AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529670 MtrunA17_Chr4g0000541 99.281 278 2 0 1 278 487 764 0.0 576
Msa0529670 MtrunA17_Chr6g0471001 58.647 266 105 3 1 266 500 760 4.21e-102 314
Msa0529670 MtrunA17_Chr1g0210011 57.371 251 97 3 1 245 411 657 5.75e-84 265
Msa0529670 MtrunA17_Chr4g0043561 42.000 250 135 4 2 244 465 711 2.00e-55 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529670 AT5G49830.1 75.090 277 66 2 1 277 478 751 9.90e-134 396
Msa0529670 AT5G49830.3 75.090 277 66 2 1 277 509 782 2.15e-133 396
Msa0529670 AT5G49830.2 75.090 277 66 2 1 277 540 813 8.98e-133 395
Msa0529670 AT1G10385.1 61.765 272 99 4 1 271 486 753 3.43e-107 327
Msa0529670 AT1G10180.1 39.506 243 144 2 2 244 461 700 9.95e-53 183

Find 173 sgRNAs with CRISPR-Local

Find 1128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGCTTTGAGGATTC+TGG 0.189121 4_1:-3400871 Msa0529670:five_prime_UTR
AACAGAAGCATTTGCTCTTC+TGG 0.230386 4_1:-3401861 Msa0529670:five_prime_UTR
CCTTACAGGGATCTTGGTTT+AGG 0.235745 4_1:+3400737 None:intergenic
TTCTTCTTCTCCATTGATTC+TGG 0.235925 4_1:+3400888 None:intergenic
AGTTGAGTTTCCTGATCTTT+TGG 0.240158 4_1:-3402347 Msa0529670:five_prime_UTR
AAACATATCTGCTGCTATAT+TGG 0.247414 4_1:+3399323 None:intergenic
CTCTCCCCGTTTATTTCCTT+TGG 0.259208 4_1:+3397592 None:intergenic
TTTCAGAAGATCAGAGCTTT+TGG 0.266073 4_1:-3399236 Msa0529670:CDS
TCTACGGTTATCATCCTTAC+AGG 0.273444 4_1:+3400723 None:intergenic
ATTGGACTGTACTAATTTAC+AGG 0.283078 4_1:+3397482 None:intergenic
CTTACAGGGATCTTGGTTTA+GGG 0.286532 4_1:+3400738 None:intergenic
CTCCTCCATTCCCGTTGTTC+AGG 0.299705 4_1:+3400673 None:intergenic
TGCCCATCGCTTCAATTTGA+TGG 0.308622 4_1:-3401540 Msa0529670:five_prime_UTR
CAACATTGAATGAATTGAAT+TGG 0.310488 4_1:+3406633 None:intergenic
TCGCTTCAATTTGATGGTTC+AGG 0.316321 4_1:-3401534 Msa0529670:intron
CTATGGCTGCTGCTGATGAT+TGG 0.319105 4_1:-3401637 Msa0529670:five_prime_UTR
GCTAGCTAATGCCTCATTAC+TGG 0.329413 4_1:-3400800 Msa0529670:CDS
TCTCCTTCGTGATCTTGTTA+TGG 0.329633 4_1:-3406539 Msa0529670:five_prime_UTR
GAGGAAGGGCCAAGGCCTTT+AGG 0.330967 4_1:-3399204 Msa0529670:CDS
CCAATCTATCATGAAATTAC+TGG 0.335302 4_1:-3397464 Msa0529670:three_prime_UTR
TCATTAAACCATTCATCTTC+AGG 0.346274 4_1:+3397652 None:intergenic
GCGGCGAGTGTTAAAGAAAA+TGG 0.352110 4_1:-3406472 Msa0529670:five_prime_UTR
GTTTAGGGAGGAGAGCTTCA+TGG 0.358778 4_1:+3400753 None:intergenic
AGCTGACATGTATATAAGTA+TGG 0.372642 4_1:-3400554 Msa0529670:CDS
TAGCTAGCAGTGCAATCTGC+TGG 0.380139 4_1:+3400815 None:intergenic
AATTGCAAAACATACCTATA+CGG 0.393334 4_1:+3397803 None:intergenic
GAATTGTGAATGAAATTATC+AGG 0.397966 4_1:-3397862 Msa0529670:CDS
CCAGTAATTTCATGATAGAT+TGG 0.398861 4_1:+3397464 None:intergenic
TATCATCCTTACAGGGATCT+TGG 0.404318 4_1:+3400731 None:intergenic
AGTCACGCGCACTGTGTGTT+TGG 0.404366 4_1:+3406681 None:intergenic
CGGCCGTCAAACACCTCATA+TGG 0.413368 4_1:-3402013 Msa0529670:five_prime_UTR
TACTGCAGCTCTAGCACAAC+TGG 0.415141 4_1:-3401981 Msa0529670:five_prime_UTR
TATGGCTGCTGCTGATGATT+GGG 0.419906 4_1:-3401636 Msa0529670:five_prime_UTR
TGTTCAATTTCTAGCTAGAT+TGG 0.419969 4_1:-3406609 Msa0529670:five_prime_UTR
AGGTTGCTTGAGTGGATAGT+AGG 0.422298 4_1:+3402494 None:intergenic
ATGTTAATTAACGCAATAAT+CGG 0.422821 4_1:+3397441 None:intergenic
CCAAGGCCTTTAGGTCCTCT+TGG 0.424024 4_1:-3399195 Msa0529670:CDS
GGAAAACCAAAGGAAATAAA+CGG 0.424170 4_1:-3397598 Msa0529670:CDS
AGTTCAGATCCACGGGTAGA+AGG 0.425091 4_1:+3402142 None:intergenic
AATCTGCTGGGCTTCAGTTT+CGG 0.426706 4_1:+3400828 None:intergenic
TGAAAGCTCACCTTCTAAAT+CGG 0.432039 4_1:+3402528 None:intergenic
GAAAACCAAAGGAAATAAAC+GGG 0.435327 4_1:-3397597 Msa0529670:CDS
GCTTATACAGGACTTCTTTG+AGG 0.435586 4_1:-3401009 Msa0529670:intron
AGCAACCTTGATACATGGTT+TGG 0.436211 4_1:-3402479 Msa0529670:five_prime_UTR
CATATCCTCCTAATGCTAAT+CGG 0.438507 4_1:-3401607 Msa0529670:five_prime_UTR
GCCTTTCTGTGGTTCTTCTA+CGG 0.438652 4_1:+3400707 None:intergenic
CATTTGCTCTTCTGGTGAAA+AGG 0.441118 4_1:-3401853 Msa0529670:five_prime_UTR
CCGGTCTGCCGATTAGCATT+AGG 0.441791 4_1:+3401599 None:intergenic
AAATCGTCATCCTGAACAAC+GGG 0.443953 4_1:-3400683 Msa0529670:CDS
AAGGAGATATCCGATTTAGA+AGG 0.455997 4_1:-3402538 Msa0529670:five_prime_UTR
AATACCGTCACCGCTTGGTT+AGG 0.456660 4_1:-3406733 None:intergenic
AGGTCCTCTTGGTCTACAAC+AGG 0.457183 4_1:-3399184 Msa0529670:intron
TGAAATATGTCAAGATGCTA+TGG 0.457337 4_1:-3397632 Msa0529670:CDS
GACTCGTGGGTTCAGTTGAC+AGG 0.457851 4_1:-3400648 Msa0529670:CDS
CACCTCTTCTCTCAATGATA+AGG 0.462515 4_1:-3406380 Msa0529670:intron
ACAAGCTGCAAGTGACTCAT+TGG 0.462838 4_1:-3401942 Msa0529670:five_prime_UTR
AAAAGCACTACCAGAATCAA+TGG 0.468783 4_1:-3400898 Msa0529670:five_prime_UTR
CCAAGAGGACCTAAAGGCCT+TGG 0.469828 4_1:+3399195 None:intergenic
ATAGCAGCAGATATGTTTGT+AGG 0.476239 4_1:-3399318 Msa0529670:CDS
CAACAGGGATGGATCCGTAT+AGG 0.477278 4_1:-3397817 Msa0529670:intron
AAATATCAGACCTGGACAAA+TGG 0.478669 4_1:-3402372 Msa0529670:five_prime_UTR
GATGCTATGGAAAGATTAAG+TGG 0.486477 4_1:-3397619 Msa0529670:CDS
AGCTAGCAGTGCAATCTGCT+GGG 0.487168 4_1:+3400816 None:intergenic
GCTTTGGCCGCTCTTGATGA+AGG 0.487852 4_1:-3402292 Msa0529670:five_prime_UTR
CAAACGCAAGCCAAATTTGA+CGG 0.488013 4_1:+3397298 None:intergenic
CCTCCATATGAGGTGTTTGA+CGG 0.488508 4_1:+3402010 None:intergenic
TTGATACATGGTTTGGCCGA+TGG 0.489371 4_1:-3402472 Msa0529670:five_prime_UTR
ACCTCTGCTTAGTATGCAGT+TGG 0.491714 4_1:-3400979 Msa0529670:five_prime_UTR
AGCAGATATGTTTGTAGGGA+GGG 0.495602 4_1:-3399313 Msa0529670:CDS
