AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433360 MtrunA17_Chr3g0138941 97.207 358 10 0 1 358 1 358 0.0 731
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433360 AT5G10710.1 61.709 316 111 4 45 358 1 308 1.27e-141 404
Msa0433360 AT5G10710.3 57.278 316 111 5 45 358 1 294 6.39e-125 361
Msa0433360 AT5G10710.2 68.398 231 69 3 45 273 1 229 2.57e-113 329

Find 80 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCATCATGTTGAAAAT+TGG 0.207042 3_2:+85750377 None:intergenic
GCTTAAAAGACATGAAAATT+TGG 0.221907 3_2:-85754813 Msa0433360:CDS
ATTTGGCTGACCGTATTTCT+AGG 0.259043 3_2:-85754796 Msa0433360:intron
AGACTTATAAAGGAACTTTA+TGG 0.261283 3_2:-85750798 Msa0433360:CDS
TATATAGTACCTAGCGAAAT+TGG 0.269534 3_2:-85749710 Msa0433360:three_prime_UTR
CCTAGCGAAATTGGTTATAT+AGG 0.340894 3_2:-85749701 Msa0433360:three_prime_UTR
GCTAGGTACTATATAACTTC+TGG 0.356582 3_2:+85749718 None:intergenic
TCTTGTACCATTTGTACAAC+AGG 0.378391 3_2:-85749596 Msa0433360:three_prime_UTR
CATGCAGGTCAGACTTATAA+AGG 0.380694 3_2:-85750808 Msa0433360:intron
AGACATAACTGAGTAAAGTT+TGG 0.383686 3_2:-85755348 Msa0433360:five_prime_UTR
GGAGCAGATAATTTGCTGTT+TGG 0.394698 3_2:-85751991 Msa0433360:intron
CAGAAATTCATTGATCATGT+TGG 0.434843 3_2:-85751563 Msa0433360:CDS
TGTTTGGAAGGAGCAAGAAT+TGG 0.441864 3_2:-85751975 Msa0433360:CDS
TCGATACACAGATCTCATTT+CGG 0.451039 3_2:-85750456 Msa0433360:CDS
GAACTTTATGGAAATCAAAT+CGG 0.451964 3_2:-85750786 Msa0433360:CDS
ATGTATCCCTGTTGTACAAA+TGG 0.455077 3_2:+85749589 None:intergenic
ATGATGGAAGATGGAATCTC+AGG 0.459261 3_2:-85750365 Msa0433360:CDS
GAAATTGGTTATATAGGTTG+AGG 0.462124 3_2:-85749695 Msa0433360:three_prime_UTR
CTTGTTGCGAGAGGGATAAT+CGG 0.462940 3_2:+85755242 None:intergenic
GTGATCTTGTCAGGTGCATA+TGG 0.466433 3_2:-85753839 Msa0433360:intron
GTAGAATTTATCTTCGACAT+TGG 0.467570 3_2:+85750401 None:intergenic
CAGATAATTTGCTGTTTGGA+AGG 0.473656 3_2:-85751987 Msa0433360:CDS
TTCACCTTCTGGTAGACTCA+TGG 0.476510 3_2:+85750292 None:intergenic
CGCGATGCGATTCGTTGAAA+CGG 0.476706 3_2:-85755322 Msa0433360:exon
ATACGTGGATAGACGGGAAC+AGG 0.478284 3_2:-85751525 Msa0433360:intron
CTCGAATCTCAGTGCTAGCC+TGG 0.481978 3_2:-85750424 Msa0433360:CDS
TCTTCTATGTCACTGAGTGT+TGG 0.486474 3_2:+85755376 None:intergenic
TATTCCTTCAATATCCTCTC+TGG 0.494467 3_2:-85749624 Msa0433360:three_prime_UTR
GAGAAAGTTACCTAGAAATA+CGG 0.501508 3_2:+85754786 None:intergenic
TGGACGGACGTATGCACCCA+TGG 0.509184 3_2:-85755078 Msa0433360:CDS
GGGATAATCGGCAGAGTGAA+AGG 0.509209 3_2:+85755254 None:intergenic
ACAAACTCGATCATGTGATA+AGG 0.514790 3_2:+85750744 None:intergenic
TAGGATAGTCGAACTGATGC+AGG 0.517497 3_2:+85750335 None:intergenic
AGAATCTAAGACTGCAGAAA+GGG 0.517798 3_2:+85749792 None:intergenic
GATGGGGAACAGTGGAATGA+TGG 0.520649 3_2:-85754020 Msa0433360:CDS
TGCAAGCATACGTGGATAGA+CGG 0.523288 3_2:-85751532 Msa0433360:CDS
TGACGTATTAACAAGCCATC+AGG 0.529984 3_2:-85753785 Msa0433360:CDS
ATTTATCTTCGACATTGGCC+AGG 0.530939 3_2:+85750406 None:intergenic
GGACGGACGTATGCACCCAT+GGG 0.534852 3_2:-85755077 Msa0433360:CDS
CCGCAGTTTGAACAATATGC+TGG 0.540600 3_2:-85755098 Msa0433360:intron
TGGTAGACTCATGGTTCGTA+AGG 0.549313 3_2:+85750301 None:intergenic
GCAAGATGATGATAGTCGCT+TGG 0.551967 3_2:-85754951 Msa0433360:CDS
AAAATGGAACTGTGTGCTCA+AGG 0.553374 3_2:+85751718 None:intergenic
GAGAATCTAAGACTGCAGAA+AGG 0.553556 3_2:+85749791 None:intergenic
TGCAGAAAGGGCGAAGCTCT+AGG 0.556381 3_2:+85749804 None:intergenic
ACTTGCTACAATAAGAGAGC+AGG 0.563333 3_2:-85753994 Msa0433360:intron
GCAAGCATACGTGGATAGAC+GGG 0.564586 3_2:-85751531 Msa0433360:CDS
TATATCTGCTGAAGTGCTTG+TGG 0.569777 3_2:+85749838 None:intergenic
GCTAGCACTGAGATTCGAGT+TGG 0.570019 3_2:+85750428 None:intergenic
AGGATATTGAAGGAATAGCG+AGG 0.584158 3_2:+85749630 None:intergenic
ACGGAGGGAGTATGTAGCTA+CGG 0.585508 3_2:-85755433 Msa0433360:intron
TTTAGAGATATATTTAGATG+GGG 0.590120 3_2:-85754036 Msa0433360:intron
CCTATATAACCAATTTCGCT+AGG 0.591483 3_2:+85749701 None:intergenic
TATATTTAGATGGGGAACAG+TGG 0.594269 3_2:-85754028 Msa0433360:CDS
TCCTTCAATATCCTCTCTGG+TGG 0.597362 3_2:-85749621 Msa0433360:three_prime_UTR
AGCGAGGGAGCAATATATGT+TGG 0.597504 3_2:+85749646 None:intergenic
TCTTCTTTCATCCAATGCAA+TGG 0.597510 3_2:-85751667 Msa0433360:intron
GAAGGGACCTTGTTGCGAGA+GGG 0.597833 3_2:+85755234 None:intergenic
ATTACAGGTATATAGAATTG+TGG 0.598252 3_2:+85749523 None:intergenic
CGATTATCCCTCTCGCAACA+AGG 0.599074 3_2:-85755241 Msa0433360:intron
ACCACCAGAGAGGATATTGA+AGG 0.599427 3_2:+85749620 None:intergenic
GGATATTGAAGGAATAGCGA+GGG 0.600172 3_2:+85749631 None:intergenic
AGATCTATTGCAAGCATACG+TGG 0.604226 3_2:-85751540 Msa0433360:CDS
AAATGAGATCTGTGTATCGA+AGG 0.604667 3_2:+85750459 None:intergenic
AATTAACAGGGATTCTGACA+AGG 0.606528 3_2:-85754704 Msa0433360:intron
AGAAGGGACCTTGTTGCGAG+AGG 0.608665 3_2:+85755233 None:intergenic
CTTGTACCATTTGTACAACA+GGG 0.614869 3_2:-85749595 Msa0433360:three_prime_UTR
CAGAGTGAAAGGAATTACTT+CGG 0.620744 3_2:+85755265 None:intergenic
