Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974930 | XP_003618543.1 | 95.798 | 238 | 9 | 1 | 1 | 238 | 1 | 237 | 3.00e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974930 | G7KKZ0 | 95.798 | 238 | 9 | 1 | 1 | 238 | 1 | 237 | 1.43e-168 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034970 | Msa0974930 | 0.807294 | 5.422565e-50 | -8.615850e-47 |
| Msa0043980 | Msa0974930 | 0.817630 | 2.984833e-52 | -8.615850e-47 |
| Msa0065950 | Msa0974930 | 0.804430 | 2.168414e-49 | -8.615850e-47 |
| Msa0615310 | Msa0974930 | 0.810259 | 1.260026e-50 | -8.615850e-47 |
| Msa0698360 | Msa0974930 | 0.806963 | 6.373614e-50 | -8.615850e-47 |
| Msa0773850 | Msa0974930 | 0.803264 | 3.786820e-49 | -8.615850e-47 |
| Msa0175840 | Msa0974930 | 0.809410 | 1.918061e-50 | -8.615850e-47 |
| Msa0206010 | Msa0974930 | 0.810501 | 1.117036e-50 | -8.615850e-47 |
| Msa0376910 | Msa0974930 | 0.826032 | 3.387858e-54 | -8.615850e-47 |
| Msa0382180 | Msa0974930 | 0.804159 | 2.469536e-49 | -8.615850e-47 |
| Msa0431690 | Msa0974930 | 0.821607 | 3.689760e-53 | -8.615850e-47 |
| Msa0471900 | Msa0974930 | 0.827962 | 1.171025e-54 | -8.615850e-47 |
| Msa0246260 | Msa0974930 | 0.801095 | 1.058490e-48 | -8.615850e-47 |
| Msa0287410 | Msa0974930 | 0.822456 | 2.345993e-53 | -8.615850e-47 |
| Msa0326110 | Msa0974930 | 0.811419 | 7.067619e-51 | -8.615850e-47 |
| Msa0344910 | Msa0974930 | 0.812376 | 4.373353e-51 | -8.615850e-47 |
| Msa0561240 | Msa0974930 | 0.819448 | 1.155016e-52 | -8.615850e-47 |
| Msa0575470 | Msa0974930 | 0.801223 | 9.963844e-49 | -8.615850e-47 |
| Msa0575700 | Msa0974930 | 0.800307 | 1.532731e-48 | -8.615850e-47 |
| Msa0872440 | Msa0974930 | 0.855319 | 6.832220e-62 | -8.615850e-47 |
| Msa0905730 | Msa0974930 | 0.873510 | 1.390666e-67 | -8.615850e-47 |
| Msa0974930 | Msa1216310 | 0.811464 | 6.911677e-51 | -8.615850e-47 |
| Msa0974930 | Msa1292400 | 0.814847 | 1.250387e-51 | -8.615850e-47 |
| Msa0974930 | Msa1312500 | 0.809235 | 2.091367e-50 | -8.615850e-47 |
| Msa0974930 | Msa1397120 | 0.836410 | 9.514233e-57 | -8.615850e-47 |
| Msa0974930 | Msa1403890 | 0.834648 | 2.654745e-56 | -8.615850e-47 |
| Msa0974930 | Msa1407600 | 0.831293 | 1.812550e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974930 | MtrunA17_Chr6g0453601 | 95.798 | 238 | 9 | 1 | 1 | 238 | 1 | 237 | 2.76e-172 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974930 | AT5G39530.1 | 46.073 | 191 | 102 | 1 | 39 | 229 | 43 | 232 | 3.72e-61 | 192 |
| Msa0974930 | AT5G39520.1 | 41.117 | 197 | 114 | 2 | 39 | 235 | 35 | 229 | 1.54e-54 | 175 |
| Msa0974930 | AT5G39530.2 | 44.324 | 185 | 94 | 2 | 39 | 223 | 43 | 218 | 3.92e-54 | 174 |
Find 50 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCTTTCCCTTCCTTTC+TGG | 0.048858 | 6_4:-8466040 | None:intergenic |
| ACCCCTGGTAACTCATAAAA+AGG | 0.262948 | 6_4:-8464942 | None:intergenic |
| CTTAACCTTACATCTACTTT+TGG | 0.275287 | 6_4:-8465655 | None:intergenic |
| GGCTTCCTTTGATCAATATA+TGG | 0.278362 | 6_4:+8465055 | Msa0974930:intron |
| AAGAATTCATTGCAGTTAAT+CGG | 0.278591 | 6_4:-8466652 | None:intergenic |
| ATATTTCATCAATCATATTA+TGG | 0.287527 | 6_4:+8464770 | Msa0974930:exon |
| AAAGCAGTGTTTCCTGAAAA+AGG | 0.293804 | 6_4:+8465098 | Msa0974930:CDS |
| TGATCCATCATTGATTCAAT+TGG | 0.342949 | 6_4:-8466593 | None:intergenic |
| CATCATGTTCATCAGTGATT+AGG | 0.371639 | 6_4:+8464874 | Msa0974930:CDS |
| TATACAATGCTTCATCTTGA+AGG | 0.378322 | 6_4:+8465627 | Msa0974930:CDS |
