AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190930 MtrunA17_Chr8g0360291 98.450 129 2 0 1 129 1 129 5.05e-92 261
Msa1190930 MtrunA17_Chr2g0316921 71.094 128 37 0 1 128 1 128 5.43e-64 191
Msa1190930 MtrunA17_Chr4g0046851 57.031 128 53 1 1 128 1 126 1.58e-48 151
Msa1190930 MtrunA17_Chr3g0113291 52.344 128 61 0 1 128 24 151 6.38e-46 145
Msa1190930 MtrunA17_Chr7g0242231 57.273 110 47 0 1 110 1 110 1.94e-44 141
Msa1190930 MtrunA17_Chr5g0436971 59.091 110 45 0 1 110 1 110 4.94e-44 140
Msa1190930 MtrunA17_Chr2g0316891 70.588 85 25 0 44 128 42 126 1.57e-39 129
Msa1190930 MtrunA17_Chr1g0188931 45.361 97 53 0 12 108 8 104 1.24e-31 108
Msa1190930 MtrunA17_Chr3g0127211 47.423 97 51 0 12 108 8 104 2.00e-31 107
Msa1190930 MtrunA17_Chr8g0346501 42.857 98 56 0 9 106 5 102 2.03e-26 95.1
Msa1190930 MtrunA17_Chr1g0188951 42.623 61 35 0 48 108 1 61 4.46e-15 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190930 AT5G53940.1 69.531 128 39 0 1 128 1 128 1.02e-61 185
Msa1190930 AT2G40110.1 55.814 129 56 1 1 128 1 129 4.46e-47 148
Msa1190930 AT3G08990.2 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1190930 AT3G08990.1 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1190930 AT3G08990.3 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1190930 AT2G40110.2 64.706 102 36 0 1 102 1 102 1.63e-46 146
Msa1190930 AT3G55890.4 58.095 105 44 0 1 105 1 105 7.58e-42 135
Msa1190930 AT3G55890.1 58.095 105 44 0 1 105 1 105 7.58e-42 135
Msa1190930 AT3G55890.3 59.406 101 41 0 1 101 1 101 2.43e-41 133
Msa1190930 AT3G55890.2 59.406 101 41 0 1 101 1 101 2.43e-41 133
Msa1190930 AT3G11230.1 50.781 128 63 0 1 128 1 128 4.92e-41 133
Msa1190930 AT3G11230.2 50.781 128 63 0 1 128 34 161 1.89e-40 132
Msa1190930 AT3G11230.4 57.843 102 43 0 1 102 1 102 1.62e-39 128
Msa1190930 AT3G11230.3 57.843 102 43 0 1 102 34 135 2.98e-39 129
Msa1190930 AT2G40110.4 61.446 83 32 0 1 83 1 83 2.07e-35 117
Msa1190930 AT2G40110.3 61.446 83 32 0 1 83 1 83 2.07e-35 117
Msa1190930 AT4G27745.2 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1190930 AT4G27745.3 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1190930 AT4G27745.1 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1190930 AT4G27745.4 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1190930 AT4G27740.1 39.130 92 56 0 14 105 10 101 6.77e-23 86.3

Find 41 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAAGAGCGATGCTTTC+AGG 0.190195 8_1:+34247669 Msa1190930:CDS
ACTTTCCCTCTTTGTACTTT+TGG 0.194241 8_1:-34247904 None:intergenic
CTCATAGATGGCTAAGGATA+TGG 0.296863 8_1:+34248335 Msa1190930:three_prime_UTR
ACTTCCTCAAGATTCATAAA+AGG 0.314442 8_1:-34246774 None:intergenic
AGGATATGGAACCGTTGTTT+TGG 0.318599 8_1:+34248349 Msa1190930:three_prime_UTR
TCCACTGAATTCTGTGTTGA+AGG 0.319590 8_1:+34248067 Msa1190930:CDS
GAGCTGGATGGCAGAGTTTA+CGG 0.331875 8_1:+34246850 Msa1190930:CDS
AATGAAATGGCAAAACAAAT+TGG 0.333755 8_1:-34248223 None:intergenic
TGTCGCTGCGGTCAGATAAT+TGG 0.336845 8_1:+34247720 Msa1190930:CDS
GAGTGATACTGAAGATGATT+AGG 0.429995 8_1:+34248102 Msa1190930:CDS
GGAAGGATCGTTGATGAAAT+CGG 0.431542 8_1:+34248040 Msa1190930:CDS
GAGCGGTGACATCAATCAAA+TGG 0.436224 8_1:+34246810 Msa1190930:exon
CTTCTAATACTAAAATGAAA+TGG 0.437312 8_1:-34248236 None:intergenic
ACCGCCAGTTTCCTCATAGA+TGG 0.443843 8_1:+34248323 Msa1190930:three_prime_UTR
TTAGCCATCTATGAGGAAAC+TGG 0.448525 8_1:-34248327 None:intergenic
ATACTTACACATTATTGAAA+AGG 0.455887 8_1:-34247050 None:intergenic
TTTCCACTGATCTCATCTCC+AGG 0.460967 8_1:+34246902 Msa1190930:CDS
GAAAAGCCAAAAGTACAAAG+AGG 0.465104 8_1:+34247898 Msa1190930:CDS
