Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732880 | XP_003615340.1 | 93.407 | 91 | 6 | 0 | 1 | 91 | 1 | 91 | 1.13e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732880 | G7JYH8 | 93.407 | 91 | 6 | 0 | 1 | 91 | 1 | 91 | 5.39e-51 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0732880 | 0.847418 | 1.170990e-59 | -8.615850e-47 |
| Msa0020390 | Msa0732880 | 0.804380 | 2.221133e-49 | -8.615850e-47 |
| Msa0020410 | Msa0732880 | 0.818829 | 1.597848e-52 | -8.615850e-47 |
| Msa0034970 | Msa0732880 | 0.812761 | 3.603892e-51 | -8.615850e-47 |
| Msa0037880 | Msa0732880 | 0.804241 | 2.373935e-49 | -8.615850e-47 |
| Msa0038870 | Msa0732880 | 0.809104 | 2.231766e-50 | -8.615850e-47 |
| Msa0043980 | Msa0732880 | 0.833865 | 4.172574e-56 | -8.615850e-47 |
| Msa0047460 | Msa0732880 | 0.817427 | 3.317250e-52 | -8.615850e-47 |
| Msa0049750 | Msa0732880 | 0.802081 | 6.644856e-49 | -8.615850e-47 |
| Msa0051860 | Msa0732880 | 0.823374 | 1.433671e-53 | -8.615850e-47 |
| Msa0058490 | Msa0732880 | 0.818913 | 1.529593e-52 | -8.615850e-47 |
| Msa0058510 | Msa0732880 | 0.821392 | 4.137379e-53 | -8.615850e-47 |
| Msa0077180 | Msa0732880 | 0.801334 | 9.455227e-49 | -8.615850e-47 |
| Msa0086420 | Msa0732880 | 0.822351 | 2.481496e-53 | -8.615850e-47 |
| Msa0090550 | Msa0732880 | 0.831208 | 1.901045e-55 | -8.615850e-47 |
| Msa0096980 | Msa0732880 | 0.834123 | 3.595138e-56 | -8.615850e-47 |
| Msa0104800 | Msa0732880 | 0.830372 | 3.048090e-55 | -8.615850e-47 |
| Msa0108560 | Msa0732880 | 0.816213 | 6.209321e-52 | -8.615850e-47 |
| Msa0118540 | Msa0732880 | 0.805095 | 1.574940e-49 | -8.615850e-47 |
| Msa0604290 | Msa0732880 | 0.837007 | 6.700549e-57 | -8.615850e-47 |
| Msa0621600 | Msa0732880 | 0.818046 | 2.404802e-52 | -8.615850e-47 |
| Msa0628740 | Msa0732880 | 0.812407 | 4.307016e-51 | -8.615850e-47 |
| Msa0639310 | Msa0732880 | 0.804466 | 2.131594e-49 | -8.615850e-47 |
| Msa0640940 | Msa0732880 | 0.805126 | 1.551432e-49 | -8.615850e-47 |
| Msa0659400 | Msa0732880 | 0.810997 | 8.724063e-51 | -8.615850e-47 |
| Msa0666140 | Msa0732880 | 0.814715 | 1.338116e-51 | -8.615850e-47 |
| Msa0673470 | Msa0732880 | 0.826547 | 2.555601e-54 | -8.615850e-47 |
| Msa0679360 | Msa0732880 | 0.818323 | 2.080862e-52 | -8.615850e-47 |
| Msa0682680 | Msa0732880 | 0.810909 | 9.117898e-51 | -8.615850e-47 |
| Msa0703780 | Msa0732880 | 0.808152 | 3.564000e-50 | -8.615850e-47 |
| Msa0711100 | Msa0732880 | 0.820402 | 6.992100e-53 | -8.615850e-47 |
| Msa0721280 | Msa0732880 | 0.808926 | 2.435606e-50 | -8.615850e-47 |
| Msa0732880 | Msa0747260 | 0.805824 | 1.107494e-49 | -8.615850e-47 |
| Msa0732880 | Msa0765180 | 0.821855 | 3.234073e-53 | -8.615850e-47 |