ACAAGAGAGTACTGCTGCTA+TGG 0.495618 4_1:-3401654 Msa0529670:five_prime_UTR
TTCTAAATCGGATATCTCCT+TGG 0.496112 4_1:+3402540 None:intergenic
TGCAGAGACAGAAGTAAAGA+TGG 0.497612 4_1:+3402226 None:intergenic
AAGAGAACATCCAAAAGATC+AGG 0.497714 4_1:+3402337 None:intergenic
TTGGCTTCATCAGCAGCTGC+AGG 0.498943 4_1:-3401824 Msa0529670:five_prime_UTR
TGGAGAAGAAGAAAGCTTTG+AGG 0.502847 4_1:-3400878 Msa0529670:five_prime_UTR
AAGGCGAGTAGAAGAAGCTT+TGG 0.503692 4_1:-3402308 Msa0529670:five_prime_UTR
AGTATATGCTCCTCCATATG+AGG 0.506025 4_1:+3402000 None:intergenic
TGGATGTTCTCTTGGCTGAA+AGG 0.507358 4_1:-3402327 Msa0529670:five_prime_UTR
GCAGTTGGGAGGACAAGCTC+TGG 0.512635 4_1:-3400964 Msa0529670:five_prime_UTR
ATTATTGCGTTAATTAACAT+TGG 0.513415 4_1:-3397438 Msa0529670:three_prime_UTR
TTTCATAAAACTGAACAGAA+TGG 0.516066 4_1:-3399346 Msa0529670:CDS
GACACTTCTGCGCATCTCCT+CGG 0.517265 4_1:+3404678 None:intergenic
GTCATCCTGAACAACGGGAA+TGG 0.517673 4_1:-3400678 Msa0529670:CDS
TCCATAATACCGTCACCGCT+TGG 0.518500 4_1:-3406738 None:intergenic
TTGAAATGCTGTTGTACTAC+CGG 0.521142 4_1:+3401580 None:intergenic
GAAATGCGGATGAAGTTGAA+TGG 0.522687 4_1:-3400528 Msa0529670:CDS
CGATGATGAAGTCATCTTCA+CGG 0.524587 4_1:-3406507 Msa0529670:five_prime_UTR
GAACCATCAAATTGAAGCGA+TGG 0.527818 4_1:+3401537 None:intergenic
AAACGCAAGCCAAATTTGAC+GGG 0.528414 4_1:+3397299 None:intergenic
GAGTGTGTTCAAATAGCATT+GGG 0.528713 4_1:-3401782 Msa0529670:five_prime_UTR
TCTGGTGAAAAGGCATGCAT+TGG 0.529675 4_1:-3401843 Msa0529670:five_prime_UTR
ATGTATCAAGGTTGCTTGAG+TGG 0.531435 4_1:+3402486 None:intergenic
TTCTTCTGAACTTGTGATGT+GGG 0.533142 4_1:-3401894 Msa0529670:five_prime_UTR
CTAACTATGCAGCCTTCATA+CGG 0.533378 4_1:-3404651 Msa0529670:intron
TGACAAATACCGACCGTTGG+AGG 0.534564 4_1:+3397898 None:intergenic
AACACAAACTAACCGTATGA+AGG 0.541012 4_1:+3404639 None:intergenic
CAGGACTTCTTTGAGGATGT+AGG 0.541656 4_1:-3401002 Msa0529670:five_prime_UTR
ATTCTTCTGAACTTGTGATG+TGG 0.543682 4_1:-3401895 Msa0529670:five_prime_UTR
TAGCAGCAGATATGTTTGTA+GGG 0.544112 4_1:-3399317 Msa0529670:CDS
ATCGGCCAAACCATGTATCA+AGG 0.549441 4_1:+3402474 None:intergenic
TCGTGATCTTGTTATGGCGG+CGG 0.551537 4_1:-3406533 Msa0529670:five_prime_UTR
AATGGAGTTAAGCTTGAAGA+AGG 0.551779 4_1:-3406454 Msa0529670:five_prime_UTR
AGTATAACATGCAAAGTCTC+CGG 0.553019 4_1:-3402033 Msa0529670:five_prime_UTR
CTTATCATTGAGAGAAGAGG+TGG 0.553048 4_1:+3406381 None:intergenic
ACTCAAGCAACCTTGATACA+TGG 0.553619 4_1:-3402484 Msa0529670:five_prime_UTR
TAAATGTCATAGAACTTCCA+AGG 0.554039 4_1:-3402557 Msa0529670:intron
AGTGGATAGTAGGTTTCTGA+TGG 0.555242 4_1:+3402504 None:intergenic
TTGGACTGTACTAATTTACA+GGG 0.560286 4_1:+3397483 None:intergenic
GACATGTATATAAGTATGGA+AGG 0.560326 4_1:-3400550 Msa0529670:CDS
ATCTTCACGGTCAAGAGCTA+CGG 0.560822 4_1:-3406494 Msa0529670:five_prime_UTR
CCTAAACCAAGATCCCTGTA+AGG 0.560946 4_1:-3400737 Msa0529670:CDS
TGGAAACAAAATTGTACGAA+TGG 0.565828 4_1:-3400851 Msa0529670:exon
CATATGAGGTGTTTGACGGC+CGG 0.569334 4_1:+3402014 None:intergenic
AACCATCAAATTGAAGCGAT+GGG 0.570523 4_1:+3401538 None:intergenic
GGAGTGTGTTCAAATAGCAT+TGG 0.572465 4_1:-3401783 Msa0529670:five_prime_UTR
TGCACGAAGTTCAGATCCAC+GGG 0.573946 4_1:+3402135 None:intergenic
ATGATATTGAGGAAGGGCCA+AGG 0.574464 4_1:-3399212 Msa0529670:CDS
CCTAATGCTAATCGGCAGAC+CGG 0.576241 4_1:-3401599 Msa0529670:five_prime_UTR
TTATCGATATCCGATTCTGA+TGG 0.583099 4_1:-3402433 Msa0529670:five_prime_UTR
CTACGGTTATCATCCTTACA+GGG 0.584069 4_1:+3400724 None:intergenic
TGTAGACCAAGAGGACCTAA+AGG 0.584749 4_1:+3399189 None:intergenic
GAGAGCTTCATGGCTGCGCG+TGG 0.585405 4_1:+3400763 None:intergenic
TCTAATGCTTGTTCAACACT+AGG 0.587244 4_1:+3401695 None:intergenic
TTGGGAGGACAAGCTCTGGA+AGG 0.588760 4_1:-3400960 Msa0529670:five_prime_UTR
CCTCTGCTTAGTATGCAGTT+GGG 0.589651 4_1:-3400978 Msa0529670:five_prime_UTR
GTGCAGAGACAGATGCAGTA+GGG 0.590473 4_1:+3397557 None:intergenic
GCTTGTCAGCCTTCTACCCG+TGG 0.590728 4_1:-3402151 Msa0529670:five_prime_UTR
TGTGAATGAAATTATCAGGA+AGG 0.593693 4_1:-3397858 Msa0529670:CDS
ACAGGGATCTTGGTTTAGGG+AGG 0.595294 4_1:+3400741 None:intergenic
TCAAATCTATCAGACTTGAA+AGG 0.596208 4_1:+3406424 None:intergenic
AAGATTAAGTGGAAAACCAA+AGG 0.598349 4_1:-3397608 Msa0529670:CDS
TTTGGGATGATATTGAGGAA+GGG 0.600436 4_1:-3399218 Msa0529670:CDS
TGGGAGGACAAGCTCTGGAA+GGG 0.602271 4_1:-3400959 Msa0529670:five_prime_UTR
CCTTGACAAATACCGACCGT+TGG 0.602728 4_1:+3397895 None:intergenic
ACCGTAGAAGAACCACAGAA+AGG 0.603747 4_1:-3400708 Msa0529670:CDS
TGTGCAGAGACAGATGCAGT+AGG 0.604544 4_1:+3397556 None:intergenic
ATCCTGAACAACGGGAATGG+AGG 0.608982 4_1:-3400675 Msa0529670:CDS
TATAAGTATGGAAGGAAATG+CGG 0.609812 4_1:-3400542 Msa0529670:CDS
ATGCACGAAGTTCAGATCCA+CGG 0.609989 4_1:+3402134 None:intergenic
GTCTGCCGATTAGCATTAGG+AGG 0.611723 4_1:+3401602 None:intergenic
GTGATCTGCCTGAAGATGAA+TGG 0.612166 4_1:-3397660 Msa0529670:CDS
AAATCAGGCTCAAAGCATGT+TGG 0.615504 4_1:+3400605 None:intergenic
AACCTTATCATTGAGAGAAG+AGG 0.615582 4_1:+3406378 None:intergenic
GGAATGGAGGAGACGACTCG+TGG 0.616377 4_1:-3400662 Msa0529670:CDS
TAGTTCATCAGCCAGTAATG+AGG 0.617154 4_1:+3400789 None:intergenic
GCTTCATCAGCAGCTGCAGG+AGG 0.617864 4_1:-3401821 Msa0529670:five_prime_UTR
GCAGAGACAGAAGTAAAGAT+GGG 0.618767 4_1:+3402227 None:intergenic
CAGCAGATATGTTTGTAGGG+AGG 0.620591 4_1:-3399314 Msa0529670:CDS
ACTCAACTAACCATTTGTCC+AGG 0.622338 4_1:+3402362 None:intergenic
TGCTCATTATTAGAAGCTCG+TGG 0.624438 4_1:-3401755 Msa0529670:five_prime_UTR
TGAATCGATGTGAACTCCAT+CGG 0.624805 4_1:+3402456 None:intergenic