AGGGAAAGTTTGTTCTTGAA+AGG 0.474035 8_1:+34247918 Msa1190930:CDS
TGGAAAGAGCGATGCTTTCA+GGG 0.476055 8_1:+34247670 Msa1190930:CDS
AGCGGTGACATCAATCAAAT+GGG 0.480919 8_1:+34246811 Msa1190930:exon
TGTGTAATTCGTGTATCAAA+AGG 0.485848 8_1:+34248293 Msa1190930:three_prime_UTR
AAGTGAAGAAGAAGAGTGAG+CGG 0.553078 8_1:+34246793 Msa1190930:five_prime_UTR
ATTCGTGTATCAAAAGGAGA+TGG 0.569514 8_1:+34248299 Msa1190930:three_prime_UTR
AAAAGCCAAAAGTACAAAGA+GGG 0.574439 8_1:+34247899 Msa1190930:CDS
TTCCACTGATCTCATCTCCA+GGG 0.580481 8_1:+34246903 Msa1190930:CDS
ATGGGGACGAAATTAGAATA+CGG 0.583822 8_1:+34248393 Msa1190930:three_prime_UTR
GCTGCGGTCAGATAATTGGC+TGG 0.590004 8_1:+34247724 Msa1190930:CDS
CACAGTGTGAACTTCACTAG+TGG 0.591434 8_1:+34247639 Msa1190930:intron
CTTCACTAGTGGAGAAGTGG+TGG 0.595583 8_1:+34247650 Msa1190930:CDS
GAAAGAGATTAAGATGAACC+AGG 0.595956 8_1:-34246743 None:intergenic
TCTCTCATAGGAAACTGTGC+AGG 0.598241 8_1:+34247874 Msa1190930:intron
AGTTTCCTCATAGATGGCTA+AGG 0.601151 8_1:+34248329 Msa1190930:three_prime_UTR
TGAGATCAGTGGAAAGAGCA+AGG 0.604806 8_1:-34246894 None:intergenic
CATATCCTTAGCCATCTATG+AGG 0.622869 8_1:-34248334 None:intergenic
GCCTTCAACACAGAATTCAG+TGG 0.633670 8_1:-34248068 None:intergenic
TACCCTGGAGATGAGATCAG+TGG 0.654916 8_1:-34246905 None:intergenic
GAACTTCACTAGTGGAGAAG+TGG 0.657506 8_1:+34247647 Msa1190930:CDS
TCAAGTCTTGTCCAAAACAA+CGG 0.666689 8_1:-34248360 None:intergenic
GCCATCTATGAGGAAACTGG+CGG 0.672225 8_1:-34248324 None:intergenic
GCGGTGACATCAATCAAATG+GGG 0.714397 8_1:+34246812 Msa1190930:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTGGTTAATT+AGG + chr8_1:34246945-34246964 Msa1190930:intron 15.0%
!! ATACAATCTAATTCTAATAT+CGG - chr8_1:34247534-34247553 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG - chr8_1:34248128-34248147 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG + chr8_1:34248129-34248148 Msa1190930:three_prime_UTR 15.0%
!!! TTCAATTTTTTTGGTTAATT+AGG + chr8_1:34246945-34246964 Msa1190930:intron 15.0%
!! ATACAATCTAATTCTAATAT+CGG - chr8_1:34247534-34247553 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG - chr8_1:34248128-34248147 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG + chr8_1:34248129-34248148 Msa1190930:three_prime_UTR 15.0%
!! TTAACCAAAAAAATTGAAGA+AGG - chr8_1:34246943-34246962 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG - chr8_1:34247053-34247072 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG + chr8_1:34247140-34247159 Msa1190930:intron 20.0%
!! TCAATAATGGTATTATAGTA+AGG + chr8_1:34247153-34247172 Msa1190930:intron 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG - chr8_1:34247209-34247228 None:intergenic 20.0%
!! TTGTATGTTAAGTTATATAC+TGG + chr8_1:34247328-34247347 Msa1190930:intron 20.0%
!! TGTATGTTAAGTTATATACT+GGG + chr8_1:34247329-34247348 Msa1190930:intron 20.0%
!! TAGATTTGTAAAAATATGAG+AGG - chr8_1:34247772-34247791 None:intergenic 20.0%
!! CTTCTAATACTAAAATGAAA+TGG - chr8_1:34248239-34248258 None:intergenic 20.0%
!!! TTATTACGTTTCTTTTTTCT+CGG + chr8_1:34248422-34248441 Msa1190930:three_prime_UTR 20.0%
!! TTAACCAAAAAAATTGAAGA+AGG - chr8_1:34246943-34246962 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG - chr8_1:34247053-34247072 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG + chr8_1:34247140-34247159 Msa1190930:intron 20.0%
!! TCAATAATGGTATTATAGTA+AGG + chr8_1:34247153-34247172 Msa1190930:intron 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG - chr8_1:34247209-34247228 None:intergenic 20.0%
