Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265230 | XP_003597561.2 | 93.548 | 248 | 14 | 1 | 4 | 249 | 56 | 303 | 1.57e-152 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265230 | sp|F4IEY4|TRB5_ARATH | 43.011 | 186 | 79 | 7 | 74 | 246 | 113 | 284 | 1.33e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265230 | G7IS32 | 93.548 | 248 | 14 | 1 | 4 | 249 | 56 | 303 | 7.52e-153 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212750 | Msa0265230 | 0.814246 | 1.698340e-51 | -8.615850e-47 |
| Msa0241740 | Msa0265230 | -0.809469 | 1.863071e-50 | -8.615850e-47 |
| Msa0265230 | Msa0377530 | -0.805144 | 1.537970e-49 | -8.615850e-47 |
| Msa0265230 | Msa0388030 | 0.825327 | 4.979321e-54 | -8.615850e-47 |
| Msa0265230 | Msa0452810 | 0.821152 | 4.699678e-53 | -8.615850e-47 |
| Msa0265230 | Msa0517490 | -0.810368 | 1.193697e-50 | -8.615850e-47 |
| Msa0265230 | Msa0585620 | 0.800267 | 1.561873e-48 | -8.615850e-47 |
| Msa0265230 | Msa0585650 | 0.802346 | 5.860701e-49 | -8.615850e-47 |
| Msa0265230 | Msa0799060 | -0.805260 | 1.454937e-49 | -8.615850e-47 |
| Msa0265230 | Msa0876860 | 0.809233 | 2.094217e-50 | -8.615850e-47 |
| Msa0265230 | Msa1021510 | -0.802618 | 5.150869e-49 | -8.615850e-47 |
| Msa0265230 | Msa1152950 | -0.812393 | 4.337549e-51 | -8.615850e-47 |
| Msa0265230 | Msa1174310 | -0.811049 | 8.503661e-51 | -8.615850e-47 |
| Msa0265230 | Msa1422840 | -0.809261 | 2.064729e-50 | -8.615850e-47 |
| Msa0265230 | Msa1435400 | -0.801833 | 7.470695e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265230 | MtrunA17_Chr2g0329921 | 93.548 | 248 | 14 | 1 | 4 | 249 | 56 | 303 | 1.45e-156 | 437 |
| Msa0265230 | MtrunA17_Chr8g0342871 | 49.405 | 168 | 78 | 3 | 86 | 248 | 120 | 285 | 1.14e-48 | 162 |
| Msa0265230 | MtrunA17_Chr7g0260771 | 42.254 | 71 | 38 | 2 | 83 | 152 | 60 | 128 | 1.11e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265230 | AT1G72740.2 | 43.889 | 180 | 80 | 6 | 74 | 246 | 113 | 278 | 6.53e-36 | 129 |
| Msa0265230 | AT1G72740.1 | 43.011 | 186 | 79 | 7 | 74 | 246 | 113 | 284 | 1.36e-33 | 123 |
| Msa0265230 | AT1G17520.4 | 41.818 | 165 | 87 | 3 | 86 | 246 | 128 | 287 | 6.83e-24 | 97.8 |
| Msa0265230 | AT1G54260.1 | 35.602 | 191 | 90 | 4 | 87 | 246 | 6 | 194 | 7.00e-23 | 92.8 |
| Msa0265230 | AT1G17520.1 | 39.766 | 171 | 88 | 3 | 86 | 246 | 128 | 293 | 3.19e-22 | 93.2 |
| Msa0265230 | AT1G17520.3 | 41.566 | 166 | 87 | 4 | 86 | 246 | 128 | 288 | 3.82e-22 | 92.8 |
| Msa0265230 | AT1G17520.2 | 39.535 | 172 | 88 | 4 | 86 | 246 | 128 | 294 | 1.42e-20 | 89.0 |
| Msa0265230 | AT2G18050.1 | 40.476 | 84 | 46 | 2 | 85 | 166 | 24 | 105 | 2.76e-11 | 60.8 |
| Msa0265230 | AT1G54240.1 | 31.073 | 177 | 96 | 8 | 89 | 246 | 57 | 226 | 3.80e-11 | 61.6 |
Find 65 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTTCGCTTCACTTAATT+TGG | 0.214811 | 2_2:+65456205 | Msa0265230:exon |
| CCTGGCAGGTCCATTTCTTT+TGG | 0.234603 | 2_2:-65455881 | None:intergenic |
| ACAGAAAGATATTCAAAGTT+TGG | 0.268113 | 2_2:+65456019 | Msa0265230:CDS |
| AGTTTCGGAAGCTTCCTTTA+TGG | 0.269510 | 2_2:-65455933 | None:intergenic |
| CTCAAAGGAACTTGAAATAA+AGG | 0.282782 | 2_2:-65456322 | None:intergenic |
| CAGAAAGATATTCAAAGTTT+GGG | 0.300205 | 2_2:+65456020 | Msa0265230:CDS |
| TGCATATGATGATGCCATAA+AGG | 0.370905 | 2_2:+65455919 | Msa0265230:CDS |
| ACAAAATGGTTACAAGATAA+AGG | 0.372290 | 2_2:+65455811 | Msa0265230:CDS |
| TGCTGCTGCTGCTGTTGCTC+CGG | 0.384625 | 2_2:+65451935 | Msa0265230:CDS |
| CATCACCTGCAGGTACAAAA+TGG | 0.394363 | 2_2:+65455797 | Msa0265230:intron |
| ACTCCCAAGGGTAAACCATC+TGG | 0.398706 | 2_2:+65451834 | Msa0265230:CDS |
| AAGTCTGCAGGCTAGAGTTT+CGG | 0.422011 | 2_2:-65455948 | None:intergenic |
| ACCACCTACACCAAAAGAAA+TGG | 0.427940 | 2_2:+65455871 | Msa0265230:CDS |
| GCAGAAGCAGCAGGAGTACC+AGG | 0.430652 | 2_2:-65451903 | None:intergenic |
| TGAAGCTCTATCAACAATCA+AGG | 0.441177 | 2_2:+65453533 | Msa0265230:CDS |
| GGTACTCCTGCTGCTTCTGC+TGG | 0.444786 | 2_2:+65451906 | Msa0265230:CDS |
| AGCATTTAAGTCAGAACCAT+TGG | 0.454179 | 2_2:-65453559 | None:intergenic |
| GACCCAGATGGTTTACCCTT+GGG | 0.462495 | 2_2:-65451837 | None:intergenic |
| CCTTCTCCGTCTCCTGCTCC+TGG | 0.470392 | 2_2:+65451885 | Msa0265230:CDS |
| AGACCCAGATGGTTTACCCT+TGG | 0.488584 | 2_2:-65451838 | None:intergenic |
| GGAGCAACAGCAGCAGCAGC+AGG | 0.489385 | 2_2:-65451933 | None:intergenic |
| GGAGTAGCATTGCTTGGAGC+AGG | 0.489776 | 2_2:-65451864 | None:intergenic |
| GGAGTACCAGCAGAAGCAGC+AGG | 0.492329 | 2_2:-65451912 | None:intergenic |
| TTCTGAGAAGGCTGGCTAGT+AGG | 0.497538 | 2_2:-65452002 | None:intergenic |
| CTCAAGCTCAGACTCCGATT+CGG | 0.498629 | 2_2:+65451976 | Msa0265230:CDS |
| AATTATTAGATGACCCTGGC+AGG | 0.501469 | 2_2:-65455895 | None:intergenic |
| ATTATACTGAGGGTAAATCT+TGG | 0.508478 | 2_2:-65452039 | None:intergenic |
| GCAGCAGGAGTACCAGGAGC+AGG | 0.512995 | 2_2:-65451897 | None:intergenic |
| TGCTATTATTAGCTTCATTG+AGG | 0.513608 | 2_2:+65453578 | Msa0265230:CDS |
| GCATTTAAGTCAGAACCATT+GGG | 0.513681 | 2_2:-65453558 | None:intergenic |
| CTCCGCGTCAGCAAGTCTGC+AGG | 0.514816 | 2_2:-65455960 | None:intergenic |
| CACTAGGTGCAAAGTTAAGA+AGG | 0.516076 | 2_2:+65454599 | Msa0265230:CDS |
| GGAGAAGGAGTAGCATTGCT+TGG | 0.518958 | 2_2:-65451870 | None:intergenic |
| TACAAGATAAAGGACACCTC+AGG | 0.525665 | 2_2:+65455821 | Msa0265230:CDS |