TACATATAAAACTGGAAACA+AGG 0.626563 3_2:-85753755 Msa0433360:intron
ACTCGATCATGTGATAAGGA+AGG 0.628301 3_2:+85750748 None:intergenic
CGTTGAAACGGAGAGCGATG+CGG 0.630811 3_2:-85755310 Msa0433360:CDS
GACGGACGTATGCACCCATG+GGG 0.641963 3_2:-85755076 Msa0433360:CDS
CAAGACTCGATGATTAACGA+TGG 0.662411 3_2:+85755738 None:intergenic
GCACGAGCTTCTCAAACACA+AGG 0.674546 3_2:-85754646 Msa0433360:intron
ATCTTGTCAGGTGCATATGG+AGG 0.680322 3_2:-85753836 Msa0433360:intron
AGTTTGAACAATATGCTGGA+CGG 0.688660 3_2:-85755094 Msa0433360:CDS
ACTTACTCTCCAGCACGCAG+TGG 0.705433 3_2:+85751763 None:intergenic
CGAACCATGAGTCTACCAGA+AGG 0.717534 3_2:-85750296 Msa0433360:intron
GGTACAAGACACCACCAGAG+AGG 0.725071 3_2:+85749610 None:intergenic
ACGGACGTATGCACCCATGG+GGG 0.801481 3_2:-85755075 Msa0433360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATATTTGTATCAA+TGG + chr3_2:85749638-85749657 None:intergenic 10.0%
!! TAATAATTTGAAAAATAGAA+AGG + chr3_2:85750708-85750727 None:intergenic 10.0%
!!! AATAGTTTTGATTTTATTAT+AGG - chr3_2:85752089-85752108 Msa0433360:intron 10.0%
!! AATTAAAATGAAAAAGATAA+TGG + chr3_2:85752396-85752415 None:intergenic 10.0%
!! TTAAGGAAATAATAAAATAT+TGG - chr3_2:85752839-85752858 Msa0433360:intron 10.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr3_2:85749833-85749852 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr3_2:85749833-85749852 Msa0433360:CDS 15.0%
!! TATATATATTTGTTTGTATC+AGG + chr3_2:85750417-85750436 None:intergenic 15.0%
!!! ATTTCTTCTTTTTAATTAAC+AGG - chr3_2:85750568-85750587 Msa0433360:intron 15.0%
!!! TTTCTTCTTTTTAATTAACA+GGG - chr3_2:85750569-85750588 Msa0433360:intron 15.0%
!! AATAAAATTGACATCAAATT+TGG - chr3_2:85750802-85750821 Msa0433360:CDS 15.0%
!!! TCTCTAAAAAAAAAAAAAAG+AGG + chr3_2:85751237-85751256 None:intergenic 15.0%
!!! TTTTTAGAGATATATTTAGA+TGG - chr3_2:85751247-85751266 Msa0433360:intron 15.0%
!!! TTTTAGAGATATATTTAGAT+GGG - chr3_2:85751248-85751267 Msa0433360:intron 15.0%
!!! ATATCTTTTCATTTATTTCT+AGG - chr3_2:85753481-85753500 Msa0433360:intron 15.0%
!!! TGATTATGTTTCTTTTATTT+TGG - chr3_2:85754276-85754295 Msa0433360:intron 15.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr3_2:85749735-85749754 Msa0433360:three_prime_UTR 20.0%
!! TAATAACAACAATAAACCTA+TGG + chr3_2:85750140-85750159 None:intergenic 20.0%
!!! TCTATTATTTTAATCACAGT+TGG - chr3_2:85750443-85750462 Msa0433360:CDS 20.0%
!! AACATATTAACAATTAGTGA+AGG + chr3_2:85750524-85750543 None:intergenic 20.0%
!! TTTAGAGATATATTTAGATG+GGG - chr3_2:85751249-85751268 Msa0433360:intron 20.0%
!! GAAAAAGTTACATATAAAAC+TGG - chr3_2:85751522-85751541 Msa0433360:intron 20.0%
!! TTATGTACCTATAAAAAACA+CGG - chr3_2:85751647-85751666 Msa0433360:intron 20.0%
!! TATCAAAAAGATATCAAGTT+GGG + chr3_2:85752177-85752196 None:intergenic 20.0%
!! TTATCAAAAAGATATCAAGT+TGG + chr3_2:85752178-85752197 None:intergenic 20.0%
!!! AACTTGATATCTTTTTGATA+AGG - chr3_2:85752177-85752196 Msa0433360:intron 20.0%
!! AATAATAAAATATTGGTGTG+TGG - chr3_2:85752846-85752865 Msa0433360:intron 20.0%
!! GTTTGAATTGAATACAAAAT+AGG - chr3_2:85753082-85753101 Msa0433360:intron 20.0%
!! TCTATTTCACTAAGTAAATA+TGG + chr3_2:85753992-85754011 None:intergenic 20.0%
!! GACAATTGTTTAGAAAAAAT+GGG + chr3_2:85754134-85754153 None:intergenic 20.0%
!! TGACAATTGTTTAGAAAAAA+TGG + chr3_2:85754135-85754154 None:intergenic 20.0%
!! TTGGTATGTAAAATATTAGA+TGG - chr3_2:85754242-85754261 Msa0433360:intron 20.0%
!! TAACATAGAATAGAATGTTT+AGG + chr3_2:85754337-85754356 None:intergenic 20.0%
!! AACATTCTATTCTATGTTAA+AGG - chr3_2:85754338-85754357 Msa0433360:intron 20.0%
!!! ATAATTAATATTGGCTATGA+GGG - chr3_2:85755186-85755205 Msa0433360:intron 20.0%
!!! ATAAAAAAAGAACTTGCTAA+AGG + chr3_2:85755282-85755301 None:intergenic 20.0%
! CATTCATTTAATGATGTATG+TGG - chr3_2:85749760-85749779 Msa0433360:three_prime_UTR 25.0%
! CATTCATTTAATGATGTATG+TGG + chr3_2:85749760-85749779 None:intergenic 25.0%
! AGTGAAATTGATACGAATTA+GGG + chr3_2:85750116-85750135 None:intergenic 25.0%
! TAGTGAAATTGATACGAATT+AGG + chr3_2:85750117-85750136 None:intergenic 25.0%
! ATTTGTTTGTATCAGGAAAA+TGG + chr3_2:85750410-85750429 None:intergenic 25.0%
! GCTTAAAAGACATGAAAATT+TGG - chr3_2:85750472-85750491 Msa0433360:CDS 25.0%
! AAAAATAGAAAGGATAACAG+AGG + chr3_2:85750698-85750717 None:intergenic 25.0%
! TTGTTTAAAAGCCTTTATAC+CGG - chr3_2:85750941-85750960 Msa0433360:intron 25.0%
! GATTCTTAAGATGTAAATCT+TGG - chr3_2:85751114-85751133 Msa0433360:intron 25.0%
! ATACCAGAACATAAGTAAAA+AGG + chr3_2:85751340-85751359 None:intergenic 25.0%
!!! TATATGTAACTTTTTCCTGA+TGG + chr3_2:85751518-85751537 None:intergenic 25.0%
! TACATATAAAACTGGAAACA+AGG - chr3_2:85751530-85751549 Msa0433360:CDS 25.0%
! TTACCATGAAAAGTTATTCA+GGG + chr3_2:85751578-85751597 None:intergenic 25.0%
! TTTACCATGAAAAGTTATTC+AGG + chr3_2:85751579-85751598 None:intergenic 25.0%
! TATGTACCTATAAAAAACAC+GGG - chr3_2:85751648-85751667 Msa0433360:intron 25.0%
!!! CATCTTTTAAAATACAACAG+TGG - chr3_2:85752133-85752152 Msa0433360:intron 25.0%