!! TTGTATGTTAAGTTATATAC+TGG + chr8_1:34247328-34247347 Msa1190930:intron 20.0%
!! TGTATGTTAAGTTATATACT+GGG + chr8_1:34247329-34247348 Msa1190930:intron 20.0%
!! TAGATTTGTAAAAATATGAG+AGG - chr8_1:34247772-34247791 None:intergenic 20.0%
!! CTTCTAATACTAAAATGAAA+TGG - chr8_1:34248239-34248258 None:intergenic 20.0%
!!! TGATCCTTCTTCAATTTTTT+TGG + chr8_1:34246936-34246955 Msa1190930:intron 25.0%
! AGAAGAAAAGCAAACAATAA+GGG - chr8_1:34246998-34247017 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG - chr8_1:34247103-34247122 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG - chr8_1:34247454-34247473 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG - chr8_1:34247455-34247474 None:intergenic 25.0%
! TTTGTAAAAATATGAGAGGA+TGG - chr8_1:34247768-34247787 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG - chr8_1:34247990-34248009 None:intergenic 25.0%
! AATGAAATGGCAAAACAAAT+TGG - chr8_1:34248226-34248245 None:intergenic 25.0%
!!! TGATCCTTCTTCAATTTTTT+TGG + chr8_1:34246936-34246955 Msa1190930:intron 25.0%
! AGAAGAAAAGCAAACAATAA+GGG - chr8_1:34246998-34247017 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG - chr8_1:34247103-34247122 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG - chr8_1:34247454-34247473 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG - chr8_1:34247455-34247474 None:intergenic 25.0%
! TTTGTAAAAATATGAGAGGA+TGG - chr8_1:34247768-34247787 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG - chr8_1:34247990-34248009 None:intergenic 25.0%
! AATGAAATGGCAAAACAAAT+TGG - chr8_1:34248226-34248245 None:intergenic 25.0%
! TGTACCTTTTATGAATCTTG+AGG + chr8_1:34246770-34246789 Msa1190930:five_prime_UTR 30.0%
ACTTCCTCAAGATTCATAAA+AGG - chr8_1:34246777-34246796 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG - chr8_1:34246987-34247006 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG - chr8_1:34246999-34247018 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG + chr8_1:34246999-34247018 Msa1190930:intron 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG + chr8_1:34247000-34247019 Msa1190930:intron 30.0%
!! TTGTTACTGATGGATTAACA+AGG - chr8_1:34247093-34247112 None:intergenic 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG - chr8_1:34247846-34247865 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG + chr8_1:34247862-34247881 Msa1190930:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG + chr8_1:34247899-34247918 Msa1190930:CDS 30.0%
!! TCTTTTGTATTTGTTGGATC+AGG + chr8_1:34248135-34248154 Msa1190930:three_prime_UTR 30.0%
! TCTGATTCTGAACATTTTCA+AGG - chr8_1:34248202-34248221 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG + chr8_1:34248293-34248312 Msa1190930:three_prime_UTR 30.0%
! TGTACCTTTTATGAATCTTG+AGG + chr8_1:34246770-34246789 Msa1190930:five_prime_UTR 30.0%
ACTTCCTCAAGATTCATAAA+AGG - chr8_1:34246777-34246796 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG - chr8_1:34246987-34247006 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG - chr8_1:34246999-34247018 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG + chr8_1:34246999-34247018 Msa1190930:intron 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG + chr8_1:34247000-34247019 Msa1190930:intron 30.0%
!! TTGTTACTGATGGATTAACA+AGG - chr8_1:34247093-34247112 None:intergenic 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG - chr8_1:34247846-34247865 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG + chr8_1:34247862-34247881 Msa1190930:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG + chr8_1:34247899-34247918 Msa1190930:CDS 30.0%