| CTGTCGAAGTTGTAAACAAA+TGG | 0.407838 | 6_4:-8466546 | None:intergenic |
| TGTATAAGGTATTGAGTCCT+TGG | 0.417418 | 6_4:-8465973 | None:intergenic |
| GACTTCAACTTAGATGTAAG+AGG | 0.434676 | 6_4:+8466007 | Msa0974930:CDS |
| AGAATTCATTGCAGTTAATC+GGG | 0.436486 | 6_4:-8466651 | None:intergenic |
| AACACTGCTTTGACTACTCT+TGG | 0.446906 | 6_4:-8465086 | None:intergenic |
| TCAGCCAATTGAATCAATGA+TGG | 0.448266 | 6_4:+8466589 | Msa0974930:three_prime_UTR |
| CAAGTATTAGTGTGGTTCCT+TGG | 0.454957 | 6_4:+8464793 | Msa0974930:CDS |
| AGGTTAAGAATAAAGTCTAA+TGG | 0.464292 | 6_4:+8465670 | Msa0974930:CDS |
| TTCAACCAAAAGTAGATGTA+AGG | 0.465816 | 6_4:+8465650 | Msa0974930:CDS |
| GTCGTAAGGATCATTGTATA+AGG | 0.478912 | 6_4:-8465987 | None:intergenic |
| CAAATGAAGCAGGAATTTCA+TGG | 0.480806 | 6_4:+8466448 | Msa0974930:CDS |
| AAAGGAAGGGAAAGAGTAGT+TGG | 0.497535 | 6_4:+8466044 | Msa0974930:CDS |
| TTCAAGATGAAGCATTGTAT+AGG | 0.516620 | 6_4:-8465625 | None:intergenic |
| TATTATATATCCAGAAAGGA+AGG | 0.525308 | 6_4:+8466030 | Msa0974930:CDS |
| TCAGGAACAAAAGTCATTGT+TGG | 0.526181 | 6_4:-8466109 | None:intergenic |
| TGTACTAATAATGGTTGCCA+AGG | 0.529607 | 6_4:-8464810 | None:intergenic |
| GCATCTCGTAAGATATGCTC+AGG | 0.537298 | 6_4:-8466127 | None:intergenic |
| CTTACGAGATGCATTAGAGT+TGG | 0.542520 | 6_4:+8466138 | Msa0974930:CDS |
| TATTAGTACAAAAGAAGCAT+AGG | 0.548171 | 6_4:+8464823 | Msa0974930:CDS |
| ACATCTAAGTTGAAGTCGTA+AGG | 0.548661 | 6_4:-8466001 | None:intergenic |
| AATACTTCTATAGCTGAATG+AGG | 0.548861 | 6_4:-8464910 | None:intergenic |
| TTATATGTATACAGGAGGAA+TGG | 0.554629 | 6_4:+8465587 | Msa0974930:intron |
| GAAGTTGTAAACAAATGGAA+TGG | 0.556335 | 6_4:-8466541 | None:intergenic |
| GATGTGGAATCAAATGAAGC+AGG | 0.560904 | 6_4:+8466438 | Msa0974930:CDS |
| AATGGACCACATGTTTAGAC+TGG | 0.571782 | 6_4:-8466523 | None:intergenic |
| AAGATGAAGCATTGTATAGG+AGG | 0.579892 | 6_4:-8465622 | None:intergenic |
| TAGTTGGCTCAAGAATCAAA+TGG | 0.580045 | 6_4:+8466060 | Msa0974930:CDS |
| ATCATCCATATATTGATCAA+AGG | 0.580382 | 6_4:-8465060 | None:intergenic |
| GAGGTATTATATATCCAGAA+AGG | 0.582099 | 6_4:+8466026 | Msa0974930:CDS |
| ATGTGATGAGGAATGTGAGG+TGG | 0.585549 | 6_4:-8465703 | None:intergenic |
| CAGACGAGGTGGGAGCTCCA+AGG | 0.602105 | 6_4:+8465956 | Msa0974930:intron |
| ATTATATATCCAGAAAGGAA+GGG | 0.617916 | 6_4:+8466031 | Msa0974930:CDS |
| TATTATGGCAAGTATTAGTG+TGG | 0.633104 | 6_4:+8464785 | Msa0974930:exon |
| TTAAATCCTATCAGACGAGG+TGG | 0.635432 | 6_4:+8465945 | Msa0974930:intron |
| AAAAGTCCAGTCTAAACATG+TGG | 0.642223 | 6_4:+8466517 | Msa0974930:exon |
| AACAGGTATTCAAAACGATG+TGG | 0.655966 | 6_4:+8466422 | Msa0974930:intron |
| AACTTCGACAGCAATTGCTG+AGG | 0.658485 | 6_4:+8466558 | Msa0974930:three_prime_UTR |
| AAACTCTAAACAGCTCAATG+AGG | 0.660173 | 6_4:+8465121 | Msa0974930:CDS |
| TAAATCCTATCAGACGAGGT+GGG | 0.681527 | 6_4:+8465946 | Msa0974930:intron |
| CTAATGTGATGAGGAATGTG+AGG | 0.705321 | 6_4:-8465706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTCAAAAAAAAAATA+TGG | + | chr6_4:8465377-8465396 | Msa0974930:intron | 10.0% |
| !!! | AAAAATATGGTTTTAAATTA+TGG | + | chr6_4:8465390-8465409 | Msa0974930:intron | 10.0% |
| !!! | TTAATTTTAAGGTAATATAA+AGG | - | chr6_4:8465428-8465447 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCTTAATTTTA+AGG | - | chr6_4:8465439-8465458 | None:intergenic | 10.0% |
| !! | AATTCTTCAAAAAAAAAATA+TGG | + | chr6_4:8465377-8465396 | Msa0974930:intron | 10.0% |
