50.267 374 166 5 95 467 69 423 3.55e-126 381
Msa0368860 AT4G00460.3 56.305 341 134 5 137 470 8 340 2.57e-125 372
Msa0368860 AT1G79860.1 48.501 367 168 5 98 463 90 436 1.13e-121 369
Msa0368860 AT5G19560.1 49.189 370 170 4 99 467 43 395 2.74e-120 365
Msa0368860 AT5G19560.5 49.189 370 170 4 99 467 43 395 2.74e-120 365
Msa0368860 AT5G19560.4 49.189 370 170 4 99 467 62 414 6.52e-120 365
Msa0368860 AT3G16130.1 49.867 377 163 6 97 468 87 442 2.36e-119 364
Msa0368860 AT5G19560.2 47.605 334 157 4 99 431 62 378 1.30e-103 318
Msa0368860 AT1G31650.2 42.779 367 201 2 100 466 108 465 1.67e-100 316
Msa0368860 AT1G31650.1 42.779 367 201 2 100 466 136 493 6.70e-100 315
Msa0368860 AT4G00460.1 52.427 309 128 6 22 326 38 331 3.39e-95 295
Msa0368860 AT1G01700.5 51.163 301 137 4 17 312 36 331 2.77e-89 281
Msa0368860 AT1G01700.2 51.163 301 137 4 17 312 36 331 2.77e-89 281
Msa0368860 AT5G19560.3 46.763 278 130 4 191 467 5 265 5.93e-81 259

Find 139 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGTTCCTGAGTCATATT+TGG 0.209473 3_1:+65824184 Msa0368860:CDS
GTTTCACAGCTACAGAATTT+TGG 0.237624 3_1:+65823943 Msa0368860:CDS
CCGAATTTCACAGCATTTAG+AGG 0.271027 3_1:-65825582 None:intergenic
CAGCATTGCTTTGGCTGAAA+TGG 0.280188 3_1:+65824163 Msa0368860:CDS
ACGCACAAAATGTACAATTA+TGG 0.280576 3_1:+65822099 Msa0368860:CDS
TTCTGCAGGTAATGACTTGC+AGG 0.301595 3_1:+65823736 Msa0368860:intron
GAACATGTAGCTACTGCATT+TGG 0.303375 3_1:+65823481 Msa0368860:intron
GGAGTTCTCTCCCCTCTTAC+AGG 0.304069 3_1:-65825381 None:intergenic
ATCATGTTCAAATGATATTT+CGG 0.304702 3_1:+65825773 Msa0368860:three_prime_UTR
AGAAAGCTACTCTAGAGTTT+TGG 0.305551 3_1:+65825146 Msa0368860:CDS
TTGTTGAATTAATACCTTCT+TGG 0.307496 3_1:+65823593 Msa0368860:CDS
GCTTCGGGAACACGGGGAAC+GGG 0.327886 3_1:-65824056 None:intergenic
CTTGTTGCATTGGATCTTGC+TGG 0.334600 3_1:-65825012 None:intergenic
ACTACTACCAAATAAAATAT+TGG 0.339994 3_1:-65825667 None:intergenic
TTGAAATGGAAAAGGTGAAA+TGG 0.342721 3_1:-65821796 None:intergenic
GTTAAGGACTTCATGCTTGA+TGG 0.349943 3_1:+65824897 Msa0368860:CDS
AAACCTCAGCGTCGCGGCTT+TGG 0.359263 3_1:+65825450 Msa0368860:CDS
CCTGAGACAGACACTGAAAA+TGG 0.361705 3_1:-65825297 None:intergenic
GTAGTTGAACGGTTGGGATT+AGG 0.362566 3_1:-65824855 None:intergenic
TGAAATGGAAAAGGTGAAAT+GGG 0.365912 3_1:-65821795 None:intergenic
CTTCTCACTGAGACCTGCTT+CGG 0.374692 3_1:-65824072 None:intergenic
CCTCTAAATGCTGTGAAATT+CGG 0.375055 3_1:+65825582 Msa0368860:CDS
CTACTGCATTTGGGCAACTT+TGG 0.383497 3_1:+65823491 Msa0368860:CDS
AAAAGGGGTTTGCACTGCTT+TGG 0.392592 3_1:+65822553 Msa0368860:CDS
ACCTCAAGTTTCTTTCCATC+AGG 0.394767 3_1:-65823625 None:intergenic
AGAGCTTTGTCAAATTATCT+TGG 0.407039 3_1:+65825480 Msa0368860:CDS
GTTCAACTACAAAGTCTTCA+TGG 0.412655 3_1:+65824868 Msa0368860:CDS
TTCTCACTGAGACCTGCTTC+GGG 0.416408 3_1:-65824071 None:intergenic
GTCTATCAACAGCATTGCTT+TGG 0.420189 3_1:+65824154 Msa0368860:CDS
GGTGAAGATATGTCAGGTTC+AGG 0.421119 3_1:+65822530 Msa0368860:CDS
TGGAAGCTGCTATTTATCTA+TGG 0.429701 3_1:+65824805 Msa0368860:CDS
GACTTTGTAGTTGAACGGTT+GGG 0.435846 3_1:-65824861 None:intergenic
TCCTTGAAGCATCGGTTCCC+TGG 0.436072 3_1:+65824966 Msa0368860:CDS
GTTCCCCGTGTTCCCGAAGC+AGG 0.436453 3_1:+65824059 Msa0368860:CDS
AACATGTAGCTACTGCATTT+GGG 0.437715 3_1:+65823482 Msa0368860:intron
GAAGTTGAAGCTAAATCAAA+TGG 0.440177 3_1:+65821971 Msa0368860:CDS
GTGAATGGATACAAATGAAA+GGG 0.443011 3_1:-65825645 None:intergenic
AATGCCATTACTAATCTTTG+TGG 0.444234 3_1:+65822584 Msa0368860:CDS
TGCTTCGGGAACACGGGGAA+CGG 0.446615 3_1:-65824057 None:intergenic
GAATTGGAACCTTGTTGCAT+TGG 0.446692 3_1:-65825022 None:intergenic
TTACTTAAATCTGAAGTAGT+TGG 0.449261 3_1:+65825717 Msa0368860:three_prime_UTR
TTATCGAGTTTGCGAAGGGC+TGG 0.449399 3_1:-65823786 None:intergenic
GATATGTCAGGTTCAGGAAA+AGG 0.450921 3_1:+65822536 Msa0368860:CDS
TCTTTCTTCTCACAAGGTAG+TGG 0.451314 3_1:-65823523 None:intergenic
ACACAAACATTTCAGGATGT+TGG 0.451753 3_1:+65825111 Msa0368860:intron
AGCCGCTGATTCAGAAGGTT+CGG 0.452812 3_1:+65823986 Msa0368860:CDS
TCAGGAAATGTTTGCCAAGA+AGG 0.453625 3_1:-65823607 None:intergenic
AAATCAAATGGTACTCCTCT+TGG 0.453653 3_1:+65821983 Msa0368860:CDS
GAAAGTGTAGCTTTGAGAAT+AGG 0.456755 3_1:-65822010 None:intergenic