!! TCTTTTGTATTTGTTGGATC+AGG + chr8_1:34248135-34248154 Msa1190930:three_prime_UTR 30.0%
! TCTGATTCTGAACATTTTCA+AGG - chr8_1:34248202-34248221 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG + chr8_1:34248293-34248312 Msa1190930:three_prime_UTR 30.0%
! CAGGGATTTTATTGTCATAG+AGG + chr8_1:34247018-34247037 Msa1190930:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG - chr8_1:34247295-34247314 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG + chr8_1:34247343-34247362 Msa1190930:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG + chr8_1:34247372-34247391 Msa1190930:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG + chr8_1:34247376-34247395 Msa1190930:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG + chr8_1:34247708-34247727 Msa1190930:CDS 35.0%
GTAAAAATATGAGAGGATGG+TGG - chr8_1:34247765-34247784 None:intergenic 35.0%
TATCTGCAAACTAGTGTTGT+AGG + chr8_1:34247792-34247811 Msa1190930:intron 35.0%
! GAGAGAGATGCAATTTTAGA+AGG - chr8_1:34247860-34247879 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG + chr8_1:34247898-34247917 Msa1190930:CDS 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG - chr8_1:34247907-34247926 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG + chr8_1:34247918-34247937 Msa1190930:CDS 35.0%
GAGTGATACTGAAGATGATT+AGG + chr8_1:34248102-34248121 Msa1190930:CDS 35.0%
ATTCGTGTATCAAAAGGAGA+TGG + chr8_1:34248299-34248318 Msa1190930:three_prime_UTR 35.0%
! TCAAGTCTTGTCCAAAACAA+CGG - chr8_1:34248363-34248382 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG + chr8_1:34248374-34248393 Msa1190930:three_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG + chr8_1:34248375-34248394 Msa1190930:three_prime_UTR 35.0%
ATGGGGACGAAATTAGAATA+CGG + chr8_1:34248393-34248412 Msa1190930:three_prime_UTR 35.0%
! CAGGGATTTTATTGTCATAG+AGG + chr8_1:34247018-34247037 Msa1190930:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG - chr8_1:34247295-34247314 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG + chr8_1:34247343-34247362 Msa1190930:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG + chr8_1:34247372-34247391 Msa1190930:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG + chr8_1:34247376-34247395 Msa1190930:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG + chr8_1:34247708-34247727 Msa1190930:CDS 35.0%
GTAAAAATATGAGAGGATGG+TGG - chr8_1:34247765-34247784 None:intergenic 35.0%
TATCTGCAAACTAGTGTTGT+AGG + chr8_1:34247792-34247811 Msa1190930:intron 35.0%
! GAGAGAGATGCAATTTTAGA+AGG - chr8_1:34247860-34247879 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG + chr8_1:34247898-34247917 Msa1190930:CDS 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG - chr8_1:34247907-34247926 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG + chr8_1:34247918-34247937 Msa1190930:CDS 35.0%
GAGTGATACTGAAGATGATT+AGG + chr8_1:34248102-34248121 Msa1190930:CDS 35.0%
ATTCGTGTATCAAAAGGAGA+TGG + chr8_1:34248299-34248318 Msa1190930:three_prime_UTR 35.0%
! TCAAGTCTTGTCCAAAACAA+CGG - chr8_1:34248363-34248382 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG + chr8_1:34248374-34248393 Msa1190930:three_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG + chr8_1:34248375-34248394 Msa1190930:three_prime_UTR 35.0%
ATGGGGACGAAATTAGAATA+CGG + chr8_1:34248393-34248412 Msa1190930:three_prime_UTR 35.0%
AAGTGAAGAAGAAGAGTGAG+CGG + chr8_1:34246793-34246812 Msa1190930:five_prime_UTR 40.0%
