AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274320 MtrunA17_Chr2g0284551 97.619 294 7 0 1 294 1 294 0.0 585
Msa0274320 MtrunA17_Chr5g0419741 37.714 175 103 2 101 274 123 292 1.49e-28 111
Msa0274320 MtrunA17_Chr3g0078241 41.143 175 99 3 98 269 284 457 1.16e-26 108
Msa0274320 MtrunA17_Chr2g0303951 36.325 234 138 5 54 280 240 469 4.79e-26 107
Msa0274320 MtrunA17_Chr3g0122541 40.972 144 83 2 109 251 280 422 1.21e-25 105
Msa0274320 MtrunA17_Chr3g0122521 37.086 151 93 2 102 251 12 161 1.09e-22 93.2
Msa0274320 MtrunA17_Chr3g0113611 38.217 157 78 4 106 243 70 226 2.91e-20 88.2
Msa0274320 MtrunA17_Chr5g0437111 37.580 157 79 4 106 243 96 252 5.08e-17 79.7
Msa0274320 MtrunA17_Chr5g0446321 31.210 157 89 2 91 244 172 312 8.08e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274320 AT5G45700.1 43.463 283 146 6 1 280 1 272 1.96e-62 199
Msa0274320 AT1G29780.1 56.886 167 71 1 107 272 49 215 6.82e-59 188
Msa0274320 AT1G29770.1 52.571 175 81 2 107 279 102 276 4.39e-57 185
Msa0274320 AT5G11860.3 37.576 165 101 2 109 272 113 276 2.63e-27 108
Msa0274320 AT5G11860.5 37.576 165 101 2 109 272 113 276 2.63e-27 108
Msa0274320 AT5G11860.1 37.576 165 101 2 109 272 113 276 2.63e-27 108
Msa0274320 AT5G11860.4 37.576 165 101 2 109 272 113 276 2.63e-27 108
Msa0274320 AT5G11860.2 37.576 165 101 2 109 272 113 276 2.63e-27 108
Msa0274320 AT5G46410.2 39.884 173 102 2 109 280 285 456 3.49e-25 104
Msa0274320 AT5G46410.3 39.884 173 102 2 109 280 282 453 3.83e-25 104
Msa0274320 AT5G46410.1 39.884 173 102 2 109 280 282 453 3.83e-25 104
Msa0274320 AT4G18140.4 39.884 173 102 2 109 280 270 441 1.44e-23 100
Msa0274320 AT4G18140.6 39.884 173 102 2 109 280 270 441 1.44e-23 100
Msa0274320 AT4G18140.5 39.884 173 102 2 109 280 270 441 1.44e-23 100
Msa0274320 AT4G18140.1 40.606 165 96 2 109 272 270 433 4.13e-23 99.0
Msa0274320 AT4G18140.2 40.606 165 96 2 109 272 270 433 4.13e-23 99.0
Msa0274320 AT4G18140.3 40.606 165 96 2 109 272 270 433 5.88e-23 98.2
Msa0274320 AT1G55900.2 31.792 173 99 2 91 260 171 327 4.60e-19 86.7
Msa0274320 AT1G55900.1 31.792 173 99 2 91 260 171 327 4.64e-19 86.7
Msa0274320 AT3G55960.1 36.184 152 78 4 106 238 96 247 2.38e-16 78.2

Find 59 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAAGCTTCTCACAAAAC+TGG 0.265788 2_3:+6168536 Msa0274320:CDS
AGGGAAGCTTGTGAAAGATT+TGG 0.293676 2_3:+6169007 Msa0274320:CDS
TTATTTCGCATCGGCTTTAT+AGG 0.299291 2_3:+6168964 Msa0274320:CDS