| GGTGTAGCAGCAACATTGAC+CGG | 0.528722 | 2_2:-65451954 | None:intergenic |
| CTCCCAAGGGTAAACCATCT+GGG | 0.529021 | 2_2:+65451835 | Msa0265230:CDS |
| CCAAAAGAAATGGACCTGCC+AGG | 0.529549 | 2_2:+65455881 | Msa0265230:CDS |
| CAAAATTTCAGAAGGACACT+AGG | 0.531519 | 2_2:+65454583 | Msa0265230:CDS |
| TTTGGCTACTGCAGCAGTCA+GGG | 0.538485 | 2_2:+65455994 | Msa0265230:CDS |
| CAGTCAAGGGAAACTTGAAA+AGG | 0.538946 | 2_2:+65454627 | Msa0265230:CDS |
| CTCAAAGTCAAAATTTCAGA+AGG | 0.543098 | 2_2:+65454575 | Msa0265230:CDS |
| ACAAGATAAAGGACACCTCA+GGG | 0.552157 | 2_2:+65455822 | Msa0265230:CDS |
| GGAGTACCAGGAGCAGGAGA+CGG | 0.555301 | 2_2:-65451891 | None:intergenic |
| TTAAGAAGGCTTGTCAGTCA+AGG | 0.558246 | 2_2:+65454613 | Msa0265230:CDS |
| TGTCATAACTTGACATGTGT+TGG | 0.558378 | 2_2:+65456445 | Msa0265230:three_prime_UTR |
| CCAGGAGCAGGAGACGGAGA+AGG | 0.566651 | 2_2:-65451885 | None:intergenic |
| TAAGAAGGCTTGTCAGTCAA+GGG | 0.572247 | 2_2:+65454614 | Msa0265230:CDS |
| TGTCATCATTCTGAGAAGGC+TGG | 0.574703 | 2_2:-65452010 | None:intergenic |
| CGAATCGGAGTCTGAGCTTG+AGG | 0.575521 | 2_2:-65451975 | None:intergenic |
| CAAAAGAAATGGACCTGCCA+GGG | 0.589349 | 2_2:+65455882 | Msa0265230:CDS |
| TCAAAACCCTAAAACTCCCA+AGG | 0.596857 | 2_2:+65451821 | Msa0265230:CDS |
| TCTGTGATGGCAGGTATGCT+CGG | 0.596964 | 2_2:+65456178 | Msa0265230:intron |
| GATAAAGGACACCTCAGGGG+GGG | 0.598939 | 2_2:+65455826 | Msa0265230:CDS |
| AAGATAAAGGACACCTCAGG+GGG | 0.599263 | 2_2:+65455824 | Msa0265230:CDS |
| TGGCTAGTAGGAGTCCGAAT+CGG | 0.600441 | 2_2:-65451990 | None:intergenic |
| AAGATATTCAAAGTTTGGGG+AGG | 0.610909 | 2_2:+65456024 | Msa0265230:CDS |
| GCATTGTCATCATTCTGAGA+AGG | 0.619580 | 2_2:-65452014 | None:intergenic |
| AGCCTGCAGACTTGCTGACG+CGG | 0.625031 | 2_2:+65455958 | Msa0265230:CDS |
| AGAAAGATATTCAAAGTTTG+GGG | 0.625477 | 2_2:+65456021 | Msa0265230:CDS |
| GCAAAATTATTAGATGACCC+TGG | 0.640236 | 2_2:-65455899 | None:intergenic |
| CAAAACCCTAAAACTCCCAA+GGG | 0.647393 | 2_2:+65451822 | Msa0265230:CDS |
| TCAACAATCAAGGATCCCAA+TGG | 0.653809 | 2_2:+65453543 | Msa0265230:CDS |
| GGAGCAGGAGAAGACCCAGA+TGG | 0.666811 | 2_2:-65451849 | None:intergenic |
| CAAGATAAAGGACACCTCAG+GGG | 0.703057 | 2_2:+65455823 | Msa0265230:CDS |
| AGATAAAGGACACCTCAGGG+GGG | 0.706714 | 2_2:+65455825 | Msa0265230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTTTTTTTTTTTGAA+AGG | + | chr2_2:65453943-65453962 | Msa0265230:intron | 10.0% |
| !! | ATCATATAATATCAATATAA+AGG | - | chr2_2:65455040-65455059 | None:intergenic | 10.0% |
| !!! | AAAGGTTTAAATTTTTTATT+GGG | - | chr2_2:65456307-65456326 | None:intergenic | 10.0% |
| !!! | TAAAGGTTTAAATTTTTTAT+TGG | - | chr2_2:65456308-65456327 | None:intergenic | 10.0% |
| !! | ACAGTAAGTAATATAATTTA+GGG | + | chr2_2:65452261-65452280 | Msa0265230:intron | 15.0% |
| !! | AACAAAAATAAGATATATCA+TGG | - | chr2_2:65453436-65453455 | None:intergenic | 15.0% |
| !!! | TTGTACTTTTTATTTTTATC+AGG | + | chr2_2:65453493-65453512 | Msa0265230:intron | 15.0% |
| !!! | TTTTTGTTTTATACTTTTTG+AGG | + | chr2_2:65454513-65454532 | Msa0265230:intron | 15.0% |
| !! | ATAATATCAATATAAAGGAA+AGG | - | chr2_2:65455035-65455054 | None:intergenic | 15.0% |
| !!! | AAGGTTTAAATTTTTTATTG+GGG | - | chr2_2:65456306-65456325 | None:intergenic | 15.0% |
| !!! | TTTTGTGTTACTTTTTTTTT+TGG | + | chr2_2:65456353-65456372 | Msa0265230:three_prime_UTR | 15.0% |
| !!! | TTTGTGTTACTTTTTTTTTT+GGG | + | chr2_2:65456354-65456373 | Msa0265230:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTGGGAATAAAAT+TGG | + | chr2_2:65456365-65456384 | Msa0265230:three_prime_UTR | 15.0% |
| !! | ACAAAATTACATAAAGAAAG+GGG | - | chr2_2:65452071-65452090 | None:intergenic | 20.0% |
| !! | CACAAAATTACATAAAGAAA+GGG | - | chr2_2:65452072-65452091 | None:intergenic | 20.0% |
| !! | TCACAAAATTACATAAAGAA+AGG | - | chr2_2:65452073-65452092 | None:intergenic | 20.0% |
| !! | GACAGTAAGTAATATAATTT+AGG | + | chr2_2:65452260-65452279 | Msa0265230:intron | 20.0% |
| !! | ATGGTAAGTTATATGATTTA+GGG | + | chr2_2:65452332-65452351 | Msa0265230:intron | 20.0% |
| !! | ACAAAATACTGAATTATGAA+TGG | + | chr2_2:65452647-65452666 | Msa0265230:intron | 20.0% |
| !! | CAAAATACTGAATTATGAAT+GGG | + | chr2_2:65452648-65452667 | Msa0265230:intron | 20.0% |
| !! | AAAATACTGAATTATGAATG+GGG | + | chr2_2:65452649-65452668 | Msa0265230:intron | 20.0% |
| !!! | CACATTCTTATTATACATTT+TGG | - | chr2_2:65452838-65452857 | None:intergenic | 20.0% |
| !!! | TGTGTTTTTTTAAAGATGAA+GGG | + | chr2_2:65453231-65453250 | Msa0265230:intron | 20.0% |
| !! | ATAATATGTTCTTAATTGAC+AGG | - | chr2_2:65453463-65453482 | None:intergenic | 20.0% |
| !! | TCAATTAAGAACATATTATG+AGG | + | chr2_2:65453464-65453483 | Msa0265230:intron | 20.0% |
| !! | CAATTAAGAACATATTATGA+GGG | + | chr2_2:65453465-65453484 | Msa0265230:intron | 20.0% |
| !!! | AAATATGCAATTTTTACATG+TGG | - | chr2_2:65454328-65454347 | None:intergenic | 20.0% |
| !!! | ACACAATCTCAAATTTTATT+TGG | - | chr2_2:65454354-65454373 | None:intergenic | 20.0% |
| !! | AATTTATTTACGAGTAGATA+GGG | - | chr2_2:65456112-65456131 | None:intergenic | 20.0% |
| !! | AAATTTATTTACGAGTAGAT+AGG | - | chr2_2:65456113-65456132 | None:intergenic | 20.0% |
| !!! | TTTTGTTTCAACATTTAAAC+TGG | + | chr2_2:65456244-65456263 | Msa0265230:three_prime_UTR | 20.0% |
| !!! | AGGTTTAAATTTTTTATTGG+GGG | - | chr2_2:65456305-65456324 | None:intergenic | 20.0% |