!! AAATGAAAAAGATAATGGCT+CGG + chr3_2:85752391-85752410 None:intergenic 25.0%
! ACATACAAATTCTACTAAGT+AGG - chr3_2:85752532-85752551 Msa0433360:intron 25.0%
!!! AGCAGTGTTTTTTTTTTCTT+CGG - chr3_2:85752728-85752747 Msa0433360:intron 25.0%
!!! GGAAACCAATGATTTTTTTT+GGG + chr3_2:85753188-85753207 None:intergenic 25.0%
! TGACATTATGAATGACAAAA+TGG - chr3_2:85753407-85753426 Msa0433360:intron 25.0%
! AGTTATATATGATGTTGTCA+TGG - chr3_2:85753648-85753667 Msa0433360:intron 25.0%
! GAAAAATGTTCAAATACACA+TGG + chr3_2:85753675-85753694 None:intergenic 25.0%
!! TGTTGAATATGTTCATTTTG+CGG - chr3_2:85753814-85753833 Msa0433360:CDS 25.0%
! TCTGAGAATTTAAACTAACA+AGG + chr3_2:85754062-85754081 None:intergenic 25.0%
! AATTGTCAAAACATGTATTC+TGG - chr3_2:85754147-85754166 Msa0433360:intron 25.0%
! ATTGTCAAAACATGTATTCT+GGG - chr3_2:85754148-85754167 Msa0433360:intron 25.0%
! AGTTTAATATCTTCCACAAT+TGG + chr3_2:85754206-85754225 None:intergenic 25.0%
! ATTGTGGAAGATATTAAACT+TGG - chr3_2:85754206-85754225 Msa0433360:intron 25.0%
! TTCTATTCTATGTTAAAGGT+TGG - chr3_2:85754342-85754361 Msa0433360:intron 25.0%
! TCTATTCTATGTTAAAGGTT+GGG - chr3_2:85754343-85754362 Msa0433360:intron 25.0%
! AGACTTATAAAGGAACTTTA+TGG - chr3_2:85754487-85754506 Msa0433360:intron 25.0%
! GAACTTTATGGAAATCAAAT+CGG - chr3_2:85754499-85754518 Msa0433360:intron 25.0%
!!! TTGTATTAGATGATTTTGAC+TGG - chr3_2:85754560-85754579 Msa0433360:intron 25.0%
! GGAAAGTGAAAGAAAATAAA+AGG + chr3_2:85754726-85754745 None:intergenic 25.0%
! ATTACAAGGTTTGAAAACAA+CGG + chr3_2:85754757-85754776 None:intergenic 25.0%
! ACTTCTTGATCAATATTACA+AGG + chr3_2:85754771-85754790 None:intergenic 25.0%
! AGGTGAAAACTATATTACTT+CGG - chr3_2:85755009-85755028 Msa0433360:intron 25.0%
!!! AGAGAACTATGTCTTATTTT+CGG - chr3_2:85755042-85755061 Msa0433360:intron 25.0%
! ACTTAAATGAAATTAGACTC+TGG - chr3_2:85755118-85755137 Msa0433360:intron 25.0%
! AGTGTCCTCATAATTAATAT+TGG - chr3_2:85755177-85755196 Msa0433360:intron 25.0%
! CATAGCCAATATTAATTATG+AGG + chr3_2:85755185-85755204 None:intergenic 25.0%
!! CATAATTAATATTGGCTATG+AGG - chr3_2:85755185-85755204 Msa0433360:intron 25.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr3_2:85749837-85749856 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr3_2:85749836-85749855 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG - chr3_2:85749772-85749791 Msa0433360:three_prime_UTR 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr3_2:85749836-85749855 Msa0433360:CDS 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr3_2:85749837-85749856 Msa0433360:CDS 30.0%
AGACATAACTGAGTAAAGTT+TGG - chr3_2:85749937-85749956 Msa0433360:intron 30.0%
GAGAAAGTTACCTAGAAATA+CGG + chr3_2:85750502-85750521 None:intergenic 30.0%
GATATAAATGAGTAGGTAAC+AGG + chr3_2:85750671-85750690 None:intergenic 30.0%
GAAACTGATATCACTTTGTA+TGG + chr3_2:85750775-85750794 None:intergenic 30.0%
ATTGACATCAAATTTGGACT+TGG - chr3_2:85750808-85750827 Msa0433360:intron 30.0%
!! AGTTGTTTTCTATGCTTTAC+AGG + chr3_2:85750849-85750868 None:intergenic 30.0%
!! TCTAAAACATTTTAACAGCG+TGG - chr3_2:85751092-85751111 Msa0433360:intron 30.0%
AATGAATGAACAGTAGAAGT+TGG + chr3_2:85751182-85751201 None:intergenic 30.0%
!!! CATTTTTCAGGATATCTCTA+AGG + chr3_2:85751206-85751225 None:intergenic 30.0%
! CTTCCTTTTTACTTATGTTC+TGG - chr3_2:85751334-85751353 Msa0433360:intron 30.0%
GATTACTATGAAGAACATCA+AGG + chr3_2:85751367-85751386 None:intergenic 30.0%
GCTTGCATATTTAAGTCATT+TGG - chr3_2:85751607-85751626 Msa0433360:intron 30.0%
!!! ATCTTACCCGTGTTTTTTAT+AGG + chr3_2:85751657-85751676 None:intergenic 30.0%
GCTAAAGAACTAAACACATA+TGG - chr3_2:85751682-85751701 Msa0433360:CDS 30.0%
ATTGAGAATGTCAAAAGAGT+AGG - chr3_2:85751784-85751803 Msa0433360:CDS 30.0%
TCGCTCTACTATAAAGTTTA+GGG + chr3_2:85751832-85751851 None:intergenic 30.0%
TTCGCTCTACTATAAAGTTT+AGG + chr3_2:85751833-85751852 None:intergenic 30.0%
!!! ACAAGGTAAAGTTTTGAGTA+TGG - chr3_2:85751904-85751923 Msa0433360:intron 30.0%
!!! CAAGGTAAAGTTTTGAGTAT+GGG - chr3_2:85751905-85751924 Msa0433360:intron 30.0%
!!! AAGGTAAAGTTTTGAGTATG+GGG - chr3_2:85751906-85751925 Msa0433360:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr3_2:85752025-85752044 None:intergenic 30.0%
! GTCTAAAATATTTGTACCCT+CGG + chr3_2:85752063-85752082 None:intergenic 30.0%
GAGAGTTGAGAATACATAAA+TGG - chr3_2:85752480-85752499 Msa0433360:intron 30.0%
CATAAATGGTAAGTGAGATA+TGG - chr3_2:85752494-85752513 Msa0433360:intron 30.0%
ACATACAAATCATAGCTTGA+AGG - chr3_2:85752602-85752621 Msa0433360:intron 30.0%
TACTTACAATATGAGACTTG+AGG + chr3_2:85752648-85752667 None:intergenic 30.0%
CTTGGATCGTCAAATTTATT+TGG + chr3_2:85752814-85752833 None:intergenic 30.0%
ATTATTTCCTTAACACTGCT+TGG + chr3_2:85752832-85752851 None:intergenic 30.0%
TAGATTTAATAGGCATCCTA+TGG - chr3_2:85752913-85752932 Msa0433360:intron 30.0%
! TGATTTTTACCTCTAGCTAT+TGG + chr3_2:85753014-85753033 None:intergenic 30.0%
!! GAATACAAAATAGGTACTGA+TGG - chr3_2:85753091-85753110 Msa0433360:intron 30.0%