| Msa0732880 | Msa0773850 | 0.860055 | 2.696180e-63 | -8.615850e-47 |
| Msa0732880 | Msa0789020 | 0.800683 | 1.284379e-48 | -8.615850e-47 |
| Msa0732880 | Msa0832150 | 0.834435 | 3.001815e-56 | -8.615850e-47 |
| Msa0732880 | Msa0846230 | 0.800109 | 1.681660e-48 | -8.615850e-47 |
| Msa0732880 | Msa0872440 | 0.824290 | 8.743853e-54 | -8.615850e-47 |
| Msa0732880 | Msa0934840 | 0.823601 | 1.268346e-53 | -8.615850e-47 |
| Msa0732880 | Msa0980880 | 0.808050 | 3.746013e-50 | -8.615850e-47 |
| Msa0732880 | Msa0994370 | 0.835896 | 1.284876e-56 | -8.615850e-47 |
| Msa0732880 | Msa0997970 | 0.807487 | 4.934965e-50 | -8.615850e-47 |
| Msa0732880 | Msa0999190 | 0.806626 | 7.506278e-50 | -8.615850e-47 |
| Msa0732880 | Msa1023180 | 0.824539 | 7.641044e-54 | -8.615850e-47 |
| Msa0732880 | Msa1024750 | 0.814276 | 1.673114e-51 | -8.615850e-47 |
| Msa0732880 | Msa1026640 | 0.819785 | 9.679497e-53 | -8.615850e-47 |
| Msa0732880 | Msa1034150 | 0.809025 | 2.319675e-50 | -8.615850e-47 |
| Msa0732880 | Msa1043050 | 0.834062 | 3.723743e-56 | -8.615850e-47 |
| Msa0732880 | Msa1043510 | 0.800385 | 1.477454e-48 | -8.615850e-47 |
| Msa0732880 | Msa1058750 | 0.840404 | 8.875192e-58 | -8.615850e-47 |
| Msa0732880 | Msa1063510 | 0.806234 | 9.081135e-50 | -8.615850e-47 |
| Msa0732880 | Msa1082020 | 0.837173 | 6.075567e-57 | -8.615850e-47 |
| Msa0732880 | Msa1107260 | 0.823098 | 1.662573e-53 | -8.615850e-47 |
| Msa0732880 | Msa1114410 | 0.846049 | 2.772180e-59 | -8.615850e-47 |
| Msa0732880 | Msa1150710 | 0.837625 | 4.653422e-57 | -8.615850e-47 |
| Msa0732880 | Msa1150900 | 0.806714 | 7.193802e-50 | -8.615850e-47 |
| Msa0732880 | Msa1178580 | 0.810750 | 9.870887e-51 | -8.615850e-47 |
| Msa0732880 | Msa1205590 | 0.809956 | 1.464289e-50 | -8.615850e-47 |
| Msa0732880 | Msa1206100 | 0.823559 | 1.297849e-53 | -8.615850e-47 |
| Msa0732880 | Msa1212950 | 0.805352 | 1.391165e-49 | -8.615850e-47 |
| Msa0732880 | Msa1230080 | 0.825961 | 3.523728e-54 | -8.615850e-47 |
| Msa0732880 | Msa1233850 | 0.823044 | 1.711771e-53 | -8.615850e-47 |
| Msa0732880 | Msa1250530 | 0.822476 | 2.321205e-53 | -8.615850e-47 |
| Msa0732880 | Msa1256470 | 0.800032 | 1.742919e-48 | -8.615850e-47 |
| Msa0732880 | Msa1270660 | 0.821551 | 3.801618e-53 | -8.615850e-47 |
| Msa0732880 | Msa1270730 | 0.819570 | 1.083846e-52 | -8.615850e-47 |
| Msa0732880 | Msa1272620 | 0.815334 | 9.747887e-52 | -8.615850e-47 |
| Msa0732880 | Msa1276150 | 0.807279 | 5.463435e-50 | -8.615850e-47 |
| Msa0732880 | Msa1292400 | 0.801944 | 7.090115e-49 | -8.615850e-47 |
| Msa0732880 | Msa1295930 | 0.826267 | 2.980025e-54 | -8.615850e-47 |
| Msa0732880 | Msa1310400 | 0.826207 | 3.078375e-54 | -8.615850e-47 |
