AlfalfaGEDB | Msa0214370

M. sativa cultivar zhongmu-4 / Msa0214370

KEGG: -
GO: GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141
PFAM: PF03106.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0214370	AES66556.2	88.587	184	16	1	8	191	5	183	7.33e-116	337

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0214370	sp\|Q8GWF1\|WRK38_ARATH	47.475	99	40	2	21	118	99	186	8.08e-23	95.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0214370	G7ITD8	88.587	184	16	1	8	191	5	183	3.50e-116	337

TFs/TRs:

Gene ID	Type	Classification
Msa0214370	TF	WRKY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026450	Msa0214370	0.805797	1.122053e-49	-8.615850e-47
Msa0142220	Msa0214370	0.824040	1.000837e-53	-8.615850e-47
Msa0145260	Msa0214370	0.806807	6.876014e-50	-8.615850e-47
Msa0214300	Msa0214370	0.912007	3.185021e-83	-8.615850e-47
Msa0214370	Msa0214380	0.994201	2.334012e-205	-8.615850e-47
Msa0214370	Msa0294030	0.866983	1.911870e-65	-8.615850e-47
Msa0214370	Msa0329190	0.803440	3.483191e-49	-8.615850e-47
Msa0214370	Msa0407750	0.820194	7.802245e-53	-8.615850e-47
Msa0214370	Msa0436800	0.810145	1.333327e-50	-8.615850e-47
Msa0214370	Msa0458090	0.802802	4.718322e-49	-8.615850e-47
Msa0214370	Msa0545200	0.808891	2.478730e-50	-8.615850e-47
Msa0214370	Msa0600700	0.816825	4.529653e-52	-8.615850e-47
Msa0214370	Msa0678930	0.844448	7.513454e-59	-8.615850e-47
Msa0214370	Msa0811080	0.829746	4.332644e-55	-8.615850e-47
Msa0214370	Msa0885290	0.827283	1.704549e-54	-8.615850e-47
Msa0214370	Msa1023050	0.815223	1.031920e-51	-8.615850e-47
Msa0214370	Msa1092990	0.803194	3.915682e-49	-8.615850e-47
Msa0214370	Msa1100980	0.807187	5.712328e-50	-8.615850e-47
Msa0214370	Msa1146110	0.800945	1.135547e-48	-8.615850e-47
Msa0214370	Msa1187940	0.819024	1.442590e-52	-8.615850e-47
Msa0214370	Msa1187950	0.809456	1.875103e-50	-8.615850e-47
Msa0214370	Msa1192640	0.800539	1.374302e-48	-8.615850e-47
Msa0214370	Msa1253000	0.821962	3.054264e-53	-8.615850e-47
Msa0214370	Msa1260100	0.800354	1.499068e-48	-8.615850e-47
Msa0214370	Msa1285930	0.819707	1.008200e-52	-8.615850e-47
Msa0214370	Msa1297210	0.803275	3.768158e-49	-8.615850e-47
Msa0214370	Msa1451570	0.801527	8.634705e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0214370	MtrunA17_Chr2g0315401	84.962	133	15	1	59	191	19	146	1.11e-79	234
Msa0214370	MtrunA17_Chr2g0315341	88.000	125	15	0	67	191	1	125	1.28e-78	230
Msa0214370	MtrunA17_Chr2g0315381	51.685	178	79	4	16	189	129	303	4.88e-55	176