| !! | AAAAAGTAACACAAAAACAT+TGG | - | chr2_2:65456349-65456368 | None:intergenic | 20.0% |
| !!! | AAGTGGTTTTTTTTCTATAT+AGG | + | chr2_2:65456403-65456422 | Msa0265230:three_prime_UTR | 20.0% |
| !!! | TTTTTTTCTATATAGGAGAT+TGG | + | chr2_2:65456410-65456429 | Msa0265230:three_prime_UTR | 20.0% |
| !!! | TTTGTGATTGATTTTTGTTC+AGG | + | chr2_2:65451768-65451787 | Msa0265230:five_prime_UTR | 25.0% |
| !! | TGATTTTTGTTCAGGATAAA+TGG | + | chr2_2:65451776-65451795 | Msa0265230:exon | 25.0% |
| ! | GATGGTAAGTTATATGATTT+AGG | + | chr2_2:65452331-65452350 | Msa0265230:intron | 25.0% |
| ! | TATCCAATTTACTCTCAAAT+TGG | - | chr2_2:65452359-65452378 | None:intergenic | 25.0% |
| ! | ATTTGCAAAAATTCAAAACC+AGG | + | chr2_2:65452402-65452421 | Msa0265230:intron | 25.0% |
| ! | TTTGCAAAAATTCAAAACCA+GGG | + | chr2_2:65452403-65452422 | Msa0265230:intron | 25.0% |
| !! | TTTGCCTAATTGCAAATTTT+AGG | + | chr2_2:65452429-65452448 | Msa0265230:intron | 25.0% |
| !! | TTGCCTAATTGCAAATTTTA+GGG | + | chr2_2:65452430-65452449 | Msa0265230:intron | 25.0% |
| ! | TAAATATACAATCCTTTCAG+AGG | - | chr2_2:65452695-65452714 | None:intergenic | 25.0% |
| !!! | AATTTTTCAAATGAGATGGA+GGG | - | chr2_2:65452939-65452958 | None:intergenic | 25.0% |
| !!! | TAATTTTTCAAATGAGATGG+AGG | - | chr2_2:65452940-65452959 | None:intergenic | 25.0% |
| !!! | GAGTAATTTTTCAAATGAGA+TGG | - | chr2_2:65452943-65452962 | None:intergenic | 25.0% |
| ! | TATGGGATATAATTGTATCA+TGG | - | chr2_2:65453013-65453032 | None:intergenic | 25.0% |
| ! | GAGACAAATTAACAATAGAT+GGG | + | chr2_2:65453036-65453055 | Msa0265230:intron | 25.0% |
| ! | AGACAAATTAACAATAGATG+GGG | + | chr2_2:65453037-65453056 | Msa0265230:intron | 25.0% |
| ! | CTATGAATTAAATGGAGAAT+TGG | - | chr2_2:65453173-65453192 | None:intergenic | 25.0% |
| ! | TCCATTTAATTCATAGAAAG+TGG | + | chr2_2:65453177-65453196 | Msa0265230:intron | 25.0% |
| !!! | CTGTGTTTTTTTAAAGATGA+AGG | + | chr2_2:65453230-65453249 | Msa0265230:intron | 25.0% |
| !!! | AAAGTGTTCTGATTTTAACA+TGG | + | chr2_2:65453285-65453304 | Msa0265230:intron | 25.0% |
| !! | TTTTATCAGGTACAATTCAT+TGG | + | chr2_2:65453506-65453525 | Msa0265230:intron | 25.0% |
| ! | TACTTATGATCACTATTTAG+TGG | + | chr2_2:65453642-65453661 | Msa0265230:intron | 25.0% |
| ! | AAAGATCTTAGATTGAATTG+CGG | + | chr2_2:65453727-65453746 | Msa0265230:intron | 25.0% |
| ! | AATATGTAACGTCAATCATT+TGG | + | chr2_2:65453895-65453914 | Msa0265230:intron | 25.0% |
| ! | ATATGTAACGTCAATCATTT+GGG | + | chr2_2:65453896-65453915 | Msa0265230:intron | 25.0% |
| ! | AGAGGGACTAAAATAAAAAA+TGG | + | chr2_2:65454150-65454169 | Msa0265230:intron | 25.0% |
| ! | GAGGGACTAAAATAAAAAAT+GGG | + | chr2_2:65454151-65454170 | Msa0265230:intron | 25.0% |
| ! | TAAAAAATGGGTATCTATAG+AGG | + | chr2_2:65454163-65454182 | Msa0265230:intron | 25.0% |
| ! | AAAAAATGGGTATCTATAGA+GGG | + | chr2_2:65454164-65454183 | Msa0265230:intron | 25.0% |
| !!! | TTTGCCATTTATTTTTACAC+CGG | + | chr2_2:65454265-65454284 | Msa0265230:intron | 25.0% |
| !!! | TGAATTGATTTTAAACTCTC+CGG | - | chr2_2:65454287-65454306 | None:intergenic | 25.0% |
| ! | AAAATCAATTCATCAACTCA+AGG | + | chr2_2:65454295-65454314 | Msa0265230:intron | 25.0% |
| !! | GCTTTTTGATCTTTTAAATG+CGG | + | chr2_2:65454468-65454487 | Msa0265230:intron | 25.0% |
| !! | CTTTTTGATCTTTTAAATGC+GGG | + | chr2_2:65454469-65454488 | Msa0265230:intron | 25.0% |
| !!! | ATTTCTTTAAAGCATTACAG+AGG | - | chr2_2:65454662-65454681 | None:intergenic | 25.0% |
| !!! | GTTAGTTACTTATTTCTGTT+TGG | + | chr2_2:65454780-65454799 | Msa0265230:intron | 25.0% |
| !! | TTTTTGAATTTCTGTCACAT+AGG | + | chr2_2:65454918-65454937 | Msa0265230:intron | 25.0% |
| ! | ACAATAATTTCTTCAGCAAT+GGG | - | chr2_2:65455079-65455098 | None:intergenic | 25.0% |
| ! | GATAAGGATAACGAATAAAA+AGG | - | chr2_2:65455130-65455149 | None:intergenic | 25.0% |
| !!! | TATTTCTCACTGATTTTTTC+CGG | + | chr2_2:65455225-65455244 | Msa0265230:intron | 25.0% |
| !!! | TTTTACTCTGTTACTTCTAA+TGG | + | chr2_2:65455346-65455365 | Msa0265230:intron | 25.0% |
| ! | TACTCAAATAAACACAAACA+CGG | - | chr2_2:65455512-65455531 | None:intergenic | 25.0% |
| !! | GTGTTTATTTGAGTATGTTT+TGG | + | chr2_2:65455517-65455536 | Msa0265230:intron | 25.0% |
| ! | ACAAAATGGTTACAAGATAA+AGG | + | chr2_2:65455811-65455830 | Msa0265230:CDS | 25.0% |
| ! | ACAGAAAGATATTCAAAGTT+TGG | + | chr2_2:65456019-65456038 | Msa0265230:CDS | 25.0% |
| ! | CAGAAAGATATTCAAAGTTT+GGG | + | chr2_2:65456020-65456039 | Msa0265230:CDS | 25.0% |
| ! | AGAAAGATATTCAAAGTTTG+GGG | + | chr2_2:65456021-65456040 | Msa0265230:CDS | 25.0% |
| ! | TTACTTGCATAACTTATAGT+TGG | - | chr2_2:65456137-65456156 | None:intergenic | 25.0% |
| !! | TAAAATGACCATTGTTCTTT+TGG | + | chr2_2:65456154-65456173 | Msa0265230:intron | 25.0% |
| ! | TGTTGAAACAAAAACACTAT+AGG | - | chr2_2:65456237-65456256 | None:intergenic | 25.0% |
| !! | TAAAAACATTTTTCACTGGA+TGG | - | chr2_2:65456271-65456290 | None:intergenic | 25.0% |
| !!! | TTTAAATTTTTTATTGGGGG+GGG | - | chr2_2:65456302-65456321 | None:intergenic | 25.0% |
| !!! | GTTTAAATTTTTTATTGGGG+GGG | - | chr2_2:65456303-65456322 | None:intergenic | 25.0% |
| !!! | GGTTTAAATTTTTTATTGGG+GGG | - | chr2_2:65456304-65456323 | None:intergenic | 25.0% |
| ! | TTTTTGTTCAGGATAAATGG+CGG | + | chr2_2:65451779-65451798 | Msa0265230:exon | 30.0% |