GGGAAGCTTGTGAAAGATTT+GGG 0.307134 2_3:+6169008 Msa0274320:CDS
GCTTAAGGAGTATGCGAGTT+TGG 0.339130 2_3:+6168914 Msa0274320:CDS
GGTTGATTCGAAAACGAAAC+TGG 0.341731 2_3:-6169077 None:intergenic
GTTAATGTCTTTGATTGATT+TGG 0.348380 2_3:-6168430 None:intergenic
TTCCACCTTCAATATCTAAT+CGG 0.378188 2_3:+6168697 Msa0274320:CDS
TATTTCGCATCGGCTTTATA+GGG 0.378274 2_3:+6168965 Msa0274320:CDS
GCCGCGACGACGTTCTTTAT+CGG 0.415564 2_3:-6168477 None:intergenic
TGGACCGGTTGGACCGGAAC+GGG 0.415871 2_3:+6168940 Msa0274320:CDS
ATGCTTGTGATCGTGAGCTT+TGG 0.419497 2_3:+6169135 Msa0274320:CDS
TTAATCAAAATCGCATTCTC+AGG 0.423966 2_3:-6169098 None:intergenic
GTAGTCCGGCCGGTGATTGA+TGG 0.425963 2_3:+6168795 Msa0274320:CDS
CTCGTCTCAGTTCTTCAAAT+CGG 0.429741 2_3:+6168565 Msa0274320:CDS
GATCTGATCAAAGGCGTGTC+TGG 0.434592 2_3:+6169254 Msa0274320:CDS
TCTTGATTTAGATGAAACTT+TGG 0.436405 2_3:+6168731 Msa0274320:CDS
TGTGGGAAGGGATTTGAAGA+AGG 0.467439 2_3:+6169034 Msa0274320:CDS
TAAACCCGTTCCGGTCCAAC+CGG 0.468555 2_3:-6168944 None:intergenic
GATGCGAAATAAACCCGTTC+CGG 0.471268 2_3:-6168953 None:intergenic
ACCGGGGATTGATGAATTGT+TGG 0.482144 2_3:+6168848 Msa0274320:CDS
GTGGACCGGTTGGACCGGAA+CGG 0.486922 2_3:+6168939 Msa0274320:CDS
CTTTGAAATGCGGCGGTGGA+TGG 0.490657 2_3:-6168520 None:intergenic
GGAGTATGCGAGTTTGGTTG+TGG 0.507228 2_3:+6168920 Msa0274320:CDS
TTCTACGTGTTGAAGCGACC+GGG 0.513582 2_3:+6168831 Msa0274320:CDS
TAGGGATTCGTGTAGGAATG+TGG 0.519949 2_3:+6168983 Msa0274320:CDS
AAATCAAATTTCTCCGGCGG+TGG 0.522620 2_3:-6168771 None:intergenic
TCACAAGCATCATCAACAAA+AGG 0.529060 2_3:-6169122 None:intergenic
AGCGTTGAAATATGAGGTGG+TGG 0.529684 2_3:+6168878 Msa0274320:CDS
CGTGAGCTTTGGAAATTGAG+AGG 0.530120 2_3:+6169146 Msa0274320:CDS
TTTCTACGTGTTGAAGCGAC+CGG 0.530989 2_3:+6168830 Msa0274320:CDS
TGGTTGTGGACCGGTTGGAC+CGG 0.534625 2_3:+6168934 Msa0274320:CDS
ATGCGAGTTTGGTTGTGGAC+CGG 0.538407 2_3:+6168925 Msa0274320:CDS
TCAAAGCTTCTCACAAAACT+GGG 0.544321 2_3:+6168537 Msa0274320:CDS
ACTACAAAATCAAATTTCTC+CGG 0.568154 2_3:-6168777 None:intergenic
GGAACGGGTTTATTTCGCAT+CGG 0.571199 2_3:+6168955 Msa0274320:CDS
GATTCGTGTAGGAATGTGGA+AGG 0.572672 2_3:+6168987 Msa0274320:CDS
AAGACATTAACCGTCGTCGT+TGG 0.574857 2_3:+6168442 Msa0274320:CDS
GAAGCTTTGAAATGCGGCGG+TGG 0.579230 2_3:-6168524 None:intergenic
TTGTGAGAAGCTTTGAAATG+CGG 0.588582 2_3:-6168530 None:intergenic
ATCGGTTCACCATCAATCAC+CGG 0.589525 2_3:-6168804 None:intergenic