Msa0214370	MtrunA17_Chr2g0315361	51.786	168	71	5	16	176	133	297	2.25e-47	157
Msa0214370	MtrunA17_Chr2g0315371	48.588	177	80	4	16	184	126	299	2.59e-46	154
Msa0214370	MtrunA17_Chr7g0244981	45.029	171	71	6	16	182	107	258	8.41e-36	126
Msa0214370	MtrunA17_Chr7g0244971	54.369	103	46	1	16	118	108	209	3.62e-35	125
Msa0214370	MtrunA17_Chr8g0350621	41.606	137	72	4	16	145	96	231	1.52e-29	109
Msa0214370	MtrunA17_Chr8g0334541	49.038	104	48	2	16	118	88	187	7.07e-28	105
Msa0214370	MtrunA17_Chr8g0350631	53.947	76	31	3	52	125	5	78	1.49e-20	83.6
Msa0214370	MtrunA17_Chr3g0128671	50.000	68	34	0	27	94	123	190	2.71e-19	83.6
Msa0214370	MtrunA17_Chr8g0387981	53.333	60	28	0	31	90	132	191	2.36e-18	81.3
Msa0214370	MtrunA17_Chr5g0428351	37.705	122	66	3	16	133	169	284	2.61e-18	80.9
Msa0214370	MtrunA17_Chr7g0275531	49.180	61	31	0	30	90	117	177	6.95e-17	77.0
Msa0214370	MtrunA17_Chr3g0126391	49.180	61	31	0	30	90	132	192	1.07e-16	76.6
Msa0214370	MtrunA17_Chr8g0347251	46.875	64	34	0	30	93	135	198	1.62e-15	73.6
Msa0214370	MtrunA17_Chr4g0051881	45.570	79	38	2	30	106	177	252	3.36e-15	72.4
Msa0214370	MtrunA17_Chr4g0042831	35.514	107	66	1	9	115	256	359	3.56e-15	72.8
Msa0214370	MtrunA17_Chr8g0383351	48.333	60	28	1	29	88	158	214	2.76e-14	68.6
Msa0214370	MtrunA17_Chr5g0418191	39.216	102	50	4	29	122	318	415	1.05e-13	68.6
Msa0214370	MtrunA17_Chr5g0443131	47.761	67	30	2	30	94	156	219	1.78e-13	67.4
Msa0214370	MtrunA17_Chr7g0270191	50.847	59	26	1	30	88	144	199	2.38e-13	67.0
Msa0214370	MtrunA17_Chr3g0129361	46.667	60	29	1	29	88	142	198	2.63e-13	65.9
Msa0214370	MtrunA17_Chr7g0224801	46.667	60	29	1	29	88	91	147	4.07e-13	64.3
Msa0214370	MtrunA17_Chr5g0418781	49.153	59	27	1	30	88	123	178	4.14e-13	66.2
Msa0214370	MtrunA17_Chr1g0194481	49.153	59	27	1	30	88	157	212	8.63e-13	65.5
Msa0214370	MtrunA17_Chr7g0263531	41.860	86	46	2	25	110	356	437	8.64e-13	65.9
Msa0214370	MtrunA17_Chr2g0333851	42.029	69	38	1	21	89	159	225	1.29e-12	65.1
Msa0214370	MtrunA17_Chr8g0335811	45.902	61	30	1	29	89	152	209	1.81e-12	63.5
Msa0214370	MtrunA17_Chr7g0218081	38.961	77	44	1	13	89	392	465	2.39e-12	64.7
Msa0214370	MtrunA17_Chr4g0068541	40.541	74	40	2	16	88	192	262	2.44e-12	64.7
Msa0214370	MtrunA17_Chr5g0431811	43.750	64	36	0	31	94	672	735	5.17e-12	63.9
Msa0214370	MtrunA17_Chr5g0401821	43.056	72	39	1	32	103	200	269	5.80e-12	62.8
Msa0214370	MtrunA17_Chr7g0248721	47.541	61	28	2	29	89	139	195	6.44e-12	62.0
Msa0214370	MtrunA17_Chr3g0129321	45.902	61	30	1	29	89	116	173	1.50e-11	60.8