AGCGGTGACATCAATCAAAT+GGG + chr8_1:34246811-34246830 Msa1190930:exon 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG + chr8_1:34246834-34246853 Msa1190930:CDS 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG + chr8_1:34246838-34246857 Msa1190930:CDS 40.0%
AGGATCATGATATGATACCC+TGG - chr8_1:34246923-34246942 None:intergenic 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG + chr8_1:34247226-34247245 Msa1190930:intron 40.0%
CTAATACCAAACTAATGCCG+AGG + chr8_1:34247275-34247294 Msa1190930:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG + chr8_1:34247375-34247394 Msa1190930:intron 40.0%
ACAAAACTCCCACATACGTA+AGG - chr8_1:34247415-34247434 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG + chr8_1:34247419-34247438 Msa1190930:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG + chr8_1:34247609-34247628 Msa1190930:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG + chr8_1:34248019-34248038 Msa1190930:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG + chr8_1:34248023-34248042 Msa1190930:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG - chr8_1:34248031-34248050 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG + chr8_1:34248040-34248059 Msa1190930:CDS 40.0%
TCCACTGAATTCTGTGTTGA+AGG + chr8_1:34248067-34248086 Msa1190930:CDS 40.0%
TTAGCCATCTATGAGGAAAC+TGG - chr8_1:34248330-34248349 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG + chr8_1:34248329-34248348 Msa1190930:three_prime_UTR 40.0%
CATATCCTTAGCCATCTATG+AGG - chr8_1:34248337-34248356 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG + chr8_1:34248335-34248354 Msa1190930:three_prime_UTR 40.0%
! AGGATATGGAACCGTTGTTT+TGG + chr8_1:34248349-34248368 Msa1190930:three_prime_UTR 40.0%
! GACTTGACTCTTTTCACATG+GGG + chr8_1:34248376-34248395 Msa1190930:three_prime_UTR 40.0%
AAGTGAAGAAGAAGAGTGAG+CGG + chr8_1:34246793-34246812 Msa1190930:five_prime_UTR 40.0%
AGCGGTGACATCAATCAAAT+GGG + chr8_1:34246811-34246830 Msa1190930:exon 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG + chr8_1:34246834-34246853 Msa1190930:CDS 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG + chr8_1:34246838-34246857 Msa1190930:CDS 40.0%
AGGATCATGATATGATACCC+TGG - chr8_1:34246923-34246942 None:intergenic 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG + chr8_1:34247226-34247245 Msa1190930:intron 40.0%
CTAATACCAAACTAATGCCG+AGG + chr8_1:34247275-34247294 Msa1190930:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG + chr8_1:34247375-34247394 Msa1190930:intron 40.0%
ACAAAACTCCCACATACGTA+AGG - chr8_1:34247415-34247434 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG + chr8_1:34247419-34247438 Msa1190930:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG + chr8_1:34247609-34247628 Msa1190930:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG + chr8_1:34248019-34248038 Msa1190930:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG + chr8_1:34248023-34248042 Msa1190930:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG - chr8_1:34248031-34248050 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG + chr8_1:34248040-34248059 Msa1190930:CDS 40.0%
TCCACTGAATTCTGTGTTGA+AGG + chr8_1:34248067-34248086 Msa1190930:CDS 40.0%
TTAGCCATCTATGAGGAAAC+TGG - chr8_1:34248330-34248349 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG + chr8_1:34248329-34248348 Msa1190930:three_prime_UTR 40.0%
CATATCCTTAGCCATCTATG+AGG - chr8_1:34248337-34248356 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG + chr8_1:34248335-34248354 Msa1190930:three_prime_UTR 40.0%
! AGGATATGGAACCGTTGTTT+TGG + chr8_1:34248349-34248368 Msa1190930:three_prime_UTR 40.0%
! GACTTGACTCTTTTCACATG+GGG + chr8_1:34248376-34248395 Msa1190930:three_prime_UTR 40.0%