| !!! | AAAAATATGGTTTTAAATTA+TGG | + | chr6_4:8465390-8465409 | Msa0974930:intron | 10.0% |
| !!! | TTAATTTTAAGGTAATATAA+AGG | - | chr6_4:8465428-8465447 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCTTAATTTTA+AGG | - | chr6_4:8465439-8465458 | None:intergenic | 10.0% |
| !! | ATATTTCATCAATCATATTA+TGG | + | chr6_4:8464770-8464789 | Msa0974930:exon | 15.0% |
| !! | AAAATTTATGTTAGAATCAT+TGG | - | chr6_4:8465019-8465038 | None:intergenic | 15.0% |
| !!! | TATAATTTGTTGAAGTAATA+TGG | + | chr6_4:8465349-8465368 | Msa0974930:intron | 15.0% |
| !! | AAATTAAGAAGAAAAAAATG+TGG | + | chr6_4:8465441-8465460 | Msa0974930:intron | 15.0% |
| !! | ATATACAAATATAAGCTATT+TGG | - | chr6_4:8466350-8466369 | None:intergenic | 15.0% |
| !!! | TATATGTTGATAAAATTAAC+AGG | + | chr6_4:8466405-8466424 | Msa0974930:intron | 15.0% |
| !! | ATATTTCATCAATCATATTA+TGG | + | chr6_4:8464770-8464789 | Msa0974930:exon | 15.0% |
| !! | AAAATTTATGTTAGAATCAT+TGG | - | chr6_4:8465019-8465038 | None:intergenic | 15.0% |
| !!! | TATAATTTGTTGAAGTAATA+TGG | + | chr6_4:8465349-8465368 | Msa0974930:intron | 15.0% |
| !! | AAATTAAGAAGAAAAAAATG+TGG | + | chr6_4:8465441-8465460 | Msa0974930:intron | 15.0% |
| !! | ATATACAAATATAAGCTATT+TGG | - | chr6_4:8466350-8466369 | None:intergenic | 15.0% |
| !!! | TATATGTTGATAAAATTAAC+AGG | + | chr6_4:8466405-8466424 | Msa0974930:intron | 15.0% |
| !!! | TATAACAATTTTAGAGGTTT+CGG | - | chr6_4:8465490-8465509 | None:intergenic | 20.0% |
| !!! | TACTCATTAGCTTTAATTAA+GGG | - | chr6_4:8465550-8465569 | None:intergenic | 20.0% |
| !! | ACTATTGTTTATATGTATAC+AGG | + | chr6_4:8465579-8465598 | Msa0974930:intron | 20.0% |
| !!! | GATCATTCTTATTTCATTTT+CGG | + | chr6_4:8465814-8465833 | Msa0974930:intron | 20.0% |
| !! | AACTTATCTAATTTGAACTA+AGG | + | chr6_4:8466221-8466240 | Msa0974930:intron | 20.0% |
| !! | ACTTATCTAATTTGAACTAA+GGG | + | chr6_4:8466222-8466241 | Msa0974930:intron | 20.0% |
| !!! | ACTAGTGTAATTTTTTCTTT+TGG | + | chr6_4:8466753-8466772 | Msa0974930:three_prime_UTR | 20.0% |
| !!! | TATAACAATTTTAGAGGTTT+CGG | - | chr6_4:8465490-8465509 | None:intergenic | 20.0% |
| !!! | TACTCATTAGCTTTAATTAA+GGG | - | chr6_4:8465550-8465569 | None:intergenic | 20.0% |
| !! | ACTATTGTTTATATGTATAC+AGG | + | chr6_4:8465579-8465598 | Msa0974930:intron | 20.0% |
| !!! | GATCATTCTTATTTCATTTT+CGG | + | chr6_4:8465814-8465833 | Msa0974930:intron | 20.0% |
| !! | AACTTATCTAATTTGAACTA+AGG | + | chr6_4:8466221-8466240 | Msa0974930:intron | 20.0% |
| !! | ACTTATCTAATTTGAACTAA+GGG | + | chr6_4:8466222-8466241 | Msa0974930:intron | 20.0% |
| !!! | ACTAGTGTAATTTTTTCTTT+TGG | + | chr6_4:8466753-8466772 | Msa0974930:three_prime_UTR | 20.0% |
| !! | TGCTTCTTTTGTACTAATAA+TGG | - | chr6_4:8464822-8464841 | None:intergenic | 25.0% |
| !! | TATTAGTACAAAAGAAGCAT+AGG | + | chr6_4:8464823-8464842 | Msa0974930:CDS | 25.0% |
| !! | TTATGTTAGAATCATTGGTT+TGG | - | chr6_4:8465014-8465033 | None:intergenic | 25.0% |
| !! | ATTTTTGTGATTTTCTTTGC+AGG | + | chr6_4:8465034-8465053 | Msa0974930:intron | 25.0% |
| ! | ATCATCCATATATTGATCAA+AGG | - | chr6_4:8465063-8465082 | None:intergenic | 25.0% |
| !!! | ACACAATATAAAGGTTTTAG+AGG | - | chr6_4:8465301-8465320 | None:intergenic | 25.0% |
| ! | CTAAAAGTGACACAATATAA+AGG | - | chr6_4:8465310-8465329 | None:intergenic | 25.0% |
| !! | TCGCAATATAACAATTTTAG+AGG | - | chr6_4:8465496-8465515 | None:intergenic | 25.0% |
| ! | AAATTGTTATATTGCGATTG+CGG | + | chr6_4:8465499-8465518 | Msa0974930:intron | 25.0% |