CTTGAAAAGAGCTTCTGCCG+AGG 0.627062 4_1:-3404695 Msa0529670:five_prime_UTR
CCAACGGTCGGTATTTGTCA+AGG 0.628869 4_1:-3397895 Msa0529670:CDS
TAGATTGGCGCGTGTGTGCG+TGG 0.630527 4_1:-3406594 Msa0529670:five_prime_UTR
CCTTCGTGATCTTGTTATGG+CGG 0.635548 4_1:-3406536 Msa0529670:five_prime_UTR
ACATAAAGAAATATCAGACC+TGG 0.635904 4_1:-3402380 Msa0529670:five_prime_UTR
AGTAGCAAGCTGTGAGCATG+CGG 0.636005 4_1:+3402079 None:intergenic
CCGTCAAACACCTCATATGG+AGG 0.647577 4_1:-3402010 Msa0529670:five_prime_UTR
CCCAACTGCATACTAAGCAG+AGG 0.650328 4_1:+3400978 None:intergenic
AAAATCGTCATCCTGAACAA+CGG 0.651815 4_1:-3400684 Msa0529670:CDS
AGGAGGTTTAAGAGCTGCTG+CGG 0.658917 4_1:-3401804 Msa0529670:five_prime_UTR
CATACCTGTTGTAGACCAAG+AGG 0.660216 4_1:+3399180 None:intergenic
GAATGGAGGAGACGACTCGT+GGG 0.664709 4_1:-3400661 Msa0529670:CDS
ACGTTCTCCTTCATCAAGAG+CGG 0.665530 4_1:+3402285 None:intergenic
TTCACGGTCAAGAGCTACGG+CGG 0.666183 4_1:-3406491 Msa0529670:five_prime_UTR
TCTCTATGATCCTAACCAAG+CGG 0.691354 4_1:+3406723 None:intergenic
ACAAGTTCAGAAGAATACGC+TGG 0.693012 4_1:+3401902 None:intergenic
CTGCTTAGTATGCAGTTGGG+AGG 0.693555 4_1:-3400975 Msa0529670:five_prime_UTR
GAATTGAATTGAAGAAGACA+CGG 0.698389 4_1:+3406655 None:intergenic
AAAATGAAAGGGGTGCCAAG+GGG 0.724461 4_1:+3397383 None:intergenic
CCGCCATAACAAGATCACGA+AGG 0.740134 4_1:+3406536 None:intergenic
AAAACCAAAGGAAATAAACG+GGG 0.769107 4_1:-3397596 Msa0529670:CDS
AGAATTCTATTACCGAACGT+AGG 0.770772 4_1:-3402204 Msa0529670:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTT+AGG - chr4_1:3397814-3397833 Msa0529670:intron 0.0%
!! TATATATATATATATATATT+AGG + chr4_1:3397813-3397832 None:intergenic 0.0%
!!! TTAATATAAATAATTTTAAA+TGG + chr4_1:3405462-3405481 None:intergenic 0.0%
!! ATATATATATATATATATTT+AGG - chr4_1:3397814-3397833 Msa0529670:intron 0.0%
!! TATATATATATATATATATT+AGG + chr4_1:3397813-3397832 None:intergenic 0.0%
!!! TTAATATAAATAATTTTAAA+TGG + chr4_1:3405462-3405481 None:intergenic 0.0%
!!! TATTTTTCTCAAATTATTAT+CGG - chr4_1:3398470-3398489 Msa0529670:intron 10.0%
!!! TCTTATTTATATATTATCAT+CGG + chr4_1:3399568-3399587 None:intergenic 10.0%
!!! AATTCATTTTATTAAATTAG+GGG + chr4_1:3399671-3399690 None:intergenic 10.0%
!!! CAATTCATTTTATTAAATTA+GGG + chr4_1:3399672-3399691 None:intergenic 10.0%
!!! TCAATTCATTTTATTAAATT+AGG + chr4_1:3399673-3399692 None:intergenic 10.0%
!!! AAAAAAAATCATTTTTGAAA+TGG + chr4_1:3400039-3400058 None:intergenic 10.0%
!! TTAAGCTAAATAAATTAAAA+TGG + chr4_1:3401339-3401358 None:intergenic 10.0%
!! GGAAAAAAAAAAAAAAAAAA+AGG + chr4_1:3402718-3402737 None:intergenic 10.0%
!! AACGTTAAAAAAAAATTATA+TGG + chr4_1:3405999-3406018 None:intergenic 10.0%
!!! TATTTTTCTCAAATTATTAT+CGG - chr4_1:3398470-3398489 Msa0529670:intron 10.0%
!!! TCTTATTTATATATTATCAT+CGG + chr4_1:3399568-3399587 None:intergenic 10.0%
!!! AATTCATTTTATTAAATTAG+GGG + chr4_1:3399671-3399690 None:intergenic 10.0%
!!! CAATTCATTTTATTAAATTA+GGG + chr4_1:3399672-3399691 None:intergenic 10.0%
!!! TCAATTCATTTTATTAAATT+AGG + chr4_1:3399673-3399692 None:intergenic 10.0%
!!! AAAAAAAATCATTTTTGAAA+TGG + chr4_1:3400039-3400058 None:intergenic 10.0%
!! TTAAGCTAAATAAATTAAAA+TGG + chr4_1:3401339-3401358 None:intergenic 10.0%
!! GGAAAAAAAAAAAAAAAAAA+AGG + chr4_1:3402718-3402737 None:intergenic 10.0%
!! AACGTTAAAAAAAAATTATA+TGG + chr4_1:3405999-3406018 None:intergenic 10.0%
!! TATATATATAATTAAGCTTC+TGG + chr4_1:3397785-3397804 None:intergenic 15.0%
!! TTTATAAGTTCAAAAAACTT+AGG - chr4_1:3398216-3398235 Msa0529670:intron 15.0%
!! TGTATGCTATATTATTTATA+GGG + chr4_1:3399607-3399626 None:intergenic 15.0%
!! ATGTATGCTATATTATTTAT+AGG + chr4_1:3399608-3399627 None:intergenic 15.0%
!!! GATATTTTAAAACATATACT+AGG - chr4_1:3399803-3399822 Msa0529670:intron 15.0%
!!! TTTTGTTAATATATCTATCT+AGG + chr4_1:3399866-3399885 None:intergenic 15.0%
!! TTAAATTGTAAGCAATTTAA+TGG + chr4_1:3400150-3400169 None:intergenic 15.0%
!!! AAATTTTCAAAAGGAAATAT+TGG + chr4_1:3400488-3400507 None:intergenic 15.0%
!!! TTTTGAAAATTTTCAGAATT+CGG - chr4_1:3400496-3400515 Msa0529670:intron 15.0%
!!! TGTTGATTTTTAAAAATTAC+AGG - chr4_1:3403736-3403755 Msa0529670:intron 15.0%
!!! TTTTTAAAAATTACAGGATT+AGG - chr4_1:3403742-3403761 Msa0529670:intron 15.0%
!! TCTACAATTAGAAATATATA+TGG + chr4_1:3403789-3403808 None:intergenic 15.0%
!! ATATAATAAACCACAAAAAT+TGG + chr4_1:3403901-3403920 None:intergenic 15.0%
!! TAAGTTATTAAGATATTCAA+AGG + chr4_1:3404442-3404461 None:intergenic 15.0%
!! TTGAATATCTTAATAACTTA+TGG - chr4_1:3404442-3404461 Msa0529670:intron 15.0%
!!! CAAATTGGATAATTTTATTT+GGG - chr4_1:3404898-3404917 Msa0529670:intron 15.0%
!!! TTTGTCTTTATTCATTTTAA+TGG - chr4_1:3406595-3406614 Msa0529670:five_prime_UTR 15.0%
!!! TTGTCTTTATTCATTTTAAT+GGG - chr4_1:3406596-3406615 Msa0529670:five_prime_UTR 15.0%
!! TATATATATAATTAAGCTTC+TGG + chr4_1:3397785-3397804 None:intergenic 15.0%
!! TTTATAAGTTCAAAAAACTT+AGG - chr4_1:3398216-3398235 Msa0529670:intron 15.0%
!! TGTATGCTATATTATTTATA+GGG + chr4_1:3399607-3399626 None:intergenic 15.0%
!! ATGTATGCTATATTATTTAT+AGG + chr4_1:3399608-3399627 None:intergenic 15.0%
!!! GATATTTTAAAACATATACT+AGG - chr4_1:3399803-3399822 Msa0529670:intron 15.0%
!!! TTTTGTTAATATATCTATCT+AGG + chr4_1:3399866-3399885 None:intergenic 15.0%
!! TTAAATTGTAAGCAATTTAA+TGG + chr4_1:3400150-3400169 None:intergenic 15.0%
!!! AAATTTTCAAAAGGAAATAT+TGG + chr4_1:3400488-3400507 None:intergenic 15.0%
!!! TTTTGAAAATTTTCAGAATT+CGG - chr4_1:3400496-3400515 Msa0529670:intron 15.0%