| Msa0732880 | Msa1316440 | 0.811116 | 8.223296e-51 | -8.615850e-47 |
| Msa0732880 | Msa1329550 | 0.827028 | 1.960828e-54 | -8.615850e-47 |
| Msa0732880 | Msa1331320 | 0.803126 | 4.044778e-49 | -8.615850e-47 |
| Msa0732880 | Msa1335230 | 0.816473 | 5.429891e-52 | -8.615850e-47 |
| Msa0732880 | Msa1337170 | 0.821954 | 3.067730e-53 | -8.615850e-47 |
| Msa0732880 | Msa1339190 | 0.805396 | 1.362187e-49 | -8.615850e-47 |
| Msa0732880 | Msa1357430 | 0.805868 | 1.084507e-49 | -8.615850e-47 |
| Msa0732880 | Msa1357890 | 0.812582 | 3.943608e-51 | -8.615850e-47 |
| Msa0732880 | Msa1370590 | 0.810501 | 1.116994e-50 | -8.615850e-47 |
| Msa0732880 | Msa1371240 | 0.808579 | 2.890041e-50 | -8.615850e-47 |
| Msa0732880 | Msa1372580 | 0.810714 | 1.004780e-50 | -8.615850e-47 |
| Msa0732880 | Msa1377820 | 0.807100 | 5.960714e-50 | -8.615850e-47 |
| Msa0732880 | Msa1384100 | 0.810732 | 9.955798e-51 | -8.615850e-47 |
| Msa0732880 | Msa1389140 | 0.804287 | 2.322101e-49 | -8.615850e-47 |
| Msa0732880 | Msa1391750 | 0.804010 | 2.651794e-49 | -8.615850e-47 |
| Msa0732880 | Msa1397120 | 0.839015 | 2.040138e-57 | -8.615850e-47 |
| Msa0732880 | Msa1398090 | 0.809505 | 1.830257e-50 | -8.615850e-47 |
| Msa0732880 | Msa1403890 | 0.828840 | 7.186998e-55 | -8.615850e-47 |
| Msa0732880 | Msa1404550 | 0.809527 | 1.811077e-50 | -8.615850e-47 |
| Msa0732880 | Msa1407600 | 0.836022 | 1.193892e-56 | -8.615850e-47 |
| Msa0732880 | Msa1423820 | 0.807255 | 5.526172e-50 | -8.615850e-47 |
| Msa0732880 | Msa1434420 | -0.811027 | 8.594768e-51 | -8.615850e-47 |
| Msa0732880 | Msa1437130 | 0.805851 | 1.093582e-49 | -8.615850e-47 |
| Msa0732880 | Msa1440190 | 0.832215 | 1.073141e-55 | -8.615850e-47 |
| Msa0732880 | Msa1444120 | 0.807102 | 5.956247e-50 | -8.615850e-47 |
| Msa0732880 | Msa1444740 | 0.802139 | 6.462983e-49 | -8.615850e-47 |
| Msa0732880 | Msa1448630 | 0.819634 | 1.047930e-52 | -8.615850e-47 |
| Msa0732880 | Msa1449750 | 0.832038 | 1.187409e-55 | -8.615850e-47 |
| Msa0732880 | Msa1458610 | 0.832257 | 1.048256e-55 | -8.615850e-47 |
| Msa0732880 | Msa1461280 | 0.802895 | 4.515965e-49 | -8.615850e-47 |
| Msa0732880 | Msa1462060 | 0.813536 | 2.435204e-51 | -8.615850e-47 |
| Msa0732880 | Msa1462290 | 0.832093 | 1.150544e-55 | -8.615850e-47 |
| Msa0123560 | Msa0732880 | 0.806774 | 6.987991e-50 | -8.615850e-47 |
| Msa0140110 | Msa0732880 | 0.804972 | 1.671518e-49 | -8.615850e-47 |
| Msa0145010 | Msa0732880 | 0.835511 | 1.607835e-56 | -8.615850e-47 |
| Msa0151180 | Msa0732880 | 0.815556 | 8.701077e-52 | -8.615850e-47 |
| Msa0157100 | Msa0732880 | 0.804276 | 2.334185e-49 | -8.615850e-47 |
| Msa0167980 | Msa0732880 | 0.802201 | 6.276550e-49 | -8.615850e-47 |