| ! | TTTAATTAAGGGACACAATA+TGG | - | chr6_4:8465539-8465558 | None:intergenic | 25.0% |
| !!! | GTACTCATTAGCTTTAATTA+AGG | - | chr6_4:8465551-8465570 | None:intergenic | 25.0% |
| ! | ATTGTTTATATGTATACAGG+AGG | + | chr6_4:8465582-8465601 | Msa0974930:intron | 25.0% |
| ! | AGGTTAAGAATAAAGTCTAA+TGG | + | chr6_4:8465670-8465689 | Msa0974930:CDS | 25.0% |
| ! | TCACGAATATAATTGATTGA+CGG | + | chr6_4:8465892-8465911 | Msa0974930:intron | 25.0% |
| ! | TATTATATATCCAGAAAGGA+AGG | + | chr6_4:8466030-8466049 | Msa0974930:CDS | 25.0% |
| ! | ATTATATATCCAGAAAGGAA+GGG | + | chr6_4:8466031-8466050 | Msa0974930:CDS | 25.0% |
| !! | CTTACTATATTAGACTTGTT+TGG | + | chr6_4:8466179-8466198 | Msa0974930:intron | 25.0% |
| !! | AAAAGATGACATGTTTGTTA+CGG | - | chr6_4:8466322-8466341 | None:intergenic | 25.0% |
| ! | AAGAATTCATTGCAGTTAAT+CGG | - | chr6_4:8466655-8466674 | None:intergenic | 25.0% |
| !! | TGCTTCTTTTGTACTAATAA+TGG | - | chr6_4:8464822-8464841 | None:intergenic | 25.0% |
| !! | TATTAGTACAAAAGAAGCAT+AGG | + | chr6_4:8464823-8464842 | Msa0974930:CDS | 25.0% |
| !! | TTATGTTAGAATCATTGGTT+TGG | - | chr6_4:8465014-8465033 | None:intergenic | 25.0% |
| !! | ATTTTTGTGATTTTCTTTGC+AGG | + | chr6_4:8465034-8465053 | Msa0974930:intron | 25.0% |
| ! | ATCATCCATATATTGATCAA+AGG | - | chr6_4:8465063-8465082 | None:intergenic | 25.0% |
| !!! | ACACAATATAAAGGTTTTAG+AGG | - | chr6_4:8465301-8465320 | None:intergenic | 25.0% |
| ! | CTAAAAGTGACACAATATAA+AGG | - | chr6_4:8465310-8465329 | None:intergenic | 25.0% |
| !! | TCGCAATATAACAATTTTAG+AGG | - | chr6_4:8465496-8465515 | None:intergenic | 25.0% |
| ! | AAATTGTTATATTGCGATTG+CGG | + | chr6_4:8465499-8465518 | Msa0974930:intron | 25.0% |
| ! | TTTAATTAAGGGACACAATA+TGG | - | chr6_4:8465539-8465558 | None:intergenic | 25.0% |
| !!! | GTACTCATTAGCTTTAATTA+AGG | - | chr6_4:8465551-8465570 | None:intergenic | 25.0% |
| ! | ATTGTTTATATGTATACAGG+AGG | + | chr6_4:8465582-8465601 | Msa0974930:intron | 25.0% |
| ! | AGGTTAAGAATAAAGTCTAA+TGG | + | chr6_4:8465670-8465689 | Msa0974930:CDS | 25.0% |
| ! | TCACGAATATAATTGATTGA+CGG | + | chr6_4:8465892-8465911 | Msa0974930:intron | 25.0% |
| ! | TATTATATATCCAGAAAGGA+AGG | + | chr6_4:8466030-8466049 | Msa0974930:CDS | 25.0% |
| ! | ATTATATATCCAGAAAGGAA+GGG | + | chr6_4:8466031-8466050 | Msa0974930:CDS | 25.0% |
| !! | CTTACTATATTAGACTTGTT+TGG | + | chr6_4:8466179-8466198 | Msa0974930:intron | 25.0% |
| !! | AAAAGATGACATGTTTGTTA+CGG | - | chr6_4:8466322-8466341 | None:intergenic | 25.0% |
| ! | AAGAATTCATTGCAGTTAAT+CGG | - | chr6_4:8466655-8466674 | None:intergenic | 25.0% |
| TATTATGGCAAGTATTAGTG+TGG | + | chr6_4:8464785-8464804 | Msa0974930:exon | 30.0% | |
| AATACTTCTATAGCTGAATG+AGG | - | chr6_4:8464913-8464932 | None:intergenic | 30.0% | |
| ! | TTCCTTTTTATGAGTTACCA+GGG | + | chr6_4:8464940-8464959 | Msa0974930:CDS | 30.0% |
| ! | AAACTTTGATAATATACCCC+TGG | - | chr6_4:8464960-8464979 | None:intergenic | 30.0% |
| GAAGATGAAGATGGTAATTA+AGG | - | chr6_4:8464987-8465006 | None:intergenic | 30.0% | |
| !! | TTAGAATCATTGGTTTGGAT+TGG | - | chr6_4:8465009-8465028 | None:intergenic | 30.0% |
| !! | TGTTTAGAGTTTCCTTTTTC+AGG | - | chr6_4:8465113-8465132 | None:intergenic | 30.0% |
| TTACGTTGCAAACCTTTATT+TGG | + | chr6_4:8465221-8465240 | Msa0974930:intron | 30.0% | |
| !!! | CACTTTTAGAACTATGTGTA+TGG | + | chr6_4:8465321-8465340 | Msa0974930:intron | 30.0% |