GAGCGGTGACATCAATCAAA+TGG + chr8_1:34246810-34246829 Msa1190930:exon 45.0%
GCGGTGACATCAATCAAATG+GGG + chr8_1:34246812-34246831 Msa1190930:exon 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG - chr8_1:34246884-34246903 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG - chr8_1:34246897-34246916 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG + chr8_1:34246902-34246921 Msa1190930:CDS 45.0%
TTCCACTGATCTCATCTCCA+GGG + chr8_1:34246903-34246922 Msa1190930:CDS 45.0%
GAAATGCCTCGGCATTAGTT+TGG - chr8_1:34247284-34247303 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG + chr8_1:34247364-34247383 Msa1190930:intron 45.0%
CATACGTAAGGTCCTGGAAA+GGG - chr8_1:34247403-34247422 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG - chr8_1:34247404-34247423 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG + chr8_1:34247403-34247422 Msa1190930:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG + chr8_1:34247404-34247423 Msa1190930:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG - chr8_1:34247636-34247655 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG + chr8_1:34247639-34247658 Msa1190930:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG + chr8_1:34247647-34247666 Msa1190930:CDS 45.0%
TGGAAAGAGCGATGCTTTCA+GGG + chr8_1:34247670-34247689 Msa1190930:CDS 45.0%
TCTCTCATAGGAAACTGTGC+AGG + chr8_1:34247874-34247893 Msa1190930:intron 45.0%
GCCTTCAACACAGAATTCAG+TGG - chr8_1:34248071-34248090 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG + chr8_1:34246810-34246829 Msa1190930:exon 45.0%
GCGGTGACATCAATCAAATG+GGG + chr8_1:34246812-34246831 Msa1190930:exon 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG - chr8_1:34246884-34246903 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG - chr8_1:34246897-34246916 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG + chr8_1:34246902-34246921 Msa1190930:CDS 45.0%
TTCCACTGATCTCATCTCCA+GGG + chr8_1:34246903-34246922 Msa1190930:CDS 45.0%
GAAATGCCTCGGCATTAGTT+TGG - chr8_1:34247284-34247303 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG + chr8_1:34247364-34247383 Msa1190930:intron 45.0%
CATACGTAAGGTCCTGGAAA+GGG - chr8_1:34247403-34247422 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG - chr8_1:34247404-34247423 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG + chr8_1:34247403-34247422 Msa1190930:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG + chr8_1:34247404-34247423 Msa1190930:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG - chr8_1:34247636-34247655 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG + chr8_1:34247639-34247658 Msa1190930:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG + chr8_1:34247647-34247666 Msa1190930:CDS 45.0%
TGGAAAGAGCGATGCTTTCA+GGG + chr8_1:34247670-34247689 Msa1190930:CDS 45.0%
TCTCTCATAGGAAACTGTGC+AGG + chr8_1:34247874-34247893 Msa1190930:intron 45.0%
GCCTTCAACACAGAATTCAG+TGG - chr8_1:34248071-34248090 None:intergenic 45.0%
GAGCTGGATGGCAGAGTTTA+CGG + chr8_1:34246850-34246869 Msa1190930:CDS 50.0%
TACCCTGGAGATGAGATCAG+TGG - chr8_1:34246908-34246927 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG + chr8_1:34247423-34247442 Msa1190930:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG + chr8_1:34247650-34247669 Msa1190930:CDS 50.0%
GTGGAAAGAGCGATGCTTTC+AGG + chr8_1:34247669-34247688 Msa1190930:CDS 50.0%
TGTCGCTGCGGTCAGATAAT+TGG + chr8_1:34247720-34247739 Msa1190930:CDS 50.0%
ACCGCCAGTTTCCTCATAGA+TGG + chr8_1:34248323-34248342 Msa1190930:three_prime_UTR 50.0%