!!! ACCAATGATTTTTTTTGGGA+GGG + chr3_2:85753184-85753203 None:intergenic 30.0%
!!! AACCAATGATTTTTTTTGGG+AGG + chr3_2:85753185-85753204 None:intergenic 30.0%
!!! CGGAAACCAATGATTTTTTT+TGG + chr3_2:85753189-85753208 None:intergenic 30.0%
CATTATGAATGACAAAATGG+AGG - chr3_2:85753410-85753429 Msa0433360:intron 30.0%
AGATATAATCGTCAGCAAAT+GGG + chr3_2:85753467-85753486 None:intergenic 30.0%
AAGATATAATCGTCAGCAAA+TGG + chr3_2:85753468-85753487 None:intergenic 30.0%
! TCATTTTCTGTTTCACGTAT+TGG + chr3_2:85753598-85753617 None:intergenic 30.0%
!! AACTGATTTTACCATTGCAT+TGG + chr3_2:85753632-85753651 None:intergenic 30.0%
!! TTTCTAAGCCTTGTTTCTAT+TGG - chr3_2:85753691-85753710 Msa0433360:intron 30.0%
AATGCAAACCAATAGAAACA+AGG + chr3_2:85753702-85753721 None:intergenic 30.0%
CAGAAATTCATTGATCATGT+TGG - chr3_2:85753722-85753741 Msa0433360:intron 30.0%
! TCTCTAAAGATTACATGCAT+AGG + chr3_2:85753793-85753812 None:intergenic 30.0%
! TTTTGCGGAATACTGATATT+AGG - chr3_2:85753829-85753848 Msa0433360:CDS 30.0%
CATGTTAAAGCTAGTATCTT+TGG - chr3_2:85753950-85753969 Msa0433360:intron 30.0%
AACACTATCTACTGATAAGT+CGG - chr3_2:85754081-85754100 Msa0433360:intron 30.0%
!! AGAATGTTTAGGCTTTGTTT+GGG + chr3_2:85754326-85754345 None:intergenic 30.0%
!! TAGAATGTTTAGGCTTTGTT+TGG + chr3_2:85754327-85754346 None:intergenic 30.0%
CTATTCTATGTTAAAGGTTG+GGG - chr3_2:85754344-85754363 Msa0433360:intron 30.0%
TACAAGCATACATGAAAAGA+GGG + chr3_2:85754393-85754412 None:intergenic 30.0%
TTACAAGCATACATGAAAAG+AGG + chr3_2:85754394-85754413 None:intergenic 30.0%
TTGAAAACAACGGAAAATGT+AGG + chr3_2:85754747-85754766 None:intergenic 30.0%
GTAGAATTTATCTTCGACAT+TGG + chr3_2:85754887-85754906 None:intergenic 30.0%
! TACTCCAATTTTCAACATGA+TGG - chr3_2:85754904-85754923 Msa0433360:intron 30.0%
TCTTCCATCATGTTGAAAAT+TGG + chr3_2:85754911-85754930 None:intergenic 30.0%
!! ATTTTCAACATGATGGAAGA+TGG - chr3_2:85754911-85754930 Msa0433360:intron 30.0%
! GTAATATAGTTTTCACCTTC+TGG + chr3_2:85755007-85755026 None:intergenic 30.0%
AAGTCTGATATGTGTCTTTA+TGG - chr3_2:85755341-85755360 Msa0433360:five_prime_UTR 30.0%
TATATAGTACCTAGCGAAAT+TGG - chr3_2:85755575-85755594 Msa0433360:intron 30.0%
GAAATTGGTTATATAGGTTG+AGG - chr3_2:85755590-85755609 Msa0433360:intron 30.0%
CAGAGTGAAAGGAATTACTT+CGG + chr3_2:85750023-85750042 None:intergenic 35.0%
AAGAGAAGAGAAGAGAAGAA+GGG + chr3_2:85750071-85750090 None:intergenic 35.0%
CGTATCAATTTCACTACCAT+AGG - chr3_2:85750121-85750140 Msa0433360:intron 35.0%
AGTTTGAACAATATGCTGGA+CGG - chr3_2:85750191-85750210 Msa0433360:intron 35.0%
AATTAACAGGGATTCTGACA+AGG - chr3_2:85750581-85750600 Msa0433360:intron 35.0%
AGGAGAGGATATAAATGAGT+AGG + chr3_2:85750678-85750697 None:intergenic 35.0%
TTCAATTCTTGCCGGTATAA+AGG + chr3_2:85750955-85750974 None:intergenic 35.0%
!!! GAGGTTTAGAAGCATTTTTC+AGG + chr3_2:85751218-85751237 None:intergenic 35.0%
TATATTTAGATGGGGAACAG+TGG - chr3_2:85751257-85751276 Msa0433360:intron 35.0%
TGACAAGATCACAGTTGAAT+GGG + chr3_2:85751438-85751457 None:intergenic 35.0%
! CATCCCTGAATAACTTTTCA+TGG - chr3_2:85751572-85751591 Msa0433360:intron 35.0%
ATGTCAAAAGAGTAGGAGAT+AGG - chr3_2:85751791-85751810 Msa0433360:intron 35.0%
AAGAGTAGGAGATAGGATAT+TGG - chr3_2:85751798-85751817 Msa0433360:intron 35.0%
AGAGTAGGAGATAGGATATT+GGG - chr3_2:85751799-85751818 Msa0433360:intron 35.0%
CGCTCTACTATAAAGTTTAG+GGG + chr3_2:85751831-85751850 None:intergenic 35.0%
TGTGATGTTACCAATGCATA+TGG - chr3_2:85751858-85751877 Msa0433360:intron 35.0%
!!! AGGTAAAGTTTTGAGTATGG+GGG - chr3_2:85751907-85751926 Msa0433360:intron 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG + chr3_2:85751955-85751974 None:intergenic 35.0%
TGTTCTATCAAAAACCAACG+AGG - chr3_2:85752028-85752047 Msa0433360:intron 35.0%
TAGGTAACACTAAAAACGAG+AGG - chr3_2:85752108-85752127 Msa0433360:intron 35.0%
!! AAGATATCAAGTTGGGACTT+GGG + chr3_2:85752170-85752189 None:intergenic 35.0%
!! AAAGATATCAAGTTGGGACT+TGG + chr3_2:85752171-85752190 None:intergenic 35.0%
AATAGTCAAGTCAGAAATCC+TGG - chr3_2:85752308-85752327 Msa0433360:intron 35.0%
ATAGTCAAGTCAGAAATCCT+GGG - chr3_2:85752309-85752328 Msa0433360:intron 35.0%
AAATCCTGGGATAAGATGAT+GGG - chr3_2:85752322-85752341 Msa0433360:intron 35.0%
TTTGTGCACACTAGAGTTAT+GGG + chr3_2:85752359-85752378 None:intergenic 35.0%
! TTTTGTGCACACTAGAGTTA+TGG + chr3_2:85752360-85752379 None:intergenic 35.0%
ATAACTCTAGTGTGCACAAA+AGG - chr3_2:85752359-85752378 Msa0433360:intron 35.0%
TACCTAAATAACATGCACCA+AGG + chr3_2:85752460-85752479 None:intergenic 35.0%
CATAGCTTGAAGGTTGAAAT+TGG - chr3_2:85752612-85752631 Msa0433360:intron 35.0%
!! CTTGTTGTCACTTTGTATGA+TGG + chr3_2:85752679-85752698 None:intergenic 35.0%
ACAAAGTGACAACAAGATAG+AGG - chr3_2:85752683-85752702 Msa0433360:intron 35.0%
CAAAGTGACAACAAGATAGA+GGG - chr3_2:85752684-85752703 Msa0433360:intron 35.0%
TAGAGGGAGATGTAAATTAC+AGG - chr3_2:85752700-85752719 Msa0433360:intron 35.0%
! TGTTGATTGGTATAACCACT+CGG - chr3_2:85752788-85752807 Msa0433360:intron 35.0%