Msa0214370	MtrunA17_Chr2g0294231	45.763	59	29	1	30	88	202	257	1.77e-11	62.0
Msa0214370	MtrunA17_Chr7g0238921	50.000	60	27	1	29	88	122	178	2.20e-11	61.6
Msa0214370	MtrunA17_Chr5g0445311	44.262	61	31	1	29	89	362	419	2.22e-11	62.0
Msa0214370	MtrunA17_Chr1g0150281	39.241	79	42	2	11	89	124	196	2.27e-11	61.2
Msa0214370	MtrunA17_Chr4g0071521	39.726	73	42	1	32	104	246	316	4.09e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0214370	AT5G22570.1	47.475	99	40	2	21	118	99	186	8.21e-24	95.5
Msa0214370	AT1G66560.1	52.941	68	32	0	31	98	103	170	3.27e-21	87.8
Msa0214370	AT5G01900.1	54.545	66	30	0	26	91	105	170	4.24e-21	87.8
Msa0214370	AT1G66600.1	55.556	63	28	0	30	92	102	164	1.17e-20	86.3
Msa0214370	AT1G66550.2	50.746	67	33	0	32	98	104	170	4.57e-20	84.7
Msa0214370	AT1G66550.1	45.000	80	43	1	20	98	96	175	5.69e-20	84.7
Msa0214370	AT3G56400.1	44.872	78	40	1	16	93	108	182	1.59e-19	84.3
Msa0214370	AT1G80590.1	52.459	61	29	0	32	92	86	146	7.21e-19	81.3
Msa0214370	AT5G24110.1	46.341	82	39	2	30	107	112	192	1.44e-17	79.0
Msa0214370	AT4G11070.2	45.312	64	35	0	31	94	109	172	1.21e-15	73.6
Msa0214370	AT4G11070.1	45.312	64	35	0	31	94	141	204	1.65e-15	73.6
Msa0214370	AT2G46400.1	47.541	61	32	0	30	90	103	163	2.19e-15	72.8
Msa0214370	AT2G40750.1	42.500	80	43	1	11	90	135	211	3.83e-15	72.8
Msa0214370	AT4G23810.1	43.284	67	38	0	31	97	158	224	4.29e-15	72.4
Msa0214370	AT2G40740.1	45.000	60	33	0	31	90	173	232	5.47e-15	71.6
Msa0214370	AT2G40740.3	45.000	60	33	0	31	90	182	241	6.67e-15	71.6
Msa0214370	AT1G64000.1	49.180	61	28	1	29	89	112	169	2.64e-14	68.6
Msa0214370	AT2G03340.1	38.614	101	53	3	29	123	413	510	5.34e-14	69.7
Msa0214370	AT2G37260.1	50.000	60	27	1	30	89	348	404	9.62e-14	68.9
Msa0214370	AT2G37260.2	50.000	60	27	1	30	89	266	322	1.21e-13	68.6
Msa0214370	AT2G37260.3	50.000	60	27	1	30	89	268	324	1.27e-13	68.6
Msa0214370	AT5G41570.1	47.541	61	29	1	29	89	96	153	2.67e-13	65.5
Msa0214370	AT4G18170.1	50.000	60	27	1	30	89	171	227	3.38e-13	67.0
Msa0214370	AT1G29860.1	50.000	60	27	1	30	89	135	191	3.93e-13	66.6
Msa0214370	AT1G69310.4	47.458	59	28	1	30	88	146	201	5.34e-13	66.2
Msa0214370	AT1G69310.2	47.458	59	28	1	30	88	146	201	5.34e-13	66.2
Msa0214370	AT1G69310.1	47.458	59	28	1	30	88	146	201	5.34e-13	66.2
Msa0214370	AT2G46130.1	43.939	66	34	1	24	89	23	85	5.43e-13	62.8
Msa0214370	AT4G31800.2	43.478	69	37	1	21	89	101	167	6.25e-13	65.5
Msa0214370	AT4G31800.1	43.478	69	37	1	21	89	166	232	9.23e-13	65.9