GCCATCTATGAGGAAACTGG+CGG - chr8_1:34248327-34248346 None:intergenic 50.0%
GAGCTGGATGGCAGAGTTTA+CGG + chr8_1:34246850-34246869 Msa1190930:CDS 50.0%
TACCCTGGAGATGAGATCAG+TGG - chr8_1:34246908-34246927 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG + chr8_1:34247423-34247442 Msa1190930:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG + chr8_1:34247650-34247669 Msa1190930:CDS 50.0%
GTGGAAAGAGCGATGCTTTC+AGG + chr8_1:34247669-34247688 Msa1190930:CDS 50.0%
TGTCGCTGCGGTCAGATAAT+TGG + chr8_1:34247720-34247739 Msa1190930:CDS 50.0%
ACCGCCAGTTTCCTCATAGA+TGG + chr8_1:34248323-34248342 Msa1190930:three_prime_UTR 50.0%
GCCATCTATGAGGAAACTGG+CGG - chr8_1:34248327-34248346 None:intergenic 50.0%
! TGAATGGTGGGACCCTTTCC+AGG + chr8_1:34247388-34247407 Msa1190930:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG - chr8_1:34247409-34247428 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG + chr8_1:34247424-34247443 Msa1190930:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG + chr8_1:34247724-34247743 Msa1190930:CDS 55.0%
! TGAATGGTGGGACCCTTTCC+AGG + chr8_1:34247388-34247407 Msa1190930:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG - chr8_1:34247409-34247428 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG + chr8_1:34247424-34247443 Msa1190930:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG + chr8_1:34247724-34247743 Msa1190930:CDS 55.0%
ACATTCAGGGCAGTCCCGTC+CGG - chr8_1:34247441-34247460 None:intergenic 60.0%
ACATTCAGGGCAGTCCCGTC+CGG - chr8_1:34247441-34247460 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 34246746 34248442 34246746 ID=Msa1190930;Name=Msa1190930
chr8_1 mRNA 34246746 34248442 34246746 ID=Msa1190930-mRNA-1;Parent=Msa1190930;Name=Msa1190930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=83|1|1|1|1|1|5|319|129
chr8_1 exon 34246746 34246924 34246746 ID=Msa1190930-mRNA-1:exon:11511;Parent=Msa1190930-mRNA-1
chr8_1 exon 34247021 34247064 34247021 ID=Msa1190930-mRNA-1:exon:11512;Parent=Msa1190930-mRNA-1
chr8_1 exon 34247644 34247752 34247644 ID=Msa1190930-mRNA-1:exon:11513;Parent=Msa1190930-mRNA-1
chr8_1 exon 34247884 34247939 34247884 ID=Msa1190930-mRNA-1:exon:11514;Parent=Msa1190930-mRNA-1
chr8_1 exon 34248039 34248442 34248039 ID=Msa1190930-mRNA-1:exon:11515;Parent=Msa1190930-mRNA-1
chr8_1 five_prime_UTR 34246746 34246828 34246746 ID=Msa1190930-mRNA-1:five_prime_utr;Parent=Msa1190930-mRNA-1
chr8_1 CDS 34246829 34246924 34246829 ID=Msa1190930-mRNA-1:cds;Parent=Msa1190930-mRNA-1
chr8_1 CDS 34247021 34247064 34247021 ID=Msa1190930-mRNA-1:cds;Parent=Msa1190930-mRNA-1
chr8_1 CDS 34247644 34247752 34247644 ID=Msa1190930-mRNA-1:cds;Parent=Msa1190930-mRNA-1
chr8_1 CDS 34247884 34247939 34247884 ID=Msa1190930-mRNA-1:cds;Parent=Msa1190930-mRNA-1
chr8_1 CDS 34248039 34248123 34248039 ID=Msa1190930-mRNA-1:cds;Parent=Msa1190930-mRNA-1
chr8_1 three_prime_UTR 34248124 34248442 34248124 ID=Msa1190930-mRNA-1:three_prime_utr;Parent=Msa1190930-mRNA-1
Gene Sequence

>Msa1190930

ATGGGGAGAATTTTTGCAGTTGAGCTGGATGGCAGAGTTTACGGCTGCAAGTCCTGCAAAACTCACCTTGCTCTTTCCACTGATCTCATCTCCAGGGGATTTTATTGTCATAGAGGAAAAGCATACCTTTTCAATAATGTTGTGAACTTCACTAGTGGAGAAGTGGTGGAAAGAGCGATGCTTTCAGGGATGCATACTGTTGCAGATATATTTTGTTGTCGCTGCGGTCAGATAATTGGCTGGAAATACGAAACTGTGCAGGAGAAAAGCCAAAAGTACAAAGAGGGAAAGTTTGTTCTTGAAAGAGGAAGGATCGTTGATGAAATCGGTTTCTCCACTGAATTCTGTGTTGAAGGCTGTGTCAGCATGAGTGATACTGAAGATGATTAG

Protein sequence

>Msa1190930

MGRIFAVELDGRVYGCKSCKTHLALSTDLISRGFYCHRGKAYLFNNVVNFTSGEVVERAMLSGMHTVADIFCCRCGQIIGWKYETVQEKSQKYKEGKFVLERGRIVDEIGFSTEFCVEGCVSMSDTEDD*