AGATAAAGTTTCCATCTTTG+AGG 0.460415 3_1:-65821831 None:intergenic
GCCAGGGAACCGATGCTTCA+AGG 0.461493 3_1:-65824967 None:intergenic
TGGGTCTGTTAGAACTCAAC+GGG 0.466908 3_1:-65821776 None:intergenic
ATTATGGATGTAAAAGTGTC+AGG 0.468142 3_1:+65822115 Msa0368860:CDS
TTCTAAGTTCCTTGAAGCAT+CGG 0.472432 3_1:+65824958 Msa0368860:CDS
ATATGTCAGGTTCAGGAAAA+GGG 0.474996 3_1:+65822537 Msa0368860:CDS
ACTGTTTAAGGATGTTTGAA+AGG 0.479254 3_1:-65821696 None:intergenic
TTTGCATTGGTTCCTACAAC+GGG 0.484042 3_1:+65825246 Msa0368860:CDS
GTTGATGCAAATATCTGTCC+TGG 0.487154 3_1:-65823760 None:intergenic
CCAAATAAAATATTGGTGAA+TGG 0.488327 3_1:-65825660 None:intergenic
AGAAATGTGGCAAAGAGAGA+TGG 0.490084 3_1:+65823543 Msa0368860:CDS
CCATTGATTAGTCCTGTAAG+AGG 0.490411 3_1:+65825369 Msa0368860:CDS
AGAACAAGAACGCTTTGAGC+TGG 0.498779 3_1:-65822032 None:intergenic
GAAACCACATTACCCGTTGT+AGG 0.500182 3_1:-65825258 None:intergenic
TTGTTGTTGTTGTGGAGGAA+AGG 0.502003 3_1:-65825402 None:intergenic
ACATTCAGACAGATTTGCAT+TGG 0.509738 3_1:+65825233 Msa0368860:CDS
ACTCCACACAAAGCAGCATT+CGG 0.510466 3_1:+65825321 Msa0368860:CDS
TCTTGGCAAACATTTCCTGA+TGG 0.512838 3_1:+65823610 Msa0368860:CDS
CTGAATTGACTTGCGAAAAG+AGG 0.513814 3_1:-65824009 None:intergenic
AAGGTAGTTTGAGTTAAGCC+AGG 0.520536 3_1:-65824984 None:intergenic
AGATTTGCAAAATTGTTGCT+TGG 0.520945 3_1:+65822509 Msa0368860:CDS
CTTCGGGAACACGGGGAACG+GGG 0.523029 3_1:-65824055 None:intergenic
CACATTTCTTTCTTCTCACA+AGG 0.525180 3_1:-65823529 None:intergenic
ACACAAATCAAACTTGGAAG+TGG 0.525473 3_1:+65822075 Msa0368860:CDS
GAGACCTGCTTCGGGAACAC+GGG 0.529025 3_1:-65824063 None:intergenic
AAACAAACACAAATCAAACT+TGG 0.529417 3_1:+65822069 Msa0368860:CDS
TTGCTTGGTGAAGATATGTC+AGG 0.529612 3_1:+65822524 Msa0368860:CDS
TTCAACTACAAAGTCTTCAT+GGG 0.532814 3_1:+65824869 Msa0368860:CDS
TGAGACCTGCTTCGGGAACA+CGG 0.534669 3_1:-65824064 None:intergenic
TTGGATCTTGCTGGTATCCA+AGG 0.534759 3_1:-65825003 None:intergenic
GGTGAATGGATACAAATGAA+AGG 0.539075 3_1:-65825646 None:intergenic
CGAGTTTGCGAAGGGCTGGA+AGG 0.544385 3_1:-65823782 None:intergenic
AGACTTTGTAGTTGAACGGT+TGG 0.547598 3_1:-65824862 None:intergenic
GGACTAATCAATGGCACAGA+AGG 0.548607 3_1:-65825360 None:intergenic
AGGTAATGACTTGCAGGCCC+AGG 0.549183 3_1:+65823742 Msa0368860:intron
TGGCTTAACTCAAACTACCT+TGG 0.552224 3_1:+65824986 Msa0368860:CDS
CATTGATGATTTGTTATACG+TGG 0.554608 3_1:+65825197 Msa0368860:CDS
CATACCACAAAGATTAGTAA+TGG 0.555497 3_1:-65822588 None:intergenic
CCTCTTACAGGACTAATCAA+TGG 0.560425 3_1:-65825369 None:intergenic
ATGAAGACTTTGTAGTTGAA+CGG 0.561493 3_1:-65824866 None:intergenic
CAGAATGGAAGAACTTGCCT+CGG 0.562732 3_1:+65824675 Msa0368860:intron
ATTTGCATTGGTTCCTACAA+CGG 0.562897 3_1:+65825245 Msa0368860:CDS
CATTGATTAGTCCTGTAAGA+GGG 0.566090 3_1:+65825370 Msa0368860:CDS
TGGGATTAGGCGTGGATCTG+TGG 0.568891 3_1:-65824842 None:intergenic
GGCAATTCAACTGAGGTCAA+TGG 0.576601 3_1:+65825528 Msa0368860:CDS
GGTTCCTACAACGGGTAATG+TGG 0.577051 3_1:+65825254 Msa0368860:CDS
CACATCAGATCAATTCTCCT+CGG 0.578395 3_1:+65824719 Msa0368860:CDS
AACAGATGTTGATATGATGA+AGG 0.579015 3_1:+65822484 Msa0368860:intron
TGAACGGTTGGGATTAGGCG+TGG 0.579280 3_1:-65824850 None:intergenic
TTCTGAAGTAGAAATTGAAG+AGG 0.582544 3_1:-65821951 None:intergenic
GCATGTTATCGAGTTTGCGA+AGG 0.584286 3_1:-65823791 None:intergenic
ATTGTAGCCGCTGATTCAGA+AGG 0.591209 3_1:+65823981 Msa0368860:CDS
CAAATGGTACTCCTCTTGGT+TGG 0.592121 3_1:+65821987 Msa0368860:CDS
CATGTTATCGAGTTTGCGAA+GGG 0.595448 3_1:-65823790 None:intergenic
TATGTCAGGTTCAGGAAAAG+GGG 0.595512 3_1:+65822538 Msa0368860:CDS
GGCACAGAAGGCGAAAACTT+AGG 0.596415 3_1:-65825348 None:intergenic
TAGAAGTGAGACCTTGGGGA+GGG 0.597116 3_1:-65824210 None:intergenic
TTGATGCAAATATCTGTCCT+GGG 0.598206 3_1:-65823759 None:intergenic
TGTGGCAAAGAGAGATGGAA+TGG 0.599356 3_1:+65823548 Msa0368860:CDS
ATGGGTCTGTTAGAACTCAA+CGG 0.600446 3_1:-65821777 None:intergenic
AGGGTTTCCAAATATGACTC+AGG 0.603777 3_1:-65824191 None:intergenic
AGAGGTCTAAACAATCAAGT+AGG 0.606917 3_1:-65824746 None:intergenic
TCTAGAACTACAAGTTTCAG+TGG 0.607091 3_1:+65821917 Msa0368860:CDS
AGGTAGTTTGAGTTAAGCCA+GGG 0.610626 3_1:-65824983 None:intergenic
TGAATGGATACAAATGAAAG+GGG 0.619752 3_1:-65825644 None:intergenic
