Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0274320 | XP_003593807.1 | 97.619 | 294 | 7 | 0 | 1 | 294 | 1 | 294 | 0.0 | 585 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0274320 | sp|P58465|CTDSL_MOUSE | 46.626 | 163 | 86 | 1 | 106 | 268 | 105 | 266 | 2.20e-37 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0274320 | G7ILM8 | 97.619 | 294 | 7 | 0 | 1 | 294 | 1 | 294 | 0.0 | 585 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0016040 | Msa0274320 | 0.802636 | 5.107791e-49 | -8.615850e-47 |
Msa0038940 | Msa0274320 | 0.801377 | 9.265131e-49 | -8.615850e-47 |
Msa0048510 | Msa0274320 | 0.813504 | 2.474875e-51 | -8.615850e-47 |
Msa0062340 | Msa0274320 | 0.815621 | 8.416825e-52 | -8.615850e-47 |
Msa0077340 | Msa0274320 | 0.804406 | 2.193704e-49 | -8.615850e-47 |
Msa0077560 | Msa0274320 | 0.849596 | 2.922168e-60 | -8.615850e-47 |
Msa0094780 | Msa0274320 | 0.819966 | 8.797460e-53 | -8.615850e-47 |
Msa0115550 | Msa0274320 | 0.801927 | 7.146967e-49 | -8.615850e-47 |
Msa0125360 | Msa0274320 | 0.802611 | 5.168534e-49 | -8.615850e-47 |
Msa0140280 | Msa0274320 | 0.802679 | 5.003718e-49 | -8.615850e-47 |
Msa0181650 | Msa0274320 | 0.804683 | 1.920455e-49 | -8.615850e-47 |
Msa0190570 | Msa0274320 | 0.813205 | 2.879884e-51 | -8.615850e-47 |
Msa0190730 | Msa0274320 | 0.806953 | 6.403481e-50 | -8.615850e-47 |
Msa0194200 | Msa0274320 | 0.929425 | 7.079159e-93 | -8.615850e-47 |
Msa0200050 | Msa0274320 | 0.812435 | 4.245697e-51 | -8.615850e-47 |
Msa0242590 | Msa0274320 | 0.814223 | 1.718665e-51 | -8.615850e-47 |
Msa0269210 | Msa0274320 | 0.836421 | 9.453853e-57 | -8.615850e-47 |
Msa0272260 | Msa0274320 | 0.803819 | 2.906177e-49 | -8.615850e-47 |
Msa0274320 | Msa0280790 | 0.807764 | 4.310580e-50 | -8.615850e-47 |
Msa0274320 | Msa0307270 | 0.814939 | 1.193547e-51 | -8.615850e-47 |
Msa0274320 | Msa0343010 | 0.807379 | 5.201602e-50 | -8.615850e-47 |
Msa0274320 | Msa0371270 | 0.804959 | 1.681350e-49 | -8.615850e-47 |
Msa0274320 | Msa0377710 | 0.822021 | 2.959825e-53 | -8.615850e-47 |
Msa0274320 | Msa0380670 | 0.809512 | 1.824393e-50 | -8.615850e-47 |
Msa0274320 | Msa0409830 | 0.805382 | 1.371373e-49 | -8.615850e-47 |
Msa0274320 | Msa0419540 | 0.822230 | 2.647850e-53 | -8.615850e-47 |
Msa0274320 | Msa0432010 | 0.835455 | 1.661872e-56 | -8.615850e-47 |
Msa0274320 | Msa0436330 | 0.813655 | 2.293398e-51 | -8.615850e-47 |
Msa0274320 | Msa0454560 | 0.800806 | 1.212223e-48 | -8.615850e-47 |
Msa0274320 | Msa0465530 | 0.808550 | 2.930748e-50 | -8.615850e-47 |
Msa0274320 | Msa0481890 | 0.860154 | 2.516467e-63 | -8.615850e-47 |
Msa0274320 | Msa0502510 | 0.830010 | 3.736265e-55 | -8.615850e-47 |
Msa0274320 | Msa0511470 | 0.807259 | 5.514854e-50 | -8.615850e-47 |
Msa0274320 | Msa0520870 | 0.809053 | 2.287832e-50 | -8.615850e-47 |
Msa0274320 | Msa0529030 | 0.805210 | 1.490268e-49 | -8.615850e-47 |
Msa0274320 | Msa0531960 | 0.820588 | 6.335372e-53 | -8.615850e-47 |
Msa0274320 | Msa0567170 | 0.816141 | 6.444099e-52 | -8.615850e-47 |
Msa0274320 | Msa0580370 | 0.808283 | 3.342196e-50 | -8.615850e-47 |
Msa0274320 | Msa0588920 | 0.805117 | 1.558760e-49 | -8.615850e-47 |
Msa0274320 | Msa0607800 | 0.820399 | 7.000704e-53 | -8.615850e-47 |
Msa0274320 | Msa0621710 | 0.824177 | 9.297017e-54 | -8.615850e-47 |
Msa0274320 | Msa0648040 | 0.804602 | 1.996499e-49 | -8.615850e-47 |
Msa0274320 | Msa0657700 | 0.800144 | 1.654025e-48 | -8.615850e-47 |
Msa0274320 | Msa0658640 | 0.808493 | 3.014370e-50 | -8.615850e-47 |
Msa0274320 | Msa0666700 | 0.819539 | 1.101456e-52 | -8.615850e-47 |
Msa0274320 | Msa0682770 | 0.800880 | 1.171026e-48 | -8.615850e-47 |
Msa0274320 | Msa0703600 | 0.809050 | 2.291180e-50 | -8.615850e-47 |