TCCAACAATTCATCAATCCC+CGG 0.590132 2_3:-6168849 None:intergenic
TCTACGTGTTGAAGCGACCG+GGG 0.598046 2_3:+6168832 Msa0274320:CDS
GATGGAAGAAAGAACGGCGG+AGG 0.608748 2_3:-6168502 None:intergenic
TCCGATAAAGAACGTCGTCG+CGG 0.612729 2_3:+6168476 Msa0274320:CDS
TTCAACACGTAGAAATCCAT+CGG 0.617017 2_3:-6168822 None:intergenic
TCGTGTTCAGATCTGATCAA+AGG 0.617362 2_3:+6169245 Msa0274320:CDS
GGTGATTGATGGTGAACCGA+TGG 0.621208 2_3:+6168806 Msa0274320:CDS
GGCTTTATAGGGATTCGTGT+AGG 0.622796 2_3:+6168976 Msa0274320:CDS
GCGGTGGATGGAAGAAAGAA+CGG 0.625468 2_3:-6168508 None:intergenic
TTCCGATTAGATATTGAAGG+TGG 0.632258 2_3:-6168699 None:intergenic
AGCGTTAGCGTTGAAATATG+AGG 0.636943 2_3:+6168872 Msa0274320:CDS
GTTCACCATCAATCACCGGC+CGG 0.662293 2_3:-6168800 None:intergenic
TGAGAAGCTTTGAAATGCGG+CGG 0.672239 2_3:-6168527 None:intergenic
ACAAAATCAAATTTCTCCGG+CGG 0.674025 2_3:-6168774 None:intergenic
ATTCGTGTAGGAATGTGGAA+GGG 0.678685 2_3:+6168988 Msa0274320:CDS
GAGTTTGGTTGTGGACCGGT+TGG 0.681067 2_3:+6168929 Msa0274320:CDS
GTTAGCGTTGAAATATGAGG+TGG 0.719947 2_3:+6168875 Msa0274320:CDS
GTGGATGGAAGAAAGAACGG+CGG 0.776465 2_3:-6168505 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATCTAAATCAAGAAAAA+CGG - chr2_3:6168727-6168746 None:intergenic 20.0%
!! TTCATCTAAATCAAGAAAAA+CGG - chr2_3:6168727-6168746 None:intergenic 20.0%
! GTTAATGTCTTTGATTGATT+TGG - chr2_3:6168433-6168452 None:intergenic 25.0%
! TCTTGATTTAGATGAAACTT+TGG + chr2_3:6168731-6168750 Msa0274320:CDS 25.0%
! ACTACAAAATCAAATTTCTC+CGG - chr2_3:6168780-6168799 None:intergenic 25.0%
!!! AGAAATTTGATTTTGTAGTC+CGG + chr2_3:6168781-6168800 Msa0274320:CDS 25.0%
!!! TGATTGTTTTGATGATATGA+GGG + chr2_3:6169184-6169203 Msa0274320:CDS 25.0%
! GTTAATGTCTTTGATTGATT+TGG - chr2_3:6168433-6168452 None:intergenic 25.0%
! TCTTGATTTAGATGAAACTT+TGG + chr2_3:6168731-6168750 Msa0274320:CDS 25.0%
! ACTACAAAATCAAATTTCTC+CGG - chr2_3:6168780-6168799 None:intergenic 25.0%
!!! AGAAATTTGATTTTGTAGTC+CGG + chr2_3:6168781-6168800 Msa0274320:CDS 25.0%
!!! TGATTGTTTTGATGATATGA+GGG + chr2_3:6169184-6169203 Msa0274320:CDS 25.0%
TTCCACCTTCAATATCTAAT+CGG + chr2_3:6168697-6168716 Msa0274320:CDS 30.0%
! GTTTTCCGATTAGATATTGA+AGG - chr2_3:6168705-6168724 None:intergenic 30.0%
TTAATCAAAATCGCATTCTC+AGG - chr2_3:6169101-6169120 None:intergenic 30.0%
!!! AAATTGAGAGGCTTTTTTGA+TGG + chr2_3:6169158-6169177 Msa0274320:CDS 30.0%
!!! AATTGAGAGGCTTTTTTGAT+GGG + chr2_3:6169159-6169178 Msa0274320:CDS 30.0%