GGACACATGGTAGATTTAAT+AGG - chr3_2:85752903-85752922 Msa0433360:intron 35.0%
!! GTTAACAAAATGGTGGATAC+TGG - chr3_2:85752983-85753002 Msa0433360:intron 35.0%
! CTAAATCTCACTTGATGGTT+TGG + chr3_2:85753051-85753070 None:intergenic 35.0%
AACCATCAAGTGAGATTTAG+AGG - chr3_2:85753051-85753070 Msa0433360:intron 35.0%
TACCTCTAAATCTCACTTGA+TGG + chr3_2:85753056-85753075 None:intergenic 35.0%
TGAACCCACTTAATGGAATA+AGG - chr3_2:85753134-85753153 Msa0433360:intron 35.0%
!! CAAGCCTTATTCCATTAAGT+GGG + chr3_2:85753141-85753160 None:intergenic 35.0%
!!! CCAATGATTTTTTTTGGGAG+GGG + chr3_2:85753183-85753202 None:intergenic 35.0%
! AGTATAGCATTGAACGTGTA+CGG + chr3_2:85753209-85753228 None:intergenic 35.0%
TACACGTTCAATGCTATACT+TGG - chr3_2:85753209-85753228 Msa0433360:intron 35.0%
!! CAGATAATTTGCTGTTTGGA+AGG - chr3_2:85753298-85753317 Msa0433360:intron 35.0%
! GACATCTTTTGCTGGTAATT+TGG - chr3_2:85753345-85753364 Msa0433360:intron 35.0%
! TCACGTATTGGCAAGAAAAA+TGG + chr3_2:85753586-85753605 None:intergenic 35.0%
TCTTCTTTCATCCAATGCAA+TGG - chr3_2:85753618-85753637 Msa0433360:intron 35.0%
TTAGGTCATCATGATCCTTA+TGG - chr3_2:85753847-85753866 Msa0433360:intron 35.0%
ATGCAACATACATGTCCATA+AGG + chr3_2:85753865-85753884 None:intergenic 35.0%
ATGGACATGTATGTTGCATA+CGG - chr3_2:85753866-85753885 Msa0433360:intron 35.0%
CACTAAGTAAATATGGCTAC+AGG + chr3_2:85753985-85754004 None:intergenic 35.0%
ACTAACAAGGATATGAGTTG+TGG + chr3_2:85754049-85754068 None:intergenic 35.0%
! CCACAATTGGTGTTCTTAAA+TGG + chr3_2:85754193-85754212 None:intergenic 35.0%
CCATTTAAGAACACCAATTG+TGG - chr3_2:85754190-85754209 Msa0433360:intron 35.0%
!! ACTTGGTGTCTTAGTTATCT+TGG - chr3_2:85754223-85754242 Msa0433360:intron 35.0%
ACAAACTCGATCATGTGATA+AGG + chr3_2:85754544-85754563 None:intergenic 35.0%
!!! AGATGATTTTGACTGGTTAG+TGG - chr3_2:85754567-85754586 Msa0433360:intron 35.0%
!!! GATGATTTTGACTGGTTAGT+GGG - chr3_2:85754568-85754587 Msa0433360:intron 35.0%
AGGGGGAAGAAAATTTGAAA+AGG + chr3_2:85754636-85754655 None:intergenic 35.0%
TCCCGTGTTAACATTTGAAA+GGG + chr3_2:85754655-85754674 None:intergenic 35.0%
TTCCCGTGTTAACATTTGAA+AGG + chr3_2:85754656-85754675 None:intergenic 35.0%
ATGTTAACACGGGAAATCAT+TGG - chr3_2:85754661-85754680 Msa0433360:CDS 35.0%
AAATGAGATCTGTGTATCGA+AGG + chr3_2:85754829-85754848 None:intergenic 35.0%
TCGATACACAGATCTCATTT+CGG - chr3_2:85754829-85754848 Msa0433360:intron 35.0%
! AGCATTTGCTGAAAAGTGAA+AGG + chr3_2:85755153-85755172 None:intergenic 35.0%
TATCAGACTTAAGTGTGCAT+GGG + chr3_2:85755331-85755350 None:intergenic 35.0%
ATATCAGACTTAAGTGTGCA+TGG + chr3_2:85755332-85755351 None:intergenic 35.0%
! AGAGCGAGATAACTTTGAAA+TGG + chr3_2:85755369-85755388 None:intergenic 35.0%
! AGAATCTAAGACTGCAGAAA+GGG + chr3_2:85755496-85755515 None:intergenic 35.0%
GCTAGGTACTATATAACTTC+TGG + chr3_2:85755570-85755589 None:intergenic 35.0%
CCTATATAACCAATTTCGCT+AGG + chr3_2:85755587-85755606 None:intergenic 35.0%
CCTAGCGAAATTGGTTATAT+AGG - chr3_2:85755584-85755603 Msa0433360:intron 35.0%
TATTCCTTCAATATCCTCTC+TGG - chr3_2:85755661-85755680 Msa0433360:intron 35.0%
TCTTGTACCATTTGTACAAC+AGG - chr3_2:85755689-85755708 Msa0433360:intron 35.0%
CTTGTACCATTTGTACAACA+GGG - chr3_2:85755690-85755709 Msa0433360:intron 35.0%
ATGTATCCCTGTTGTACAAA+TGG + chr3_2:85755699-85755718 None:intergenic 35.0%
CAAGACTCGATGATTAACGA+TGG + chr3_2:85749550-85749569 None:intergenic 40.0%
TCTTCTATGTCACTGAGTGT+TGG + chr3_2:85749912-85749931 None:intergenic 40.0%
GAAGAGAAGAGAAGAGAAGA+AGG + chr3_2:85750072-85750091 None:intergenic 40.0%
CCAGCATATTGTTCAAACTG+CGG + chr3_2:85750190-85750209 None:intergenic 40.0%
ATTTGGCTGACCGTATTTCT+AGG - chr3_2:85750489-85750508 Msa0433360:intron 40.0%
TAGAAAGGATAACAGAGGAG+AGG + chr3_2:85750693-85750712 None:intergenic 40.0%
! CTTCAGTGCCTTGTGTTATT+TGG - chr3_2:85750882-85750901 Msa0433360:intron 40.0%
AGGCTACACCAAATAACACA+AGG + chr3_2:85750893-85750912 None:intergenic 40.0%
!! TTGTGTTATTTGGTGTAGCC+TGG - chr3_2:85750892-85750911 Msa0433360:intron 40.0%
AACCAATAGATGACTAAGCC+AGG + chr3_2:85750913-85750932 None:intergenic 40.0%
TATACCGGCAAGAATTGAAC+TGG - chr3_2:85750956-85750975 Msa0433360:intron 40.0%
! ACTTGCTACAATAAGAGAGC+AGG - chr3_2:85751291-85751310 Msa0433360:intron 40.0%
CTACAATAAGAGAGCAGGTA+TGG - chr3_2:85751296-85751315 Msa0433360:intron 40.0%
CTGACAAGATCACAGTTGAA+TGG + chr3_2:85751439-85751458 None:intergenic 40.0%
CATTCAACTGTGATCTTGTC+AGG - chr3_2:85751437-85751456 Msa0433360:intron 40.0%
TGACGTATTAACAAGCCATC+AGG - chr3_2:85751500-85751519 Msa0433360:intron 40.0%
ACCAATGCATATGGACAAGT+AGG - chr3_2:85751867-85751886 Msa0433360:intron 40.0%
CCAATGCATATGGACAAGTA+GGG - chr3_2:85751868-85751887 Msa0433360:intron 40.0%
AGGGAATGAAGAGCAATACA+AGG - chr3_2:85751887-85751906 Msa0433360:intron 40.0%
AACGAGGATATAAACACCGA+GGG - chr3_2:85752044-85752063 Msa0433360:intron 40.0%
TCCATAACCAGTACTTTGCT+GGG + chr3_2:85752260-85752279 None:intergenic 40.0%
GAAATCCTGGGATAAGATGA+TGG - chr3_2:85752321-85752340 Msa0433360:intron 40.0%