Msa0214370	AT4G39410.1	45.000	60	30	1	29	88	221	277	1.29e-12	65.5
Msa0214370	AT2G44745.1	45.902	61	30	1	29	89	143	200	1.41e-12	64.3
Msa0214370	AT5G13080.1	47.541	61	29	1	29	89	65	122	1.73e-12	62.4
Msa0214370	AT5G49520.1	47.458	59	28	1	30	88	220	275	1.75e-12	65.5
Msa0214370	AT5G46350.1	48.333	60	28	1	30	89	182	238	1.89e-12	65.1
Msa0214370	AT1G13960.1	47.541	61	29	1	29	89	407	464	2.20e-12	65.1
Msa0214370	AT2G25000.2	44.615	65	34	1	25	89	97	159	3.59e-12	63.2
Msa0214370	AT2G25000.4	44.615	65	34	1	25	89	97	159	3.59e-12	63.2
Msa0214370	AT2G25000.3	44.615	65	34	1	25	89	119	181	4.56e-12	63.2
Msa0214370	AT2G47260.1	43.662	71	37	1	30	100	173	240	5.02e-12	63.9
Msa0214370	AT1G13960.2	47.541	61	29	1	29	89	254	311	5.26e-12	63.9
Msa0214370	AT2G25000.1	44.615	65	34	1	25	89	140	202	5.77e-12	63.2
Msa0214370	AT5G26170.1	40.984	61	33	1	29	89	111	168	9.04e-12	61.2
Msa0214370	AT2G04880.2	47.541	61	29	1	29	89	281	338	1.08e-11	63.2
Msa0214370	AT2G04880.1	47.541	61	29	1	29	89	305	362	1.16e-11	63.2
Msa0214370	AT5G45260.1	44.828	58	32	0	32	89	1209	1266	2.15e-11	62.4
Msa0214370	AT3G01080.2	35.227	88	54	1	2	89	315	399	3.86e-11	61.6
Msa0214370	AT3G01080.1	35.227	88	54	1	2	89	277	361	4.51e-11	61.2
Msa0214370	AT2G30590.1	50.000	58	27	1	32	89	314	369	8.79e-11	60.5

Find 37 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCAGATATCACATTAT+TGG	0.160744	2_1:+58918343	Msa0214370:CDS
AAGTCTTGCATGGTGATTTA+AGG	0.219986	2_1:+58918650	Msa0214370:three_prime_UTR
CAAAGAAATATGGTATTTAT+TGG	0.246728	2_1:+58917944	Msa0214370:CDS
GGTAATTTGATGAAGTTAAT+TGG	0.253799	2_1:-58918517	None:intergenic
ATGCAAGACTTACCAAATTT+AGG	0.281692	2_1:-58918638	None:intergenic
CTGAACAATGTGATTATGAT+AGG	0.312734	2_1:-58918492	None:intergenic
AACATAGAAGAAGTATTATT+AGG	0.316397	2_1:-58918368	None:intergenic
TAATATATGGTTCTGTATAA+TGG	0.331566	2_1:-58918290	None:intergenic
TGTGATATCTGAATTTAATA+AGG	0.337409	2_1:-58918336	None:intergenic
GGCTATGAATGGAGAAAGTA+TGG	0.339396	2_1:+58918038	Msa0214370:CDS
ATTATGATGGCCATAATATA+TGG	0.342578	2_1:-58918303	None:intergenic
TTATACAGAACCATATATTA+TGG	0.345556	2_1:+58918293	Msa0214370:CDS
ATAGCCATCTTCAATCAAAA+TGG	0.352259	2_1:-58918021	None:intergenic
GTTAGTTGTACAAAGAAATA+TGG	0.364726	2_1:+58917934	None:intergenic
ATCATGAAATGGAACAGATT+TGG	0.391587	2_1:-58918603	None:intergenic
TAAGATCAAAAGCACTTACT+TGG	0.396882	2_1:+58917985	Msa0214370:CDS
GGTATTCTTCTTTGACTTGG+AGG	0.404519	2_1:-58918409	None:intergenic
AGCTTGAATTTGATTATGTC+AGG	0.407739	2_1:+58918558	Msa0214370:CDS