!!! TGTTGATTTTTAAAAATTAC+AGG - chr4_1:3403736-3403755 Msa0529670:intron 15.0%
!!! TTTTTAAAAATTACAGGATT+AGG - chr4_1:3403742-3403761 Msa0529670:intron 15.0%
!! TCTACAATTAGAAATATATA+TGG + chr4_1:3403789-3403808 None:intergenic 15.0%
!! ATATAATAAACCACAAAAAT+TGG + chr4_1:3403901-3403920 None:intergenic 15.0%
!! TAAGTTATTAAGATATTCAA+AGG + chr4_1:3404442-3404461 None:intergenic 15.0%
!! TTGAATATCTTAATAACTTA+TGG - chr4_1:3404442-3404461 Msa0529670:intron 15.0%
!!! CAAATTGGATAATTTTATTT+GGG - chr4_1:3404898-3404917 Msa0529670:intron 15.0%
!!! TTTGTCTTTATTCATTTTAA+TGG - chr4_1:3406595-3406614 Msa0529670:five_prime_UTR 15.0%
!!! TTGTCTTTATTCATTTTAAT+GGG - chr4_1:3406596-3406615 Msa0529670:five_prime_UTR 15.0%
!! AATTATGAAGTAAGTAATCA+TGG + chr4_1:3397689-3397708 None:intergenic 20.0%
!! TATATATATTTAGGTCTGTT+TGG - chr4_1:3397823-3397842 Msa0529670:CDS 20.0%
!! GAGAAAAATAACATAATTGA+AGG + chr4_1:3398460-3398479 None:intergenic 20.0%
!!! CTTTACTAGTTTATAGTTTA+AGG + chr4_1:3399367-3399386 None:intergenic 20.0%
!! ATACAATAATTTAACACAGA+TGG - chr4_1:3399698-3399717 Msa0529670:intron 20.0%
!! TACAATAATTTAACACAGAT+GGG - chr4_1:3399699-3399718 Msa0529670:intron 20.0%
!! CAAAAAATACTTGTATCATA+AGG - chr4_1:3399985-3400004 Msa0529670:intron 20.0%
!!! GAATTCTGAAAATTTTCAAA+AGG + chr4_1:3400497-3400516 None:intergenic 20.0%
!! TATTTATTTGATGAAACATG+AGG + chr4_1:3401103-3401122 None:intergenic 20.0%
!! AAGGATAAATAAAAAGAACA+AGG + chr4_1:3401250-3401269 None:intergenic 20.0%
!!! AGGTAACTGTTTTTTTTTAA+TGG + chr4_1:3402576-3402595 None:intergenic 20.0%
!! GACAAAATAAAAAGATGAAA+AGG + chr4_1:3402739-3402758 None:intergenic 20.0%
!!! GATATTTTTTATGCTTATAC+AGG - chr4_1:3402936-3402955 Msa0529670:intron 20.0%
!!! TTTTTGGAAATTTGTGAAAT+TGG - chr4_1:3403842-3403861 Msa0529670:intron 20.0%
!!! ATTTGTGAAATTGGTAATTA+AGG - chr4_1:3403851-3403870 Msa0529670:intron 20.0%
!! CAAAAGAAATATTACTCATT+GGG - chr4_1:3404059-3404078 Msa0529670:intron 20.0%
!! TAAAACATAGTTAGCATTTA+TGG + chr4_1:3404385-3404404 None:intergenic 20.0%
!!! AAACAATTTTCAGTTAGTTT+TGG - chr4_1:3404826-3404845 Msa0529670:intron 20.0%
!!! ATTATCCAATTTGCTTATAA+AGG + chr4_1:3404891-3404910 None:intergenic 20.0%
!!! GCAAATTGGATAATTTTATT+TGG - chr4_1:3404897-3404916 Msa0529670:intron 20.0%
!! AAGAACTCAAGTTTATTATT+GGG + chr4_1:3405152-3405171 None:intergenic 20.0%
!!! CAATTACATGTTTTAATCAA+AGG - chr4_1:3405282-3405301 Msa0529670:intron 20.0%
!! AGTATCAATTTAAGAAATCA+AGG + chr4_1:3405320-3405339 None:intergenic 20.0%
!! TCTTATTACATTAGCTATAA+TGG - chr4_1:3405348-3405367 Msa0529670:intron 20.0%
!! CTTATTACATTAGCTATAAT+GGG - chr4_1:3405349-3405368 Msa0529670:intron 20.0%
!!! ACAAATTTTCTTATAAGTTG+TGG + chr4_1:3405812-3405831 None:intergenic 20.0%
!! ATGTTAATTAACGCAATAAT+CGG + chr4_1:3406519-3406538 None:intergenic 20.0%
!! ATTATTGCGTTAATTAACAT+TGG - chr4_1:3406519-3406538 Msa0529670:five_prime_UTR 20.0%
!! AATAAAGACAAAAATGAAAG+GGG + chr4_1:3406587-3406606 None:intergenic 20.0%
!! GAATAAAGACAAAAATGAAA+GGG + chr4_1:3406588-3406607 None:intergenic 20.0%
!! TGAATAAAGACAAAAATGAA+AGG + chr4_1:3406589-3406608 None:intergenic 20.0%
!!! TGTCTTTATTCATTTTAATG+GGG - chr4_1:3406597-3406616 Msa0529670:five_prime_UTR 20.0%
!! AATTATGAAGTAAGTAATCA+TGG + chr4_1:3397689-3397708 None:intergenic 20.0%
!! TATATATATTTAGGTCTGTT+TGG - chr4_1:3397823-3397842 Msa0529670:CDS 20.0%
!! GAGAAAAATAACATAATTGA+AGG + chr4_1:3398460-3398479 None:intergenic 20.0%
!!! CTTTACTAGTTTATAGTTTA+AGG + chr4_1:3399367-3399386 None:intergenic 20.0%
!! ATACAATAATTTAACACAGA+TGG - chr4_1:3399698-3399717 Msa0529670:intron 20.0%
!! TACAATAATTTAACACAGAT+GGG - chr4_1:3399699-3399718 Msa0529670:intron 20.0%
!! CAAAAAATACTTGTATCATA+AGG - chr4_1:3399985-3400004 Msa0529670:intron 20.0%
!!! GAATTCTGAAAATTTTCAAA+AGG + chr4_1:3400497-3400516 None:intergenic 20.0%
!! TATTTATTTGATGAAACATG+AGG + chr4_1:3401103-3401122 None:intergenic 20.0%
!! AAGGATAAATAAAAAGAACA+AGG + chr4_1:3401250-3401269 None:intergenic 20.0%
!!! AGGTAACTGTTTTTTTTTAA+TGG + chr4_1:3402576-3402595 None:intergenic 20.0%
!! GACAAAATAAAAAGATGAAA+AGG + chr4_1:3402739-3402758 None:intergenic 20.0%
!!! GATATTTTTTATGCTTATAC+AGG - chr4_1:3402936-3402955 Msa0529670:intron 20.0%
!!! TTTTTGGAAATTTGTGAAAT+TGG - chr4_1:3403842-3403861 Msa0529670:intron 20.0%
!!! ATTTGTGAAATTGGTAATTA+AGG - chr4_1:3403851-3403870 Msa0529670:intron 20.0%
!! CAAAAGAAATATTACTCATT+GGG - chr4_1:3404059-3404078 Msa0529670:intron 20.0%
!! TAAAACATAGTTAGCATTTA+TGG + chr4_1:3404385-3404404 None:intergenic 20.0%
!!! AAACAATTTTCAGTTAGTTT+TGG - chr4_1:3404826-3404845 Msa0529670:intron 20.0%
!!! ATTATCCAATTTGCTTATAA+AGG + chr4_1:3404891-3404910 None:intergenic 20.0%
!!! GCAAATTGGATAATTTTATT+TGG - chr4_1:3404897-3404916 Msa0529670:intron 20.0%
!! AAGAACTCAAGTTTATTATT+GGG + chr4_1:3405152-3405171 None:intergenic 20.0%
!!! CAATTACATGTTTTAATCAA+AGG - chr4_1:3405282-3405301 Msa0529670:intron 20.0%
!! AGTATCAATTTAAGAAATCA+AGG + chr4_1:3405320-3405339 None:intergenic 20.0%
!! TCTTATTACATTAGCTATAA+TGG - chr4_1:3405348-3405367 Msa0529670:intron 20.0%
!! CTTATTACATTAGCTATAAT+GGG - chr4_1:3405349-3405368 Msa0529670:intron 20.0%
!!! ACAAATTTTCTTATAAGTTG+TGG + chr4_1:3405812-3405831 None:intergenic 20.0%
!! ATGTTAATTAACGCAATAAT+CGG + chr4_1:3406519-3406538 None:intergenic 20.0%
!! ATTATTGCGTTAATTAACAT+TGG - chr4_1:3406519-3406538 Msa0529670:five_prime_UTR 20.0%
!! AATAAAGACAAAAATGAAAG+GGG + chr4_1:3406587-3406606 None:intergenic 20.0%