!!! GTGATTGTTTTGATGATATG+AGG + chr2_3:6169183-6169202 Msa0274320:CDS 30.0%
TTCCACCTTCAATATCTAAT+CGG + chr2_3:6168697-6168716 Msa0274320:CDS 30.0%
! GTTTTCCGATTAGATATTGA+AGG - chr2_3:6168705-6168724 None:intergenic 30.0%
TTAATCAAAATCGCATTCTC+AGG - chr2_3:6169101-6169120 None:intergenic 30.0%
!!! AAATTGAGAGGCTTTTTTGA+TGG + chr2_3:6169158-6169177 Msa0274320:CDS 30.0%
!!! AATTGAGAGGCTTTTTTGAT+GGG + chr2_3:6169159-6169178 Msa0274320:CDS 30.0%
!!! GTGATTGTTTTGATGATATG+AGG + chr2_3:6169183-6169202 Msa0274320:CDS 30.0%
!! TTGTGAGAAGCTTTGAAATG+CGG - chr2_3:6168533-6168552 None:intergenic 35.0%
TTCAAAGCTTCTCACAAAAC+TGG + chr2_3:6168536-6168555 Msa0274320:CDS 35.0%
TCAAAGCTTCTCACAAAACT+GGG + chr2_3:6168537-6168556 Msa0274320:CDS 35.0%
! AAAAAGCAGGGTTTTGCAAA+CGG - chr2_3:6168652-6168671 None:intergenic 35.0%
TTCCGATTAGATATTGAAGG+TGG - chr2_3:6168702-6168721 None:intergenic 35.0%
ACAAAATCAAATTTCTCCGG+CGG - chr2_3:6168777-6168796 None:intergenic 35.0%
TTCAACACGTAGAAATCCAT+CGG - chr2_3:6168825-6168844 None:intergenic 35.0%
!! ATATGAGGTGGTGGTTTTTA+CGG + chr2_3:6168887-6168906 Msa0274320:CDS 35.0%
!! TTATTTCGCATCGGCTTTAT+AGG + chr2_3:6168964-6168983 Msa0274320:CDS 35.0%
!! TATTTCGCATCGGCTTTATA+GGG + chr2_3:6168965-6168984 Msa0274320:CDS 35.0%
!! TGTGAAAGATTTGGGTTTTG+TGG + chr2_3:6169016-6169035 Msa0274320:CDS 35.0%
!! GTGAAAGATTTGGGTTTTGT+GGG + chr2_3:6169017-6169036 Msa0274320:CDS 35.0%
TCACAAGCATCATCAACAAA+AGG - chr2_3:6169125-6169144 None:intergenic 35.0%
!! TTGTGAGAAGCTTTGAAATG+CGG - chr2_3:6168533-6168552 None:intergenic 35.0%
TTCAAAGCTTCTCACAAAAC+TGG + chr2_3:6168536-6168555 Msa0274320:CDS 35.0%
TCAAAGCTTCTCACAAAACT+GGG + chr2_3:6168537-6168556 Msa0274320:CDS 35.0%
! AAAAAGCAGGGTTTTGCAAA+CGG - chr2_3:6168652-6168671 None:intergenic 35.0%
TTCCGATTAGATATTGAAGG+TGG - chr2_3:6168702-6168721 None:intergenic 35.0%
ACAAAATCAAATTTCTCCGG+CGG - chr2_3:6168777-6168796 None:intergenic 35.0%
TTCAACACGTAGAAATCCAT+CGG - chr2_3:6168825-6168844 None:intergenic 35.0%
!! ATATGAGGTGGTGGTTTTTA+CGG + chr2_3:6168887-6168906 Msa0274320:CDS 35.0%
!! TTATTTCGCATCGGCTTTAT+AGG + chr2_3:6168964-6168983 Msa0274320:CDS 35.0%
!! TATTTCGCATCGGCTTTATA+GGG + chr2_3:6168965-6168984 Msa0274320:CDS 35.0%
!! TGTGAAAGATTTGGGTTTTG+TGG + chr2_3:6169016-6169035 Msa0274320:CDS 35.0%
!! GTGAAAGATTTGGGTTTTGT+GGG + chr2_3:6169017-6169036 Msa0274320:CDS 35.0%