AACTAAAATCCATCATGAAA+TGG	0.413831	2_1:-58918614	None:intergenic
CTATCATAATCACATTGTTC+AGG	0.421495	2_1:+58918493	Msa0214370:CDS
TAGGGATTAATAACATCTAT+AGG	0.441096	2_1:-58918473	None:intergenic
TAGGGTATTCTTCTTTGACT+TGG	0.474910	2_1:-58918412	None:intergenic
AAATCTGTTCCATTTCATGA+TGG	0.493216	2_1:+58918605	Msa0214370:CDS
TGATTGAAGATGGCTATGAA+TGG	0.519157	2_1:+58918027	Msa0214370:CDS
TAATCAATGCAAAATACCTC+AGG	0.531627	2_1:+58918072	Msa0214370:CDS
GGAGGCTGTCATTGAAGCTA+AGG	0.539380	2_1:-58918391	None:intergenic
GATATCTGAATTTAATAAGG+AGG	0.556236	2_1:-58918333	None:intergenic
TAAATTTGGTAAGTCTTGCA+TGG	0.561375	2_1:+58918640	Msa0214370:three_prime_UTR
TGAACAATGTGATTATGATA+GGG	0.568947	2_1:-58918491	None:intergenic
ATGAAATGGAACAGATTTGG+TGG	0.571370	2_1:-58918600	None:intergenic
AAGATCAAAAGCACTTACTT+GGG	0.571753	2_1:+58917986	Msa0214370:CDS
AAAAGCACTTACTTGGGAGA+AGG	0.572656	2_1:+58917992	Msa0214370:CDS
TATATGGTTCTGTATAATGG+AGG	0.587652	2_1:-58918287	None:intergenic
GCTTATAGTCACACGAGAGA+GGG	0.601270	2_1:-58918538	None:intergenic
ATATGGTTCTGTATAATGGA+GGG	0.605962	2_1:-58918286	None:intergenic
ACATGTGCAGAGAATTCAAG+AGG	0.632753	2_1:+58918262	Msa0214370:CDS
AGCTTATAGTCACACGAGAG+AGG	0.647350	2_1:-58918539	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAAAGAAATATGGTATTTAT+TGG	+	chr2_1:58917944-58917963	Msa0214370:CDS	20.0%
!!	AGAATAAATAGTTTCATAGA+AGG	-	chr2_1:58918151-58918170	None:intergenic	20.0%
!!	CAATATGTGAATCATATTAT+AGG	+	chr2_1:58918189-58918208	Msa0214370:intron	20.0%
!!!	TAATATATGGTTCTGTATAA+TGG	-	chr2_1:58918293-58918312	None:intergenic	20.0%
!!	TTATACAGAACCATATATTA+TGG	+	chr2_1:58918293-58918312	Msa0214370:CDS	20.0%
!!	TGTGATATCTGAATTTAATA+AGG	-	chr2_1:58918339-58918358	None:intergenic	20.0%
!!	AAATTCAGATATCACATTAT+TGG	+	chr2_1:58918343-58918362	Msa0214370:CDS	20.0%
!!!	AACATAGAAGAAGTATTATT+AGG	-	chr2_1:58918371-58918390	None:intergenic	20.0%
!!	CAAAGAAATATGGTATTTAT+TGG	+	chr2_1:58917944-58917963	Msa0214370:CDS	20.0%
!!	AGAATAAATAGTTTCATAGA+AGG	-	chr2_1:58918151-58918170	None:intergenic	20.0%
!!	CAATATGTGAATCATATTAT+AGG	+	chr2_1:58918189-58918208	Msa0214370:intron	20.0%
!!!	TAATATATGGTTCTGTATAA+TGG	-	chr2_1:58918293-58918312	None:intergenic	20.0%
!!	TTATACAGAACCATATATTA+TGG	+	chr2_1:58918293-58918312	Msa0214370:CDS	20.0%
!!	TGTGATATCTGAATTTAATA+AGG	-	chr2_1:58918339-58918358	None:intergenic	20.0%
!!	AAATTCAGATATCACATTAT+TGG	+	chr2_1:58918343-58918362	Msa0214370:CDS	20.0%