| AGAAAAAAATGTGGTCAATG+CGG | + | chr6_4:8465450-8465469 | Msa0974930:intron | 30.0% | |
| TTATATGTATACAGGAGGAA+TGG | + | chr6_4:8465587-8465606 | Msa0974930:intron | 30.0% | |
| !! | TTCAAGATGAAGCATTGTAT+AGG | - | chr6_4:8465628-8465647 | None:intergenic | 30.0% |
| TATACAATGCTTCATCTTGA+AGG | + | chr6_4:8465627-8465646 | Msa0974930:CDS | 30.0% | |
| TTCAACCAAAAGTAGATGTA+AGG | + | chr6_4:8465650-8465669 | Msa0974930:CDS | 30.0% | |
| ! | CTTAACCTTACATCTACTTT+TGG | - | chr6_4:8465658-8465677 | None:intergenic | 30.0% |
| ! | AGAATTTTGCTAATGTGATG+AGG | - | chr6_4:8465718-8465737 | None:intergenic | 30.0% |
| ! | CATTTTGTAAGCACTTTCAT+TGG | + | chr6_4:8465745-8465764 | Msa0974930:intron | 30.0% |
| ! | GAGGTATTATATATCCAGAA+AGG | + | chr6_4:8466026-8466045 | Msa0974930:CDS | 30.0% |
| CTAATTTGAACTAAGGGATA+AGG | + | chr6_4:8466228-8466247 | Msa0974930:intron | 30.0% | |
| ACAATAGTTTAATTCTCGTC+CGG | - | chr6_4:8466276-8466295 | None:intergenic | 30.0% | |
| GAAGTTGTAAACAAATGGAA+TGG | - | chr6_4:8466544-8466563 | None:intergenic | 30.0% | |
| !! | TGATCCATCATTGATTCAAT+TGG | - | chr6_4:8466596-8466615 | None:intergenic | 30.0% |
| AGAATTCATTGCAGTTAATC+GGG | - | chr6_4:8466654-8466673 | None:intergenic | 30.0% | |
| TATTATGGCAAGTATTAGTG+TGG | + | chr6_4:8464785-8464804 | Msa0974930:exon | 30.0% | |
| AATACTTCTATAGCTGAATG+AGG | - | chr6_4:8464913-8464932 | None:intergenic | 30.0% | |
| ! | TTCCTTTTTATGAGTTACCA+GGG | + | chr6_4:8464940-8464959 | Msa0974930:CDS | 30.0% |
| ! | AAACTTTGATAATATACCCC+TGG | - | chr6_4:8464960-8464979 | None:intergenic | 30.0% |
| GAAGATGAAGATGGTAATTA+AGG | - | chr6_4:8464987-8465006 | None:intergenic | 30.0% | |
| !! | TTAGAATCATTGGTTTGGAT+TGG | - | chr6_4:8465009-8465028 | None:intergenic | 30.0% |
| !! | TGTTTAGAGTTTCCTTTTTC+AGG | - | chr6_4:8465113-8465132 | None:intergenic | 30.0% |
| TTACGTTGCAAACCTTTATT+TGG | + | chr6_4:8465221-8465240 | Msa0974930:intron | 30.0% | |
| !!! | CACTTTTAGAACTATGTGTA+TGG | + | chr6_4:8465321-8465340 | Msa0974930:intron | 30.0% |
| AGAAAAAAATGTGGTCAATG+CGG | + | chr6_4:8465450-8465469 | Msa0974930:intron | 30.0% | |
| TTATATGTATACAGGAGGAA+TGG | + | chr6_4:8465587-8465606 | Msa0974930:intron | 30.0% | |
| !! | TTCAAGATGAAGCATTGTAT+AGG | - | chr6_4:8465628-8465647 | None:intergenic | 30.0% |
| TATACAATGCTTCATCTTGA+AGG | + | chr6_4:8465627-8465646 | Msa0974930:CDS | 30.0% | |
| TTCAACCAAAAGTAGATGTA+AGG | + | chr6_4:8465650-8465669 | Msa0974930:CDS | 30.0% | |
| ! | CTTAACCTTACATCTACTTT+TGG | - | chr6_4:8465658-8465677 | None:intergenic | 30.0% |
| ! | AGAATTTTGCTAATGTGATG+AGG | - | chr6_4:8465718-8465737 | None:intergenic | 30.0% |
| ! | CATTTTGTAAGCACTTTCAT+TGG | + | chr6_4:8465745-8465764 | Msa0974930:intron | 30.0% |
| ! | GAGGTATTATATATCCAGAA+AGG | + | chr6_4:8466026-8466045 | Msa0974930:CDS | 30.0% |
| CTAATTTGAACTAAGGGATA+AGG | + | chr6_4:8466228-8466247 | Msa0974930:intron | 30.0% | |
| ACAATAGTTTAATTCTCGTC+CGG | - | chr6_4:8466276-8466295 | None:intergenic | 30.0% | |
| GAAGTTGTAAACAAATGGAA+TGG | - | chr6_4:8466544-8466563 | None:intergenic | 30.0% | |
| !! | TGATCCATCATTGATTCAAT+TGG | - | chr6_4:8466596-8466615 | None:intergenic | 30.0% |
| AGAATTCATTGCAGTTAATC+GGG | - | chr6_4:8466654-8466673 | None:intergenic | 30.0% | |
| TGTACTAATAATGGTTGCCA+AGG | - | chr6_4:8464813-8464832 | None:intergenic | 35.0% | |
| CATCATGTTCATCAGTGATT+AGG | + | chr6_4:8464874-8464893 | Msa0974930:CDS | 35.0% | |
| ! | GTTCCTTTTTATGAGTTACC+AGG | + | chr6_4:8464939-8464958 | Msa0974930:CDS | 35.0% |