!! GAATAAAGACAAAAATGAAA+GGG + chr4_1:3406588-3406607 None:intergenic 20.0%
!! TGAATAAAGACAAAAATGAA+AGG + chr4_1:3406589-3406608 None:intergenic 20.0%
!!! TGTCTTTATTCATTTTAATG+GGG - chr4_1:3406597-3406616 Msa0529670:five_prime_UTR 20.0%
! CAACATTGAATGAATTGAAT+TGG + chr4_1:3397327-3397346 None:intergenic 25.0%
! AAAATTGAAAACCTGATGAA+TGG + chr4_1:3397650-3397669 None:intergenic 25.0%
! TTATGTAGTTGATTAATCGA+AGG - chr4_1:3397721-3397740 Msa0529670:intron 25.0%
! CGTTTAATATGCTTATGTAT+AGG - chr4_1:3397881-3397900 Msa0529670:CDS 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG - chr4_1:3397965-3397984 Msa0529670:intron 25.0%
!!! ATTCTCAGCTTATTTTGATA+AGG + chr4_1:3397994-3398013 None:intergenic 25.0%
! TATCAAAATAAGCTGAGAAT+AGG - chr4_1:3397994-3398013 Msa0529670:intron 25.0%
! TAAGTTCAAAAAACTTAGGT+TGG - chr4_1:3398220-3398239 Msa0529670:intron 25.0%
!! ATTAGCATAACTTTTGTGAT+GGG + chr4_1:3398305-3398324 None:intergenic 25.0%
!! TATTAGCATAACTTTTGTGA+TGG + chr4_1:3398306-3398325 None:intergenic 25.0%
! CTCTTAAATTCTTCACTTAT+TGG + chr4_1:3398578-3398597 None:intergenic 25.0%
! GCATCACAATTGATATATAA+AGG + chr4_1:3398661-3398680 None:intergenic 25.0%
! AAAATTGTGACTAAAAGGAA+TGG + chr4_1:3399047-3399066 None:intergenic 25.0%
! GAAACAAAATTGTGACTAAA+AGG + chr4_1:3399052-3399071 None:intergenic 25.0%
! TAATGGTAAAACCTATTTGT+TGG - chr4_1:3399092-3399111 Msa0529670:intron 25.0%
! AATGGTAAAACCTATTTGTT+GGG - chr4_1:3399093-3399112 Msa0529670:intron 25.0%
! CTATAAACTAGTAAAGAAAG+TGG - chr4_1:3399371-3399390 Msa0529670:intron 25.0%
! ATACTTGTATCATAAGGAAA+AGG - chr4_1:3399991-3400010 Msa0529670:intron 25.0%
! ACATTTGTAAAAAGTTCACA+AGG + chr4_1:3400064-3400083 None:intergenic 25.0%
!! TGACATATTGTCGTTTATTA+GGG + chr4_1:3400094-3400113 None:intergenic 25.0%
! AATTGTAAGCAATTTAATGG+AGG + chr4_1:3400147-3400166 None:intergenic 25.0%
! TCCATCTATAAATCATCAAT+AGG - chr4_1:3400231-3400250 Msa0529670:intron 25.0%
!! CAAAAATCAAAGCAAGTTTT+TGG - chr4_1:3400419-3400438 Msa0529670:intron 25.0%
! TCTGCATTTAAATTTCTGTA+TGG - chr4_1:3400817-3400836 Msa0529670:CDS 25.0%
! AAATTTCTGTATGGTAGATT+TGG - chr4_1:3400826-3400845 Msa0529670:CDS 25.0%
!!! TCTTTGCTTAAGTATTTTGA+GGG - chr4_1:3400970-3400989 Msa0529670:five_prime_UTR 25.0%
! GATGCTTCATAAATTCTAAA+AGG - chr4_1:3401057-3401076 Msa0529670:intron 25.0%
! ATCAGTATATGATTTGACAA+AGG - chr4_1:3401127-3401146 Msa0529670:intron 25.0%
! TCAGTATATGATTTGACAAA+GGG - chr4_1:3401128-3401147 Msa0529670:intron 25.0%
!! CTAAAAAGTTTCAAAAGTAC+AGG + chr4_1:3402241-3402260 None:intergenic 25.0%
! TTATGACATAGAATGATGTT+TGG - chr4_1:3402476-3402495 Msa0529670:five_prime_UTR 25.0%
! TATGACATAGAATGATGTTT+GGG - chr4_1:3402477-3402496 Msa0529670:five_prime_UTR 25.0%
! AAAATTCACATTGCAAATCA+AGG + chr4_1:3402596-3402615 None:intergenic 25.0%
! AAGGAAAAATCATAGACTAA+AGG + chr4_1:3402699-3402718 None:intergenic 25.0%
!!! CAGCTGCATTATTTTAATAT+TGG - chr4_1:3402836-3402855 Msa0529670:intron 25.0%
! AAAAACCACAAACTACATAA+GGG + chr4_1:3402893-3402912 None:intergenic 25.0%
! AAAAAACCACAAACTACATA+AGG + chr4_1:3402894-3402913 None:intergenic 25.0%
! TATACCTGAAAAATCAAAGA+CGG + chr4_1:3403458-3403477 None:intergenic 25.0%
!!! CTTTGATTTTTCAGGTATAA+TGG - chr4_1:3403459-3403478 Msa0529670:intron 25.0%
!! AAGTGTTAAATTTAAAACCC+AGG + chr4_1:3403487-3403506 None:intergenic 25.0%
!! AAATCTTCAAAACTGATTCA+TGG + chr4_1:3403510-3403529 None:intergenic 25.0%
!! TATTTCTTTTGGTAGATGAA+TGG + chr4_1:3404050-3404069 None:intergenic 25.0%
!! CCAATGAGTAATATTTCTTT+TGG + chr4_1:3404061-3404080 None:intergenic 25.0%
! CCAAAAGAAATATTACTCAT+TGG - chr4_1:3404058-3404077 Msa0529670:intron 25.0%
! CAATTTATTATTTCCTTCTG+TGG + chr4_1:3404104-3404123 None:intergenic 25.0%
!! TTTTTGTTGAGTTTTACATG+CGG - chr4_1:3404186-3404205 Msa0529670:intron 25.0%
!! TTAAACTCTGCATTTTATCA+AGG + chr4_1:3404253-3404272 None:intergenic 25.0%
!!! ACAACTTTTTTACATCTTAG+TGG - chr4_1:3404304-3404323 Msa0529670:intron 25.0%
!!! CAACTTTTTTACATCTTAGT+GGG - chr4_1:3404305-3404324 Msa0529670:intron 25.0%
! TAATAACTTATGGAACATGT+TGG - chr4_1:3404452-3404471 Msa0529670:intron 25.0%
! TTTCATAAAACTGAACAGAA+TGG - chr4_1:3404611-3404630 Msa0529670:intron 25.0%
!!! TTACAGAAACTGTTATTTTG+TGG - chr4_1:3404697-3404716 Msa0529670:five_prime_UTR 25.0%
! ATGCAATTGAAATTTGATCA+TGG - chr4_1:3404797-3404816 Msa0529670:intron 25.0%
! TGATTCCTTTATAAGCAAAT+TGG - chr4_1:3404883-3404902 Msa0529670:intron 25.0%
! TATTATTCTGTTTAAACCAC+TGG + chr4_1:3404994-3405013 None:intergenic 25.0%
! TATTTACATGCCTTAAACTT+TGG + chr4_1:3405096-3405115 None:intergenic 25.0%
! CAAGAACTCAAGTTTATTAT+TGG + chr4_1:3405153-3405172 None:intergenic 25.0%
! ATTAAAACATGTAATTGACG+AGG + chr4_1:3405279-3405298 None:intergenic 25.0%
! TCAATTTAAGAAATCAAGGA+TGG + chr4_1:3405316-3405335 None:intergenic 25.0%
!!! TAAAGTGTTTTTTGAAAGGA+CGG + chr4_1:3405654-3405673 None:intergenic 25.0%
! TCCTTTCAAAAAACACTTTA+GGG - chr4_1:3405654-3405673 Msa0529670:intron 25.0%
!! GACAAATTTTCTTATAGTTG+TGG + chr4_1:3405735-3405754 None:intergenic 25.0%
! GAATTGTGAATGAAATTATC+AGG - chr4_1:3406095-3406114 Msa0529670:intron 25.0%
! AATTGCAAAACATACCTATA+CGG + chr4_1:3406157-3406176 None:intergenic 25.0%
!!! GTCTTTATTCATTTTAATGG+GGG - chr4_1:3406598-3406617 Msa0529670:five_prime_UTR 25.0%
! CAACATTGAATGAATTGAAT+TGG + chr4_1:3397327-3397346 None:intergenic 25.0%
! AAAATTGAAAACCTGATGAA+TGG + chr4_1:3397650-3397669 None:intergenic 25.0%