ACACCAAAGCCGCGACGCTG+AGG 0.624563 3_1:-65825453 None:intergenic
AGCGGCAAGAAGAGAAGTGG+TGG 0.627026 3_1:+65824030 Msa0368860:CDS
TTCAGCGGCAAGAAGAGAAG+TGG 0.628274 3_1:+65824027 Msa0368860:CDS
CAGCAAGATCCAATGCAACA+AGG 0.629004 3_1:+65825013 Msa0368860:CDS
TCCTGATGGAAAGAAACTTG+AGG 0.634337 3_1:+65823624 Msa0368860:CDS
ATTGATCTGATGTGATGTAT+CGG 0.636126 3_1:-65824710 None:intergenic
GTGCCGAATGCTGCTTTGTG+TGG 0.636553 3_1:-65825324 None:intergenic
AGACCTGCTTCGGGAACACG+GGG 0.636721 3_1:-65824062 None:intergenic
GTGCAATATGTTCAGAAGAG+AGG 0.640548 3_1:-65824764 None:intergenic
TCAACTACAAAGTCTTCATG+GGG 0.644332 3_1:+65824870 Msa0368860:CDS
ATTGATTAGTCCTGTAAGAG+GGG 0.657034 3_1:+65825371 Msa0368860:CDS
ATATTTGGAAACCCTCCCCA+AGG 0.663884 3_1:+65824199 Msa0368860:CDS
GAGACTAAAACAAAGACATG+TGG 0.664012 3_1:+65825507 Msa0368860:CDS
CTTGTGAGAAGAAAGAAATG+TGG 0.666461 3_1:+65823530 Msa0368860:CDS
GGCCGAACCTTCTGAATCAG+CGG 0.670869 3_1:-65823988 None:intergenic
AACGTCAAACCTCAGCGTCG+CGG 0.676876 3_1:+65825444 Msa0368860:CDS
TTAGAAGTGAGACCTTGGGG+AGG 0.695345 3_1:-65824211 None:intergenic
ATCGGTAAATAAAATCTCCG+AGG 0.703369 3_1:-65824692 None:intergenic
ACAATCAAGTAGGCACTCCG+AGG 0.706887 3_1:-65824736 None:intergenic
TTGAGAATAGGCCAACCAAG+AGG 0.709258 3_1:-65821998 None:intergenic
GACATGTGGCAATTCAACTG+AGG 0.716254 3_1:+65825521 Msa0368860:CDS
GATAAATAGCAGCTTCCACG+CGG 0.726168 3_1:-65824800 None:intergenic
GTTGTGATGATGAAGACGTG+TGG 0.743684 3_1:-65821668 None:intergenic
ACTCGAGATTGCAAACCGCG+TGG 0.746691 3_1:+65824785 Msa0368860:CDS
CAACTACAAAGTCTTCATGG+GGG 0.781366 3_1:+65824871 Msa0368860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAAAGTTTGAAAAAA+TGG - chr3_1:65821547-65821566 None:intergenic 15.0%
!!! GTTTTATTCTGTAATTAAAT+TGG + chr3_1:65822358-65822377 Msa0368860:intron 15.0%
!!! ATTGAAATCAATTTTTGTTA+CGG + chr3_1:65823403-65823422 Msa0368860:intron 15.0%
!! TATGTGAATTATTATGATTA+TGG + chr3_1:65823695-65823714 Msa0368860:intron 15.0%
!! ATCTTAGTCATAAAATAAAA+TGG - chr3_1:65824267-65824286 None:intergenic 15.0%
!!! ATTTTATGACTAAGATAATT+AGG + chr3_1:65824271-65824290 Msa0368860:intron 15.0%
!!! TTTTATGACTAAGATAATTA+GGG + chr3_1:65824272-65824291 Msa0368860:intron 15.0%
!!! TATTTTATCAATTTACAGAA+TGG + chr3_1:65824660-65824679 Msa0368860:intron 15.0%
!!! ATATATAACTTGTATAGAAT+TGG - chr3_1:65825041-65825060 None:intergenic 15.0%
!! TTTGAAAAAATATAGGATGT+TGG - chr3_1:65821727-65821746 None:intergenic 20.0%
!! AGACAAGTTTGAAAAAATAT+AGG - chr3_1:65821734-65821753 None:intergenic 20.0%
!!! AAAAGTTTTTGAAATGGAAA+AGG - chr3_1:65821807-65821826 None:intergenic 20.0%
!! TATTCTGTAATTAAATTGGT+TGG + chr3_1:65822362-65822381 Msa0368860:intron 20.0%
!!! GATTTTTAAGTGCTAATTAT+TGG + chr3_1:65822437-65822456 Msa0368860:intron 20.0%
!! AAAATTTGTCAACTACAATA+TGG - chr3_1:65822629-65822648 None:intergenic 20.0%
!!! TAATTATGTGTTTCTTTTCA+TGG + chr3_1:65822708-65822727 Msa0368860:intron 20.0%
!!! TAATTATGTGTTTCTTTTCA+TGG + chr3_1:65822708-65822727 Msa0368860:intron 20.0%
!! GAAATTAAGATTTGTAACTT+TGG + chr3_1:65822964-65822983 Msa0368860:intron 20.0%
!!! TTTACATTTTCTTTTAACAC+AGG + chr3_1:65823908-65823927 Msa0368860:intron 20.0%
!! GTCATAAAATAAAATGGAAT+AGG - chr3_1:65824261-65824280 None:intergenic 20.0%
!! TTAATTGACAAAAGATTAAC+TGG - chr3_1:65824608-65824627 None:intergenic 20.0%
!! AAAATGTGTCAATGTTAAAA+AGG - chr3_1:65825091-65825110 None:intergenic 20.0%
!! ACTACTACCAAATAAAATAT+TGG - chr3_1:65825670-65825689 None:intergenic 20.0%
!!! ATGTTGGTTTTAACTGTTTA+AGG - chr3_1:65821711-65821730 None:intergenic 25.0%
!!! GGTAAGAAAAGTTTTTGAAA+TGG - chr3_1:65821813-65821832 None:intergenic 25.0%
! AACTCTCAAAAGAAAAAAGA+TGG + chr3_1:65821857-65821876 Msa0368860:CDS 25.0%
! ACTCTCAAAAGAAAAAAGAT+GGG + chr3_1:65821858-65821877 Msa0368860:CDS 25.0%
! AAACAAACACAAATCAAACT+TGG + chr3_1:65822069-65822088 Msa0368860:CDS 25.0%
!!! TTGGATTTGTCCTTTTTTTT+TGG + chr3_1:65822456-65822475 Msa0368860:intron 25.0%
! CTGTTTCAATCCAAAAAAAA+AGG - chr3_1:65822469-65822488 None:intergenic 25.0%
!! GTAGTTGACAAATTTTCTTT+TGG + chr3_1:65822633-65822652 Msa0368860:intron 25.0%
!!! TTCTTTTGGTTTGTTTAAGT+TGG + chr3_1:65822647-65822666 Msa0368860:intron 25.0%