TCACAAGCATCATCAACAAA+AGG - chr2_3:6169125-6169144 None:intergenic 35.0%
CTCGTCTCAGTTCTTCAAAT+CGG + chr2_3:6168565-6168584 Msa0274320:CDS 40.0%
GACGCTATCTTCAAAAAGCA+GGG - chr2_3:6168664-6168683 None:intergenic 40.0%
!! ATTTGATTTTGTAGTCCGGC+CGG + chr2_3:6168785-6168804 Msa0274320:CDS 40.0%
TCCAACAATTCATCAATCCC+CGG - chr2_3:6168852-6168871 None:intergenic 40.0%
! AGCGTTAGCGTTGAAATATG+AGG + chr2_3:6168872-6168891 Msa0274320:CDS 40.0%
! GTTAGCGTTGAAATATGAGG+TGG + chr2_3:6168875-6168894 Msa0274320:CDS 40.0%
ATTCGTGTAGGAATGTGGAA+GGG + chr2_3:6168988-6169007 Msa0274320:CDS 40.0%
AGGGAAGCTTGTGAAAGATT+TGG + chr2_3:6169007-6169026 Msa0274320:CDS 40.0%
GGGAAGCTTGTGAAAGATTT+GGG + chr2_3:6169008-6169027 Msa0274320:CDS 40.0%
!! AAGATTTGGGTTTTGTGGGA+AGG + chr2_3:6169021-6169040 Msa0274320:CDS 40.0%
!! AGATTTGGGTTTTGTGGGAA+GGG + chr2_3:6169022-6169041 Msa0274320:CDS 40.0%
!! GGTTGATTCGAAAACGAAAC+TGG - chr2_3:6169080-6169099 None:intergenic 40.0%
TCGTGTTCAGATCTGATCAA+AGG + chr2_3:6169245-6169264 Msa0274320:CDS 40.0%
CTCGTCTCAGTTCTTCAAAT+CGG + chr2_3:6168565-6168584 Msa0274320:CDS 40.0%
GACGCTATCTTCAAAAAGCA+GGG - chr2_3:6168664-6168683 None:intergenic 40.0%
!! ATTTGATTTTGTAGTCCGGC+CGG + chr2_3:6168785-6168804 Msa0274320:CDS 40.0%
TCCAACAATTCATCAATCCC+CGG - chr2_3:6168852-6168871 None:intergenic 40.0%
! AGCGTTAGCGTTGAAATATG+AGG + chr2_3:6168872-6168891 Msa0274320:CDS 40.0%
! GTTAGCGTTGAAATATGAGG+TGG + chr2_3:6168875-6168894 Msa0274320:CDS 40.0%
ATTCGTGTAGGAATGTGGAA+GGG + chr2_3:6168988-6169007 Msa0274320:CDS 40.0%
AGGGAAGCTTGTGAAAGATT+TGG + chr2_3:6169007-6169026 Msa0274320:CDS 40.0%
GGGAAGCTTGTGAAAGATTT+GGG + chr2_3:6169008-6169027 Msa0274320:CDS 40.0%
!! AAGATTTGGGTTTTGTGGGA+AGG + chr2_3:6169021-6169040 Msa0274320:CDS 40.0%
!! AGATTTGGGTTTTGTGGGAA+GGG + chr2_3:6169022-6169041 Msa0274320:CDS 40.0%
!! GGTTGATTCGAAAACGAAAC+TGG - chr2_3:6169080-6169099 None:intergenic 40.0%
TCGTGTTCAGATCTGATCAA+AGG + chr2_3:6169245-6169264 Msa0274320:CDS 40.0%
AAGACATTAACCGTCGTCGT+TGG + chr2_3:6168442-6168461 Msa0274320:CDS 45.0%
!! TGAGAAGCTTTGAAATGCGG+CGG - chr2_3:6168530-6168549 None:intergenic 45.0%
CGACGCTATCTTCAAAAAGC+AGG - chr2_3:6168665-6168684 None:intergenic 45.0%
TTCAAAAACTTCACCACCGC+CGG + chr2_3:6168758-6168777 Msa0274320:CDS 45.0%
AAATCAAATTTCTCCGGCGG+TGG - chr2_3:6168774-6168793 None:intergenic 45.0%
! ATCGGTTCACCATCAATCAC+CGG - chr2_3:6168807-6168826 None:intergenic 45.0%