Msa0274320 | Msa0709200 | 0.809409 | 1.919049e-50 | -8.615850e-47 |
Msa0274320 | Msa0709440 | 0.859794 | 3.231140e-63 | -8.615850e-47 |
Msa0274320 | Msa0714520 | 0.830449 | 2.917804e-55 | -8.615850e-47 |
Msa0274320 | Msa0714790 | 0.811403 | 7.124078e-51 | -8.615850e-47 |
Msa0274320 | Msa0716890 | 0.813529 | 2.444189e-51 | -8.615850e-47 |
Msa0274320 | Msa0735780 | 0.833411 | 5.417811e-56 | -8.615850e-47 |
Msa0274320 | Msa0743440 | 0.837832 | 4.118877e-57 | -8.615850e-47 |
Msa0274320 | Msa0754430 | 0.800094 | 1.693116e-48 | -8.615850e-47 |
Msa0274320 | Msa0754450 | 0.801935 | 7.119049e-49 | -8.615850e-47 |
Msa0274320 | Msa0756820 | 0.801050 | 1.081180e-48 | -8.615850e-47 |
Msa0274320 | Msa0758030 | 0.803078 | 4.139213e-49 | -8.615850e-47 |
Msa0274320 | Msa0758650 | 0.815537 | 8.789007e-52 | -8.615850e-47 |
Msa0274320 | Msa0761670 | 0.810835 | 9.461049e-51 | -8.615850e-47 |
Msa0274320 | Msa0773630 | 0.802950 | 4.398061e-49 | -8.615850e-47 |
Msa0274320 | Msa0780910 | 0.810886 | 9.221938e-51 | -8.615850e-47 |
Msa0274320 | Msa0795870 | 0.809942 | 1.474235e-50 | -8.615850e-47 |
Msa0274320 | Msa0804000 | 0.800185 | 1.622911e-48 | -8.615850e-47 |
Msa0274320 | Msa0805680 | 0.811666 | 6.246270e-51 | -8.615850e-47 |
Msa0274320 | Msa0811020 | 0.809988 | 1.440894e-50 | -8.615850e-47 |
Msa0274320 | Msa0824450 | 0.828727 | 7.656012e-55 | -8.615850e-47 |
Msa0274320 | Msa0828970 | 0.804658 | 1.944036e-49 | -8.615850e-47 |
Msa0274320 | Msa0833650 | 0.801152 | 1.030518e-48 | -8.615850e-47 |
Msa0274320 | Msa0837460 | 0.801405 | 9.145452e-49 | -8.615850e-47 |
Msa0274320 | Msa0855230 | 0.809969 | 1.455020e-50 | -8.615850e-47 |
Msa0274320 | Msa0863620 | 0.815326 | 9.791435e-52 | -8.615850e-47 |
Msa0274320 | Msa0867110 | 0.801697 | 7.968946e-49 | -8.615850e-47 |
Msa0274320 | Msa0879920 | 0.800077 | 1.706905e-48 | -8.615850e-47 |
Msa0274320 | Msa0931590 | 0.817654 | 2.948051e-52 | -8.615850e-47 |
Msa0274320 | Msa0980290 | 0.802762 | 4.809942e-49 | -8.615850e-47 |
Msa0274320 | Msa1037540 | 0.818515 | 1.883137e-52 | -8.615850e-47 |
Msa0274320 | Msa1059020 | 0.806214 | 9.169075e-50 | -8.615850e-47 |
Msa0274320 | Msa1072940 | 0.820247 | 7.586494e-53 | -8.615850e-47 |
Msa0274320 | Msa1084530 | 0.864459 | 1.197656e-64 | -8.615850e-47 |
Msa0274320 | Msa1092420 | 0.823508 | 1.333769e-53 | -8.615850e-47 |
Msa0274320 | Msa1125820 | 0.862515 | 4.798131e-64 | -8.615850e-47 |
Msa0274320 | Msa1125990 | 0.861666 | 8.740515e-64 | -8.615850e-47 |
Msa0274320 | Msa1132530 | 0.811394 | 7.157405e-51 | -8.615850e-47 |
Msa0274320 | Msa1132840 | 0.809581 | 1.763231e-50 | -8.615850e-47 |
Msa0274320 | Msa1147910 | 0.811472 | 6.883360e-51 | -8.615850e-47 |
Msa0274320 | Msa1159590 | 0.814133 | 1.798785e-51 | -8.615850e-47 |
Msa0274320 | Msa1160920 | 0.823200 | 1.574626e-53 | -8.615850e-47 |
Msa0274320 | Msa1171290 | 0.862749 | 4.064510e-64 | -8.615850e-47 |
Msa0274320 | Msa1192570 | 0.816559 | 5.194841e-52 | -8.615850e-47 |
Msa0274320 | Msa1208950 | 0.800393 | 1.472232e-48 | -8.615850e-47 |
Msa0274320 | Msa1215870 | 0.826195 | 3.099304e-54 | -8.615850e-47 |
Msa0274320 | Msa1223390 | 0.800451 | 1.432397e-48 | -8.615850e-47 |
Msa0274320 | Msa1226520 | 0.806802 | 6.892168e-50 | -8.615850e-47 |
Msa0274320 | Msa1254540 | 0.816911 | 4.333098e-52 | -8.615850e-47 |
Msa0274320 | Msa1261050 | 0.804482 | 2.114853e-49 | -8.615850e-47 |
Msa0274320 | Msa1263780 | 0.816925 | 4.301086e-52 | -8.615850e-47 |
Msa0274320 | Msa1300460 | 0.808145 | 3.576751e-50 | -8.615850e-47 |
Msa0274320 | Msa1307630 | 0.829224 | 5.801988e-55 | -8.615850e-47 |
Msa0274320 | Msa1332950 | 0.810100 | 1.363150e-50 | -8.615850e-47 |