! TAAATTTAGTGTTCAACTCA+CGG + chr3_1:65823010-65823029 Msa0368860:intron 25.0%
! TGTTATTAATTCCCAAAGAA+TGG - chr3_1:65823083-65823102 None:intergenic 25.0%
!!! ATGGTGTTATTAATGTCAAA+AGG + chr3_1:65823253-65823272 Msa0368860:intron 25.0%
! TGTTATTAATGTCAAAAGGA+TGG + chr3_1:65823257-65823276 Msa0368860:intron 25.0%
! TTCATGTAAAAGTGAATTGA+AGG - chr3_1:65823329-65823348 None:intergenic 25.0%
! TTGTTGAATTAATACCTTCT+TGG + chr3_1:65823593-65823612 Msa0368860:CDS 25.0%
! AAAGAAACTTGAGGTAAATT+TGG + chr3_1:65823633-65823652 Msa0368860:intron 25.0%
!! TGATTATGGTGTTTCTAATA+CGG + chr3_1:65823709-65823728 Msa0368860:intron 25.0%
! GTCTTTCTATATGAAATCAA+TGG - chr3_1:65824329-65824348 None:intergenic 25.0%
!! ACATTTTACACAAACATTTC+AGG + chr3_1:65825104-65825123 Msa0368860:intron 25.0%
! CCAAATAAAATATTGGTGAA+TGG - chr3_1:65825663-65825682 None:intergenic 25.0%
!! CCATTCACCAATATTTTATT+TGG + chr3_1:65825660-65825679 Msa0368860:three_prime_UTR 25.0%
!! TTACTTAAATCTGAAGTAGT+TGG + chr3_1:65825717-65825736 Msa0368860:three_prime_UTR 25.0%
ACTGTTTAAGGATGTTTGAA+AGG - chr3_1:65821699-65821718 None:intergenic 30.0%
TGAAATGGAAAAGGTGAAAT+GGG - chr3_1:65821798-65821817 None:intergenic 30.0%
TTGAAATGGAAAAGGTGAAA+TGG - chr3_1:65821799-65821818 None:intergenic 30.0%
! AACTTTTCTTACCTCAAAGA+TGG + chr3_1:65821820-65821839 Msa0368860:exon 30.0%
AGATAAAGTTTCCATCTTTG+AGG - chr3_1:65821834-65821853 None:intergenic 30.0%
!! TTCTGAAGTAGAAATTGAAG+AGG - chr3_1:65821954-65821973 None:intergenic 30.0%
GAAGTTGAAGCTAAATCAAA+TGG + chr3_1:65821971-65821990 Msa0368860:CDS 30.0%
ACGCACAAAATGTACAATTA+TGG + chr3_1:65822099-65822118 Msa0368860:CDS 30.0%
!! ATTATGGATGTAAAAGTGTC+AGG + chr3_1:65822115-65822134 Msa0368860:CDS 30.0%
AACAGATGTTGATATGATGA+AGG + chr3_1:65822484-65822503 Msa0368860:intron 30.0%
AGATTTGCAAAATTGTTGCT+TGG + chr3_1:65822509-65822528 Msa0368860:CDS 30.0%
AATGCCATTACTAATCTTTG+TGG + chr3_1:65822584-65822603 Msa0368860:CDS 30.0%
CATACCACAAAGATTAGTAA+TGG - chr3_1:65822591-65822610 None:intergenic 30.0%
! ATGTGTTTCTTTTCATGGTA+AGG + chr3_1:65822713-65822732 Msa0368860:intron 30.0%
! ATGTGTTTCTTTTCATGGTA+AGG + chr3_1:65822713-65822732 Msa0368860:intron 30.0%
TGTCCAATCAAAAAAAAGAG+TGG - chr3_1:65823112-65823131 None:intergenic 30.0%
TTGTAAAAGTGAGTTCAATG+TGG - chr3_1:65823373-65823392 None:intergenic 30.0%
CATACAACTTACTGTTTGTT+TGG - chr3_1:65823434-65823453 None:intergenic 30.0%
! TATCGAATCTTGTTCTTTTG+TGG + chr3_1:65823824-65823843 Msa0368860:intron 30.0%
!! GAATTTTGGTATGTTGATCA+AGG + chr3_1:65823957-65823976 Msa0368860:CDS 30.0%
TGGAATAGGCTATAGAAAAA+AGG - chr3_1:65824247-65824266 None:intergenic 30.0%
! AACCATTAGTTTAGATCGAA+TGG + chr3_1:65824388-65824407 Msa0368860:intron 30.0%
AACCATTCGATCTAAACTAA+TGG - chr3_1:65824393-65824412 None:intergenic 30.0%
CTAAGTCTATAATAGGGTAA+TGG - chr3_1:65824482-65824501 None:intergenic 30.0%
CATTACCCTATTATAGACTT+AGG + chr3_1:65824480-65824499 Msa0368860:intron 30.0%
GTATGCCTAAGTCTATAATA+GGG - chr3_1:65824488-65824507 None:intergenic 30.0%
TTAACTGGAGAATATTTCAC+AGG - chr3_1:65824593-65824612 None:intergenic 30.0%
ATTGATCTGATGTGATGTAT+CGG - chr3_1:65824713-65824732 None:intergenic 30.0%
ATGAAGACTTTGTAGTTGAA+CGG - chr3_1:65824869-65824888 None:intergenic 30.0%
TTCAACTACAAAGTCTTCAT+GGG + chr3_1:65824869-65824888 Msa0368860:CDS 30.0%
!! CATTGATGATTTGTTATACG+TGG + chr3_1:65825197-65825216 Msa0368860:CDS 30.0%
! AGAGCTTTGTCAAATTATCT+TGG + chr3_1:65825480-65825499 Msa0368860:CDS 30.0%
!! GTTCTGTTTTCTTGTTACTT+GGG - chr3_1:65825560-65825579 None:intergenic 30.0%
! TGTTCTGTTTTCTTGTTACT+TGG - chr3_1:65825561-65825580 None:intergenic 30.0%
TGAATGGATACAAATGAAAG+GGG - chr3_1:65825647-65825666 None:intergenic 30.0%
GTGAATGGATACAAATGAAA+GGG - chr3_1:65825648-65825667 None:intergenic 30.0%
CGGGAAAAAAAGAACAACAT+GGG - chr3_1:65821760-65821779 None:intergenic 35.0%
ACGGGAAAAAAAGAACAACA+TGG - chr3_1:65821761-65821780 None:intergenic 35.0%
! TCTAGAACTACAAGTTTCAG+TGG + chr3_1:65821917-65821936 Msa0368860:CDS 35.0%
AAATCAAATGGTACTCCTCT+TGG + chr3_1:65821983-65822002 Msa0368860:CDS 35.0%
!! GAAAGTGTAGCTTTGAGAAT+AGG - chr3_1:65822013-65822032 None:intergenic 35.0%