! TTATGTAGTTGATTAATCGA+AGG - chr4_1:3397721-3397740 Msa0529670:intron 25.0%
! CGTTTAATATGCTTATGTAT+AGG - chr4_1:3397881-3397900 Msa0529670:CDS 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG - chr4_1:3397965-3397984 Msa0529670:intron 25.0%
!!! ATTCTCAGCTTATTTTGATA+AGG + chr4_1:3397994-3398013 None:intergenic 25.0%
! TATCAAAATAAGCTGAGAAT+AGG - chr4_1:3397994-3398013 Msa0529670:intron 25.0%
! TAAGTTCAAAAAACTTAGGT+TGG - chr4_1:3398220-3398239 Msa0529670:intron 25.0%
!! ATTAGCATAACTTTTGTGAT+GGG + chr4_1:3398305-3398324 None:intergenic 25.0%
!! TATTAGCATAACTTTTGTGA+TGG + chr4_1:3398306-3398325 None:intergenic 25.0%
! CTCTTAAATTCTTCACTTAT+TGG + chr4_1:3398578-3398597 None:intergenic 25.0%
! GCATCACAATTGATATATAA+AGG + chr4_1:3398661-3398680 None:intergenic 25.0%
! AAAATTGTGACTAAAAGGAA+TGG + chr4_1:3399047-3399066 None:intergenic 25.0%
! GAAACAAAATTGTGACTAAA+AGG + chr4_1:3399052-3399071 None:intergenic 25.0%
! TAATGGTAAAACCTATTTGT+TGG - chr4_1:3399092-3399111 Msa0529670:intron 25.0%
! AATGGTAAAACCTATTTGTT+GGG - chr4_1:3399093-3399112 Msa0529670:intron 25.0%
! CTATAAACTAGTAAAGAAAG+TGG - chr4_1:3399371-3399390 Msa0529670:intron 25.0%
! ATACTTGTATCATAAGGAAA+AGG - chr4_1:3399991-3400010 Msa0529670:intron 25.0%
! ACATTTGTAAAAAGTTCACA+AGG + chr4_1:3400064-3400083 None:intergenic 25.0%
!! TGACATATTGTCGTTTATTA+GGG + chr4_1:3400094-3400113 None:intergenic 25.0%
! AATTGTAAGCAATTTAATGG+AGG + chr4_1:3400147-3400166 None:intergenic 25.0%
! TCCATCTATAAATCATCAAT+AGG - chr4_1:3400231-3400250 Msa0529670:intron 25.0%
!! CAAAAATCAAAGCAAGTTTT+TGG - chr4_1:3400419-3400438 Msa0529670:intron 25.0%
! TCTGCATTTAAATTTCTGTA+TGG - chr4_1:3400817-3400836 Msa0529670:CDS 25.0%
! AAATTTCTGTATGGTAGATT+TGG - chr4_1:3400826-3400845 Msa0529670:CDS 25.0%
!!! TCTTTGCTTAAGTATTTTGA+GGG - chr4_1:3400970-3400989 Msa0529670:five_prime_UTR 25.0%
! GATGCTTCATAAATTCTAAA+AGG - chr4_1:3401057-3401076 Msa0529670:intron 25.0%
! ATCAGTATATGATTTGACAA+AGG - chr4_1:3401127-3401146 Msa0529670:intron 25.0%
! TCAGTATATGATTTGACAAA+GGG - chr4_1:3401128-3401147 Msa0529670:intron 25.0%
!! CTAAAAAGTTTCAAAAGTAC+AGG + chr4_1:3402241-3402260 None:intergenic 25.0%
! TTATGACATAGAATGATGTT+TGG - chr4_1:3402476-3402495 Msa0529670:five_prime_UTR 25.0%
! TATGACATAGAATGATGTTT+GGG - chr4_1:3402477-3402496 Msa0529670:five_prime_UTR 25.0%
! AAAATTCACATTGCAAATCA+AGG + chr4_1:3402596-3402615 None:intergenic 25.0%
! AAGGAAAAATCATAGACTAA+AGG + chr4_1:3402699-3402718 None:intergenic 25.0%
!!! CAGCTGCATTATTTTAATAT+TGG - chr4_1:3402836-3402855 Msa0529670:intron 25.0%
! AAAAACCACAAACTACATAA+GGG + chr4_1:3402893-3402912 None:intergenic 25.0%
! AAAAAACCACAAACTACATA+AGG + chr4_1:3402894-3402913 None:intergenic 25.0%
! TATACCTGAAAAATCAAAGA+CGG + chr4_1:3403458-3403477 None:intergenic 25.0%
!!! CTTTGATTTTTCAGGTATAA+TGG - chr4_1:3403459-3403478 Msa0529670:intron 25.0%
!! AAGTGTTAAATTTAAAACCC+AGG + chr4_1:3403487-3403506 None:intergenic 25.0%
!! AAATCTTCAAAACTGATTCA+TGG + chr4_1:3403510-3403529 None:intergenic 25.0%
!! TATTTCTTTTGGTAGATGAA+TGG + chr4_1:3404050-3404069 None:intergenic 25.0%
!! CCAATGAGTAATATTTCTTT+TGG + chr4_1:3404061-3404080 None:intergenic 25.0%
! CCAAAAGAAATATTACTCAT+TGG - chr4_1:3404058-3404077 Msa0529670:intron 25.0%
! CAATTTATTATTTCCTTCTG+TGG + chr4_1:3404104-3404123 None:intergenic 25.0%
!! TTTTTGTTGAGTTTTACATG+CGG - chr4_1:3404186-3404205 Msa0529670:intron 25.0%
!! TTAAACTCTGCATTTTATCA+AGG + chr4_1:3404253-3404272 None:intergenic 25.0%
!!! ACAACTTTTTTACATCTTAG+TGG - chr4_1:3404304-3404323 Msa0529670:intron 25.0%
!!! CAACTTTTTTACATCTTAGT+GGG - chr4_1:3404305-3404324 Msa0529670:intron 25.0%
! TAATAACTTATGGAACATGT+TGG - chr4_1:3404452-3404471 Msa0529670:intron 25.0%
! TTTCATAAAACTGAACAGAA+TGG - chr4_1:3404611-3404630 Msa0529670:intron 25.0%
!!! TTACAGAAACTGTTATTTTG+TGG - chr4_1:3404697-3404716 Msa0529670:five_prime_UTR 25.0%
! ATGCAATTGAAATTTGATCA+TGG - chr4_1:3404797-3404816 Msa0529670:intron 25.0%
! TGATTCCTTTATAAGCAAAT+TGG - chr4_1:3404883-3404902 Msa0529670:intron 25.0%
! TATTATTCTGTTTAAACCAC+TGG + chr4_1:3404994-3405013 None:intergenic 25.0%
! TATTTACATGCCTTAAACTT+TGG + chr4_1:3405096-3405115 None:intergenic 25.0%
! CAAGAACTCAAGTTTATTAT+TGG + chr4_1:3405153-3405172 None:intergenic 25.0%
! ATTAAAACATGTAATTGACG+AGG + chr4_1:3405279-3405298 None:intergenic 25.0%
! TCAATTTAAGAAATCAAGGA+TGG + chr4_1:3405316-3405335 None:intergenic 25.0%
!!! TAAAGTGTTTTTTGAAAGGA+CGG + chr4_1:3405654-3405673 None:intergenic 25.0%
! TCCTTTCAAAAAACACTTTA+GGG - chr4_1:3405654-3405673 Msa0529670:intron 25.0%
!! GACAAATTTTCTTATAGTTG+TGG + chr4_1:3405735-3405754 None:intergenic 25.0%
! GAATTGTGAATGAAATTATC+AGG - chr4_1:3406095-3406114 Msa0529670:intron 25.0%
! AATTGCAAAACATACCTATA+CGG + chr4_1:3406157-3406176 None:intergenic 25.0%
!!! GTCTTTATTCATTTTAATGG+GGG - chr4_1:3406598-3406617 Msa0529670:five_prime_UTR 25.0%
GAATTGAATTGAAGAAGACA+CGG + chr4_1:3397305-3397324 None:intergenic 30.0%
!! TGTTCAATTTCTAGCTAGAT+TGG - chr4_1:3397348-3397367 Msa0529670:three_prime_UTR 30.0%
TCAAATCTATCAGACTTGAA+AGG + chr4_1:3397536-3397555 None:intergenic 30.0%
TGAGAATAGGTTAGAAACAA+CGG - chr4_1:3398007-3398026 Msa0529670:intron 30.0%
AAAATAAGCCAGAAAAGCTT+GGG - chr4_1:3398174-3398193 Msa0529670:intron 30.0%
AACTTATGACACTGTTTGTT+TGG + chr4_1:3398267-3398286 None:intergenic 30.0%
TTATACATGTGACACATGTT+TGG + chr4_1:3398350-3398369 None:intergenic 30.0%
! ATACCAACATTTTCTATCGA+AGG - chr4_1:3398369-3398388 Msa0529670:intron 30.0%