Msa0274320 | Msa1343180 | 0.805375 | 1.376153e-49 | -8.615850e-47 |
Msa0274320 | Msa1366150 | 0.829031 | 6.462326e-55 | -8.615850e-47 |
Msa0274320 | Msa1368750 | 0.835857 | 1.314656e-56 | -8.615850e-47 |
Msa0274320 | Msa1374790 | 0.826028 | 3.396842e-54 | -8.615850e-47 |
Msa0274320 | Msa1380120 | 0.801260 | 9.794254e-49 | -8.615850e-47 |
Msa0274320 | Msa1384150 | 0.813447 | 2.547793e-51 | -8.615850e-47 |
Msa0274320 | Msa1387440 | 0.838474 | 2.814745e-57 | -8.615850e-47 |
Msa0274320 | Msa1405460 | 0.803710 | 3.061053e-49 | -8.615850e-47 |
Msa0274320 | Msa1429070 | 0.802237 | 6.171809e-49 | -8.615850e-47 |
Msa0274320 | Msa1437930 | 0.801767 | 7.709707e-49 | -8.615850e-47 |
Msa0274320 | Msa1446100 | 0.812891 | 3.375121e-51 | -8.615850e-47 |
Msa0274320 | Msa1451820 | 0.829993 | 3.771703e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0274320 | MtrunA17_Chr2g0284551 | 97.619 | 294 | 7 | 0 | 1 | 294 | 1 | 294 | 0.0 | 585 |
Msa0274320 | MtrunA17_Chr5g0419741 | 37.714 | 175 | 103 | 2 | 101 | 274 | 123 | 292 | 1.49e-28 | 111 |
Msa0274320 | MtrunA17_Chr3g0078241 | 41.143 | 175 | 99 | 3 | 98 | 269 | 284 | 457 | 1.16e-26 | 108 |
Msa0274320 | MtrunA17_Chr2g0303951 | 36.325 | 234 | 138 | 5 | 54 | 280 | 240 | 469 | 4.79e-26 | 107 |
Msa0274320 | MtrunA17_Chr3g0122541 | 40.972 | 144 | 83 | 2 | 109 | 251 | 280 | 422 | 1.21e-25 | 105 |
Msa0274320 | MtrunA17_Chr3g0122521 | 37.086 | 151 | 93 | 2 | 102 | 251 | 12 | 161 | 1.09e-22 | 93.2 |
Msa0274320 | MtrunA17_Chr3g0113611 | 38.217 | 157 | 78 | 4 | 106 | 243 | 70 | 226 | 2.91e-20 | 88.2 |
Msa0274320 | MtrunA17_Chr5g0437111 | 37.580 | 157 | 79 | 4 | 106 | 243 | 96 | 252 | 5.08e-17 | 79.7 |
Msa0274320 | MtrunA17_Chr5g0446321 | 31.210 | 157 | 89 | 2 | 91 | 244 | 172 | 312 | 8.08e-16 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0274320 | AT5G45700.1 | 43.463 | 283 | 146 | 6 | 1 | 280 | 1 | 272 | 1.96e-62 | 199 |
Msa0274320 | AT1G29780.1 | 56.886 | 167 | 71 | 1 | 107 | 272 | 49 | 215 | 6.82e-59 | 188 |
Msa0274320 | AT1G29770.1 | 52.571 | 175 | 81 | 2 | 107 | 279 | 102 | 276 | 4.39e-57 | 185 |
Msa0274320 | AT5G11860.3 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 2.63e-27 | 108 |
Msa0274320 | AT5G11860.5 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 2.63e-27 | 108 |
Msa0274320 | AT5G11860.1 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 2.63e-27 | 108 |
Msa0274320 | AT5G11860.4 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 2.63e-27 | 108 |
Msa0274320 | AT5G11860.2 | 37.576 | 165 | 101 | 2 | 109 | 272 | 113 | 276 | 2.63e-27 | 108 |
Msa0274320 | AT5G46410.2 | 39.884 | 173 | 102 | 2 | 109 | 280 | 285 | 456 | 3.49e-25 | 104 |
Msa0274320 | AT5G46410.3 | 39.884 | 173 | 102 | 2 | 109 | 280 | 282 | 453 | 3.83e-25 | 104 |
Msa0274320 | AT5G46410.1 | 39.884 | 173 | 102 | 2 | 109 | 280 | 282 | 453 | 3.83e-25 | 104 |
Msa0274320 | AT4G18140.4 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.44e-23 | 100 |
Msa0274320 | AT4G18140.6 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.44e-23 | 100 |
Msa0274320 | AT4G18140.5 | 39.884 | 173 | 102 | 2 | 109 | 280 | 270 | 441 | 1.44e-23 | 100 |
Msa0274320 | AT4G18140.1 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 4.13e-23 | 99.0 |
Msa0274320 | AT4G18140.2 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 4.13e-23 | 99.0 |
Msa0274320 | AT4G18140.3 | 40.606 | 165 | 96 | 2 | 109 | 272 | 270 | 433 | 5.88e-23 | 98.2 |
Msa0274320 | AT1G55900.2 | 31.792 | 173 | 99 | 2 | 91 | 260 | 171 | 327 | 4.60e-19 | 86.7 |
Msa0274320 | AT1G55900.1 | 31.792 | 173 | 99 | 2 | 91 | 260 | 171 | 327 | 4.64e-19 | 86.7 |
Msa0274320 | AT3G55960.1 | 36.184 | 152 | 78 | 4 | 106 | 238 | 96 | 247 | 2.38e-16 | 78.2 |