ACACAAATCAAACTTGGAAG+TGG + chr3_1:65822075-65822094 Msa0368860:CDS 35.0%
ATATGTCAGGTTCAGGAAAA+GGG + chr3_1:65822537-65822556 Msa0368860:CDS 35.0%
!! TGGTTTGTTTAAGTTGGCAA+AGG + chr3_1:65822653-65822672 Msa0368860:intron 35.0%
! TTAAGTGTTAAAAGCGCGTT+TGG - chr3_1:65822993-65823012 None:intergenic 35.0%
TGTACCAAACTACCATTCTT+TGG + chr3_1:65823068-65823087 Msa0368860:intron 35.0%
GTACCAAACTACCATTCTTT+GGG + chr3_1:65823069-65823088 Msa0368860:intron 35.0%
ATTCCCAAAGAATGGTAGTT+TGG - chr3_1:65823075-65823094 None:intergenic 35.0%
!!! CTGCCACTCTTTTTTTTGAT+TGG + chr3_1:65823106-65823125 Msa0368860:intron 35.0%
ATACCAATACCATCATGTCT+AGG + chr3_1:65823161-65823180 Msa0368860:intron 35.0%
GTGTCCAATCAAAAAAAGAG+TGG + chr3_1:65823225-65823244 Msa0368860:intron 35.0%
TCCAATCAAAAAAAGAGTGG+TGG + chr3_1:65823228-65823247 Msa0368860:intron 35.0%
!!! ACCACCACTCTTTTTTTGAT+TGG - chr3_1:65823232-65823251 None:intergenic 35.0%
CAAAAAAAGAGTGGTGGTAA+TGG + chr3_1:65823234-65823253 Msa0368860:intron 35.0%
ATGTCAAAAGGATGGTAGTT+TGG + chr3_1:65823265-65823284 Msa0368860:intron 35.0%
AAAGTGAGTTCAATGTGGAA+TGG - chr3_1:65823368-65823387 None:intergenic 35.0%
AACATGTAGCTACTGCATTT+GGG + chr3_1:65823482-65823501 Msa0368860:intron 35.0%
CACATTTCTTTCTTCTCACA+AGG - chr3_1:65823532-65823551 None:intergenic 35.0%
CTTGTGAGAAGAAAGAAATG+TGG + chr3_1:65823530-65823549 Msa0368860:CDS 35.0%
TGAAGTGATAGTTTCAGCAT+TGG - chr3_1:65823673-65823692 None:intergenic 35.0%
TTGATGCAAATATCTGTCCT+GGG - chr3_1:65823762-65823781 None:intergenic 35.0%
! GTTTCACAGCTACAGAATTT+TGG + chr3_1:65823943-65823962 Msa0368860:CDS 35.0%
TATGTTAGAAGTGAGACCTT+GGG - chr3_1:65824218-65824237 None:intergenic 35.0%
TTATGTTAGAAGTGAGACCT+TGG - chr3_1:65824219-65824238 None:intergenic 35.0%
TAGGGATTCAGATTTACACA+CGG + chr3_1:65824290-65824309 Msa0368860:intron 35.0%
TAGTTTAGATCGAATGGTTG+AGG + chr3_1:65824394-65824413 Msa0368860:intron 35.0%
! GAAACTTGTTTCCGATGAAT+AGG + chr3_1:65824446-65824465 Msa0368860:intron 35.0%
GATCTCATACACCTATTCAT+CGG - chr3_1:65824460-65824479 None:intergenic 35.0%
GGTATGCCTAAGTCTATAAT+AGG - chr3_1:65824489-65824508 None:intergenic 35.0%
TTATAGACTTAGGCATACCT+TGG + chr3_1:65824490-65824509 Msa0368860:intron 35.0%
AATGTAGGTGTAGATAACCA+AGG - chr3_1:65824510-65824529 None:intergenic 35.0%
ATCGGTAAATAAAATCTCCG+AGG - chr3_1:65824695-65824714 None:intergenic 35.0%
AGAGGTCTAAACAATCAAGT+AGG - chr3_1:65824749-65824768 None:intergenic 35.0%
! TGGAAGCTGCTATTTATCTA+TGG + chr3_1:65824805-65824824 Msa0368860:CDS 35.0%
GTTCAACTACAAAGTCTTCA+TGG + chr3_1:65824868-65824887 Msa0368860:CDS 35.0%
TCAACTACAAAGTCTTCATG+GGG + chr3_1:65824870-65824889 Msa0368860:CDS 35.0%
TTCTAAGTTCCTTGAAGCAT+CGG + chr3_1:65824958-65824977 Msa0368860:CDS 35.0%
ACACAAACATTTCAGGATGT+TGG + chr3_1:65825111-65825130 Msa0368860:intron 35.0%
!!! AGAAAGCTACTCTAGAGTTT+TGG + chr3_1:65825146-65825165 Msa0368860:CDS 35.0%
ACATTCAGACAGATTTGCAT+TGG + chr3_1:65825233-65825252 Msa0368860:CDS 35.0%
!! ATTTGCATTGGTTCCTACAA+CGG + chr3_1:65825245-65825264 Msa0368860:CDS 35.0%
! CATTGATTAGTCCTGTAAGA+GGG + chr3_1:65825370-65825389 Msa0368860:CDS 35.0%
! ATTGATTAGTCCTGTAAGAG+GGG + chr3_1:65825371-65825390 Msa0368860:CDS 35.0%
! TGTTGTTGTTGTTGTTGTTG+TGG - chr3_1:65825413-65825432 None:intergenic 35.0%
GAGACTAAAACAAAGACATG+TGG + chr3_1:65825507-65825526 Msa0368860:CDS 35.0%
CCTCTAAATGCTGTGAAATT+CGG + chr3_1:65825582-65825601 Msa0368860:CDS 35.0%
GGTGAATGGATACAAATGAA+AGG - chr3_1:65825649-65825668 None:intergenic 35.0%
ATGGGTCTGTTAGAACTCAA+CGG - chr3_1:65821780-65821799 None:intergenic 40.0%
TGTCAGACACTAACAAGTGT+CGG - chr3_1:65822211-65822230 None:intergenic 40.0%
TGACGTATTAGTGTTGTGTC+TGG + chr3_1:65822289-65822308 Msa0368860:intron 40.0%
TCTGGTGTCTATGTATGTGT+CGG + chr3_1:65822307-65822326 Msa0368860:intron 40.0%
! ATGTATGTGTCGGTCTTCAT+AGG + chr3_1:65822317-65822336 Msa0368860:intron 40.0%
! TTGCTTGGTGAAGATATGTC+AGG + chr3_1:65822524-65822543 Msa0368860:CDS 40.0%
GATATGTCAGGTTCAGGAAA+AGG + chr3_1:65822536-65822555 Msa0368860:CDS 40.0%
TATGTCAGGTTCAGGAAAAG+GGG + chr3_1:65822538-65822557 Msa0368860:CDS 40.0%
CATCCTAGACATGATGGTAT+TGG - chr3_1:65823167-65823186 None:intergenic 40.0%