!!!	AACATAGAAGAAGTATTATT+AGG	-	chr2_1:58918371-58918390	None:intergenic	20.0%
!	ATTGAAGATATATATACCTG+AGG	-	chr2_1:58918091-58918110	None:intergenic	25.0%
!	ATTATGATGGCCATAATATA+TGG	-	chr2_1:58918306-58918325	None:intergenic	25.0%
!	GATATCTGAATTTAATAAGG+AGG	-	chr2_1:58918336-58918355	None:intergenic	25.0%
!	AAAGTGGTGATAAAAATGTA+GGG	-	chr2_1:58918433-58918452	None:intergenic	25.0%
!	TAGGGATTAATAACATCTAT+AGG	-	chr2_1:58918476-58918495	None:intergenic	25.0%
!	TGAACAATGTGATTATGATA+GGG	-	chr2_1:58918494-58918513	None:intergenic	25.0%
!	GGTAATTTGATGAAGTTAAT+TGG	-	chr2_1:58918520-58918539	None:intergenic	25.0%
!	AACTAAAATCCATCATGAAA+TGG	-	chr2_1:58918617-58918636	None:intergenic	25.0%
!!!	GGATTTTAGTTACCTAAATT+TGG	+	chr2_1:58918626-58918645	Msa0214370:exon	25.0%
!	ATTGAAGATATATATACCTG+AGG	-	chr2_1:58918091-58918110	None:intergenic	25.0%
!	ATTATGATGGCCATAATATA+TGG	-	chr2_1:58918306-58918325	None:intergenic	25.0%
!	GATATCTGAATTTAATAAGG+AGG	-	chr2_1:58918336-58918355	None:intergenic	25.0%
!	AAAGTGGTGATAAAAATGTA+GGG	-	chr2_1:58918433-58918452	None:intergenic	25.0%
!	TAGGGATTAATAACATCTAT+AGG	-	chr2_1:58918476-58918495	None:intergenic	25.0%
!	TGAACAATGTGATTATGATA+GGG	-	chr2_1:58918494-58918513	None:intergenic	25.0%
!	GGTAATTTGATGAAGTTAAT+TGG	-	chr2_1:58918520-58918539	None:intergenic	25.0%
!	AACTAAAATCCATCATGAAA+TGG	-	chr2_1:58918617-58918636	None:intergenic	25.0%
!!!	GGATTTTAGTTACCTAAATT+TGG	+	chr2_1:58918626-58918645	Msa0214370:exon	25.0%
!!	TAAGATCAAAAGCACTTACT+TGG	+	chr2_1:58917985-58918004	Msa0214370:CDS	30.0%
!!	AAGATCAAAAGCACTTACTT+GGG	+	chr2_1:58917986-58918005	Msa0214370:CDS	30.0%
	ATAGCCATCTTCAATCAAAA+TGG	-	chr2_1:58918024-58918043	None:intergenic	30.0%
	TAATCAATGCAAAATACCTC+AGG	+	chr2_1:58918072-58918091	Msa0214370:CDS	30.0%
!	ATATGGTTCTGTATAATGGA+GGG	-	chr2_1:58918289-58918308	None:intergenic	30.0%
!	TATATGGTTCTGTATAATGG+AGG	-	chr2_1:58918290-58918309	None:intergenic	30.0%
	GAAAGTGGTGATAAAAATGT+AGG	-	chr2_1:58918434-58918453	None:intergenic	30.0%
!!	TGTTTTGTTGATACAGAAAG+TGG	-	chr2_1:58918449-58918468	None:intergenic	30.0%
	CTGAACAATGTGATTATGAT+AGG	-	chr2_1:58918495-58918514	None:intergenic	30.0%
	CTATCATAATCACATTGTTC+AGG	+	chr2_1:58918493-58918512	Msa0214370:CDS	30.0%
	AGCTTGAATTTGATTATGTC+AGG	+	chr2_1:58918558-58918577	Msa0214370:CDS	30.0%
	ATCATGAAATGGAACAGATT+TGG	-	chr2_1:58918606-58918625	None:intergenic	30.0%
	AAATCTGTTCCATTTCATGA+TGG	+	chr2_1:58918605-58918624	Msa0214370:CDS	30.0%