AAAACCCATCATCTTATCCC+AGG + chr3_2:85752329-85752348 None:intergenic 40.0%
TTGTGCACACTAGAGTTATG+GGG + chr3_2:85752358-85752377 None:intergenic 40.0%
! TGCCTTGGTGCATGTTATTT+AGG - chr3_2:85752455-85752474 Msa0433360:intron 40.0%
GGACTGTAAGAGACAACAAT+TGG - chr3_2:85752553-85752572 Msa0433360:intron 40.0%
GTCAAATTTATTTGGCCGAG+TGG + chr3_2:85752806-85752825 None:intergenic 40.0%
! ACCATTTTGTTAACCCTCCT+TGG + chr3_2:85752977-85752996 None:intergenic 40.0%
AAGGAGGGTTAACAAAATGG+TGG - chr3_2:85752976-85752995 Msa0433360:intron 40.0%
!! ACAAAATGGTGGATACTGGA+TGG - chr3_2:85752987-85753006 Msa0433360:intron 40.0%
ATATCGCTGAACCCACTTAA+TGG - chr3_2:85753127-85753146 Msa0433360:intron 40.0%
!! CCAAGCCTTATTCCATTAAG+TGG + chr3_2:85753142-85753161 None:intergenic 40.0%
CCACTTAATGGAATAAGGCT+TGG - chr3_2:85753139-85753158 Msa0433360:intron 40.0%
CCCCTCCCAAAAAAAATCAT+TGG - chr3_2:85753180-85753199 Msa0433360:intron 40.0%
!! GGAGCAGATAATTTGCTGTT+TGG - chr3_2:85753294-85753313 Msa0433360:intron 40.0%
TGTTTGGAAGGAGCAAGAAT+TGG - chr3_2:85753310-85753329 Msa0433360:intron 40.0%
! CAGTATGAGACATCTTTTGC+TGG - chr3_2:85753337-85753356 Msa0433360:intron 40.0%
ATGAATGACAAAATGGAGGC+TGG - chr3_2:85753414-85753433 Msa0433360:intron 40.0%
AATCGTCAGCAAATGGGAAA+CGG + chr3_2:85753461-85753480 None:intergenic 40.0%
AAAATGGAACTGTGTGCTCA+AGG + chr3_2:85753570-85753589 None:intergenic 40.0%
AGATCTATTGCAAGCATACG+TGG - chr3_2:85753745-85753764 Msa0433360:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+AGG + chr3_2:85754319-85754338 None:intergenic 40.0%
CATGCAGGTCAGACTTATAA+AGG - chr3_2:85754477-85754496 Msa0433360:intron 40.0%
ACTCGATCATGTGATAAGGA+AGG + chr3_2:85754540-85754559 None:intergenic 40.0%
CCGTGTTAACATTTGAAAGG+GGG + chr3_2:85754653-85754672 None:intergenic 40.0%
CCCCCTTTCAAATGTTAACA+CGG - chr3_2:85754650-85754669 Msa0433360:CDS 40.0%
CCCGTGTTAACATTTGAAAG+GGG + chr3_2:85754654-85754673 None:intergenic 40.0%
CCCCTTTCAAATGTTAACAC+GGG - chr3_2:85754651-85754670 Msa0433360:CDS 40.0%
ATTTATCTTCGACATTGGCC+AGG + chr3_2:85754882-85754901 None:intergenic 40.0%
! ATGATGGAAGATGGAATCTC+AGG - chr3_2:85754920-85754939 Msa0433360:intron 40.0%
ACACAATCTCTGCATATGCT+GGG + chr3_2:85755419-85755438 None:intergenic 40.0%
AACACAATCTCTGCATATGC+TGG + chr3_2:85755420-85755439 None:intergenic 40.0%
! TATATCTGCTGAAGTGCTTG+TGG + chr3_2:85755450-85755469 None:intergenic 40.0%
! GAGAATCTAAGACTGCAGAA+AGG + chr3_2:85755497-85755516 None:intergenic 40.0%
GGATATTGAAGGAATAGCGA+GGG + chr3_2:85755657-85755676 None:intergenic 40.0%
AGGATATTGAAGGAATAGCG+AGG + chr3_2:85755658-85755677 None:intergenic 40.0%
CTTGTTGCGAGAGGGATAAT+CGG + chr3_2:85750046-85750065 None:intergenic 45.0%
CCGCAGTTTGAACAATATGC+TGG - chr3_2:85750187-85750206 Msa0433360:intron 45.0%
GCAAGATGATGATAGTCGCT+TGG - chr3_2:85750334-85750353 Msa0433360:CDS 45.0%
AGCCTGGCTTAGTCATCTAT+TGG - chr3_2:85750908-85750927 Msa0433360:intron 45.0%
GTGATCTTGTCAGGTGCATA+TGG - chr3_2:85751446-85751465 Msa0433360:intron 45.0%
ATCTTGTCAGGTGCATATGG+AGG - chr3_2:85751449-85751468 Msa0433360:intron 45.0%
CCCTACTTGTCCATATGCAT+TGG + chr3_2:85751871-85751890 None:intergenic 45.0%
!!! AAGTTTTGAGTATGGGGGTG+TGG - chr3_2:85751912-85751931 Msa0433360:intron 45.0%
!! CTCGGTGTTTATATCCTCGT+TGG + chr3_2:85752045-85752064 None:intergenic 45.0%
CAACGAGGATATAAACACCG+AGG - chr3_2:85752043-85752062 Msa0433360:intron 45.0%
!! ACCCAGCAAAGTACTGGTTA+TGG - chr3_2:85752256-85752275 Msa0433360:intron 45.0%
GTCCATAACCAGTACTTTGC+TGG + chr3_2:85752261-85752280 None:intergenic 45.0%
GAATTGATGAGACACTGCCT+TGG - chr3_2:85752440-85752459 Msa0433360:intron 45.0%
GAATCGAACAACCATCAGCT+TGG - chr3_2:85752765-85752784 Msa0433360:intron 45.0%
!! ACCATCAGCTTGGTGTTGAT+TGG - chr3_2:85752775-85752794 Msa0433360:intron 45.0%
ACCAATCAACACCAAGCTGA+TGG + chr3_2:85752779-85752798 None:intergenic 45.0%
TGACGATCCAAGCAGTGTTA+AGG - chr3_2:85752822-85752841 Msa0433360:intron 45.0%
CTATGGCAGCAGACATTGAT+GGG - chr3_2:85752930-85752949 Msa0433360:intron 45.0%
GCCAAGGAGGGTTAACAAAA+TGG - chr3_2:85752973-85752992 Msa0433360:intron 45.0%
! ATGGAATAAGGCTTGGTTGC+AGG - chr3_2:85753146-85753165 Msa0433360:intron 45.0%
! TGGAATAAGGCTTGGTTGCA+GGG - chr3_2:85753147-85753166 Msa0433360:intron 45.0%
AGGCTGGATCTTTCTCTAGA+TGG - chr3_2:85753430-85753449 Msa0433360:intron 45.0%
TGCAAGCATACGTGGATAGA+CGG - chr3_2:85753753-85753772 Msa0433360:intron 45.0%
TCTATGTTAAAGGTTGGGGC+AGG - chr3_2:85754348-85754367 Msa0433360:intron 45.0%
ACCTGCATGACATTTGTAGG+AGG + chr3_2:85754466-85754485 None:intergenic 45.0%
CTGACCTGCATGACATTTGT+AGG + chr3_2:85754469-85754488 None:intergenic 45.0%
TAGGATAGTCGAACTGATGC+AGG + chr3_2:85754953-85754972 None:intergenic 45.0%
TGGTAGACTCATGGTTCGTA+AGG + chr3_2:85754987-85755006 None:intergenic 45.0%
TTCACCTTCTGGTAGACTCA+TGG + chr3_2:85754996-85755015 None:intergenic 45.0%
ATGTGATCGTGTGTGCAACT+AGG - chr3_2:85755082-85755101 Msa0433360:CDS 45.0%