CAATACCATCATGTCTAGGA+TGG + chr3_1:65823165-65823184 Msa0368860:intron 40.0%
CAATACCATCCTAGACATGA+TGG - chr3_1:65823173-65823192 None:intergenic 40.0%
! CATCATGTCTAGGATGGTAT+TGG + chr3_1:65823171-65823190 Msa0368860:intron 40.0%
GAACATGTAGCTACTGCATT+TGG + chr3_1:65823481-65823500 Msa0368860:intron 40.0%
TCTTTCTTCTCACAAGGTAG+TGG - chr3_1:65823526-65823545 None:intergenic 40.0%
AGAAATGTGGCAAAGAGAGA+TGG + chr3_1:65823543-65823562 Msa0368860:CDS 40.0%
TCAGGAAATGTTTGCCAAGA+AGG - chr3_1:65823610-65823629 None:intergenic 40.0%
TCTTGGCAAACATTTCCTGA+TGG + chr3_1:65823610-65823629 Msa0368860:CDS 40.0%
TCCTGATGGAAAGAAACTTG+AGG + chr3_1:65823624-65823643 Msa0368860:CDS 40.0%
ACCTCAAGTTTCTTTCCATC+AGG - chr3_1:65823628-65823647 None:intergenic 40.0%
TCTAATACGGTTCATTCTGC+AGG + chr3_1:65823722-65823741 Msa0368860:intron 40.0%
GTTGATGCAAATATCTGTCC+TGG - chr3_1:65823763-65823782 None:intergenic 40.0%
CATGTTATCGAGTTTGCGAA+GGG - chr3_1:65823793-65823812 None:intergenic 40.0%
!! GGCACAATAGTAGTTCTAGT+CGG + chr3_1:65823845-65823864 Msa0368860:intron 40.0%
!! CTGAATTGACTTGCGAAAAG+AGG - chr3_1:65824012-65824031 None:intergenic 40.0%
! CTTTTCGCAAGTCAATTCAG+CGG + chr3_1:65824012-65824031 Msa0368860:CDS 40.0%
GTCTATCAACAGCATTGCTT+TGG + chr3_1:65824154-65824173 Msa0368860:CDS 40.0%
GGAAGTTCCTGAGTCATATT+TGG + chr3_1:65824184-65824203 Msa0368860:CDS 40.0%
AGGGTTTCCAAATATGACTC+AGG - chr3_1:65824194-65824213 None:intergenic 40.0%
ATGTTAGAAGTGAGACCTTG+GGG - chr3_1:65824217-65824236 None:intergenic 40.0%
CTGTAAGATGCAATTACTGC+AGG + chr3_1:65824424-65824443 Msa0368860:intron 40.0%
ACTGGAGAATATTTCACAGG+AGG - chr3_1:65824590-65824609 None:intergenic 40.0%
CACATCAGATCAATTCTCCT+CGG + chr3_1:65824719-65824738 Msa0368860:CDS 40.0%
GTGCAATATGTTCAGAAGAG+AGG - chr3_1:65824767-65824786 None:intergenic 40.0%
GACTTTGTAGTTGAACGGTT+GGG - chr3_1:65824864-65824883 None:intergenic 40.0%
AGACTTTGTAGTTGAACGGT+TGG - chr3_1:65824865-65824884 None:intergenic 40.0%
CAACTACAAAGTCTTCATGG+GGG + chr3_1:65824871-65824890 Msa0368860:CDS 40.0%
GTTAAGGACTTCATGCTTGA+TGG + chr3_1:65824897-65824916 Msa0368860:CDS 40.0%
! AGGTAGTTTGAGTTAAGCCA+GGG - chr3_1:65824986-65825005 None:intergenic 40.0%
! AAGGTAGTTTGAGTTAAGCC+AGG - chr3_1:65824987-65825006 None:intergenic 40.0%
TGGCTTAACTCAAACTACCT+TGG + chr3_1:65824986-65825005 Msa0368860:CDS 40.0%
GAATTGGAACCTTGTTGCAT+TGG - chr3_1:65825025-65825044 None:intergenic 40.0%
!! TTTGCATTGGTTCCTACAAC+GGG + chr3_1:65825246-65825265 Msa0368860:CDS 40.0%
CCTCTTACAGGACTAATCAA+TGG - chr3_1:65825372-65825391 None:intergenic 40.0%
! CCATTGATTAGTCCTGTAAG+AGG + chr3_1:65825369-65825388 Msa0368860:CDS 40.0%
! TTGTTGTTGTTGTGGAGGAA+AGG - chr3_1:65825405-65825424 None:intergenic 40.0%
! TGTTGTTGTTGTTGTTGTGG+AGG - chr3_1:65825410-65825429 None:intergenic 40.0%
CCGAATTTCACAGCATTTAG+AGG - chr3_1:65825585-65825604 None:intergenic 40.0%
!! GACGTGTGGCTTTTAGGAAA+AGG - chr3_1:65821657-65821676 None:intergenic 45.0%
! GATGAAGACGTGTGGCTTTT+AGG - chr3_1:65821663-65821682 None:intergenic 45.0%
! GTTGTGATGATGAAGACGTG+TGG - chr3_1:65821671-65821690 None:intergenic 45.0%
TGGGTCTGTTAGAACTCAAC+GGG - chr3_1:65821779-65821798 None:intergenic 45.0%
CAAATGGTACTCCTCTTGGT+TGG + chr3_1:65821987-65822006 Msa0368860:CDS 45.0%
TTGAGAATAGGCCAACCAAG+AGG - chr3_1:65822001-65822020 None:intergenic 45.0%
! AGAACAAGAACGCTTTGAGC+TGG - chr3_1:65822035-65822054 None:intergenic 45.0%
GGTGAAGATATGTCAGGTTC+AGG + chr3_1:65822530-65822549 Msa0368860:CDS 45.0%
AAAAGGGGTTTGCACTGCTT+TGG + chr3_1:65822553-65822572 Msa0368860:CDS 45.0%
TCCACTAGTATTGTGACACG+TGG + chr3_1:65823137-65823156 Msa0368860:intron 45.0%
!! TGTCTAGGATGGTATTGGTG+TGG + chr3_1:65823176-65823195 Msa0368860:intron 45.0%
GGCATGTGTCTCGATACTAT+TGG + chr3_1:65823197-65823216 Msa0368860:intron 45.0%
CTACTGCATTTGGGCAACTT+TGG + chr3_1:65823491-65823510 Msa0368860:CDS 45.0%
TGTGGCAAAGAGAGATGGAA+TGG + chr3_1:65823548-65823567 Msa0368860:CDS 45.0%
! TTCTGCAGGTAATGACTTGC+AGG + chr3_1:65823736-65823755 Msa0368860:intron 45.0%
GCATGTTATCGAGTTTGCGA+AGG - chr3_1:65823794-65823813 None:intergenic 45.0%
!! ATTGTAGCCGCTGATTCAGA+AGG + chr3_1:65823981-65824000 Msa0368860:CDS 45.0%