Find 59 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAAGCTTCTCACAAAAC+TGG | 0.265788 | 2_3:+6168536 | Msa0274320:CDS |
AGGGAAGCTTGTGAAAGATT+TGG | 0.293676 | 2_3:+6169007 | Msa0274320:CDS |
TTATTTCGCATCGGCTTTAT+AGG | 0.299291 | 2_3:+6168964 | Msa0274320:CDS |
GGGAAGCTTGTGAAAGATTT+GGG | 0.307134 | 2_3:+6169008 | Msa0274320:CDS |
GCTTAAGGAGTATGCGAGTT+TGG | 0.339130 | 2_3:+6168914 | Msa0274320:CDS |
GGTTGATTCGAAAACGAAAC+TGG | 0.341731 | 2_3:-6169077 | None:intergenic |
GTTAATGTCTTTGATTGATT+TGG | 0.348380 | 2_3:-6168430 | None:intergenic |
TTCCACCTTCAATATCTAAT+CGG | 0.378188 | 2_3:+6168697 | Msa0274320:CDS |
TATTTCGCATCGGCTTTATA+GGG | 0.378274 | 2_3:+6168965 | Msa0274320:CDS |
GCCGCGACGACGTTCTTTAT+CGG | 0.415564 | 2_3:-6168477 | None:intergenic |
TGGACCGGTTGGACCGGAAC+GGG | 0.415871 | 2_3:+6168940 | Msa0274320:CDS |
ATGCTTGTGATCGTGAGCTT+TGG | 0.419497 | 2_3:+6169135 | Msa0274320:CDS |
TTAATCAAAATCGCATTCTC+AGG | 0.423966 | 2_3:-6169098 | None:intergenic |
GTAGTCCGGCCGGTGATTGA+TGG | 0.425963 | 2_3:+6168795 | Msa0274320:CDS |
CTCGTCTCAGTTCTTCAAAT+CGG | 0.429741 | 2_3:+6168565 | Msa0274320:CDS |
GATCTGATCAAAGGCGTGTC+TGG | 0.434592 | 2_3:+6169254 | Msa0274320:CDS |
TCTTGATTTAGATGAAACTT+TGG | 0.436405 | 2_3:+6168731 | Msa0274320:CDS |
TGTGGGAAGGGATTTGAAGA+AGG | 0.467439 | 2_3:+6169034 | Msa0274320:CDS |
TAAACCCGTTCCGGTCCAAC+CGG | 0.468555 | 2_3:-6168944 | None:intergenic |
GATGCGAAATAAACCCGTTC+CGG | 0.471268 | 2_3:-6168953 | None:intergenic |
ACCGGGGATTGATGAATTGT+TGG | 0.482144 | 2_3:+6168848 | Msa0274320:CDS |
GTGGACCGGTTGGACCGGAA+CGG | 0.486922 | 2_3:+6168939 | Msa0274320:CDS |
CTTTGAAATGCGGCGGTGGA+TGG | 0.490657 | 2_3:-6168520 | None:intergenic |
GGAGTATGCGAGTTTGGTTG+TGG | 0.507228 | 2_3:+6168920 | Msa0274320:CDS |
TTCTACGTGTTGAAGCGACC+GGG | 0.513582 | 2_3:+6168831 | Msa0274320:CDS |
TAGGGATTCGTGTAGGAATG+TGG | 0.519949 | 2_3:+6168983 | Msa0274320:CDS |
AAATCAAATTTCTCCGGCGG+TGG | 0.522620 | 2_3:-6168771 | None:intergenic |
TCACAAGCATCATCAACAAA+AGG | 0.529060 | 2_3:-6169122 | None:intergenic |
AGCGTTGAAATATGAGGTGG+TGG | 0.529684 | 2_3:+6168878 | Msa0274320:CDS |
CGTGAGCTTTGGAAATTGAG+AGG | 0.530120 | 2_3:+6169146 | Msa0274320:CDS |
TTTCTACGTGTTGAAGCGAC+CGG | 0.530989 | 2_3:+6168830 | Msa0274320:CDS |
TGGTTGTGGACCGGTTGGAC+CGG | 0.534625 | 2_3:+6168934 | Msa0274320:CDS |
ATGCGAGTTTGGTTGTGGAC+CGG | 0.538407 | 2_3:+6168925 | Msa0274320:CDS |
TCAAAGCTTCTCACAAAACT+GGG | 0.544321 | 2_3:+6168537 | Msa0274320:CDS |
ACTACAAAATCAAATTTCTC+CGG | 0.568154 | 2_3:-6168777 | None:intergenic |
GGAACGGGTTTATTTCGCAT+CGG | 0.571199 | 2_3:+6168955 | Msa0274320:CDS |
GATTCGTGTAGGAATGTGGA+AGG | 0.572672 | 2_3:+6168987 | Msa0274320:CDS |
AAGACATTAACCGTCGTCGT+TGG | 0.574857 | 2_3:+6168442 | Msa0274320:CDS |
GAAGCTTTGAAATGCGGCGG+TGG | 0.579230 | 2_3:-6168524 | None:intergenic |
TTGTGAGAAGCTTTGAAATG+CGG | 0.588582 | 2_3:-6168530 | None:intergenic |
ATCGGTTCACCATCAATCAC+CGG | 0.589525 | 2_3:-6168804 | None:intergenic |
TCCAACAATTCATCAATCCC+CGG | 0.590132 | 2_3:-6168849 | None:intergenic |
TCTACGTGTTGAAGCGACCG+GGG | 0.598046 | 2_3:+6168832 | Msa0274320:CDS |
GATGGAAGAAAGAACGGCGG+AGG | 0.608748 | 2_3:-6168502 | None:intergenic |
TCCGATAAAGAACGTCGTCG+CGG | 0.612729 | 2_3:+6168476 | Msa0274320:CDS |
TTCAACACGTAGAAATCCAT+CGG | 0.617017 | 2_3:-6168822 | None:intergenic |
TCGTGTTCAGATCTGATCAA+AGG | 0.617362 | 2_3:+6169245 | Msa0274320:CDS |
GGTGATTGATGGTGAACCGA+TGG | 0.621208 | 2_3:+6168806 | Msa0274320:CDS |
GGCTTTATAGGGATTCGTGT+AGG | 0.622796 | 2_3:+6168976 | Msa0274320:CDS |
GCGGTGGATGGAAGAAAGAA+CGG | 0.625468 | 2_3:-6168508 | None:intergenic |