| Msa0175840 | Msa0732880 | 0.858639 | 7.175074e-63 | -8.615850e-47 |
| Msa0187220 | Msa0732880 | 0.810490 | 1.123490e-50 | -8.615850e-47 |
| Msa0189030 | Msa0732880 | 0.812222 | 4.725035e-51 | -8.615850e-47 |
| Msa0190250 | Msa0732880 | 0.817225 | 3.681972e-52 | -8.615850e-47 |
| Msa0194080 | Msa0732880 | 0.806512 | 7.936445e-50 | -8.615850e-47 |
| Msa0196670 | Msa0732880 | 0.815719 | 8.002468e-52 | -8.615850e-47 |
| Msa0206010 | Msa0732880 | 0.827216 | 1.767932e-54 | -8.615850e-47 |
| Msa0217670 | Msa0732880 | 0.813724 | 2.214671e-51 | -8.615850e-47 |
| Msa0217680 | Msa0732880 | 0.820140 | 8.026854e-53 | -8.615850e-47 |
| Msa0223330 | Msa0732880 | 0.802672 | 5.020257e-49 | -8.615850e-47 |
| Msa0233370 | Msa0732880 | 0.802682 | 4.996007e-49 | -8.615850e-47 |
| Msa0236630 | Msa0732880 | 0.810683 | 1.020517e-50 | -8.615850e-47 |
| Msa0376910 | Msa0732880 | 0.836791 | 7.608298e-57 | -8.615850e-47 |
| Msa0385500 | Msa0732880 | 0.809483 | 1.850279e-50 | -8.615850e-47 |
| Msa0391690 | Msa0732880 | 0.828609 | 8.172293e-55 | -8.615850e-47 |
| Msa0412840 | Msa0732880 | 0.800875 | 1.173779e-48 | -8.615850e-47 |
| Msa0429030 | Msa0732880 | 0.813801 | 2.129777e-51 | -8.615850e-47 |
| Msa0433360 | Msa0732880 | 0.821996 | 2.999185e-53 | -8.615850e-47 |
| Msa0471900 | Msa0732880 | 0.831873 | 1.303989e-55 | -8.615850e-47 |
| Msa0472960 | Msa0732880 | -0.822521 | 2.265702e-53 | -8.615850e-47 |
| Msa0477130 | Msa0732880 | -0.803344 | 3.645862e-49 | -8.615850e-47 |
| Msa0479270 | Msa0732880 | 0.841702 | 4.047885e-58 | -8.615850e-47 |
| Msa0246250 | Msa0732880 | 0.802594 | 5.210604e-49 | -8.615850e-47 |
| Msa0246260 | Msa0732880 | 0.815420 | 9.330079e-52 | -8.615850e-47 |
| Msa0257490 | Msa0732880 | 0.813566 | 2.398480e-51 | -8.615850e-47 |
| Msa0261720 | Msa0732880 | 0.832244 | 1.056054e-55 | -8.615850e-47 |
| Msa0283420 | Msa0732880 | 0.805916 | 1.059391e-49 | -8.615850e-47 |
| Msa0285330 | Msa0732880 | 0.802954 | 4.391241e-49 | -8.615850e-47 |
| Msa0286670 | Msa0732880 | 0.848851 | 4.708972e-60 | -8.615850e-47 |
| Msa0287410 | Msa0732880 | 0.837151 | 6.155299e-57 | -8.615850e-47 |
| Msa0296790 | Msa0732880 | 0.825494 | 4.546536e-54 | -8.615850e-47 |
| Msa0309270 | Msa0732880 | 0.819622 | 1.054122e-52 | -8.615850e-47 |
| Msa0311700 | Msa0732880 | 0.813909 | 2.015913e-51 | -8.615850e-47 |
| Msa0311720 | Msa0732880 | 0.803454 | 3.459137e-49 | -8.615850e-47 |
| Msa0321690 | Msa0732880 | 0.821341 | 4.250082e-53 | -8.615850e-47 |
| Msa0326110 | Msa0732880 | 0.835065 | 2.084605e-56 | -8.615850e-47 |
| Msa0343850 | Msa0732880 | 0.801966 | 7.016302e-49 | -8.615850e-47 |
| Msa0346430 | Msa0732880 | 0.829332 | 5.460464e-55 | -8.615850e-47 |