| ATTATACTGAGGGTAAATCT+TGG | - | chr2_2:65452042-65452061 | None:intergenic | 30.0% | |
| TTACATAAAGAAAGGGGAAA+AGG | - | chr2_2:65452065-65452084 | None:intergenic | 30.0% | |
| AGGTGTAAACAAACAAATCA+GGG | - | chr2_2:65452163-65452182 | None:intergenic | 30.0% | |
| AAGGTGTAAACAAACAAATC+AGG | - | chr2_2:65452164-65452183 | None:intergenic | 30.0% | |
| TGCTCTATTCGTAAATTTCA+AGG | - | chr2_2:65452183-65452202 | None:intergenic | 30.0% | |
| ! | TGCCTAATTGCAAATTTTAG+GGG | + | chr2_2:65452431-65452450 | Msa0265230:intron | 30.0% |
| !! | ATTTTAGGGGTGTAAATGTT+CGG | + | chr2_2:65452444-65452463 | Msa0265230:intron | 30.0% |
| TTCAATTTCATTGGGTGAAT+TGG | + | chr2_2:65452471-65452490 | Msa0265230:intron | 30.0% | |
| TGGTGATTTACTCTTTGATT+TGG | + | chr2_2:65452491-65452510 | Msa0265230:intron | 30.0% | |
| !! | TTTACTCTTTGATTTGGTAC+TGG | + | chr2_2:65452497-65452516 | Msa0265230:intron | 30.0% |
| ! | GATAAAAGTACGAGTTTGAT+AGG | + | chr2_2:65452519-65452538 | Msa0265230:intron | 30.0% |
| ATGAGTTCTCATTAGATGTT+GGG | - | chr2_2:65452574-65452593 | None:intergenic | 30.0% | |
| !!! | CTGCATGATTTTTTCACAAT+AGG | - | chr2_2:65452749-65452768 | None:intergenic | 30.0% |
| CTTGATCCAACAATCAAAAT+CGG | - | chr2_2:65452785-65452804 | None:intergenic | 30.0% | |
| TTTGATTGTTGGATCAAGAT+TGG | + | chr2_2:65452787-65452806 | Msa0265230:intron | 30.0% | |
| ACCATCTGATTAAGATCATA+AGG | - | chr2_2:65452863-65452882 | None:intergenic | 30.0% | |
| !! | ATTTTTCAAATGAGATGGAG+GGG | - | chr2_2:65452938-65452957 | None:intergenic | 30.0% |
| TGAAAAATTACTCTTCACCA+AGG | + | chr2_2:65452950-65452969 | Msa0265230:intron | 30.0% | |
| GAAAAATTACTCTTCACCAA+GGG | + | chr2_2:65452951-65452970 | Msa0265230:intron | 30.0% | |
| TCTTCAAAAAGAAAATCCCT+TGG | - | chr2_2:65452970-65452989 | None:intergenic | 30.0% | |
| ATTGTATCATGGCATTTCTT+TGG | - | chr2_2:65453002-65453021 | None:intergenic | 30.0% | |
| !! | TGTTAATTTGTCTCGAGTAT+GGG | - | chr2_2:65453030-65453049 | None:intergenic | 30.0% |
| !! | TTGTTAATTTGTCTCGAGTA+TGG | - | chr2_2:65453031-65453050 | None:intergenic | 30.0% |
| CGAGACAAATTAACAATAGA+TGG | + | chr2_2:65453035-65453054 | Msa0265230:intron | 30.0% | |
| !! | GGTAGCAAATTGTTTTATTG+TGG | - | chr2_2:65453124-65453143 | None:intergenic | 30.0% |
| ! | GCCACTTTCTATGAATTAAA+TGG | - | chr2_2:65453181-65453200 | None:intergenic | 30.0% |
| ATTCATAGAAAGTGGCAAAT+AGG | + | chr2_2:65453185-65453204 | Msa0265230:intron | 30.0% | |
| !! | TTTTTAAAGATGAAGGGCTT+AGG | + | chr2_2:65453237-65453256 | Msa0265230:intron | 30.0% |
| !! | TTTTAAAGATGAAGGGCTTA+GGG | + | chr2_2:65453238-65453257 | Msa0265230:intron | 30.0% |
| ! | TGCTATTATTAGCTTCATTG+AGG | + | chr2_2:65453578-65453597 | Msa0265230:CDS | 30.0% |
| !!! | CATCAAAAGTGTTTTCCTTT+TGG | + | chr2_2:65453835-65453854 | Msa0265230:intron | 30.0% |
| !!! | TTTTTTTTGAAAGGCGATTG+TGG | + | chr2_2:65453952-65453971 | Msa0265230:intron | 30.0% |
| ! | ATAAGTGTTGCCAAATAAGA+AGG | - | chr2_2:65454056-65454075 | None:intergenic | 30.0% |
| TCAACCTATAATGTATCAGA+GGG | + | chr2_2:65454133-65454152 | Msa0265230:intron | 30.0% | |
| !! | AATTTCCTTGCTTTTGTGTT+CGG | + | chr2_2:65454377-65454396 | Msa0265230:intron | 30.0% |
| !!! | CTTCTGAAATTTTGACTTTG+AGG | - | chr2_2:65454577-65454596 | None:intergenic | 30.0% |
| CTCAAAGTCAAAATTTCAGA+AGG | + | chr2_2:65454575-65454594 | Msa0265230:CDS | 30.0% | |
| ! | ACACACTATAAAGGAGTATA+AGG | - | chr2_2:65454720-65454739 | None:intergenic | 30.0% |
| AAAGAAAGTGACAGAAAATG+AGG | - | chr2_2:65454963-65454982 | None:intergenic | 30.0% | |
| AATATAAAGGAAAGGCTTCA+AGG | - | chr2_2:65455027-65455046 | None:intergenic | 30.0% | |
| CAATAATTTCTTCAGCAATG+GGG | - | chr2_2:65455078-65455097 | None:intergenic | 30.0% | |
| GACAATAATTTCTTCAGCAA+TGG | - | chr2_2:65455080-65455099 | None:intergenic | 30.0% | |
| AAGGATCCAGAAAGAAATTA+TGG | - | chr2_2:65455111-65455130 | None:intergenic | 30.0% | |
| TAACAAGTATGAAGTCAACA+AGG | - | chr2_2:65455159-65455178 | None:intergenic | 30.0% | |
| ! | ACTTCATACTTGTTAGATGT+GGG | + | chr2_2:65455164-65455183 | Msa0265230:intron | 30.0% |
| !! | CAAGCAAAATGAAGCATTTT+TGG | - | chr2_2:65455298-65455317 | None:intergenic | 30.0% |
| ACATAGAACATACAACATTG+AGG | - | chr2_2:65455321-65455340 | None:intergenic | 30.0% | |
| ! | AACTGTGAGGACATTTTATT+TGG | + | chr2_2:65455446-65455465 | Msa0265230:intron | 30.0% |
| ACTCAAATAAACACAAACAC+GGG | - | chr2_2:65455511-65455530 | None:intergenic | 30.0% | |
| ! | ACTCTTTCTTTTTCTGCTAT+TGG | - | chr2_2:65455551-65455570 | None:intergenic | 30.0% |
| AAGATTGAACGTGTGTAAAA+TGG | + | chr2_2:65455656-65455675 | Msa0265230:intron | 30.0% | |
| ! | CGTCTAAAAACATTTTTCAC+TGG | - | chr2_2:65456275-65456294 | None:intergenic | 30.0% |
| !!! | TTAAATTTTTTATTGGGGGG+GGG | - | chr2_2:65456301-65456320 | None:intergenic | 30.0% |
| CTCAAAGGAACTTGAAATAA+AGG | - | chr2_2:65456325-65456344 | None:intergenic | 30.0% | |
| TTGTGTGTGGTTGTTTGATT+TGG | + | chr2_2:65452118-65452137 | Msa0265230:intron | 35.0% | |
| GTGTAAACAAACAAATCAGG+GGG | - | chr2_2:65452161-65452180 | None:intergenic | 35.0% | |
| GGTGTAAACAAACAAATCAG+GGG | - | chr2_2:65452162-65452181 | None:intergenic | 35.0% | |
| !! | GATCTTTCTGTTGACTTGTA+AGG | + | chr2_2:65452229-65452248 | Msa0265230:intron | 35.0% |
| GACTTCAGAGACTAATTTGA+TGG | + | chr2_2:65452313-65452332 | Msa0265230:intron | 35.0% | |