| ! | TCCTTTTTATGAGTTACCAG+GGG | + | chr6_4:8464941-8464960 | Msa0974930:CDS | 35.0% |
| ! | TTTGGATTGGAAGATGAAGA+TGG | - | chr6_4:8464996-8465015 | None:intergenic | 35.0% |
| GGCTTCCTTTGATCAATATA+TGG | + | chr6_4:8465055-8465074 | Msa0974930:intron | 35.0% | |
| AAAGCAGTGTTTCCTGAAAA+AGG | + | chr6_4:8465098-8465117 | Msa0974930:CDS | 35.0% | |
| AAACTCTAAACAGCTCAATG+AGG | + | chr6_4:8465121-8465140 | Msa0974930:CDS | 35.0% | |
| !! | AAGATGAAGCATTGTATAGG+AGG | - | chr6_4:8465625-8465644 | None:intergenic | 35.0% |
| TTCGGATAATATGCATCGTT+AGG | + | chr6_4:8465832-8465851 | Msa0974930:intron | 35.0% | |
| TCGGATAATATGCATCGTTA+GGG | + | chr6_4:8465833-8465852 | Msa0974930:intron | 35.0% | |
| CAATTAAATCCTATCAGACG+AGG | + | chr6_4:8465942-8465961 | Msa0974930:intron | 35.0% | |
| !! | TGTATAAGGTATTGAGTCCT+TGG | - | chr6_4:8465976-8465995 | None:intergenic | 35.0% |
| GTCGTAAGGATCATTGTATA+AGG | - | chr6_4:8465990-8466009 | None:intergenic | 35.0% | |
| ! | ACATCTAAGTTGAAGTCGTA+AGG | - | chr6_4:8466004-8466023 | None:intergenic | 35.0% |
| GACTTCAACTTAGATGTAAG+AGG | + | chr6_4:8466007-8466026 | Msa0974930:CDS | 35.0% | |
| ! | TAGTTGGCTCAAGAATCAAA+TGG | + | chr6_4:8466060-8466079 | Msa0974930:CDS | 35.0% |
| TCAGGAACAAAAGTCATTGT+TGG | - | chr6_4:8466112-8466131 | None:intergenic | 35.0% | |
| CAATAGTTTAATTCTCGTCC+GGG | - | chr6_4:8466275-8466294 | None:intergenic | 35.0% | |
| AACAGGTATTCAAAACGATG+TGG | + | chr6_4:8466422-8466441 | Msa0974930:intron | 35.0% | |
| CAAATGAAGCAGGAATTTCA+TGG | + | chr6_4:8466448-8466467 | Msa0974930:CDS | 35.0% | |
| ! | TGTTTAGACTGGACTTTTCT+TGG | - | chr6_4:8466515-8466534 | None:intergenic | 35.0% |
| AAAAGTCCAGTCTAAACATG+TGG | + | chr6_4:8466517-8466536 | Msa0974930:exon | 35.0% | |
| CTGTCGAAGTTGTAAACAAA+TGG | - | chr6_4:8466549-8466568 | None:intergenic | 35.0% | |
| TCAGCCAATTGAATCAATGA+TGG | + | chr6_4:8466589-8466608 | Msa0974930:three_prime_UTR | 35.0% | |
| TGTACTAATAATGGTTGCCA+AGG | - | chr6_4:8464813-8464832 | None:intergenic | 35.0% | |
| CATCATGTTCATCAGTGATT+AGG | + | chr6_4:8464874-8464893 | Msa0974930:CDS | 35.0% | |
| ! | GTTCCTTTTTATGAGTTACC+AGG | + | chr6_4:8464939-8464958 | Msa0974930:CDS | 35.0% |
| ! | TCCTTTTTATGAGTTACCAG+GGG | + | chr6_4:8464941-8464960 | Msa0974930:CDS | 35.0% |
| ! | TTTGGATTGGAAGATGAAGA+TGG | - | chr6_4:8464996-8465015 | None:intergenic | 35.0% |
| GGCTTCCTTTGATCAATATA+TGG | + | chr6_4:8465055-8465074 | Msa0974930:intron | 35.0% | |
| AAAGCAGTGTTTCCTGAAAA+AGG | + | chr6_4:8465098-8465117 | Msa0974930:CDS | 35.0% | |
| AAACTCTAAACAGCTCAATG+AGG | + | chr6_4:8465121-8465140 | Msa0974930:CDS | 35.0% | |
| !! | AAGATGAAGCATTGTATAGG+AGG | - | chr6_4:8465625-8465644 | None:intergenic | 35.0% |
| TTCGGATAATATGCATCGTT+AGG | + | chr6_4:8465832-8465851 | Msa0974930:intron | 35.0% | |
| TCGGATAATATGCATCGTTA+GGG | + | chr6_4:8465833-8465852 | Msa0974930:intron | 35.0% | |
| CAATTAAATCCTATCAGACG+AGG | + | chr6_4:8465942-8465961 | Msa0974930:intron | 35.0% | |
| !! | TGTATAAGGTATTGAGTCCT+TGG | - | chr6_4:8465976-8465995 | None:intergenic | 35.0% |
| GTCGTAAGGATCATTGTATA+AGG | - | chr6_4:8465990-8466009 | None:intergenic | 35.0% | |
| ! | ACATCTAAGTTGAAGTCGTA+AGG | - | chr6_4:8466004-8466023 | None:intergenic | 35.0% |
| GACTTCAACTTAGATGTAAG+AGG | + | chr6_4:8466007-8466026 | Msa0974930:CDS | 35.0% | |
| ! | TAGTTGGCTCAAGAATCAAA+TGG | + | chr6_4:8466060-8466079 | Msa0974930:CDS | 35.0% |