TTCCGATTAGATATTGAAGG+TGG | 0.632258 | 2_3:-6168699 | None:intergenic |
AGCGTTAGCGTTGAAATATG+AGG | 0.636943 | 2_3:+6168872 | Msa0274320:CDS |
GTTCACCATCAATCACCGGC+CGG | 0.662293 | 2_3:-6168800 | None:intergenic |
TGAGAAGCTTTGAAATGCGG+CGG | 0.672239 | 2_3:-6168527 | None:intergenic |
ACAAAATCAAATTTCTCCGG+CGG | 0.674025 | 2_3:-6168774 | None:intergenic |
ATTCGTGTAGGAATGTGGAA+GGG | 0.678685 | 2_3:+6168988 | Msa0274320:CDS |
GAGTTTGGTTGTGGACCGGT+TGG | 0.681067 | 2_3:+6168929 | Msa0274320:CDS |
GTTAGCGTTGAAATATGAGG+TGG | 0.719947 | 2_3:+6168875 | Msa0274320:CDS |
GTGGATGGAAGAAAGAACGG+CGG | 0.776465 | 2_3:-6168505 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCATCTAAATCAAGAAAAA+CGG | - | chr2_3:6168727-6168746 | None:intergenic | 20.0% |
!! | TTCATCTAAATCAAGAAAAA+CGG | - | chr2_3:6168727-6168746 | None:intergenic | 20.0% |
! | GTTAATGTCTTTGATTGATT+TGG | - | chr2_3:6168433-6168452 | None:intergenic | 25.0% |
! | TCTTGATTTAGATGAAACTT+TGG | + | chr2_3:6168731-6168750 | Msa0274320:CDS | 25.0% |
! | ACTACAAAATCAAATTTCTC+CGG | - | chr2_3:6168780-6168799 | None:intergenic | 25.0% |
!!! | AGAAATTTGATTTTGTAGTC+CGG | + | chr2_3:6168781-6168800 | Msa0274320:CDS | 25.0% |
!!! | TGATTGTTTTGATGATATGA+GGG | + | chr2_3:6169184-6169203 | Msa0274320:CDS | 25.0% |
! | GTTAATGTCTTTGATTGATT+TGG | - | chr2_3:6168433-6168452 | None:intergenic | 25.0% |
! | TCTTGATTTAGATGAAACTT+TGG | + | chr2_3:6168731-6168750 | Msa0274320:CDS | 25.0% |
! | ACTACAAAATCAAATTTCTC+CGG | - | chr2_3:6168780-6168799 | None:intergenic | 25.0% |
!!! | AGAAATTTGATTTTGTAGTC+CGG | + | chr2_3:6168781-6168800 | Msa0274320:CDS | 25.0% |
!!! | TGATTGTTTTGATGATATGA+GGG | + | chr2_3:6169184-6169203 | Msa0274320:CDS | 25.0% |
TTCCACCTTCAATATCTAAT+CGG | + | chr2_3:6168697-6168716 | Msa0274320:CDS | 30.0% | |
! | GTTTTCCGATTAGATATTGA+AGG | - | chr2_3:6168705-6168724 | None:intergenic | 30.0% |
TTAATCAAAATCGCATTCTC+AGG | - | chr2_3:6169101-6169120 | None:intergenic | 30.0% | |
!!! | AAATTGAGAGGCTTTTTTGA+TGG | + | chr2_3:6169158-6169177 | Msa0274320:CDS | 30.0% |
!!! | AATTGAGAGGCTTTTTTGAT+GGG | + | chr2_3:6169159-6169178 | Msa0274320:CDS | 30.0% |
!!! | GTGATTGTTTTGATGATATG+AGG | + | chr2_3:6169183-6169202 | Msa0274320:CDS | 30.0% |
TTCCACCTTCAATATCTAAT+CGG | + | chr2_3:6168697-6168716 | Msa0274320:CDS | 30.0% | |
! | GTTTTCCGATTAGATATTGA+AGG | - | chr2_3:6168705-6168724 | None:intergenic | 30.0% |
TTAATCAAAATCGCATTCTC+AGG | - | chr2_3:6169101-6169120 | None:intergenic | 30.0% | |
!!! | AAATTGAGAGGCTTTTTTGA+TGG | + | chr2_3:6169158-6169177 | Msa0274320:CDS | 30.0% |
!!! | AATTGAGAGGCTTTTTTGAT+GGG | + | chr2_3:6169159-6169178 | Msa0274320:CDS | 30.0% |
!!! | GTGATTGTTTTGATGATATG+AGG | + | chr2_3:6169183-6169202 | Msa0274320:CDS | 30.0% |
!! | TTGTGAGAAGCTTTGAAATG+CGG | - | chr2_3:6168533-6168552 | None:intergenic | 35.0% |
TTCAAAGCTTCTCACAAAAC+TGG | + | chr2_3:6168536-6168555 | Msa0274320:CDS | 35.0% | |
TCAAAGCTTCTCACAAAACT+GGG | + | chr2_3:6168537-6168556 | Msa0274320:CDS | 35.0% | |
! | AAAAAGCAGGGTTTTGCAAA+CGG | - | chr2_3:6168652-6168671 | None:intergenic | 35.0% |
TTCCGATTAGATATTGAAGG+TGG | - | chr2_3:6168702-6168721 | None:intergenic | 35.0% | |
ACAAAATCAAATTTCTCCGG+CGG | - | chr2_3:6168777-6168796 | None:intergenic | 35.0% | |
TTCAACACGTAGAAATCCAT+CGG | - | chr2_3:6168825-6168844 | None:intergenic | 35.0% | |
!! | ATATGAGGTGGTGGTTTTTA+CGG | + | chr2_3:6168887-6168906 | Msa0274320:CDS | 35.0% |
!! | TTATTTCGCATCGGCTTTAT+AGG | + | chr2_3:6168964-6168983 | Msa0274320:CDS | 35.0% |
!! | TATTTCGCATCGGCTTTATA+GGG | + | chr2_3:6168965-6168984 | Msa0274320:CDS | 35.0% |
!! | TGTGAAAGATTTGGGTTTTG+TGG | + | chr2_3:6169016-6169035 | Msa0274320:CDS | 35.0% |