| GGACCAATTTGAGAGTAAAT+TGG | + | chr2_2:65452353-65452372 | Msa0265230:intron | 35.0% | |
| CACCCCTAAAATTTGCAATT+AGG | - | chr2_2:65452436-65452455 | None:intergenic | 35.0% | |
| TTCACCCAATGAAATTGAAG+AGG | - | chr2_2:65452470-65452489 | None:intergenic | 35.0% | |
| TGAGTTCTCATTAGATGTTG+GGG | - | chr2_2:65452573-65452592 | None:intergenic | 35.0% | |
| GATGAGTTCTCATTAGATGT+TGG | - | chr2_2:65452575-65452594 | None:intergenic | 35.0% | |
| GCTTGTGTGGCAATAATAAT+AGG | - | chr2_2:65452597-65452616 | None:intergenic | 35.0% | |
| GATTACAAAATCAGCTTGTG+TGG | - | chr2_2:65452610-65452629 | None:intergenic | 35.0% | |
| TACTGAATTATGAATGGGGT+TGG | + | chr2_2:65452653-65452672 | Msa0265230:intron | 35.0% | |
| AATCCTTTCAGAGGAAAAAG+GGG | - | chr2_2:65452686-65452705 | None:intergenic | 35.0% | |
| CAATCCTTTCAGAGGAAAAA+GGG | - | chr2_2:65452687-65452706 | None:intergenic | 35.0% | |
| ACAATCCTTTCAGAGGAAAA+AGG | - | chr2_2:65452688-65452707 | None:intergenic | 35.0% | |
| !!! | TGTCATCCGATTTTGATTGT+TGG | + | chr2_2:65452776-65452795 | Msa0265230:intron | 35.0% |
| GGACTCAAAGTTAACAAAGT+GGG | - | chr2_2:65452817-65452836 | None:intergenic | 35.0% | |
| TGGACTCAAAGTTAACAAAG+TGG | - | chr2_2:65452818-65452837 | None:intergenic | 35.0% | |
| GCCTTATGATCTTAATCAGA+TGG | + | chr2_2:65452859-65452878 | Msa0265230:intron | 35.0% | |
| !! | TTTTTCAAATGAGATGGAGG+GGG | - | chr2_2:65452937-65452956 | None:intergenic | 35.0% |
| ATAGAAAGTGGCAAATAGGT+GGG | + | chr2_2:65453189-65453208 | Msa0265230:intron | 35.0% | |
| TGAAGCTCTATCAACAATCA+AGG | + | chr2_2:65453533-65453552 | Msa0265230:CDS | 35.0% | |
| GCATTTAAGTCAGAACCATT+GGG | - | chr2_2:65453561-65453580 | None:intergenic | 35.0% | |
| AGCATTTAAGTCAGAACCAT+TGG | - | chr2_2:65453562-65453581 | None:intergenic | 35.0% | |
| ! | TTATTAGCTTCATTGAGGTG+AGG | + | chr2_2:65453583-65453602 | Msa0265230:intron | 35.0% |
| TGGGAGTCATAAAACCTAAT+TGG | - | chr2_2:65453757-65453776 | None:intergenic | 35.0% | |
| !!! | CAAAAGTGTTTTCCTTTTGG+TGG | + | chr2_2:65453838-65453857 | Msa0265230:intron | 35.0% |
| CAAAATACCTTTCCACCAAA+AGG | - | chr2_2:65453853-65453872 | None:intergenic | 35.0% | |
| GTACAGTATGCATTTGATTG+TGG | + | chr2_2:65453918-65453937 | Msa0265230:intron | 35.0% | |
| GGCAACAAATTGATACGAAT+TGG | + | chr2_2:65453973-65453992 | Msa0265230:intron | 35.0% | |
| AAGTTAAAGGTAGTTAGTCG+GGG | - | chr2_2:65454103-65454122 | None:intergenic | 35.0% | |
| GAAGTTAAAGGTAGTTAGTC+GGG | - | chr2_2:65454104-65454123 | None:intergenic | 35.0% | |
| GGAAGTTAAAGGTAGTTAGT+CGG | - | chr2_2:65454105-65454124 | None:intergenic | 35.0% | |
| ! | CTAACTACCTTTAACTTCCT+CGG | + | chr2_2:65454106-65454125 | Msa0265230:intron | 35.0% |
| ! | TAACTACCTTTAACTTCCTC+GGG | + | chr2_2:65454107-65454126 | Msa0265230:intron | 35.0% |
| CTCTGATACATTATAGGTTG+AGG | - | chr2_2:65454134-65454153 | None:intergenic | 35.0% | |
| CTCAACCTATAATGTATCAG+AGG | + | chr2_2:65454132-65454151 | Msa0265230:intron | 35.0% | |
| TAGTCCCTCTGATACATTAT+AGG | - | chr2_2:65454140-65454159 | None:intergenic | 35.0% | |
| CTCTCCGGTGTAAAAATAAA+TGG | - | chr2_2:65454272-65454291 | None:intergenic | 35.0% | |
| !! | ATTTCCTTGCTTTTGTGTTC+GGG | + | chr2_2:65454378-65454397 | Msa0265230:intron | 35.0% |
| ! | GATTCCTTTTTATGGGAGTT+GGG | + | chr2_2:65454403-65454422 | Msa0265230:intron | 35.0% |
| ! | ATTCCTTTTTATGGGAGTTG+GGG | + | chr2_2:65454404-65454423 | Msa0265230:intron | 35.0% |
| ! | AGATCAAAAAGCACGATAGA+TGG | - | chr2_2:65454460-65454479 | None:intergenic | 35.0% |
| CAAAATTTCAGAAGGACACT+AGG | + | chr2_2:65454583-65454602 | Msa0265230:CDS | 35.0% | |
| ACACTAAGCACACACTATAA+AGG | - | chr2_2:65454729-65454748 | None:intergenic | 35.0% | |
| GAGTTAAGTCAGTTTACTCT+TGG | + | chr2_2:65454830-65454849 | Msa0265230:intron | 35.0% | |
| CAATGGGGATCACTAATATA+GGG | - | chr2_2:65455063-65455082 | None:intergenic | 35.0% | |
| GAAAGAAATTATGGAGTAGC+AGG | - | chr2_2:65455102-65455121 | None:intergenic | 35.0% | |
| GCTACTCCATAATTTCTTTC+TGG | + | chr2_2:65455102-65455121 | Msa0265230:intron | 35.0% | |
| GTCAACAAGGTAACATGATA+AGG | - | chr2_2:65455146-65455165 | None:intergenic | 35.0% | |
| ! | GACTTCATACTTGTTAGATG+TGG | + | chr2_2:65455163-65455182 | Msa0265230:intron | 35.0% |
| ATGTCTAACATGAAAATCGC+CGG | - | chr2_2:65455247-65455266 | None:intergenic | 35.0% | |
| ! | CTCTGTTACTTCTAATGGTT+TGG | + | chr2_2:65455351-65455370 | Msa0265230:intron | 35.0% |
| ! | TGTTACTTCTAATGGTTTGG+AGG | + | chr2_2:65455354-65455373 | Msa0265230:intron | 35.0% |
| ! | GTTACTTCTAATGGTTTGGA+GGG | + | chr2_2:65455355-65455374 | Msa0265230:intron | 35.0% |
| !! | GCTCTAGGATTAATTGTAAC+AGG | + | chr2_2:65455387-65455406 | Msa0265230:intron | 35.0% |
| !! | GACATTTTATTTGGAATCCC+AGG | + | chr2_2:65455455-65455474 | Msa0265230:intron | 35.0% |
| ! | TTTATTTGGAATCCCAGGTT+CGG | + | chr2_2:65455460-65455479 | Msa0265230:intron | 35.0% |
| CTCAAATAAACACAAACACG+GGG | - | chr2_2:65455510-65455529 | None:intergenic | 35.0% | |
| GCAAAATTATTAGATGACCC+TGG | - | chr2_2:65455902-65455921 | None:intergenic | 35.0% | |
| ! | TGCATATGATGATGCCATAA+AGG | + | chr2_2:65455919-65455938 | Msa0265230:CDS | 35.0% |
| AAGATATTCAAAGTTTGGGG+AGG | + | chr2_2:65456024-65456043 | Msa0265230:CDS | 35.0% | |
| TCACAGAACCAAAAGAACAA+TGG | - | chr2_2:65456165-65456184 | None:intergenic | 35.0% | |