CAGCATTGCTTTGGCTGAAA+TGG + chr3_1:65824163-65824182 Msa0368860:CDS 45.0%
ATATTTGGAAACCCTCCCCA+AGG + chr3_1:65824199-65824218 Msa0368860:CDS 45.0%
CAGAATGGAAGAACTTGCCT+CGG + chr3_1:65824675-65824694 Msa0368860:intron 45.0%
GATAAATAGCAGCTTCCACG+CGG - chr3_1:65824803-65824822 None:intergenic 45.0%
GTAGTTGAACGGTTGGGATT+AGG - chr3_1:65824858-65824877 None:intergenic 45.0%
TACAAAGTCTTCATGGGGGA+TGG + chr3_1:65824875-65824894 Msa0368860:CDS 45.0%
TTGGATCTTGCTGGTATCCA+AGG - chr3_1:65825006-65825025 None:intergenic 45.0%
CTTGTTGCATTGGATCTTGC+TGG - chr3_1:65825015-65825034 None:intergenic 45.0%
CAGCAAGATCCAATGCAACA+AGG + chr3_1:65825013-65825032 Msa0368860:CDS 45.0%
!!! CTCTAGAGTTTTGGAGAGCA+TGG + chr3_1:65825155-65825174 Msa0368860:CDS 45.0%
GAAACCACATTACCCGTTGT+AGG - chr3_1:65825261-65825280 None:intergenic 45.0%
CCTGAGACAGACACTGAAAA+TGG - chr3_1:65825300-65825319 None:intergenic 45.0%
! CCATTTTCAGTGTCTGTCTC+AGG + chr3_1:65825297-65825316 Msa0368860:CDS 45.0%
ACTCCACACAAAGCAGCATT+CGG + chr3_1:65825321-65825340 Msa0368860:CDS 45.0%
GGACTAATCAATGGCACAGA+AGG - chr3_1:65825363-65825382 None:intergenic 45.0%
GACATGTGGCAATTCAACTG+AGG + chr3_1:65825521-65825540 Msa0368860:CDS 45.0%
GGCAATTCAACTGAGGTCAA+TGG + chr3_1:65825528-65825547 Msa0368860:CDS 45.0%
AGACTGACACCTCTGATCGA+AGG + chr3_1:65822173-65822192 Msa0368860:intron 50.0%
CCATACACACCTTCGATCAG+AGG - chr3_1:65822185-65822204 None:intergenic 50.0%
! CCTCTGATCGAAGGTGTGTA+TGG + chr3_1:65822182-65822201 Msa0368860:intron 50.0%
GCCACGTGTCACAATACTAG+TGG - chr3_1:65823141-65823160 None:intergenic 50.0%
TTATCGAGTTTGCGAAGGGC+TGG - chr3_1:65823789-65823808 None:intergenic 50.0%
!! AGCCGCTGATTCAGAAGGTT+CGG + chr3_1:65823986-65824005 Msa0368860:CDS 50.0%
TTCAGCGGCAAGAAGAGAAG+TGG + chr3_1:65824027-65824046 Msa0368860:CDS 50.0%
TTCTCACTGAGACCTGCTTC+GGG - chr3_1:65824074-65824093 None:intergenic 50.0%
CTTCTCACTGAGACCTGCTT+CGG - chr3_1:65824075-65824094 None:intergenic 50.0%
TAGAAGTGAGACCTTGGGGA+GGG - chr3_1:65824213-65824232 None:intergenic 50.0%
TTAGAAGTGAGACCTTGGGG+AGG - chr3_1:65824214-65824233 None:intergenic 50.0%
ACAATCAAGTAGGCACTCCG+AGG - chr3_1:65824739-65824758 None:intergenic 50.0%
GTCTTCATGGGGGATGGTTA+AGG + chr3_1:65824881-65824900 Msa0368860:CDS 50.0%
GGTTCCTACAACGGGTAATG+TGG + chr3_1:65825254-65825273 Msa0368860:CDS 50.0%
GGCACAGAAGGCGAAAACTT+AGG - chr3_1:65825351-65825370 None:intergenic 50.0%
! AGGTAATGACTTGCAGGCCC+AGG + chr3_1:65823742-65823761 Msa0368860:intron 55.0%
GGCCGAACCTTCTGAATCAG+CGG - chr3_1:65823991-65824010 None:intergenic 55.0%
AGCGGCAAGAAGAGAAGTGG+TGG + chr3_1:65824030-65824049 Msa0368860:CDS 55.0%
TGAGACCTGCTTCGGGAACA+CGG - chr3_1:65824067-65824086 None:intergenic 55.0%
ACTCGAGATTGCAAACCGCG+TGG + chr3_1:65824785-65824804 Msa0368860:CDS 55.0%
TGGGATTAGGCGTGGATCTG+TGG - chr3_1:65824845-65824864 None:intergenic 55.0%
TGAACGGTTGGGATTAGGCG+TGG - chr3_1:65824853-65824872 None:intergenic 55.0%
!! TCCTTGAAGCATCGGTTCCC+TGG + chr3_1:65824966-65824985 Msa0368860:CDS 55.0%
!! GTGCCGAATGCTGCTTTGTG+TGG - chr3_1:65825327-65825346 None:intergenic 55.0%
GGAGTTCTCTCCCCTCTTAC+AGG - chr3_1:65825384-65825403 None:intergenic 55.0%
AACGTCAAACCTCAGCGTCG+CGG + chr3_1:65825444-65825463 Msa0368860:CDS 55.0%
CGAGTTTGCGAAGGGCTGGA+AGG - chr3_1:65823785-65823804 None:intergenic 60.0%
TGCTTCGGGAACACGGGGAA+CGG - chr3_1:65824060-65824079 None:intergenic 60.0%
AGACCTGCTTCGGGAACACG+GGG - chr3_1:65824065-65824084 None:intergenic 60.0%
GAGACCTGCTTCGGGAACAC+GGG - chr3_1:65824066-65824085 None:intergenic 60.0%
CGCGCGCTTGCAGAGAATGT+AGG - chr3_1:65824525-65824544 None:intergenic 60.0%
GCCAGGGAACCGATGCTTCA+AGG - chr3_1:65824970-65824989 None:intergenic 60.0%
AAACCTCAGCGTCGCGGCTT+TGG + chr3_1:65825450-65825469 Msa0368860:CDS 60.0%
CTTCGGGAACACGGGGAACG+GGG - chr3_1:65824058-65824077 None:intergenic 65.0%
GCTTCGGGAACACGGGGAAC+GGG - chr3_1:65824059-65824078 None:intergenic 65.0%
GTTCCCCGTGTTCCCGAAGC+AGG + chr3_1:65824059-65824078 Msa0368860:CDS 65.0%
ACACCAAAGCCGCGACGCTG+AGG - chr3_1:65825456-65825475 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 65821537 65825795 65821537 ID=Msa0368860;Name=Msa0368860