!! | GTGAAAGATTTGGGTTTTGT+GGG | + | chr2_3:6169017-6169036 | Msa0274320:CDS | 35.0% |
TCACAAGCATCATCAACAAA+AGG | - | chr2_3:6169125-6169144 | None:intergenic | 35.0% | |
!! | TTGTGAGAAGCTTTGAAATG+CGG | - | chr2_3:6168533-6168552 | None:intergenic | 35.0% |
TTCAAAGCTTCTCACAAAAC+TGG | + | chr2_3:6168536-6168555 | Msa0274320:CDS | 35.0% | |
TCAAAGCTTCTCACAAAACT+GGG | + | chr2_3:6168537-6168556 | Msa0274320:CDS | 35.0% | |
! | AAAAAGCAGGGTTTTGCAAA+CGG | - | chr2_3:6168652-6168671 | None:intergenic | 35.0% |
TTCCGATTAGATATTGAAGG+TGG | - | chr2_3:6168702-6168721 | None:intergenic | 35.0% | |
ACAAAATCAAATTTCTCCGG+CGG | - | chr2_3:6168777-6168796 | None:intergenic | 35.0% | |
TTCAACACGTAGAAATCCAT+CGG | - | chr2_3:6168825-6168844 | None:intergenic | 35.0% | |
!! | ATATGAGGTGGTGGTTTTTA+CGG | + | chr2_3:6168887-6168906 | Msa0274320:CDS | 35.0% |
!! | TTATTTCGCATCGGCTTTAT+AGG | + | chr2_3:6168964-6168983 | Msa0274320:CDS | 35.0% |
!! | TATTTCGCATCGGCTTTATA+GGG | + | chr2_3:6168965-6168984 | Msa0274320:CDS | 35.0% |
!! | TGTGAAAGATTTGGGTTTTG+TGG | + | chr2_3:6169016-6169035 | Msa0274320:CDS | 35.0% |
!! | GTGAAAGATTTGGGTTTTGT+GGG | + | chr2_3:6169017-6169036 | Msa0274320:CDS | 35.0% |
TCACAAGCATCATCAACAAA+AGG | - | chr2_3:6169125-6169144 | None:intergenic | 35.0% | |
CTCGTCTCAGTTCTTCAAAT+CGG | + | chr2_3:6168565-6168584 | Msa0274320:CDS | 40.0% | |
GACGCTATCTTCAAAAAGCA+GGG | - | chr2_3:6168664-6168683 | None:intergenic | 40.0% | |
!! | ATTTGATTTTGTAGTCCGGC+CGG | + | chr2_3:6168785-6168804 | Msa0274320:CDS | 40.0% |
TCCAACAATTCATCAATCCC+CGG | - | chr2_3:6168852-6168871 | None:intergenic | 40.0% | |
! | AGCGTTAGCGTTGAAATATG+AGG | + | chr2_3:6168872-6168891 | Msa0274320:CDS | 40.0% |
! | GTTAGCGTTGAAATATGAGG+TGG | + | chr2_3:6168875-6168894 | Msa0274320:CDS | 40.0% |
ATTCGTGTAGGAATGTGGAA+GGG | + | chr2_3:6168988-6169007 | Msa0274320:CDS | 40.0% | |
AGGGAAGCTTGTGAAAGATT+TGG | + | chr2_3:6169007-6169026 | Msa0274320:CDS | 40.0% | |
GGGAAGCTTGTGAAAGATTT+GGG | + | chr2_3:6169008-6169027 | Msa0274320:CDS | 40.0% | |
!! | AAGATTTGGGTTTTGTGGGA+AGG | + | chr2_3:6169021-6169040 | Msa0274320:CDS | 40.0% |
!! | AGATTTGGGTTTTGTGGGAA+GGG | + | chr2_3:6169022-6169041 | Msa0274320:CDS | 40.0% |
!! | GGTTGATTCGAAAACGAAAC+TGG | - | chr2_3:6169080-6169099 | None:intergenic | 40.0% |
TCGTGTTCAGATCTGATCAA+AGG | + | chr2_3:6169245-6169264 | Msa0274320:CDS | 40.0% | |
CTCGTCTCAGTTCTTCAAAT+CGG | + | chr2_3:6168565-6168584 | Msa0274320:CDS | 40.0% | |
GACGCTATCTTCAAAAAGCA+GGG | - | chr2_3:6168664-6168683 | None:intergenic | 40.0% | |
!! | ATTTGATTTTGTAGTCCGGC+CGG | + | chr2_3:6168785-6168804 | Msa0274320:CDS | 40.0% |
TCCAACAATTCATCAATCCC+CGG | - | chr2_3:6168852-6168871 | None:intergenic | 40.0% | |
! | AGCGTTAGCGTTGAAATATG+AGG | + | chr2_3:6168872-6168891 | Msa0274320:CDS | 40.0% |
! | GTTAGCGTTGAAATATGAGG+TGG | + | chr2_3:6168875-6168894 | Msa0274320:CDS | 40.0% |
ATTCGTGTAGGAATGTGGAA+GGG | + | chr2_3:6168988-6169007 | Msa0274320:CDS | 40.0% | |
AGGGAAGCTTGTGAAAGATT+TGG | + | chr2_3:6169007-6169026 | Msa0274320:CDS | 40.0% | |
GGGAAGCTTGTGAAAGATTT+GGG | + | chr2_3:6169008-6169027 | Msa0274320:CDS | 40.0% | |
!! | AAGATTTGGGTTTTGTGGGA+AGG | + | chr2_3:6169021-6169040 | Msa0274320:CDS | 40.0% |
!! | AGATTTGGGTTTTGTGGGAA+GGG | + | chr2_3:6169022-6169041 | Msa0274320:CDS | 40.0% |
!! | GGTTGATTCGAAAACGAAAC+TGG | - | chr2_3:6169080-6169099 | None:intergenic | 40.0% |
TCGTGTTCAGATCTGATCAA+AGG | + | chr2_3:6169245-6169264 | Msa0274320:CDS | 40.0% | |
AAGACATTAACCGTCGTCGT+TGG | + | chr2_3:6168442-6168461 | Msa0274320:CDS | 45.0% | |
!! | TGAGAAGCTTTGAAATGCGG+CGG | - | chr2_3:6168530-6168549 | None:intergenic | 45.0% |