| Msa0363640 | Msa0732880 | 0.809483 | 1.850861e-50 | -8.615850e-47 |
| Msa0482940 | Msa0732880 | 0.809436 | 1.893892e-50 | -8.615850e-47 |
| Msa0504780 | Msa0732880 | 0.803517 | 3.356566e-49 | -8.615850e-47 |
| Msa0542290 | Msa0732880 | 0.807091 | 5.987976e-50 | -8.615850e-47 |
| Msa0542560 | Msa0732880 | 0.824323 | 8.589224e-54 | -8.615850e-47 |
| Msa0547160 | Msa0732880 | 0.828949 | 6.764130e-55 | -8.615850e-47 |
| Msa0566350 | Msa0732880 | 0.804031 | 2.625968e-49 | -8.615850e-47 |
| Msa0591710 | Msa0732880 | 0.800997 | 1.108157e-48 | -8.615850e-47 |
| Msa0600450 | Msa0732880 | 0.827167 | 1.817031e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732880 | MtrunA17_Chr5g0427841 | 93.407 | 91 | 6 | 0 | 1 | 91 | 1 | 91 | 1.04e-54 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732880 | AT2G38465.1 | 57.971 | 69 | 29 | 0 | 19 | 87 | 13 | 81 | 8.99e-22 | 81.6 |
Find 15 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCACAACAAAACTTCTTT+TGG | 0.285814 | 5_1:+45562986 | Msa0732880:CDS |
| ATATATATTTCATCTCTATA+AGG | 0.409482 | 5_1:+45562910 | Msa0732880:five_prime_UTR |
| CATTAATTTAATTAACTATG+AGG | 0.415967 | 5_1:-45563318 | None:intergenic |
| CTGCTGAACATATCAAGAAT+AGG | 0.429170 | 5_1:+45563286 | Msa0732880:CDS |
| AAAAGCCTTCTTTGTGGGTC+AGG | 0.435149 | 5_1:+45563072 | Msa0732880:CDS |
| TATGCAAAAGCCTTCTTTGT+GGG | 0.462187 | 5_1:+45563067 | Msa0732880:CDS |
| AAAAGTAGCTATGGAAGAGA+TGG | 0.471774 | 5_1:+45562937 | Msa0732880:exon |
| GTTTATTTATCTACAAAAGA+AGG | 0.478248 | 5_1:+45562830 | Msa0732880:five_prime_UTR |
| TAAGGCAATAAAAGTAGCTA+TGG | 0.485068 | 5_1:+45562928 | Msa0732880:exon |
| ATCTACAAAAGAAGGACAAA+TGG | 0.493293 | 5_1:+45562838 | Msa0732880:five_prime_UTR |
| ATATGCAAAAGCCTTCTTTG+TGG | 0.519860 | 5_1:+45563066 | Msa0732880:CDS |
| AATTACCTGACCCACAAAGA+AGG | 0.535666 | 5_1:-45563077 | None:intergenic |
| AAAGTAGCTATGGAAGAGAT+GGG | 0.580832 | 5_1:+45562938 | Msa0732880:exon |
| GGCTTCAAAGAAACAAGTTG+AGG | 0.622095 | 5_1:+45563254 | Msa0732880:CDS |
| AGCAAGTGAAGCTGAACTTG+AGG | 0.634101 | 5_1:+45563233 | Msa0732880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATTTCATCTCTATA+AGG | + | chr5_1:45562910-45562929 | Msa0732880:five_prime_UTR | 15.0% |
| !! | CATTAATTTAATTAACTATG+AGG | - | chr5_1:45563321-45563340 | None:intergenic | 15.0% |
| !! | GTTTATTTATCTACAAAAGA+AGG | + | chr5_1:45562830-45562849 | Msa0732880:five_prime_UTR | 20.0% |
| !!! | TGTTATTTTGAAATTGATTG+AGG | + | chr5_1:45563155-45563174 | Msa0732880:intron | 20.0% |
| !!! | AAAGAAGTTTTGTTGTGATT+TGG | - | chr5_1:45562986-45563005 | None:intergenic | 25.0% |
| !! | AATCACAACAAAACTTCTTT+TGG | + | chr5_1:45562986-45563005 | Msa0732880:CDS | 25.0% |