AGCGAGGGAGCAATATATGT+TGG + chr3_2:85755642-85755661 None:intergenic 45.0%
TCCTTCAATATCCTCTCTGG+TGG - chr3_2:85755664-85755683 Msa0433360:intron 45.0%
ACCACCAGAGAGGATATTGA+AGG + chr3_2:85755668-85755687 None:intergenic 45.0%
!!! AATATCTTTTATTTTATTTT+GGG + chr3_2:85750983-85751002 None:intergenic 5.0%
!!! AAATATCTTTTATTTTATTT+TGG + chr3_2:85750984-85751003 None:intergenic 5.0%
!!! TTTAATATTTTTTATGTATT+TGG - chr3_2:85753272-85753291 Msa0433360:intron 5.0%
!!! TTAATATTTTTTATGTATTT+GGG - chr3_2:85753273-85753292 Msa0433360:intron 5.0%
! ACGGAGGGAGTATGTAGCTA+CGG - chr3_2:85749852-85749871 Msa0433360:CDS 50.0%
CGCGATGCGATTCGTTGAAA+CGG - chr3_2:85749963-85749982 Msa0433360:intron 50.0%
GGGATAATCGGCAGAGTGAA+AGG + chr3_2:85750034-85750053 None:intergenic 50.0%
CGATTATCCCTCTCGCAACA+AGG - chr3_2:85750044-85750063 Msa0433360:intron 50.0%
AGCATTACCACTTCCCCCAT+GGG + chr3_2:85750226-85750245 None:intergenic 50.0%
AAGCATTACCACTTCCCCCA+TGG + chr3_2:85750227-85750246 None:intergenic 50.0%
GCACGAGCTTCTCAAACACA+AGG - chr3_2:85750639-85750658 Msa0433360:intron 50.0%
GGGTCCAGTTCAATTCTTGC+CGG + chr3_2:85750963-85750982 None:intergenic 50.0%
GATGGGGAACAGTGGAATGA+TGG - chr3_2:85751265-85751284 Msa0433360:intron 50.0%
! CAAGCCTTATCCCGCTAAGT+GGG - chr3_2:85751975-85751994 Msa0433360:CDS 50.0%
! AAGCCTTATCCCGCTAAGTG+GGG - chr3_2:85751976-85751995 Msa0433360:CDS 50.0%
CTAGCTACCCAGCAAAGTAC+TGG - chr3_2:85752250-85752269 Msa0433360:intron 50.0%
GTGTGGAGCAGACATTGATG+TGG - chr3_2:85752863-85752882 Msa0433360:intron 50.0%
!! AGACATTGATGTGGTGCTGC+AGG - chr3_2:85752872-85752891 Msa0433360:intron 50.0%
ATCTACCATGTGTCCACCCT+AGG + chr3_2:85752898-85752917 None:intergenic 50.0%
CCATCAATGTCTGCTGCCAT+AGG + chr3_2:85752932-85752951 None:intergenic 50.0%
CCTATGGCAGCAGACATTGA+TGG - chr3_2:85752929-85752948 Msa0433360:intron 50.0%
CTTGGCAATAATTGCCGCCA+AGG + chr3_2:85752959-85752978 None:intergenic 50.0%
CTTGGCGGCAATTATTGCCA+AGG - chr3_2:85752957-85752976 Msa0433360:intron 50.0%
GCGGCAATTATTGCCAAGGA+GGG - chr3_2:85752961-85752980 Msa0433360:intron 50.0%
CTGGATGGTCCAATAGCTAG+AGG - chr3_2:85753002-85753021 Msa0433360:intron 50.0%
GTCAGCAAATGGGAAACGGA+AGG + chr3_2:85753457-85753476 None:intergenic 50.0%
GCAAGCATACGTGGATAGAC+GGG - chr3_2:85753754-85753773 Msa0433360:intron 50.0%
ATACGTGGATAGACGGGAAC+AGG - chr3_2:85753760-85753779 Msa0433360:CDS 50.0%
TTAAAGGTTGGGGCAGGCAT+AGG - chr3_2:85754354-85754373 Msa0433360:intron 50.0%
GCCTCCTACAAATGTCATGC+AGG - chr3_2:85754462-85754481 Msa0433360:intron 50.0%
! GCTAGCACTGAGATTCGAGT+TGG + chr3_2:85754860-85754879 None:intergenic 50.0%
!! TCGTAAGGCGTTTTCTGCGT+AGG + chr3_2:85754972-85754991 None:intergenic 50.0%
CGAACCATGAGTCTACCAGA+AGG - chr3_2:85754989-85755008 Msa0433360:intron 50.0%
TGGGAGCAGGCTTGTAGAAT+AGG + chr3_2:85755312-85755331 None:intergenic 50.0%
ACTTAAGTGTGCATGGGAGC+AGG + chr3_2:85755325-85755344 None:intergenic 50.0%
CGTTGAAACGGAGAGCGATG+CGG - chr3_2:85749975-85749994 Msa0433360:intron 55.0%
GAAGGGACCTTGTTGCGAGA+GGG + chr3_2:85750054-85750073 None:intergenic 55.0%
AGAAGGGACCTTGTTGCGAG+AGG + chr3_2:85750055-85750074 None:intergenic 55.0%
CCACTTAGCGGGATAAGGCT+TGG + chr3_2:85751977-85751996 None:intergenic 55.0%
! CCAAGCCTTATCCCGCTAAG+TGG - chr3_2:85751974-85751993 Msa0433360:CDS 55.0%
CTTATCCCGCTAAGTGGGGT+CGG - chr3_2:85751980-85751999 Msa0433360:CDS 55.0%
ATGTAGCCGACCCCACTTAG+CGG + chr3_2:85751989-85752008 None:intergenic 55.0%
CTGGGTAGCTAGACTCTCTC+TGG + chr3_2:85752242-85752261 None:intergenic 55.0%
! CAGACATTGATGGGCCTCCT+TGG - chr3_2:85752939-85752958 Msa0433360:intron 55.0%
! ACATTGATGGGCCTCCTTGG+CGG - chr3_2:85752942-85752961 Msa0433360:intron 55.0%
GGCAATAATTGCCGCCAAGG+AGG + chr3_2:85752956-85752975 None:intergenic 55.0%
GGCGGCAATTATTGCCAAGG+AGG - chr3_2:85752960-85752979 Msa0433360:intron 55.0%
! GGGAGTTAGGAGCGTAAGTG+AGG + chr3_2:85754306-85754325 None:intergenic 55.0%
CTCGAATCTCAGTGCTAGCC+TGG - chr3_2:85754861-85754880 Msa0433360:intron 55.0%
TGCAGAAAGGGCGAAGCTCT+AGG + chr3_2:85755484-85755503 None:intergenic 55.0%
GGTACAAGACACCACCAGAG+AGG + chr3_2:85755678-85755697 None:intergenic 55.0%
TGGACGGACGTATGCACCCA+TGG - chr3_2:85750207-85750226 Msa0433360:intron 60.0%
GGACGGACGTATGCACCCAT+GGG - chr3_2:85750208-85750227 Msa0433360:intron 60.0%
GACGGACGTATGCACCCATG+GGG - chr3_2:85750209-85750228 Msa0433360:intron 60.0%
ACGGACGTATGCACCCATGG+GGG - chr3_2:85750210-85750229 Msa0433360:intron 60.0%
GTATGCACCCATGGGGGAAG+TGG - chr3_2:85750216-85750235 Msa0433360:intron 60.0%
! AGTATGGGGGTGTGGCAACG+AGG - chr3_2:85751920-85751939 Msa0433360:intron 60.0%
CGACCCCACTTAGCGGGATA+AGG + chr3_2:85751982-85752001 None:intergenic 60.0%
TGTAGCCGACCCCACTTAGC+GGG + chr3_2:85751988-85752007 None:intergenic 60.0%
GCTAAGTGGGGTCGGCTACA+TGG - chr3_2:85751988-85752007 Msa0433360:intron 60.0%
!! TGATGTGGTGCTGCAGGCCT+AGG - chr3_2:85752878-85752897 Msa0433360:intron 60.0%
!! GATGTGGTGCTGCAGGCCTA+GGG - chr3_2:85752879-85752898 Msa0433360:intron 60.0%