CGACGCTATCTTCAAAAAGC+AGG | - | chr2_3:6168665-6168684 | None:intergenic | 45.0% | |
TTCAAAAACTTCACCACCGC+CGG | + | chr2_3:6168758-6168777 | Msa0274320:CDS | 45.0% | |
AAATCAAATTTCTCCGGCGG+TGG | - | chr2_3:6168774-6168793 | None:intergenic | 45.0% | |
! | ATCGGTTCACCATCAATCAC+CGG | - | chr2_3:6168807-6168826 | None:intergenic | 45.0% |
TTTCTACGTGTTGAAGCGAC+CGG | + | chr2_3:6168830-6168849 | Msa0274320:CDS | 45.0% | |
ACCGGGGATTGATGAATTGT+TGG | + | chr2_3:6168848-6168867 | Msa0274320:CDS | 45.0% | |
! | AGCGTTGAAATATGAGGTGG+TGG | + | chr2_3:6168878-6168897 | Msa0274320:CDS | 45.0% |
! | GCTTAAGGAGTATGCGAGTT+TGG | + | chr2_3:6168914-6168933 | Msa0274320:CDS | 45.0% |
GATGCGAAATAAACCCGTTC+CGG | - | chr2_3:6168956-6168975 | None:intergenic | 45.0% | |
! | GGAACGGGTTTATTTCGCAT+CGG | + | chr2_3:6168955-6168974 | Msa0274320:CDS | 45.0% |
! | GGCTTTATAGGGATTCGTGT+AGG | + | chr2_3:6168976-6168995 | Msa0274320:CDS | 45.0% |
TAGGGATTCGTGTAGGAATG+TGG | + | chr2_3:6168983-6169002 | Msa0274320:CDS | 45.0% | |
GATTCGTGTAGGAATGTGGA+AGG | + | chr2_3:6168987-6169006 | Msa0274320:CDS | 45.0% | |
TGTGGGAAGGGATTTGAAGA+AGG | + | chr2_3:6169034-6169053 | Msa0274320:CDS | 45.0% | |
ATGCTTGTGATCGTGAGCTT+TGG | + | chr2_3:6169135-6169154 | Msa0274320:CDS | 45.0% | |
!! | CGTGAGCTTTGGAAATTGAG+AGG | + | chr2_3:6169146-6169165 | Msa0274320:CDS | 45.0% |
AAGACATTAACCGTCGTCGT+TGG | + | chr2_3:6168442-6168461 | Msa0274320:CDS | 45.0% | |
!! | TGAGAAGCTTTGAAATGCGG+CGG | - | chr2_3:6168530-6168549 | None:intergenic | 45.0% |
CGACGCTATCTTCAAAAAGC+AGG | - | chr2_3:6168665-6168684 | None:intergenic | 45.0% | |
TTCAAAAACTTCACCACCGC+CGG | + | chr2_3:6168758-6168777 | Msa0274320:CDS | 45.0% | |
AAATCAAATTTCTCCGGCGG+TGG | - | chr2_3:6168774-6168793 | None:intergenic | 45.0% | |
! | ATCGGTTCACCATCAATCAC+CGG | - | chr2_3:6168807-6168826 | None:intergenic | 45.0% |
TTTCTACGTGTTGAAGCGAC+CGG | + | chr2_3:6168830-6168849 | Msa0274320:CDS | 45.0% | |
ACCGGGGATTGATGAATTGT+TGG | + | chr2_3:6168848-6168867 | Msa0274320:CDS | 45.0% | |
! | AGCGTTGAAATATGAGGTGG+TGG | + | chr2_3:6168878-6168897 | Msa0274320:CDS | 45.0% |
! | GCTTAAGGAGTATGCGAGTT+TGG | + | chr2_3:6168914-6168933 | Msa0274320:CDS | 45.0% |
GATGCGAAATAAACCCGTTC+CGG | - | chr2_3:6168956-6168975 | None:intergenic | 45.0% | |
! | GGAACGGGTTTATTTCGCAT+CGG | + | chr2_3:6168955-6168974 | Msa0274320:CDS | 45.0% |
! | GGCTTTATAGGGATTCGTGT+AGG | + | chr2_3:6168976-6168995 | Msa0274320:CDS | 45.0% |
TAGGGATTCGTGTAGGAATG+TGG | + | chr2_3:6168983-6169002 | Msa0274320:CDS | 45.0% | |
GATTCGTGTAGGAATGTGGA+AGG | + | chr2_3:6168987-6169006 | Msa0274320:CDS | 45.0% | |
TGTGGGAAGGGATTTGAAGA+AGG | + | chr2_3:6169034-6169053 | Msa0274320:CDS | 45.0% | |
ATGCTTGTGATCGTGAGCTT+TGG | + | chr2_3:6169135-6169154 | Msa0274320:CDS | 45.0% | |
!! | CGTGAGCTTTGGAAATTGAG+AGG | + | chr2_3:6169146-6169165 | Msa0274320:CDS | 45.0% |
!! | TTTTTCGACGCCAACGACGA+CGG | - | chr2_3:6168455-6168474 | None:intergenic | 50.0% |
TCCGATAAAGAACGTCGTCG+CGG | + | chr2_3:6168476-6168495 | Msa0274320:CDS | 50.0% | |
GTGGATGGAAGAAAGAACGG+CGG | - | chr2_3:6168508-6168527 | None:intergenic | 50.0% | |
GCGGTGGATGGAAGAAAGAA+CGG | - | chr2_3:6168511-6168530 | None:intergenic | 50.0% | |
!! | GGTGATTGATGGTGAACCGA+TGG | + | chr2_3:6168806-6168825 | Msa0274320:CDS | 50.0% |
TTCTACGTGTTGAAGCGACC+GGG | + | chr2_3:6168831-6168850 | Msa0274320:CDS | 50.0% | |
!! | TGAGGTGGTGGTTTTTACGG+CGG | + | chr2_3:6168890-6168909 | Msa0274320:CDS | 50.0% |
GGAGTATGCGAGTTTGGTTG+TGG | + | chr2_3:6168920-6168939 | Msa0274320:CDS | 50.0% | |
ATGCGAGTTTGGTTGTGGAC+CGG | + | chr2_3:6168925-6168944 | Msa0274320:CDS | 50.0% | |