| ! | AGATAAGTAGTAGCTAAAAA+TGG | - | chr5_1:45563126-45563145 | None:intergenic | 25.0% |
| ! | ATTGTGGTGTGAAAAAAAAT+AGG | + | chr5_1:45563179-45563198 | Msa0732880:intron | 25.0% |
| ! | TATAACTGCAAAAAATGAGA+AGG | + | chr5_1:45563209-45563228 | Msa0732880:CDS | 25.0% |
| ATCTACAAAAGAAGGACAAA+TGG | + | chr5_1:45562838-45562857 | Msa0732880:five_prime_UTR | 30.0% | |
| TAAGGCAATAAAAGTAGCTA+TGG | + | chr5_1:45562928-45562947 | Msa0732880:exon | 30.0% | |
| TAGTAGCTAAAAATGGAAAG+GGG | - | chr5_1:45563119-45563138 | None:intergenic | 30.0% | |
| GTAGTAGCTAAAAATGGAAA+GGG | - | chr5_1:45563120-45563139 | None:intergenic | 30.0% | |
| AGTAGTAGCTAAAAATGGAA+AGG | - | chr5_1:45563121-45563140 | None:intergenic | 30.0% | |
| TGAAATTGATTGAGGAATTG+TGG | + | chr5_1:45563163-45563182 | Msa0732880:intron | 30.0% | |
| AAAAGTAGCTATGGAAGAGA+TGG | + | chr5_1:45562937-45562956 | Msa0732880:exon | 35.0% | |
| AAAGTAGCTATGGAAGAGAT+GGG | + | chr5_1:45562938-45562957 | Msa0732880:exon | 35.0% | |
| ATATGCAAAAGCCTTCTTTG+TGG | + | chr5_1:45563066-45563085 | Msa0732880:CDS | 35.0% | |
| TATGCAAAAGCCTTCTTTGT+GGG | + | chr5_1:45563067-45563086 | Msa0732880:CDS | 35.0% | |
| !! | AAATGGAAAGGGGTTGTTTT+TGG | - | chr5_1:45563109-45563128 | None:intergenic | 35.0% |
| CTGCTGAACATATCAAGAAT+AGG | + | chr5_1:45563286-45563305 | Msa0732880:CDS | 35.0% | |
| AATTACCTGACCCACAAAGA+AGG | - | chr5_1:45563080-45563099 | None:intergenic | 40.0% | |
| GGCTTCAAAGAAACAAGTTG+AGG | + | chr5_1:45563254-45563273 | Msa0732880:CDS | 40.0% | |
| AAAAGCCTTCTTTGTGGGTC+AGG | + | chr5_1:45563072-45563091 | Msa0732880:CDS | 45.0% | |
| AGCAAGTGAAGCTGAACTTG+AGG | + | chr5_1:45563233-45563252 | Msa0732880:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 45562817 | 45563415 | 45562817 | ID=Msa0732880;Name=Msa0732880 |
| chr5_1 | mRNA | 45562817 | 45563415 | 45562817 | ID=Msa0732880-mRNA-1;Parent=Msa0732880;Name=Msa0732880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|2|86|91 |
| chr5_1 | exon | 45562817 | 45563093 | 45562817 | ID=Msa0732880-mRNA-1:exon:12999;Parent=Msa0732880-mRNA-1 |
| chr5_1 | exon | 45563201 | 45563415 | 45563201 | ID=Msa0732880-mRNA-1:exon:13000;Parent=Msa0732880-mRNA-1 |
| chr5_1 | five_prime_UTR | 45562817 | 45562946 | 45562817 | ID=Msa0732880-mRNA-1:five_prime_utr;Parent=Msa0732880-mRNA-1 |
| chr5_1 | CDS | 45562947 | 45563093 | 45562947 | ID=Msa0732880-mRNA-1:cds;Parent=Msa0732880-mRNA-1 |
| chr5_1 | CDS | 45563201 | 45563329 | 45563201 | ID=Msa0732880-mRNA-1:cds;Parent=Msa0732880-mRNA-1 |
| chr5_1 | three_prime_UTR | 45563330 | 45563415 | 45563330 | ID=Msa0732880-mRNA-1:three_prime_utr;Parent=Msa0732880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