! ATATGAAGCATCTAACATGT+TGG + chr4_1:3398498-3398517 None:intergenic 30.0%
AAATTCTTCACTTATTGGAG+TGG + chr4_1:3398573-3398592 None:intergenic 30.0%
ATAGTTTCTTGTTGCTAACA+AGG - chr4_1:3398612-3398631 Msa0529670:intron 30.0%
ATGAATAACATGATTGACAG+AGG + chr4_1:3398784-3398803 None:intergenic 30.0%
!! TTGTTTCTAGTTCGTATACT+TGG - chr4_1:3398822-3398841 Msa0529670:intron 30.0%
AACCATGTAGATCATAATAG+AGG + chr4_1:3398884-3398903 None:intergenic 30.0%
TTATCTGCTATCTAGCATAA+AGG + chr4_1:3398916-3398935 None:intergenic 30.0%
! ATAATCTAAGACTTGTGTTG+AGG - chr4_1:3398932-3398951 Msa0529670:intron 30.0%
TAGATACTTAGACGACTAAA+TGG + chr4_1:3399074-3399093 None:intergenic 30.0%
TTAGTCGTCTAAGTATCTAA+TGG - chr4_1:3399075-3399094 Msa0529670:intron 30.0%
ATAAGACATACCCAACAAAT+AGG + chr4_1:3399106-3399125 None:intergenic 30.0%
CATAATTGCTTAATTTCCTG+GGG + chr4_1:3399227-3399246 None:intergenic 30.0%
GCATAATTGCTTAATTTCCT+GGG + chr4_1:3399228-3399247 None:intergenic 30.0%
TGCATAATTGCTTAATTTCC+TGG + chr4_1:3399229-3399248 None:intergenic 30.0%
TGTTGTTGTATCAACTATCT+AGG + chr4_1:3399781-3399800 None:intergenic 30.0%
! AGATAGTTGATACAACAACA+CGG - chr4_1:3399781-3399800 Msa0529670:intron 30.0%
! GACATATTGTCGTTTATTAG+GGG + chr4_1:3400093-3400112 None:intergenic 30.0%
! GTGACATATTGTCGTTTATT+AGG + chr4_1:3400095-3400114 None:intergenic 30.0%
ATTTAACGTCTAACACTAAC+TGG - chr4_1:3400164-3400183 Msa0529670:intron 30.0%
! GCCTATTGATGATTTATAGA+TGG + chr4_1:3400235-3400254 None:intergenic 30.0%
ACTCTACCAATTCAAAAAGT+TGG - chr4_1:3400256-3400275 Msa0529670:intron 30.0%
! TAGTGACCAACTTTTTGAAT+TGG + chr4_1:3400265-3400284 None:intergenic 30.0%
GTGCATGAAAAATTTGATGA+TGG + chr4_1:3400288-3400307 None:intergenic 30.0%
! TGAAAATTTTCAGAATTCGG+AGG - chr4_1:3400499-3400518 Msa0529670:intron 30.0%
! TATCGATTGGTATTGTATAC+AGG + chr4_1:3400558-3400577 None:intergenic 30.0%
!! ACTAGTTTCACATAGAGTTT+TGG + chr4_1:3400763-3400782 None:intergenic 30.0%
AAAACTCTATGTGAAACTAG+TGG - chr4_1:3400762-3400781 Msa0529670:CDS 30.0%
TAAATGCAGAAAAGCTTGAA+GGG + chr4_1:3400807-3400826 None:intergenic 30.0%
TTAAATGCAGAAAAGCTTGA+AGG + chr4_1:3400808-3400827 None:intergenic 30.0%
ACAAAACACCAATTGTCTAA+TGG - chr4_1:3400904-3400923 Msa0529670:five_prime_UTR 30.0%
CTCAAAATACTTAAGCAAAG+AGG + chr4_1:3400971-3400990 None:intergenic 30.0%
! CTCTTTGCTTAAGTATTTTG+AGG - chr4_1:3400969-3400988 Msa0529670:five_prime_UTR 30.0%
!! AAATGTATGCGAAGAGTATT+TGG + chr4_1:3401027-3401046 None:intergenic 30.0%
GAGGATGAAGCTAAAATATT+AGG + chr4_1:3401084-3401103 None:intergenic 30.0%
!! ATCAGCTTTTTCTGTATAGA+AGG + chr4_1:3401269-3401288 None:intergenic 30.0%
TAAATGTCATAGAACTTCCA+AGG - chr4_1:3401400-3401419 Msa0529670:intron 30.0%
TACAGAAAAACCATCAGAAT+CGG + chr4_1:3401537-3401556 None:intergenic 30.0%
! TCTGATGGTTTTTCTGTAAA+TGG - chr4_1:3401539-3401558 Msa0529670:five_prime_UTR 30.0%
! TTTTTCTGTAAATGGTACAC+TGG - chr4_1:3401547-3401566 Msa0529670:five_prime_UTR 30.0%
ACATAAAGAAATATCAGACC+TGG - chr4_1:3401577-3401596 Msa0529670:five_prime_UTR 30.0%
TTTCAGCCCTTAAAAAACTT+GGG - chr4_1:3401849-3401868 Msa0529670:five_prime_UTR 30.0%
!! TGAGTAGTTGTTCTAAAACT+AGG - chr4_1:3402536-3402555 Msa0529670:five_prime_UTR 30.0%
ATTGTGTGTGAAAAAACAGA+TGG - chr4_1:3402642-3402661 Msa0529670:intron 30.0%
GAAAAATCATAGACTAAAGG+TGG + chr4_1:3402696-3402715 None:intergenic 30.0%
TGGAAACAAAATTGTACGAA+TGG - chr4_1:3403106-3403125 Msa0529670:intron 30.0%
AGCTGACATGTATATAAGTA+TGG - chr4_1:3403403-3403422 Msa0529670:intron 30.0%
GACATGTATATAAGTATGGA+AGG - chr4_1:3403407-3403426 Msa0529670:intron 30.0%
TATAAGTATGGAAGGAAATG+CGG - chr4_1:3403415-3403434 Msa0529670:intron 30.0%
! AATCTGATTCTGTAGTCTTA+TGG - chr4_1:3403712-3403731 Msa0529670:intron 30.0%
!!! TCGAATGTTGGCTAATTTTT+TGG - chr4_1:3403826-3403845 Msa0529670:intron 30.0%
!! GGATTCTGAGAATATTTTCT+TGG - chr4_1:3403872-3403891 Msa0529670:intron 30.0%
!! TTCTTGGTAACCAATTTTTG+TGG - chr4_1:3403888-3403907 Msa0529670:intron 30.0%
GCAGAAAATTGAAACTCTTA+CGG - chr4_1:3403927-3403946 Msa0529670:intron 30.0%
AAAAAAGTTGACGTGTAACT+AGG + chr4_1:3404137-3404156 None:intergenic 30.0%
! TTTTGTTGAGTTTTACATGC+GGG - chr4_1:3404187-3404206 Msa0529670:intron 30.0%
!! TATCTATCTCCTGGTTTTTA+TGG - chr4_1:3404215-3404234 Msa0529670:intron 30.0%
GTAAAAAAGTTGTCTACCTA+GGG + chr4_1:3404297-3404316 None:intergenic 30.0%
TGTAAAAAAGTTGTCTACCT+AGG + chr4_1:3404298-3404317 None:intergenic 30.0%
AGTTGAAGCATAAACAGAAA+CGG + chr4_1:3404546-3404565 None:intergenic 30.0%
AGACTGTTATGTTATTATCC+AGG - chr4_1:3404584-3404603 Msa0529670:intron 30.0%
AAACATATCTGCTGCTATAT+TGG + chr4_1:3404637-3404656 None:intergenic 30.0%
! CCTTAAACTTTGGTTTAGTT+TGG + chr4_1:3405086-3405105 None:intergenic 30.0%
CCAAACTAAACCAAAGTTTA+AGG - chr4_1:3405083-3405102 Msa0529670:intron 30.0%
TAAACAAGATGTTTCGAAGT+TGG + chr4_1:3405420-3405439 None:intergenic 30.0%
GCATTTCACATGTATTTATC+TGG + chr4_1:3405508-3405527 None:intergenic 30.0%
TAAATACATGTGAAATGCAC+AGG - chr4_1:3405510-3405529 Msa0529670:intron 30.0%
! GTCAATCAATACTAACCTTT+TGG - chr4_1:3405621-3405640 Msa0529670:intron 30.0%
! AATACTAACCTTTTGGATTC+TGG - chr4_1:3405628-3405647 Msa0529670:intron 30.0%
GTCCTTTCAAAAAACACTTT+AGG - chr4_1:3405653-3405672 Msa0529670:intron 30.0%
GGGCACATTTATTTACTTAT+TGG - chr4_1:3405674-3405693 Msa0529670:intron 30.0%
!! TTGTGGAGAATTTCTGAAAT+GGG + chr4_1:3405795-3405814 None:intergenic 30.0%
! ATTCTAAAGAGCAATACATG+CGG + chr4_1:3405881-3405900 None:intergenic 30.0%