! | GATCTGATCAAAGGCGTGTC+TGG | + | chr2_3:6169254-6169273 | Msa0274320:CDS | 50.0% |
!! | TTTTTCGACGCCAACGACGA+CGG | - | chr2_3:6168455-6168474 | None:intergenic | 50.0% |
TCCGATAAAGAACGTCGTCG+CGG | + | chr2_3:6168476-6168495 | Msa0274320:CDS | 50.0% | |
GTGGATGGAAGAAAGAACGG+CGG | - | chr2_3:6168508-6168527 | None:intergenic | 50.0% | |
GCGGTGGATGGAAGAAAGAA+CGG | - | chr2_3:6168511-6168530 | None:intergenic | 50.0% | |
!! | GGTGATTGATGGTGAACCGA+TGG | + | chr2_3:6168806-6168825 | Msa0274320:CDS | 50.0% |
TTCTACGTGTTGAAGCGACC+GGG | + | chr2_3:6168831-6168850 | Msa0274320:CDS | 50.0% | |
!! | TGAGGTGGTGGTTTTTACGG+CGG | + | chr2_3:6168890-6168909 | Msa0274320:CDS | 50.0% |
GGAGTATGCGAGTTTGGTTG+TGG | + | chr2_3:6168920-6168939 | Msa0274320:CDS | 50.0% | |
ATGCGAGTTTGGTTGTGGAC+CGG | + | chr2_3:6168925-6168944 | Msa0274320:CDS | 50.0% | |
! | GATCTGATCAAAGGCGTGTC+TGG | + | chr2_3:6169254-6169273 | Msa0274320:CDS | 50.0% |
GCCGCGACGACGTTCTTTAT+CGG | - | chr2_3:6168480-6168499 | None:intergenic | 55.0% | |
GATGGAAGAAAGAACGGCGG+AGG | - | chr2_3:6168505-6168524 | None:intergenic | 55.0% | |
!! | CTTTGAAATGCGGCGGTGGA+TGG | - | chr2_3:6168523-6168542 | None:intergenic | 55.0% |
!! | GAAGCTTTGAAATGCGGCGG+TGG | - | chr2_3:6168527-6168546 | None:intergenic | 55.0% |
GTTCACCATCAATCACCGGC+CGG | - | chr2_3:6168803-6168822 | None:intergenic | 55.0% | |
TCTACGTGTTGAAGCGACCG+GGG | + | chr2_3:6168832-6168851 | Msa0274320:CDS | 55.0% | |
! | GGTTTTTACGGCGGCGCTTA+AGG | + | chr2_3:6168899-6168918 | Msa0274320:CDS | 55.0% |
GAGTTTGGTTGTGGACCGGT+TGG | + | chr2_3:6168929-6168948 | Msa0274320:CDS | 55.0% | |
TAAACCCGTTCCGGTCCAAC+CGG | - | chr2_3:6168947-6168966 | None:intergenic | 55.0% | |
GCCGCGACGACGTTCTTTAT+CGG | - | chr2_3:6168480-6168499 | None:intergenic | 55.0% | |
GATGGAAGAAAGAACGGCGG+AGG | - | chr2_3:6168505-6168524 | None:intergenic | 55.0% | |
!! | CTTTGAAATGCGGCGGTGGA+TGG | - | chr2_3:6168523-6168542 | None:intergenic | 55.0% |
!! | GAAGCTTTGAAATGCGGCGG+TGG | - | chr2_3:6168527-6168546 | None:intergenic | 55.0% |
GTTCACCATCAATCACCGGC+CGG | - | chr2_3:6168803-6168822 | None:intergenic | 55.0% | |
TCTACGTGTTGAAGCGACCG+GGG | + | chr2_3:6168832-6168851 | Msa0274320:CDS | 55.0% | |
! | GGTTTTTACGGCGGCGCTTA+AGG | + | chr2_3:6168899-6168918 | Msa0274320:CDS | 55.0% |
GAGTTTGGTTGTGGACCGGT+TGG | + | chr2_3:6168929-6168948 | Msa0274320:CDS | 55.0% | |
TAAACCCGTTCCGGTCCAAC+CGG | - | chr2_3:6168947-6168966 | None:intergenic | 55.0% | |
GTAGTCCGGCCGGTGATTGA+TGG | + | chr2_3:6168795-6168814 | Msa0274320:CDS | 60.0% | |
TGGTTGTGGACCGGTTGGAC+CGG | + | chr2_3:6168934-6168953 | Msa0274320:CDS | 60.0% | |
GTAGTCCGGCCGGTGATTGA+TGG | + | chr2_3:6168795-6168814 | Msa0274320:CDS | 60.0% | |
TGGTTGTGGACCGGTTGGAC+CGG | + | chr2_3:6168934-6168953 | Msa0274320:CDS | 60.0% | |
GTGGACCGGTTGGACCGGAA+CGG | + | chr2_3:6168939-6168958 | Msa0274320:CDS | 65.0% | |
TGGACCGGTTGGACCGGAAC+GGG | + | chr2_3:6168940-6168959 | Msa0274320:CDS | 65.0% | |
GTGGACCGGTTGGACCGGAA+CGG | + | chr2_3:6168939-6168958 | Msa0274320:CDS | 65.0% | |
TGGACCGGTTGGACCGGAAC+GGG | + | chr2_3:6168940-6168959 | Msa0274320:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 6168399 | 6169283 | 6168399 | ID=Msa0274320;Name=Msa0274320 |
chr2_3 | mRNA | 6168399 | 6169283 | 6168399 | ID=Msa0274320-mRNA-1;Parent=Msa0274320;Name=Msa0274320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|294 |
chr2_3 | exon | 6168399 | 6169283 | 6168399 | ID=Msa0274320-mRNA-1:exon:2855;Parent=Msa0274320-mRNA-1 |
chr2_3 | CDS | 6168399 | 6169283 | 6168399 | ID=Msa0274320-mRNA-1:cds;Parent=Msa0274320-mRNA-1 |
Gene Sequence |
Protein sequence |