| TCAGGAACAAAAGTCATTGT+TGG | - | chr6_4:8466112-8466131 | None:intergenic | 35.0% | |
| CAATAGTTTAATTCTCGTCC+GGG | - | chr6_4:8466275-8466294 | None:intergenic | 35.0% | |
| AACAGGTATTCAAAACGATG+TGG | + | chr6_4:8466422-8466441 | Msa0974930:intron | 35.0% | |
| CAAATGAAGCAGGAATTTCA+TGG | + | chr6_4:8466448-8466467 | Msa0974930:CDS | 35.0% | |
| ! | TGTTTAGACTGGACTTTTCT+TGG | - | chr6_4:8466515-8466534 | None:intergenic | 35.0% |
| AAAAGTCCAGTCTAAACATG+TGG | + | chr6_4:8466517-8466536 | Msa0974930:exon | 35.0% | |
| CTGTCGAAGTTGTAAACAAA+TGG | - | chr6_4:8466549-8466568 | None:intergenic | 35.0% | |
| TCAGCCAATTGAATCAATGA+TGG | + | chr6_4:8466589-8466608 | Msa0974930:three_prime_UTR | 35.0% | |
| CAAGTATTAGTGTGGTTCCT+TGG | + | chr6_4:8464793-8464812 | Msa0974930:CDS | 40.0% | |
| ACCCCTGGTAACTCATAAAA+AGG | - | chr6_4:8464945-8464964 | None:intergenic | 40.0% | |
| AACACTGCTTTGACTACTCT+TGG | - | chr6_4:8465089-8465108 | None:intergenic | 40.0% | |
| TGCACATTACGGCCAAATAA+AGG | - | chr6_4:8465236-8465255 | None:intergenic | 40.0% | |
| TGTTATATTGCGATTGCGGA+CGG | + | chr6_4:8465503-8465522 | Msa0974930:intron | 40.0% | |
| CTAATGTGATGAGGAATGTG+AGG | - | chr6_4:8465709-8465728 | None:intergenic | 40.0% | |
| TTAAATCCTATCAGACGAGG+TGG | + | chr6_4:8465945-8465964 | Msa0974930:intron | 40.0% | |
| TAAATCCTATCAGACGAGGT+GGG | + | chr6_4:8465946-8465965 | Msa0974930:intron | 40.0% | |
| AAAGGAAGGGAAAGAGTAGT+TGG | + | chr6_4:8466044-8466063 | Msa0974930:CDS | 40.0% | |
| CTTACGAGATGCATTAGAGT+TGG | + | chr6_4:8466138-8466157 | Msa0974930:CDS | 40.0% | |
| ACTAAGGGATAAGGAGTTTG+AGG | + | chr6_4:8466237-8466256 | Msa0974930:intron | 40.0% | |
| GATGTGGAATCAAATGAAGC+AGG | + | chr6_4:8466438-8466457 | Msa0974930:CDS | 40.0% | |
| AATGGACCACATGTTTAGAC+TGG | - | chr6_4:8466526-8466545 | None:intergenic | 40.0% | |
| CAAGTATTAGTGTGGTTCCT+TGG | + | chr6_4:8464793-8464812 | Msa0974930:CDS | 40.0% | |
| ACCCCTGGTAACTCATAAAA+AGG | - | chr6_4:8464945-8464964 | None:intergenic | 40.0% | |
| AACACTGCTTTGACTACTCT+TGG | - | chr6_4:8465089-8465108 | None:intergenic | 40.0% | |
| TGCACATTACGGCCAAATAA+AGG | - | chr6_4:8465236-8465255 | None:intergenic | 40.0% | |
| TGTTATATTGCGATTGCGGA+CGG | + | chr6_4:8465503-8465522 | Msa0974930:intron | 40.0% | |
| CTAATGTGATGAGGAATGTG+AGG | - | chr6_4:8465709-8465728 | None:intergenic | 40.0% | |
| TTAAATCCTATCAGACGAGG+TGG | + | chr6_4:8465945-8465964 | Msa0974930:intron | 40.0% | |
| TAAATCCTATCAGACGAGGT+GGG | + | chr6_4:8465946-8465965 | Msa0974930:intron | 40.0% | |
| AAAGGAAGGGAAAGAGTAGT+TGG | + | chr6_4:8466044-8466063 | Msa0974930:CDS | 40.0% | |
| CTTACGAGATGCATTAGAGT+TGG | + | chr6_4:8466138-8466157 | Msa0974930:CDS | 40.0% | |
| ACTAAGGGATAAGGAGTTTG+AGG | + | chr6_4:8466237-8466256 | Msa0974930:intron | 40.0% | |
| GATGTGGAATCAAATGAAGC+AGG | + | chr6_4:8466438-8466457 | Msa0974930:CDS | 40.0% | |
| AATGGACCACATGTTTAGAC+TGG | - | chr6_4:8466526-8466545 | None:intergenic | 40.0% | |
| ! | GACTCATCGGTTGCACATTA+CGG | - | chr6_4:8465247-8465266 | None:intergenic | 45.0% |
| AACTGCAATCACGGACTCAT+CGG | - | chr6_4:8465260-8465279 | None:intergenic | 45.0% | |
| TGGCATCACAACTGCAATCA+CGG | - | chr6_4:8465269-8465288 | None:intergenic | 45.0% | |
| TTGCAGTTGTGATGCCATTG+TGG | + | chr6_4:8465272-8465291 | Msa0974930:intron | 45.0% | |
| !!! | GGTTTTAGAGGTCTCCACAA+TGG | - | chr6_4:8465289-8465308 | None:intergenic | 45.0% |