	ATGCAAGACTTACCAAATTT+AGG	-	chr2_1:58918641-58918660	None:intergenic	30.0%
	TAAATTTGGTAAGTCTTGCA+TGG	+	chr2_1:58918640-58918659	Msa0214370:three_prime_UTR	30.0%
!!	TAAGATCAAAAGCACTTACT+TGG	+	chr2_1:58917985-58918004	Msa0214370:CDS	30.0%
!!	AAGATCAAAAGCACTTACTT+GGG	+	chr2_1:58917986-58918005	Msa0214370:CDS	30.0%
	ATAGCCATCTTCAATCAAAA+TGG	-	chr2_1:58918024-58918043	None:intergenic	30.0%
	TAATCAATGCAAAATACCTC+AGG	+	chr2_1:58918072-58918091	Msa0214370:CDS	30.0%
!	ATATGGTTCTGTATAATGGA+GGG	-	chr2_1:58918289-58918308	None:intergenic	30.0%
!	TATATGGTTCTGTATAATGG+AGG	-	chr2_1:58918290-58918309	None:intergenic	30.0%
	GAAAGTGGTGATAAAAATGT+AGG	-	chr2_1:58918434-58918453	None:intergenic	30.0%
!!	TGTTTTGTTGATACAGAAAG+TGG	-	chr2_1:58918449-58918468	None:intergenic	30.0%
	CTGAACAATGTGATTATGAT+AGG	-	chr2_1:58918495-58918514	None:intergenic	30.0%
	CTATCATAATCACATTGTTC+AGG	+	chr2_1:58918493-58918512	Msa0214370:CDS	30.0%
	AGCTTGAATTTGATTATGTC+AGG	+	chr2_1:58918558-58918577	Msa0214370:CDS	30.0%
	ATCATGAAATGGAACAGATT+TGG	-	chr2_1:58918606-58918625	None:intergenic	30.0%
	AAATCTGTTCCATTTCATGA+TGG	+	chr2_1:58918605-58918624	Msa0214370:CDS	30.0%
	ATGCAAGACTTACCAAATTT+AGG	-	chr2_1:58918641-58918660	None:intergenic	30.0%
	TAAATTTGGTAAGTCTTGCA+TGG	+	chr2_1:58918640-58918659	Msa0214370:three_prime_UTR	30.0%
!!!	AGCTCCATTTTGATTGAAGA+TGG	+	chr2_1:58918017-58918036	Msa0214370:CDS	35.0%
	TGATTGAAGATGGCTATGAA+TGG	+	chr2_1:58918027-58918046	Msa0214370:CDS	35.0%
!	AGGAGGTTTTGCAATTATGA+TGG	-	chr2_1:58918319-58918338	None:intergenic	35.0%
!	TAGGGTATTCTTCTTTGACT+TGG	-	chr2_1:58918415-58918434	None:intergenic	35.0%
	ATGAAATGGAACAGATTTGG+TGG	-	chr2_1:58918603-58918622	None:intergenic	35.0%
	AAGTCTTGCATGGTGATTTA+AGG	+	chr2_1:58918650-58918669	Msa0214370:three_prime_UTR	35.0%
!!!	AGCTCCATTTTGATTGAAGA+TGG	+	chr2_1:58918017-58918036	Msa0214370:CDS	35.0%
	TGATTGAAGATGGCTATGAA+TGG	+	chr2_1:58918027-58918046	Msa0214370:CDS	35.0%
!	AGGAGGTTTTGCAATTATGA+TGG	-	chr2_1:58918319-58918338	None:intergenic	35.0%
!	TAGGGTATTCTTCTTTGACT+TGG	-	chr2_1:58918415-58918434	None:intergenic	35.0%
	ATGAAATGGAACAGATTTGG+TGG	-	chr2_1:58918603-58918622	None:intergenic	35.0%
	AAGTCTTGCATGGTGATTTA+AGG	+	chr2_1:58918650-58918669	Msa0214370:three_prime_UTR	35.0%
!!	AAAAGCACTTACTTGGGAGA+AGG	+	chr2_1:58917992-58918011	Msa0214370:CDS	40.0%
	GGCTATGAATGGAGAAAGTA+TGG	+	chr2_1:58918038-58918057	Msa0214370:CDS	40.0%
	ACATGTGCAGAGAATTCAAG+AGG	+	chr2_1:58918262-58918281	Msa0214370:CDS	40.0%