chr3_1 mRNA 65821537 65825795 65821537 ID=Msa0368860-mRNA-1;Parent=Msa0368860;Name=Msa0368860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=302|1|1|1|1|1|7|187|591
chr3_1 exon 65821537 65822136 65821537 ID=Msa0368860-mRNA-1:exon:13257;Parent=Msa0368860-mRNA-1
chr3_1 exon 65822489 65822605 65822489 ID=Msa0368860-mRNA-1:exon:13258;Parent=Msa0368860-mRNA-1
chr3_1 exon 65823491 65823645 65823491 ID=Msa0368860-mRNA-1:exon:13259;Parent=Msa0368860-mRNA-1
chr3_1 exon 65823744 65823818 65823744 ID=Msa0368860-mRNA-1:exon:13260;Parent=Msa0368860-mRNA-1
chr3_1 exon 65823930 65824220 65823930 ID=Msa0368860-mRNA-1:exon:13261;Parent=Msa0368860-mRNA-1
chr3_1 exon 65824678 65825034 65824678 ID=Msa0368860-mRNA-1:exon:13262;Parent=Msa0368860-mRNA-1
chr3_1 exon 65825126 65825795 65825126 ID=Msa0368860-mRNA-1:exon:13263;Parent=Msa0368860-mRNA-1
chr3_1 five_prime_UTR 65821537 65821838 65821537 ID=Msa0368860-mRNA-1:five_prime_utr;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65821839 65822136 65821839 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65822489 65822605 65822489 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65823491 65823645 65823491 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65823744 65823818 65823744 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65823930 65824220 65823930 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65824678 65825034 65824678 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 CDS 65825126 65825608 65825126 ID=Msa0368860-mRNA-1:cds;Parent=Msa0368860-mRNA-1
chr3_1 three_prime_UTR 65825609 65825795 65825609 ID=Msa0368860-mRNA-1:three_prime_utr;Parent=Msa0368860-mRNA-1
Gene Sequence

>Msa0368860

ATGGAAACTTTATCTAAAAACTCTCAAAAGAAAAAAGATGGGTCTCGTTCTTCTTGTGTCACTGATTCAAGTGTAGAGTCTAGAACTACAAGTTTCAGTGGATCTAATTCAACCTCTTCAATTTCTACTTCAGAAGTTGAAGCTAAATCAAATGGTACTCCTCTTGGTTGGCCTATTCTCAAAGCTACACTTTCCAGCTCAAAGCGTTCTTGTTCTTCTGATGACAAAGAAAACAAACACAAATCAAACTTGGAAGTGGAACGCACAAAATGTACAATTATGGATGTAAAAGTGTCAGATGTTGATATGATGAAGGAAAGATTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCAGGAAAAGGGGTTTGCACTGCTTTGGCAATATCTAATGCCATTACTAATCTTTGTGCTACTGCATTTGGGCAACTTTGGAGACTAGAACCACTACCTTGTGAGAAGAAAGAAATGTGGCAAAGAGAGATGGAATGGCTTGTTAGTGTCAGTGATCACATTGTTGAATTAATACCTTCTTGGCAAACATTTCCTGATGGAAAGAAACTTGAGGTAATGACTTGCAGGCCCAGGACAGATATTTGCATCAACCTTCCAGCCCTTCGCAAACTCGATAACATGCTACTCGAAATATTAGACAGTTTCACAGCTACAGAATTTTGGTATGTTGATCAAGGAATTGTAGCCGCTGATTCAGAAGGTTCGGCCTCTTTTCGCAAGTCAATTCAGCGGCAAGAAGAGAAGTGGTGGCTCCCCGTTCCCCGTGTTCCCGAAGCAGGTCTCAGTGAGAAGTCAAGAAAGAAGTTGAATCACTCTAGAGAAAGTGCAAGTCAAATTCTCAAAGCAGCTATGTCTATCAACAGCATTGCTTTGGCTGAAATGGAAGTTCCTGAGTCATATTTGGAAACCCTCCCCAAGAATGGAAGAACTTGCCTCGGAGATTTTATTTACCGATACATCACATCAGATCAATTCTCCTCGGAGTGCCTACTTGATTGTTTAGACCTCTCTTCTGAACATATTGCACTCGAGATTGCAAACCGCGTGGAAGCTGCTATTTATCTATGGCGTCGAAGATCTAACCACAGATCCACGCCTAATCCCAACCGTTCAACTACAAAGTCTTCATGGGGGATGGTTAAGGACTTCATGCTTGATGGAGATAAGAGAGAATTGCTAGCACATAGAGCTGAAAACATTCTAAGTTCCTTGAAGCATCGGTTCCCTGGCTTAACTCAAACTACCTTGGATACCAGCAAGATCCAATGCAACAAGGATGTTGGAAAATCTATTCTAGAAAGCTACTCTAGAGTTTTGGAGAGCATGGCTTATAACATTATATCACGCATTGATGATTTGTTATACGTGGATGAGTTAACAAAACATTCAGACAGATTTGCATTGGTTCCTACAACGGGTAATGTGGTTTCTCAGCAGATTTTGCGTCCATTTTCAGTGTCTGTCTCAGGCACTCCACACAAAGCAGCATTCGGCACGCCTAAGTTTTCGCCTTCTGTGCCATTGATTAGTCCTGTAAGAGGGGAGAGAACTCCTTTCCTCCACAACAACAACAACAACAACAACAATGTCAACAACGTCAAACCTCAGCGTCGCGGCTTTGGTGTGAGAAGAGCTTTGTCAAATTATCTTGGTGTTGAGACTAAAACAAAGACATGTGGCAATTCAACTGAGGTCAATGGTTCAAACCCAAGTAACAAGAAAACAGAACAACCTCTAAATGCTGTGAAATTCGGTTGA

Protein sequence

>Msa0368860

METLSKNSQKKKDGSRSSCVTDSSVESRTTSFSGSNSTSSISTSEVEAKSNGTPLGWPILKATLSSSKRSCSSDDKENKHKSNLEVERTKCTIMDVKVSDVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATAFGQLWRLEPLPCEKKEMWQREMEWLVSVSDHIVELIPSWQTFPDGKKLEVMTCRPRTDICINLPALRKLDNMLLEILDSFTATEFWYVDQGIVAADSEGSASFRKSIQRQEEKWWLPVPRVPEAGLSEKSRKKLNHSRESASQILKAAMSINSIALAEMEVPESYLETLPKNGRTCLGDFIYRYITSDQFSSECLLDCLDLSSEHIALEIANRVEAAIYLWRRRSNHRSTPNPNRSTTKSSWGMVKDFMLDGDKRELLAHRAENILSSLKHRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAYNIISRIDDLLYVDELTKHSDRFALVPTTGNVVSQQILRPFSVSVSGTPHKAAFGTPKFSPSVPLISPVRGERTPFLHNNNNNNNNVNNVKPQRRGFGVRRALSNYLGVETKTKTCGNSTEVNGSNPSNKKTEQPLNAVKFG*