| ATGTGATGAGGAATGTGAGG+TGG | - | chr6_4:8465706-8465725 | None:intergenic | 45.0% | |
| CTACTCTTTCCCTTCCTTTC+TGG | - | chr6_4:8466043-8466062 | None:intergenic | 45.0% | |
| GCATCTCGTAAGATATGCTC+AGG | - | chr6_4:8466130-8466149 | None:intergenic | 45.0% | |
| ! | TTGAGGTCTGGTTTCAAACC+CGG | + | chr6_4:8466254-8466273 | Msa0974930:intron | 45.0% |
| AACTTCGACAGCAATTGCTG+AGG | + | chr6_4:8466558-8466577 | Msa0974930:three_prime_UTR | 45.0% | |
| ! | GACTCATCGGTTGCACATTA+CGG | - | chr6_4:8465247-8465266 | None:intergenic | 45.0% |
| AACTGCAATCACGGACTCAT+CGG | - | chr6_4:8465260-8465279 | None:intergenic | 45.0% | |
| TGGCATCACAACTGCAATCA+CGG | - | chr6_4:8465269-8465288 | None:intergenic | 45.0% | |
| TTGCAGTTGTGATGCCATTG+TGG | + | chr6_4:8465272-8465291 | Msa0974930:intron | 45.0% | |
| !!! | GGTTTTAGAGGTCTCCACAA+TGG | - | chr6_4:8465289-8465308 | None:intergenic | 45.0% |
| ATGTGATGAGGAATGTGAGG+TGG | - | chr6_4:8465706-8465725 | None:intergenic | 45.0% | |
| CTACTCTTTCCCTTCCTTTC+TGG | - | chr6_4:8466043-8466062 | None:intergenic | 45.0% | |
| GCATCTCGTAAGATATGCTC+AGG | - | chr6_4:8466130-8466149 | None:intergenic | 45.0% | |
| ! | TTGAGGTCTGGTTTCAAACC+CGG | + | chr6_4:8466254-8466273 | Msa0974930:intron | 45.0% |
| AACTTCGACAGCAATTGCTG+AGG | + | chr6_4:8466558-8466577 | Msa0974930:three_prime_UTR | 45.0% | |
| ! | GGGATAAGGAGTTTGAGGTC+TGG | + | chr6_4:8466242-8466261 | Msa0974930:intron | 50.0% |
| ! | GGGATAAGGAGTTTGAGGTC+TGG | + | chr6_4:8466242-8466261 | Msa0974930:intron | 50.0% |
| GAGCTCCCACCTCGTCTGAT+AGG | - | chr6_4:8465954-8465973 | None:intergenic | 60.0% | |
| GAGCTCCCACCTCGTCTGAT+AGG | - | chr6_4:8465954-8465973 | None:intergenic | 60.0% | |
| CAGACGAGGTGGGAGCTCCA+AGG | + | chr6_4:8465956-8465975 | Msa0974930:intron | 65.0% | |
| CAGACGAGGTGGGAGCTCCA+AGG | + | chr6_4:8465956-8465975 | Msa0974930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 8464768 | 8466776 | 8464768 | ID=Msa0974930;Name=Msa0974930 |
| chr6_4 | mRNA | 8464768 | 8466776 | 8464768 | ID=Msa0974930-mRNA-1;Parent=Msa0974930;Name=Msa0974930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=21|1|1|1|1|1|5|245|238 |
| chr6_4 | exon | 8464768 | 8464962 | 8464768 | ID=Msa0974930-mRNA-1:exon:3077;Parent=Msa0974930-mRNA-1 |
| chr6_4 | exon | 8465056 | 8465142 | 8465056 | ID=Msa0974930-mRNA-1:exon:3078;Parent=Msa0974930-mRNA-1 |
| chr6_4 | exon | 8465601 | 8465750 | 8465601 | ID=Msa0974930-mRNA-1:exon:3079;Parent=Msa0974930-mRNA-1 |
| chr6_4 | exon | 8465959 | 8466159 | 8465959 | ID=Msa0974930-mRNA-1:exon:3080;Parent=Msa0974930-mRNA-1 |
| chr6_4 | exon | 8466427 | 8466776 | 8466427 | ID=Msa0974930-mRNA-1:exon:3081;Parent=Msa0974930-mRNA-1 |
| chr6_4 | five_prime_UTR | 8464768 | 8464788 | 8464768 | ID=Msa0974930-mRNA-1:five_prime_utr;Parent=Msa0974930-mRNA-1 |
| chr6_4 | CDS | 8464789 | 8464962 | 8464789 | ID=Msa0974930-mRNA-1:cds;Parent=Msa0974930-mRNA-1 |
| chr6_4 | CDS | 8465056 | 8465142 | 8465056 | ID=Msa0974930-mRNA-1:cds;Parent=Msa0974930-mRNA-1 |
| chr6_4 | CDS | 8465601 | 8465750 | 8465601 | ID=Msa0974930-mRNA-1:cds;Parent=Msa0974930-mRNA-1 |
| chr6_4 | CDS | 8465959 | 8466159 | 8465959 | ID=Msa0974930-mRNA-1:cds;Parent=Msa0974930-mRNA-1 |
| chr6_4 | CDS | 8466427 | 8466531 | 8466427 | ID=Msa0974930-mRNA-1:cds;Parent=Msa0974930-mRNA-1 |
| chr6_4 | three_prime_UTR | 8466532 | 8466776 | 8466532 | ID=Msa0974930-mRNA-1:three_prime_utr;Parent=Msa0974930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