GCAGGCCTAGGGTGGACACA+TGG - chr3_2:85752890-85752909 Msa0433360:intron 65.0%
!! GTGGTGCTGCAGGCCTAGGG+TGG - chr3_2:85752882-85752901 Msa0433360:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85749527 85755780 85749527 ID=Msa0433360;Name=Msa0433360
chr3_2 mRNA 85749527 85755780 85749527 ID=Msa0433360-mRNA-1;Parent=Msa0433360;Name=Msa0433360-mRNA-1;_AED=0.11;_eAED=0.11;_QI=231|1|1|1|0.85|0.8|15|304|358
chr3_2 exon 85749527 85749886 85749527 ID=Msa0433360-mRNA-1:exon:24691;Parent=Msa0433360-mRNA-1
chr3_2 exon 85750297 85750496 85750297 ID=Msa0433360-mRNA-1:exon:24690;Parent=Msa0433360-mRNA-1
chr3_2 exon 85750726 85750823 85750726 ID=Msa0433360-mRNA-1:exon:24689;Parent=Msa0433360-mRNA-1
chr3_2 exon 85751526 85751582 85751526 ID=Msa0433360-mRNA-1:exon:24688;Parent=Msa0433360-mRNA-1
chr3_2 exon 85751668 85751804 85751668 ID=Msa0433360-mRNA-1:exon:24687;Parent=Msa0433360-mRNA-1
chr3_2 exon 85751949 85752006 85751949 ID=Msa0433360-mRNA-1:exon:24686;Parent=Msa0433360-mRNA-1
chr3_2 exon 85753756 85753848 85753756 ID=Msa0433360-mRNA-1:exon:24685;Parent=Msa0433360-mRNA-1
chr3_2 exon 85753995 85754053 85753995 ID=Msa0433360-mRNA-1:exon:24684;Parent=Msa0433360-mRNA-1
chr3_2 exon 85754647 85754717 85754647 ID=Msa0433360-mRNA-1:exon:24683;Parent=Msa0433360-mRNA-1
chr3_2 exon 85754797 85754845 85754797 ID=Msa0433360-mRNA-1:exon:24682;Parent=Msa0433360-mRNA-1
chr3_2 exon 85754933 85754987 85754933 ID=Msa0433360-mRNA-1:exon:24681;Parent=Msa0433360-mRNA-1
chr3_2 exon 85755070 85755114 85755070 ID=Msa0433360-mRNA-1:exon:24680;Parent=Msa0433360-mRNA-1
chr3_2 exon 85755242 85755449 85755242 ID=Msa0433360-mRNA-1:exon:24679;Parent=Msa0433360-mRNA-1
chr3_2 exon 85755594 85755632 85755594 ID=Msa0433360-mRNA-1:exon:24678;Parent=Msa0433360-mRNA-1
chr3_2 exon 85755698 85755780 85755698 ID=Msa0433360-mRNA-1:exon:24677;Parent=Msa0433360-mRNA-1
chr3_2 five_prime_UTR 85755698 85755780 85755698 ID=Msa0433360-mRNA-1:five_prime_utr;Parent=Msa0433360-mRNA-1
chr3_2 five_prime_UTR 85755594 85755632 85755594 ID=Msa0433360-mRNA-1:five_prime_utr;Parent=Msa0433360-mRNA-1
chr3_2 five_prime_UTR 85755341 85755449 85755341 ID=Msa0433360-mRNA-1:five_prime_utr;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85755242 85755340 85755242 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85755070 85755114 85755070 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85754933 85754987 85754933 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85754797 85754845 85754797 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85754647 85754717 85754647 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85753995 85754053 85753995 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85753756 85753848 85753756 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85751949 85752006 85751949 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85751668 85751804 85751668 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85751526 85751582 85751526 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85750726 85750823 85750726 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85750297 85750496 85750297 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 CDS 85749831 85749886 85749831 ID=Msa0433360-mRNA-1:cds;Parent=Msa0433360-mRNA-1
chr3_2 three_prime_UTR 85749527 85749830 85749527 ID=Msa0433360-mRNA-1:three_prime_utr;Parent=Msa0433360-mRNA-1
Gene Sequence

>Msa0433360

ATGCGATTCGTTGAAACGGAGAGCGATGCGGAAGAATCTATGCGAAAGAGACTCCGAAGTAATTCCTTTCACTCTGCCGATTATCCCTCTCGCAACAAGTTTGAACAATATGCTGGACGGACGTATGCACCCATGGGGGAAGTGAATTTTATGCAGCAGCAAGATGATGATAGTCGCTTGGATATTACACGAGCTAAATTTGGAAGTTTGCTTAAAAGACATGAAAATTTGGCTGACCGTATTTCTAGGGATTCTGACAAGGTAATATTTGAGCGTCTACTCAAAGAGTTTGAATCTGCACGAGCTTCTCAAACACAAGAGATATATTTAGATGGGGAACAGTGGAATGATGGTCTACTTGCTACAATAAGAGAGCAGGTGCATATGGAGGCAGAGAGAAAAGCATTGTCTAAAGATGCTGACGTATTAACAAGCCATCAGGAAAAAGTTACATATAAAACTGGAAACAAGATAATTTGCTGTTTGGAAGGAGCAAGAATTGGCATACAGTATGAGACATCTTTTGCTGGTGAAATTTGTGAGTTTTACCACTGCGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAGCACACAGTTCCATTTTTCTTGCCAATACGTGAAACAGAAAATGATCTTCTTTCATCCAATGCAATGAAATTCATTGATCATGTTGGAGATCTATTGCAAGCATACGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAACTTTATGGAAATCAAATCGGAGAGCTGTATCATAGCCTTCCTTATCACATGATCGAGTTTGTATTAGATGATTTTGACTGCAAAGTGACAGTCAGCCTTCGATACACAGATCTCATTTCGGTGCTTCCAACTCGAATCTCAGTGCTAGCCTGGCCAATGTCGAAGATAAATTCTACTCCAATTTTCAACATGATGGAAGATGGAATCTCAGGAAGTCATCCTGCATCAGTTCGACTATCCTACGCAGAAAACGCCTTACGAACCATGAGTCTACCAGAAGCATATGCAGAGATTGTGTTGAATCTTCCACAAGCACTTCAGCAGATATATCATTAA

Protein sequence

>Msa0433360

MRFVETESDAEESMRKRLRSNSFHSADYPSRNKFEQYAGRTYAPMGEVNFMQQQDDDSRLDITRAKFGSLLKRHENLADRISRDSDKVIFERLLKEFESARASQTQEIYLDGEQWNDGLLATIREQVHMEAERKALSKDADVLTSHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCVLESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQVRLIKELYGNQIGELYHSLPYHMIEFVLDDFDCKVTVSLRYTDLISVLPTRISVLAWPMSKINSTPIFNMMEDGISGSHPASVRLSYAENALRTMSLPEAYAEIVLNLPQALQQIYH*