| !!! | TTGTTCTTTTGGTTCTGTGA+TGG | + | chr2_2:65456165-65456184 | Msa0265230:intron | 35.0% |
| ACTGTTCGCTTCACTTAATT+TGG | + | chr2_2:65456205-65456224 | Msa0265230:exon | 35.0% | |
| !!! | TAAATTTTTTATTGGGGGGG+GGG | - | chr2_2:65456300-65456319 | None:intergenic | 35.0% |
| ! | CACAAAAACATTGGTCTCAA+AGG | - | chr2_2:65456340-65456359 | None:intergenic | 35.0% |
| !!! | GGTCTTTAGTTTTGTGAAAG+TGG | + | chr2_2:65456386-65456405 | Msa0265230:three_prime_UTR | 35.0% |
| TGTCATAACTTGACATGTGT+TGG | + | chr2_2:65456445-65456464 | Msa0265230:three_prime_UTR | 35.0% | |
| ! | GCGGAATTGAATGTTTTTCC+TGG | + | chr2_2:65451798-65451817 | Msa0265230:CDS | 40.0% |
| TCAAAACCCTAAAACTCCCA+AGG | + | chr2_2:65451821-65451840 | Msa0265230:CDS | 40.0% | |
| CAAAACCCTAAAACTCCCAA+GGG | + | chr2_2:65451822-65451841 | Msa0265230:CDS | 40.0% | |
| ! | GTTTACCCTTGGGAGTTTTA+GGG | - | chr2_2:65451830-65451849 | None:intergenic | 40.0% |
| ! | GCATTGTCATCATTCTGAGA+AGG | - | chr2_2:65452017-65452036 | None:intergenic | 40.0% |
| GGGGAAAAGGATTATACTGA+GGG | - | chr2_2:65452052-65452071 | None:intergenic | 40.0% | |
| AGGGGAAAAGGATTATACTG+AGG | - | chr2_2:65452053-65452072 | None:intergenic | 40.0% | |
| ATTTGTGCGCAAATTGTGTG+TGG | + | chr2_2:65452105-65452124 | Msa0265230:intron | 40.0% | |
| !! | TGTGGTTGTTTGATTTGGAG+TGG | + | chr2_2:65452123-65452142 | Msa0265230:intron | 40.0% |
| AAACAAATCAGGGGGCAAAT+TGG | - | chr2_2:65452153-65452172 | None:intergenic | 40.0% | |
| TTCGGCCTCTTCAATTTCAT+TGG | + | chr2_2:65452462-65452481 | Msa0265230:intron | 40.0% | |
| TCGGCCTCTTCAATTTCATT+GGG | + | chr2_2:65452463-65452482 | Msa0265230:intron | 40.0% | |
| AATTGGCACGTACCAATTCA+GGG | - | chr2_2:65453156-65453175 | None:intergenic | 40.0% | |
| CATAGAAAGTGGCAAATAGG+TGG | + | chr2_2:65453188-65453207 | Msa0265230:intron | 40.0% | |
| TCAACAATCAAGGATCCCAA+TGG | + | chr2_2:65453543-65453562 | Msa0265230:CDS | 40.0% | |
| TCACAGCAAGTCAAGCATTT+GGG | - | chr2_2:65453776-65453795 | None:intergenic | 40.0% | |
| ATCACAGCAAGTCAAGCATT+TGG | - | chr2_2:65453777-65453796 | None:intergenic | 40.0% | |
| ! | GTGTTTTCCTTTTGGTGGAA+AGG | + | chr2_2:65453843-65453862 | Msa0265230:intron | 40.0% |
| ATTGGAATTGCAGTACTGTG+AGG | + | chr2_2:65453991-65454010 | Msa0265230:intron | 40.0% | |
| AAGAAGGAAGGAGAGAGTTT+GGG | - | chr2_2:65454040-65454059 | None:intergenic | 40.0% | |
| TAAGAAGGAAGGAGAGAGTT+TGG | - | chr2_2:65454041-65454060 | None:intergenic | 40.0% | |
| CTCTCTCCTTCCTTCTTATT+TGG | + | chr2_2:65454043-65454062 | Msa0265230:intron | 40.0% | |
| GTGTTGCCAAATAAGAAGGA+AGG | - | chr2_2:65454052-65454071 | None:intergenic | 40.0% | |
| CAAAGCGACTGATATTGAAC+TGG | - | chr2_2:65454249-65454268 | None:intergenic | 40.0% | |
| !! | TTCGGGTGGATTCCTTTTTA+TGG | + | chr2_2:65454395-65454414 | Msa0265230:intron | 40.0% |
| !! | TCGGGTGGATTCCTTTTTAT+GGG | + | chr2_2:65454396-65454415 | Msa0265230:intron | 40.0% |
| ! | GGATTCCTTTTTATGGGAGT+TGG | + | chr2_2:65454402-65454421 | Msa0265230:intron | 40.0% |
| TGCGAAGTAAGCTACATTTC+TGG | - | chr2_2:65454437-65454456 | None:intergenic | 40.0% | |
| CACTAGGTGCAAAGTTAAGA+AGG | + | chr2_2:65454599-65454618 | Msa0265230:CDS | 40.0% | |
| TTAAGAAGGCTTGTCAGTCA+AGG | + | chr2_2:65454613-65454632 | Msa0265230:CDS | 40.0% | |
| TAAGAAGGCTTGTCAGTCAA+GGG | + | chr2_2:65454614-65454633 | Msa0265230:CDS | 40.0% | |
| CAGTCAAGGGAAACTTGAAA+AGG | + | chr2_2:65454627-65454646 | Msa0265230:CDS | 40.0% | |
| GATCCACTGTATTCCAAAGT+CGG | + | chr2_2:65454872-65454891 | Msa0265230:intron | 40.0% | |
| !! | TAACCGACTTTGGAATACAG+TGG | - | chr2_2:65454878-65454897 | None:intergenic | 40.0% |
| !! | ACGCATTGATTAACCGACTT+TGG | - | chr2_2:65454888-65454907 | None:intergenic | 40.0% |
| GCAATGGGGATCACTAATAT+AGG | - | chr2_2:65455064-65455083 | None:intergenic | 40.0% | |
| GGAGGGAAAAAAATTGCTCT+AGG | + | chr2_2:65455372-65455391 | Msa0265230:intron | 40.0% | |
| ACCACTTGACTGTAACAACA+GGG | - | chr2_2:65455424-65455443 | None:intergenic | 40.0% | |
| AACCACTTGACTGTAACAAC+AGG | - | chr2_2:65455425-65455444 | None:intergenic | 40.0% | |
| AGTCAAGTGGTTTAACTGTG+AGG | + | chr2_2:65455433-65455452 | Msa0265230:intron | 40.0% | |
| AATAAACACAAACACGGGGA+GGG | - | chr2_2:65455506-65455525 | None:intergenic | 40.0% | |
| AAATAAACACAAACACGGGG+AGG | - | chr2_2:65455507-65455526 | None:intergenic | 40.0% | |
| !!! | TTGAGTATGTTTTGGCCACT+AGG | + | chr2_2:65455525-65455544 | Msa0265230:intron | 40.0% |
| !! | TTTTTCTGCTATTGGCCTAG+TGG | - | chr2_2:65455543-65455562 | None:intergenic | 40.0% |
| ! | CACGTTCAATCTTTCTAGCA+TGG | - | chr2_2:65455649-65455668 | None:intergenic | 40.0% |
| ! | TGTAACCATTTTGTACCTGC+AGG | - | chr2_2:65455805-65455824 | None:intergenic | 40.0% |
| TACAAGATAAAGGACACCTC+AGG | + | chr2_2:65455821-65455840 | Msa0265230:CDS | 40.0% | |
| ACAAGATAAAGGACACCTCA+GGG | + | chr2_2:65455822-65455841 | Msa0265230:CDS | 40.0% | |
| ACCACCTACACCAAAAGAAA+TGG | + | chr2_2:65455871-65455890 | Msa0265230:CDS | 40.0% | |
| !! | TCCATTTCTTTTGGTGTAGG+TGG | - | chr2_2:65455875-65455894 | None:intergenic | 40.0% |
| !! | AGGTCCATTTCTTTTGGTGT+AGG | - | chr2_2:65455878-65455897 | None:intergenic | 40.0% |
| AATTATTAGATGACCCTGGC+AGG | - | chr2_2:65455898-65455917 | None:intergenic | 40.0% | |
| AGTTTCGGAAGCTTCCTTTA+TGG | - | chr2_2:65455936-65455955 | None:intergenic | 40.0% | |