TTTCTACGTGTTGAAGCGAC+CGG + chr2_3:6168830-6168849 Msa0274320:CDS 45.0%
ACCGGGGATTGATGAATTGT+TGG + chr2_3:6168848-6168867 Msa0274320:CDS 45.0%
! AGCGTTGAAATATGAGGTGG+TGG + chr2_3:6168878-6168897 Msa0274320:CDS 45.0%
! GCTTAAGGAGTATGCGAGTT+TGG + chr2_3:6168914-6168933 Msa0274320:CDS 45.0%
GATGCGAAATAAACCCGTTC+CGG - chr2_3:6168956-6168975 None:intergenic 45.0%
! GGAACGGGTTTATTTCGCAT+CGG + chr2_3:6168955-6168974 Msa0274320:CDS 45.0%
! GGCTTTATAGGGATTCGTGT+AGG + chr2_3:6168976-6168995 Msa0274320:CDS 45.0%
TAGGGATTCGTGTAGGAATG+TGG + chr2_3:6168983-6169002 Msa0274320:CDS 45.0%
GATTCGTGTAGGAATGTGGA+AGG + chr2_3:6168987-6169006 Msa0274320:CDS 45.0%
TGTGGGAAGGGATTTGAAGA+AGG + chr2_3:6169034-6169053 Msa0274320:CDS 45.0%
ATGCTTGTGATCGTGAGCTT+TGG + chr2_3:6169135-6169154 Msa0274320:CDS 45.0%
!! CGTGAGCTTTGGAAATTGAG+AGG + chr2_3:6169146-6169165 Msa0274320:CDS 45.0%
AAGACATTAACCGTCGTCGT+TGG + chr2_3:6168442-6168461 Msa0274320:CDS 45.0%
!! TGAGAAGCTTTGAAATGCGG+CGG - chr2_3:6168530-6168549 None:intergenic 45.0%
CGACGCTATCTTCAAAAAGC+AGG - chr2_3:6168665-6168684 None:intergenic 45.0%
TTCAAAAACTTCACCACCGC+CGG + chr2_3:6168758-6168777 Msa0274320:CDS 45.0%
AAATCAAATTTCTCCGGCGG+TGG - chr2_3:6168774-6168793 None:intergenic 45.0%
! ATCGGTTCACCATCAATCAC+CGG - chr2_3:6168807-6168826 None:intergenic 45.0%
TTTCTACGTGTTGAAGCGAC+CGG + chr2_3:6168830-6168849 Msa0274320:CDS 45.0%
ACCGGGGATTGATGAATTGT+TGG + chr2_3:6168848-6168867 Msa0274320:CDS 45.0%
! AGCGTTGAAATATGAGGTGG+TGG + chr2_3:6168878-6168897 Msa0274320:CDS 45.0%
! GCTTAAGGAGTATGCGAGTT+TGG + chr2_3:6168914-6168933 Msa0274320:CDS 45.0%
GATGCGAAATAAACCCGTTC+CGG - chr2_3:6168956-6168975 None:intergenic 45.0%
! GGAACGGGTTTATTTCGCAT+CGG + chr2_3:6168955-6168974 Msa0274320:CDS 45.0%
! GGCTTTATAGGGATTCGTGT+AGG + chr2_3:6168976-6168995 Msa0274320:CDS 45.0%
TAGGGATTCGTGTAGGAATG+TGG + chr2_3:6168983-6169002 Msa0274320:CDS 45.0%
GATTCGTGTAGGAATGTGGA+AGG + chr2_3:6168987-6169006 Msa0274320:CDS 45.0%
TGTGGGAAGGGATTTGAAGA+AGG + chr2_3:6169034-6169053 Msa0274320:CDS 45.0%
ATGCTTGTGATCGTGAGCTT+TGG + chr2_3:6169135-6169154 Msa0274320:CDS 45.0%
!! CGTGAGCTTTGGAAATTGAG+AGG + chr2_3:6169146-6169165 Msa0274320:CDS 45.0%
!! TTTTTCGACGCCAACGACGA+CGG - chr2_3:6168455-6168474 None:intergenic 50.0%
TCCGATAAAGAACGTCGTCG+CGG + chr2_3:6168476-6168495 Msa0274320:CDS 50.0%
GTGGATGGAAGAAAGAACGG+CGG - chr2_3:6168508-6168527 None:intergenic 50.0%