!!	GGTATTCTTCTTTGACTTGG+AGG	-	chr2_1:58918412-58918431	None:intergenic	40.0%
!!	AAAAGCACTTACTTGGGAGA+AGG	+	chr2_1:58917992-58918011	Msa0214370:CDS	40.0%
	GGCTATGAATGGAGAAAGTA+TGG	+	chr2_1:58918038-58918057	Msa0214370:CDS	40.0%
	ACATGTGCAGAGAATTCAAG+AGG	+	chr2_1:58918262-58918281	Msa0214370:CDS	40.0%
!!	GGTATTCTTCTTTGACTTGG+AGG	-	chr2_1:58918412-58918431	None:intergenic	40.0%
	GCTTATAGTCACACGAGAGA+GGG	-	chr2_1:58918541-58918560	None:intergenic	45.0%
	AGCTTATAGTCACACGAGAG+AGG	-	chr2_1:58918542-58918561	None:intergenic	45.0%
	GCTTATAGTCACACGAGAGA+GGG	-	chr2_1:58918541-58918560	None:intergenic	45.0%
	AGCTTATAGTCACACGAGAG+AGG	-	chr2_1:58918542-58918561	None:intergenic	45.0%
	GGAGGCTGTCATTGAAGCTA+AGG	-	chr2_1:58918394-58918413	None:intergenic	50.0%
	GGAGGCTGTCATTGAAGCTA+AGG	-	chr2_1:58918394-58918413	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	58917942	58918711	58917942	ID=Msa0214370;Name=Msa0214370
chr2_1	mRNA	58917942	58918711	58917942	ID=Msa0214370-mRNA-1;Parent=Msa0214370;Name=Msa0214370-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|1\|1\|1\|1\|1\|2\|77\|191
chr2_1	exon	58917942	58918093	58917942	ID=Msa0214370-mRNA-1:exon:16161;Parent=Msa0214370-mRNA-1
chr2_1	exon	58918211	58918711	58918211	ID=Msa0214370-mRNA-1:exon:16162;Parent=Msa0214370-mRNA-1
chr2_1	CDS	58917942	58918093	58917942	ID=Msa0214370-mRNA-1:cds;Parent=Msa0214370-mRNA-1
chr2_1	CDS	58918211	58918634	58918211	ID=Msa0214370-mRNA-1:cds;Parent=Msa0214370-mRNA-1
chr2_1	three_prime_UTR	58918635	58918711	58918635	ID=Msa0214370-mRNA-1:three_prime_utr;Parent=Msa0214370-mRNA-1

Gene Sequence

>Msa0214370

TACAAAGAAATATGGTATTTATTGGTAGACTATTTCACTTTGATAAGATCAAAAGCACTTACTTGGGAGAAGGATAGCTCCATTTTGATTGAAGATGGCTATGAATGGAGAAAGTATGGACAAAAGAAGATAATCAATGCAAAATACCTCAGGAGCTACTACAGATGCAGTTACAAAAGTGATGAAGAATGTGAAGCTATGAAACATGTGCAGAGAATTCAAGAGGACCCTCCATTATACAGAACCATATATTATGGCCATCATAATTGCAAAACCTCCTTATTAAATTCAGATATCACATTATTGGAACCTAATAATACTTCTTCTATGTTCCTTAGCTTCAATGACAGCCTCCAAGTCAAAGAAGAATACCCTACATTTTTATCACCACTTTCTGTATCAACAAAACAAGAGCCTATAGATGTTATTAATCCCTATCATAATCACATTGTTCAGGACCAATTAACTTCATCAAATTACCCTCTCTCGTGTGACTATAAGCTTGAATTTGATTATGTCAGGCATGCTACTATGCTATCATCCACCAAATCTGTTCCATTTCATGATGGATTTTAG

Protein sequence

>Msa0214370

YKEIWYLLVDYFTLIRSKALTWEKDSSILIEDGYEWRKYGQKKIINAKYLRSYYRCSYKSDEECEAMKHVQRIQEDPPLYRTIYYGHHNCKTSLLNSDITLLEPNNTSSMFLSFNDSLQVKEEYPTFLSPLSVSTKQEPIDVINPYHNHIVQDQLTSSNYPLSCDYKLEFDYVRHATMLSSTKSVPFHDGF*