| !! | CGCGGAGAATAAGTCATTTT+TGG | + | chr2_2:65455976-65455995 | Msa0265230:CDS | 40.0% |
| !!! | GGAGTTTTAGGGTTTTGACC+AGG | - | chr2_2:65451819-65451838 | None:intergenic | 45.0% |
| ! | GGTTTACCCTTGGGAGTTTT+AGG | - | chr2_2:65451831-65451850 | None:intergenic | 45.0% |
| ! | TGTCATCATTCTGAGAAGGC+TGG | - | chr2_2:65452013-65452032 | None:intergenic | 45.0% |
| TGCAATTAGGCAAAAGACCC+TGG | - | chr2_2:65452423-65452442 | None:intergenic | 45.0% | |
| ! | TGTCCCCTTTTTCCTCTGAA+AGG | + | chr2_2:65452680-65452699 | Msa0265230:intron | 45.0% |
| ! | AGGAAGCACGAATCACATGT+TGG | - | chr2_2:65452729-65452748 | None:intergenic | 45.0% |
| TGCACGATTGCATGAGTACA+TGG | + | chr2_2:65452896-65452915 | Msa0265230:intron | 45.0% | |
| ! | GATGGAGGGGGTTTTCAATT+TGG | - | chr2_2:65452925-65452944 | None:intergenic | 45.0% |
| !! | GATGGGGTTTCTCTAAAACC+CGG | + | chr2_2:65453053-65453072 | Msa0265230:intron | 45.0% |
| !! | TCTCTAAAACCCGGAATTCC+TGG | + | chr2_2:65453062-65453081 | Msa0265230:intron | 45.0% |
| ACTCCATTTGCCAGGAATTC+CGG | - | chr2_2:65453075-65453094 | None:intergenic | 45.0% | |
| ACCAATTCAGGGTTCAAGCT+GGG | - | chr2_2:65453145-65453164 | None:intergenic | 45.0% | |
| TACCAATTCAGGGTTCAAGC+TGG | - | chr2_2:65453146-65453165 | None:intergenic | 45.0% | |
| GAATTGGCACGTACCAATTC+AGG | - | chr2_2:65453157-65453176 | None:intergenic | 45.0% | |
| AGATGAAGGGCTTAGGGTTT+AGG | + | chr2_2:65453244-65453263 | Msa0265230:intron | 45.0% | |
| TTGAGGTGAGGTGACTTTCA+TGG | + | chr2_2:65453595-65453614 | Msa0265230:intron | 45.0% | |
| TGAGGTGAGGTGACTTTCAT+GGG | + | chr2_2:65453596-65453615 | Msa0265230:intron | 45.0% | |
| TGAATTGCGGCTGTCCAATT+AGG | + | chr2_2:65453740-65453759 | Msa0265230:intron | 45.0% | |
| AGGAGAGAGTTTGGGCAATT+GGG | - | chr2_2:65454032-65454051 | None:intergenic | 45.0% | |
| AAGGAGAGAGTTTGGGCAAT+TGG | - | chr2_2:65454033-65454052 | None:intergenic | 45.0% | |
| GGGATCTTCTTGAGATGGTT+GGG | - | chr2_2:65454083-65454102 | None:intergenic | 45.0% | |
| AGCGACTGATATTGAACTGG+TGG | - | chr2_2:65454246-65454265 | None:intergenic | 45.0% | |
| AGTCCCCAACTCCCATAAAA+AGG | - | chr2_2:65454410-65454429 | None:intergenic | 45.0% | |
| ! | TTTTATGGGAGTTGGGGACT+TGG | + | chr2_2:65454410-65454429 | Msa0265230:intron | 45.0% |
| TTTATGGGAGTTGGGGACTT+GGG | + | chr2_2:65454411-65454430 | Msa0265230:intron | 45.0% | |
| CATGTTAGACATGCGTCTGT+TGG | + | chr2_2:65455255-65455274 | Msa0265230:intron | 45.0% | |
| CACTTGACTGTAACAACAGG+GGG | - | chr2_2:65455422-65455441 | None:intergenic | 45.0% | |
| CCACTTGACTGTAACAACAG+GGG | - | chr2_2:65455423-65455442 | None:intergenic | 45.0% | |
| ATAAACACAAACACGGGGAG+GGG | - | chr2_2:65455505-65455524 | None:intergenic | 45.0% | |
| ACTAATCAGTCATCACCTGC+AGG | + | chr2_2:65455787-65455806 | Msa0265230:intron | 45.0% | |
| CATCACCTGCAGGTACAAAA+TGG | + | chr2_2:65455797-65455816 | Msa0265230:intron | 45.0% | |
| CAAGATAAAGGACACCTCAG+GGG | + | chr2_2:65455823-65455842 | Msa0265230:CDS | 45.0% | |
| AAGATAAAGGACACCTCAGG+GGG | + | chr2_2:65455824-65455843 | Msa0265230:CDS | 45.0% | |
| CAAAAGAAATGGACCTGCCA+GGG | + | chr2_2:65455882-65455901 | Msa0265230:CDS | 45.0% | |
| AAGTCTGCAGGCTAGAGTTT+CGG | - | chr2_2:65455951-65455970 | None:intergenic | 45.0% | |
| !!! | TCTTTTGGTTCTGTGATGGC+AGG | + | chr2_2:65456169-65456188 | Msa0265230:intron | 45.0% |
| ACTCCCAAGGGTAAACCATC+TGG | + | chr2_2:65451834-65451853 | Msa0265230:CDS | 50.0% | |
| CTCCCAAGGGTAAACCATCT+GGG | + | chr2_2:65451835-65451854 | Msa0265230:CDS | 50.0% | |
| GACCCAGATGGTTTACCCTT+GGG | - | chr2_2:65451840-65451859 | None:intergenic | 50.0% | |
| AGACCCAGATGGTTTACCCT+TGG | - | chr2_2:65451841-65451860 | None:intergenic | 50.0% | |
| GGAGAAGGAGTAGCATTGCT+TGG | - | chr2_2:65451873-65451892 | None:intergenic | 50.0% | |
| GGTGTAGCAGCAACATTGAC+CGG | - | chr2_2:65451957-65451976 | None:intergenic | 50.0% | |
| CTCAAGCTCAGACTCCGATT+CGG | + | chr2_2:65451976-65451995 | Msa0265230:CDS | 50.0% | |
| TGGCTAGTAGGAGTCCGAAT+CGG | - | chr2_2:65451993-65452012 | None:intergenic | 50.0% | |
| ! | TTCTGAGAAGGCTGGCTAGT+AGG | - | chr2_2:65452005-65452024 | None:intergenic | 50.0% |
| AACCCGGAATTCCTGGCAAA+TGG | + | chr2_2:65453069-65453088 | Msa0265230:intron | 50.0% | |
| CTCCATTTGCCAGGAATTCC+GGG | - | chr2_2:65453074-65453093 | None:intergenic | 50.0% | |
| GGAATTCCTGGCAAATGGAG+TGG | + | chr2_2:65453074-65453093 | Msa0265230:intron | 50.0% | |
| ACCCAGCTTGAACCCTGAAT+TGG | + | chr2_2:65453141-65453160 | Msa0265230:intron | 50.0% | |
| GAGGTGAGGTGACTTTCATG+GGG | + | chr2_2:65453597-65453616 | Msa0265230:intron | 50.0% | |
| AGGTGAGGTGACTTTCATGG+GGG | + | chr2_2:65453598-65453617 | Msa0265230:intron | 50.0% | |
| AGAGAGTTTGGGCAATTGGG+AGG | - | chr2_2:65454029-65454048 | None:intergenic | 50.0% | |
| GGGGATCTTCTTGAGATGGT+TGG | - | chr2_2:65454084-65454103 | None:intergenic | 50.0% | |
| AGTCGGGGATCTTCTTGAGA+TGG | - | chr2_2:65454088-65454107 | None:intergenic | 50.0% | |
| TGAGGTCCCGAGGAAGTTAA+AGG | - | chr2_2:65454116-65454135 | None:intergenic | 50.0% | |
| ! | CATTATAGGTTGAGGTCCCG+AGG | - | chr2_2:65454126-65454145 | None:intergenic | 50.0% |
| !! | TCCTTGCTTTTGTGTTCGGG+TGG | + | chr2_2:65454381-65454400 | Msa0265230:intron | 50.0% |
| TCCACCCGAACACAAAAGCA+AGG | - | chr2_2:65454385-65454404 | None:intergenic | 50.0% | |