GCGGTGGATGGAAGAAAGAA+CGG - chr2_3:6168511-6168530 None:intergenic 50.0%
!! GGTGATTGATGGTGAACCGA+TGG + chr2_3:6168806-6168825 Msa0274320:CDS 50.0%
TTCTACGTGTTGAAGCGACC+GGG + chr2_3:6168831-6168850 Msa0274320:CDS 50.0%
!! TGAGGTGGTGGTTTTTACGG+CGG + chr2_3:6168890-6168909 Msa0274320:CDS 50.0%
GGAGTATGCGAGTTTGGTTG+TGG + chr2_3:6168920-6168939 Msa0274320:CDS 50.0%
ATGCGAGTTTGGTTGTGGAC+CGG + chr2_3:6168925-6168944 Msa0274320:CDS 50.0%
! GATCTGATCAAAGGCGTGTC+TGG + chr2_3:6169254-6169273 Msa0274320:CDS 50.0%
!! TTTTTCGACGCCAACGACGA+CGG - chr2_3:6168455-6168474 None:intergenic 50.0%
TCCGATAAAGAACGTCGTCG+CGG + chr2_3:6168476-6168495 Msa0274320:CDS 50.0%
GTGGATGGAAGAAAGAACGG+CGG - chr2_3:6168508-6168527 None:intergenic 50.0%
GCGGTGGATGGAAGAAAGAA+CGG - chr2_3:6168511-6168530 None:intergenic 50.0%
!! GGTGATTGATGGTGAACCGA+TGG + chr2_3:6168806-6168825 Msa0274320:CDS 50.0%
TTCTACGTGTTGAAGCGACC+GGG + chr2_3:6168831-6168850 Msa0274320:CDS 50.0%
!! TGAGGTGGTGGTTTTTACGG+CGG + chr2_3:6168890-6168909 Msa0274320:CDS 50.0%
GGAGTATGCGAGTTTGGTTG+TGG + chr2_3:6168920-6168939 Msa0274320:CDS 50.0%
ATGCGAGTTTGGTTGTGGAC+CGG + chr2_3:6168925-6168944 Msa0274320:CDS 50.0%
! GATCTGATCAAAGGCGTGTC+TGG + chr2_3:6169254-6169273 Msa0274320:CDS 50.0%
GCCGCGACGACGTTCTTTAT+CGG - chr2_3:6168480-6168499 None:intergenic 55.0%
GATGGAAGAAAGAACGGCGG+AGG - chr2_3:6168505-6168524 None:intergenic 55.0%
!! CTTTGAAATGCGGCGGTGGA+TGG - chr2_3:6168523-6168542 None:intergenic 55.0%
!! GAAGCTTTGAAATGCGGCGG+TGG - chr2_3:6168527-6168546 None:intergenic 55.0%
GTTCACCATCAATCACCGGC+CGG - chr2_3:6168803-6168822 None:intergenic 55.0%
TCTACGTGTTGAAGCGACCG+GGG + chr2_3:6168832-6168851 Msa0274320:CDS 55.0%
! GGTTTTTACGGCGGCGCTTA+AGG + chr2_3:6168899-6168918 Msa0274320:CDS 55.0%
GAGTTTGGTTGTGGACCGGT+TGG + chr2_3:6168929-6168948 Msa0274320:CDS 55.0%
TAAACCCGTTCCGGTCCAAC+CGG - chr2_3:6168947-6168966 None:intergenic 55.0%
GCCGCGACGACGTTCTTTAT+CGG - chr2_3:6168480-6168499 None:intergenic 55.0%
GATGGAAGAAAGAACGGCGG+AGG - chr2_3:6168505-6168524 None:intergenic 55.0%
!! CTTTGAAATGCGGCGGTGGA+TGG - chr2_3:6168523-6168542 None:intergenic 55.0%
!! GAAGCTTTGAAATGCGGCGG+TGG - chr2_3:6168527-6168546 None:intergenic 55.0%
GTTCACCATCAATCACCGGC+CGG - chr2_3:6168803-6168822 None:intergenic 55.0%
TCTACGTGTTGAAGCGACCG+GGG + chr2_3:6168832-6168851 Msa0274320:CDS 55.0%
! GGTTTTTACGGCGGCGCTTA+AGG + chr2_3:6168899-6168918 Msa0274320:CDS 55.0%
GAGTTTGGTTGTGGACCGGT+TGG + chr2_3:6168929-6168948 Msa0274320:CDS 55.0%
TAAACCCGTTCCGGTCCAAC+CGG - chr2_3:6168947-6168966 None:intergenic 55.0%
GTAGTCCGGCCGGTGATTGA+TGG + chr2_3:6168795-6168814 Msa0274320:CDS 60.0%
TGGTTGTGGACCGGTTGGAC+CGG + chr2_3:6168934-6168953 Msa0274320:CDS 60.0%
GTAGTCCGGCCGGTGATTGA+TGG + chr2_3:6168795-6168814 Msa0274320:CDS 60.0%
TGGTTGTGGACCGGTTGGAC+CGG + chr2_3:6168934-6168953 Msa0274320:CDS 60.0%
GTGGACCGGTTGGACCGGAA+CGG + chr2_3:6168939-6168958 Msa0274320:CDS 65.0%
TGGACCGGTTGGACCGGAAC+GGG + chr2_3:6168940-6168959 Msa0274320:CDS 65.0%
GTGGACCGGTTGGACCGGAA+CGG + chr2_3:6168939-6168958 Msa0274320:CDS 65.0%
TGGACCGGTTGGACCGGAAC+GGG + chr2_3:6168940-6168959 Msa0274320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6168399 6169283 6168399 ID=Msa0274320;Name=Msa0274320
chr2_3 mRNA 6168399 6169283 6168399 ID=Msa0274320-mRNA-1;Parent=Msa0274320;Name=Msa0274320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|294
chr2_3 exon 6168399 6169283 6168399 ID=Msa0274320-mRNA-1:exon:2855;Parent=Msa0274320-mRNA-1
chr2_3 CDS 6168399 6169283 6168399 ID=Msa0274320-mRNA-1:cds;Parent=Msa0274320-mRNA-1
Gene Sequence

>Msa0274320

ATGGTTTCGAAGACAAAGAAGAAAGCTTCAACCAAATCAATCAAAGACATTAACCGTCGTCGTTGGCGTCGAAAAACTCCGATAAAGAACGTCGTCGCGGCTTCCTCCGCCGTTCTTTCTTCCATCCACCGCCGCATTTCAAAGCTTCTCACAAAACTGGGACTCACTCGTCTCAGTTCTTCAAATCGGAAACGAAACAGCTACAAAATTCTCAAGAAATCAACACATTTCAACTTTCAACAGCAAGACACCGTTTGCAAAACCCTGCTTTTTGAAGATAGCGTCGAAAATTCTCTTCTTCCACCTTCAATATCTAATCGGAAAACCGTTTTTCTTGATTTAGATGAAACTTTGGTTCATTCAAAAACTTCACCACCGCCGGAGAAATTTGATTTTGTAGTCCGGCCGGTGATTGATGGTGAACCGATGGATTTCTACGTGTTGAAGCGACCGGGGATTGATGAATTGTTGGAAGCGTTAGCGTTGAAATATGAGGTGGTGGTTTTTACGGCGGCGCTTAAGGAGTATGCGAGTTTGGTTGTGGACCGGTTGGACCGGAACGGGTTTATTTCGCATCGGCTTTATAGGGATTCGTGTAGGAATGTGGAAGGGAAGCTTGTGAAAGATTTGGGTTTTGTGGGAAGGGATTTGAAGAAGGTTGTTATTGTTGATGATAATCCAGTTTCGTTTTCGAATCAACCTGAGAATGCGATTTTGATTAAGCCTTTTGTTGATGATGCTTGTGATCGTGAGCTTTGGAAATTGAGAGGCTTTTTTGATGGGTGTGATTGTTTTGATGATATGAGGGATGCTGTTAAACACTATGCTGCTGAGAAAGAACGTCGCTCGTGTTCAGATCTGATCAAAGGCGTGTCTGGTGTCTGA

Protein sequence

>Msa0274320

MVSKTKKKASTKSIKDINRRRWRRKTPIKNVVAASSAVLSSIHRRISKLLTKLGLTRLSSSNRKRNSYKILKKSTHFNFQQQDTVCKTLLFEDSVENSLLPPSISNRKTVFLDLDETLVHSKTSPPPEKFDFVVRPVIDGEPMDFYVLKRPGIDELLEALALKYEVVVFTAALKEYASLVVDRLDRNGFISHRLYRDSCRNVEGKLVKDLGFVGRDLKKVVIVDDNPVSFSNQPENAILIKPFVDDACDRELWKLRGFFDGCDCFDDMRDAVKHYAAEKERRSCSDLIKGVSGV*