| ! | GCAAGTTGTGCTTTTGCTGC+AGG | - | chr2_2:65454555-65454574 | None:intergenic | 50.0% |
| CCCCTGTTGTTACAGTCAAG+TGG | + | chr2_2:65455420-65455439 | Msa0265230:intron | 50.0% | |
| TAAACACAAACACGGGGAGG+GGG | - | chr2_2:65455504-65455523 | None:intergenic | 50.0% | |
| !! | TCTTGAGTCCGTGTTGCTTG+AGG | + | chr2_2:65455582-65455601 | Msa0265230:intron | 50.0% |
| CTCTCCTTCCTCAAGCAACA+CGG | - | chr2_2:65455593-65455612 | None:intergenic | 50.0% | |
| !! | GTGTTGCTTGAGGAAGGAGA+GGG | + | chr2_2:65455592-65455611 | Msa0265230:intron | 50.0% |
| ! | TGTTGCTTGAGGAAGGAGAG+GGG | + | chr2_2:65455593-65455612 | Msa0265230:intron | 50.0% |
| AAGGAGAGGGGGATAGAGAA+GGG | + | chr2_2:65455605-65455624 | Msa0265230:intron | 50.0% | |
| AGATAAAGGACACCTCAGGG+GGG | + | chr2_2:65455825-65455844 | Msa0265230:CDS | 50.0% | |
| ! | CCTGGCAGGTCCATTTCTTT+TGG | - | chr2_2:65455884-65455903 | None:intergenic | 50.0% |
| CCAAAAGAAATGGACCTGCC+AGG | + | chr2_2:65455881-65455900 | Msa0265230:CDS | 50.0% | |
| !! | TTTTGGCTACTGCAGCAGTC+AGG | + | chr2_2:65455993-65456012 | Msa0265230:CDS | 50.0% |
| TTTGGCTACTGCAGCAGTCA+GGG | + | chr2_2:65455994-65456013 | Msa0265230:CDS | 50.0% | |
| TCTGTGATGGCAGGTATGCT+CGG | + | chr2_2:65456178-65456197 | Msa0265230:intron | 50.0% | |
| GGAGTAGCATTGCTTGGAGC+AGG | - | chr2_2:65451867-65451886 | None:intergenic | 55.0% | |
| CGAATCGGAGTCTGAGCTTG+AGG | - | chr2_2:65451978-65451997 | None:intergenic | 55.0% | |
| GTCACTCCACTCCATTTGCC+AGG | - | chr2_2:65453083-65453102 | None:intergenic | 55.0% | |
| !! | GAGTCCGTGTTGCTTGAGGA+AGG | + | chr2_2:65455586-65455605 | Msa0265230:intron | 55.0% |
| !! | CGTGTTGCTTGAGGAAGGAG+AGG | + | chr2_2:65455591-65455610 | Msa0265230:intron | 55.0% |
| GTTGCTTGAGGAAGGAGAGG+GGG | + | chr2_2:65455594-65455613 | Msa0265230:intron | 55.0% | |
| GAAGGAGAGGGGGATAGAGA+AGG | + | chr2_2:65455604-65455623 | Msa0265230:intron | 55.0% | |
| GATAAAGGACACCTCAGGGG+GGG | + | chr2_2:65455826-65455845 | Msa0265230:CDS | 55.0% | |
| GGAGCAGGAGAAGACCCAGA+TGG | - | chr2_2:65451852-65451871 | None:intergenic | 60.0% | |
| ! | GGAGTACCAGGAGCAGGAGA+CGG | - | chr2_2:65451894-65451913 | None:intergenic | 60.0% |
| !! | GCAGAAGCAGCAGGAGTACC+AGG | - | chr2_2:65451906-65451925 | None:intergenic | 60.0% |
| ! | GGTACTCCTGCTGCTTCTGC+TGG | + | chr2_2:65451906-65451925 | Msa0265230:CDS | 60.0% |
| ! | GGAGTACCAGCAGAAGCAGC+AGG | - | chr2_2:65451915-65451934 | None:intergenic | 60.0% |
| TGCTGCTGCTGCTGTTGCTC+CGG | + | chr2_2:65451935-65451954 | Msa0265230:CDS | 60.0% | |
| ! | TGGAATCCCAGGTTCGGTCC+AGG | + | chr2_2:65455466-65455485 | Msa0265230:intron | 60.0% |
| ! | GGAATCCCAGGTTCGGTCCA+GGG | + | chr2_2:65455467-65455486 | Msa0265230:intron | 60.0% |
| ! | AGGGGGAAGTTTGGTGACCC+TGG | - | chr2_2:65455487-65455506 | None:intergenic | 60.0% |
| AACACGGGGAGGGGGAAGTT+TGG | - | chr2_2:65455496-65455515 | None:intergenic | 60.0% | |
| AGCTAACTTCACCCCCCCTG+AGG | - | chr2_2:65455840-65455859 | None:intergenic | 60.0% | |
| !! | AGCCTGCAGACTTGCTGACG+CGG | + | chr2_2:65455958-65455977 | Msa0265230:CDS | 60.0% |
| CCAGGAGCAGGAGACGGAGA+AGG | - | chr2_2:65451888-65451907 | None:intergenic | 65.0% | |
| CCTTCTCCGTCTCCTGCTCC+TGG | + | chr2_2:65451885-65451904 | Msa0265230:CDS | 65.0% | |
| !! | GCAGCAGGAGTACCAGGAGC+AGG | - | chr2_2:65451900-65451919 | None:intergenic | 65.0% |
| GGAGCAACAGCAGCAGCAGC+AGG | - | chr2_2:65451936-65451955 | None:intergenic | 65.0% | |
| GGTGACCCTGGACCGAACCT+GGG | - | chr2_2:65455475-65455494 | None:intergenic | 65.0% | |
| TGGTGACCCTGGACCGAACC+TGG | - | chr2_2:65455476-65455495 | None:intergenic | 65.0% | |
| CTCCGCGTCAGCAAGTCTGC+AGG | - | chr2_2:65455963-65455982 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 65451736 | 65456577 | 65451736 | ID=Msa0265230;Name=Msa0265230 |
| chr2_2 | mRNA | 65451736 | 65456577 | 65451736 | ID=Msa0265230-mRNA-1;Parent=Msa0265230;Name=Msa0265230-mRNA-1;_AED=0.06;_eAED=0.06;_QI=59|1|1|1|1|1|5|355|249 |
| chr2_2 | exon | 65451736 | 65452054 | 65451736 | ID=Msa0265230-mRNA-1:exon:20551;Parent=Msa0265230-mRNA-1 |
| chr2_2 | exon | 65453515 | 65453599 | 65453515 | ID=Msa0265230-mRNA-1:exon:20552;Parent=Msa0265230-mRNA-1 |
| chr2_2 | exon | 65454559 | 65454648 | 65454559 | ID=Msa0265230-mRNA-1:exon:20553;Parent=Msa0265230-mRNA-1 |
| chr2_2 | exon | 65455809 | 65456091 | 65455809 | ID=Msa0265230-mRNA-1:exon:20554;Parent=Msa0265230-mRNA-1 |
| chr2_2 | exon | 65456191 | 65456577 | 65456191 | ID=Msa0265230-mRNA-1:exon:20555;Parent=Msa0265230-mRNA-1 |
| chr2_2 | five_prime_UTR | 65451736 | 65451794 | 65451736 | ID=Msa0265230-mRNA-1:five_prime_utr;Parent=Msa0265230-mRNA-1 |
| chr2_2 | CDS | 65451795 | 65452054 | 65451795 | ID=Msa0265230-mRNA-1:cds;Parent=Msa0265230-mRNA-1 |
| chr2_2 | CDS | 65453515 | 65453599 | 65453515 | ID=Msa0265230-mRNA-1:cds;Parent=Msa0265230-mRNA-1 |
| chr2_2 | CDS | 65454559 | 65454648 | 65454559 | ID=Msa0265230-mRNA-1:cds;Parent=Msa0265230-mRNA-1 |
| chr2_2 | CDS | 65455809 | 65456091 | 65455809 | ID=Msa0265230-mRNA-1:cds;Parent=Msa0265230-mRNA-1 |
| chr2_2 | CDS | 65456191 | 65456222 | 65456191 | ID=Msa0265230-mRNA-1:cds;Parent=Msa0265230-mRNA-1 |
| chr2_2 | three_prime_UTR | 65456223 | 65456577 | 65456223 | ID=Msa0265230-mRNA-1:three_prime_utr;Parent=Msa0265230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