!!! TAACGTTGTGCAGTTTTATT+TGG - chr4_1:3406012-3406031 Msa0529670:intron 30.0%
TGTGAATGAAATTATCAGGA+AGG - chr4_1:3406099-3406118 Msa0529670:intron 30.0%
AAATGCAGATAGAATGTTGA+TGG + chr4_1:3406199-3406218 None:intergenic 30.0%
TCATTAAACCATTCATCTTC+AGG + chr4_1:3406308-3406327 None:intergenic 30.0%
TGAAATATGTCAAGATGCTA+TGG - chr4_1:3406325-3406344 Msa0529670:intron 30.0%
AAGATTAAGTGGAAAACCAA+AGG - chr4_1:3406349-3406368 Msa0529670:intron 30.0%
GGAAAACCAAAGGAAATAAA+CGG - chr4_1:3406359-3406378 Msa0529670:intron 30.0%
GAAAACCAAAGGAAATAAAC+GGG - chr4_1:3406360-3406379 Msa0529670:intron 30.0%
AAAACCAAAGGAAATAAACG+GGG - chr4_1:3406361-3406380 Msa0529670:intron 30.0%
TTGGACTGTACTAATTTACA+GGG + chr4_1:3406477-3406496 None:intergenic 30.0%
ATTGGACTGTACTAATTTAC+AGG + chr4_1:3406478-3406497 None:intergenic 30.0%
CCAGTAATTTCATGATAGAT+TGG + chr4_1:3406496-3406515 None:intergenic 30.0%
CCAATCTATCATGAAATTAC+TGG - chr4_1:3406493-3406512 Msa0529670:five_prime_UTR 30.0%
!!! ATTTTTTGTCCCGTCAAATT+TGG - chr4_1:3406649-3406668 Msa0529670:five_prime_UTR 30.0%
GAATTGAATTGAAGAAGACA+CGG + chr4_1:3397305-3397324 None:intergenic 30.0%
!! TGTTCAATTTCTAGCTAGAT+TGG - chr4_1:3397348-3397367 Msa0529670:three_prime_UTR 30.0%
TCAAATCTATCAGACTTGAA+AGG + chr4_1:3397536-3397555 None:intergenic 30.0%
TGAGAATAGGTTAGAAACAA+CGG - chr4_1:3398007-3398026 Msa0529670:intron 30.0%
AAAATAAGCCAGAAAAGCTT+GGG - chr4_1:3398174-3398193 Msa0529670:intron 30.0%
AACTTATGACACTGTTTGTT+TGG + chr4_1:3398267-3398286 None:intergenic 30.0%
TTATACATGTGACACATGTT+TGG + chr4_1:3398350-3398369 None:intergenic 30.0%
! ATACCAACATTTTCTATCGA+AGG - chr4_1:3398369-3398388 Msa0529670:intron 30.0%
! ATATGAAGCATCTAACATGT+TGG + chr4_1:3398498-3398517 None:intergenic 30.0%
AAATTCTTCACTTATTGGAG+TGG + chr4_1:3398573-3398592 None:intergenic 30.0%
ATAGTTTCTTGTTGCTAACA+AGG - chr4_1:3398612-3398631 Msa0529670:intron 30.0%
ATGAATAACATGATTGACAG+AGG + chr4_1:3398784-3398803 None:intergenic 30.0%
!! TTGTTTCTAGTTCGTATACT+TGG - chr4_1:3398822-3398841 Msa0529670:intron 30.0%
AACCATGTAGATCATAATAG+AGG + chr4_1:3398884-3398903 None:intergenic 30.0%
TTATCTGCTATCTAGCATAA+AGG + chr4_1:3398916-3398935 None:intergenic 30.0%
! ATAATCTAAGACTTGTGTTG+AGG - chr4_1:3398932-3398951 Msa0529670:intron 30.0%
TAGATACTTAGACGACTAAA+TGG + chr4_1:3399074-3399093 None:intergenic 30.0%
TTAGTCGTCTAAGTATCTAA+TGG - chr4_1:3399075-3399094 Msa0529670:intron 30.0%
ATAAGACATACCCAACAAAT+AGG + chr4_1:3399106-3399125 None:intergenic 30.0%
CATAATTGCTTAATTTCCTG+GGG + chr4_1:3399227-3399246 None:intergenic 30.0%
GCATAATTGCTTAATTTCCT+GGG + chr4_1:3399228-3399247 None:intergenic 30.0%
TGCATAATTGCTTAATTTCC+TGG + chr4_1:3399229-3399248 None:intergenic 30.0%
TGTTGTTGTATCAACTATCT+AGG + chr4_1:3399781-3399800 None:intergenic 30.0%
! AGATAGTTGATACAACAACA+CGG - chr4_1:3399781-3399800 Msa0529670:intron 30.0%
! GACATATTGTCGTTTATTAG+GGG + chr4_1:3400093-3400112 None:intergenic 30.0%
! GTGACATATTGTCGTTTATT+AGG + chr4_1:3400095-3400114 None:intergenic 30.0%
ATTTAACGTCTAACACTAAC+TGG - chr4_1:3400164-3400183 Msa0529670:intron 30.0%
! GCCTATTGATGATTTATAGA+TGG + chr4_1:3400235-3400254 None:intergenic 30.0%
ACTCTACCAATTCAAAAAGT+TGG - chr4_1:3400256-3400275 Msa0529670:intron 30.0%
! TAGTGACCAACTTTTTGAAT+TGG + chr4_1:3400265-3400284 None:intergenic 30.0%
GTGCATGAAAAATTTGATGA+TGG + chr4_1:3400288-3400307 None:intergenic 30.0%
! TGAAAATTTTCAGAATTCGG+AGG - chr4_1:3400499-3400518 Msa0529670:intron 30.0%
! TATCGATTGGTATTGTATAC+AGG + chr4_1:3400558-3400577 None:intergenic 30.0%
!! ACTAGTTTCACATAGAGTTT+TGG + chr4_1:3400763-3400782 None:intergenic 30.0%
AAAACTCTATGTGAAACTAG+TGG - chr4_1:3400762-3400781 Msa0529670:CDS 30.0%
TAAATGCAGAAAAGCTTGAA+GGG + chr4_1:3400807-3400826 None:intergenic 30.0%
TTAAATGCAGAAAAGCTTGA+AGG + chr4_1:3400808-3400827 None:intergenic 30.0%
ACAAAACACCAATTGTCTAA+TGG - chr4_1:3400904-3400923 Msa0529670:five_prime_UTR 30.0%
CTCAAAATACTTAAGCAAAG+AGG + chr4_1:3400971-3400990 None:intergenic 30.0%
! CTCTTTGCTTAAGTATTTTG+AGG - chr4_1:3400969-3400988 Msa0529670:five_prime_UTR 30.0%
!! AAATGTATGCGAAGAGTATT+TGG + chr4_1:3401027-3401046 None:intergenic 30.0%
GAGGATGAAGCTAAAATATT+AGG + chr4_1:3401084-3401103 None:intergenic 30.0%
!! ATCAGCTTTTTCTGTATAGA+AGG + chr4_1:3401269-3401288 None:intergenic 30.0%
TAAATGTCATAGAACTTCCA+AGG - chr4_1:3401400-3401419 Msa0529670:intron 30.0%
TACAGAAAAACCATCAGAAT+CGG + chr4_1:3401537-3401556 None:intergenic 30.0%
! TCTGATGGTTTTTCTGTAAA+TGG - chr4_1:3401539-3401558 Msa0529670:five_prime_UTR 30.0%
! TTTTTCTGTAAATGGTACAC+TGG - chr4_1:3401547-3401566 Msa0529670:five_prime_UTR 30.0%
ACATAAAGAAATATCAGACC+TGG - chr4_1:3401577-3401596 Msa0529670:five_prime_UTR 30.0%
TTTCAGCCCTTAAAAAACTT+GGG - chr4_1:3401849-3401868 Msa0529670:five_prime_UTR 30.0%
!! TGAGTAGTTGTTCTAAAACT+AGG - chr4_1:3402536-3402555 Msa0529670:five_prime_UTR 30.0%
ATTGTGTGTGAAAAAACAGA+TGG - chr4_1:3402642-3402661 Msa0529670:intron 30.0%
GAAAAATCATAGACTAAAGG+TGG + chr4_1:3402696-3402715 None:intergenic 30.0%
TGGAAACAAAATTGTACGAA+TGG - chr4_1:3403106-3403125 Msa0529670:intron 30.0%
AGCTGACATGTATATAAGTA+TGG - chr4_1:3403403-3403422 Msa0529670:intron 30.0%
GACATGTATATAAGTATGGA+AGG - chr4_1:3403407-3403426 Msa0529670:intron 30.0%
TATAAGTATGGAAGGAAATG+CGG - chr4_1:3403415-3403434 Msa0529670:intron 30.0%
! AATCTGATTCTGTAGTCTTA+TGG - chr4_1:3403712-3403731 Msa0529670:intron 30.0%
!!! TCGAATGTTGGCTAATTTTT+TGG - chr4_1:3403826-3403845 Msa0529670:intron 30.0%
!! GGATTCTGAGAATATTTTCT+TGG - chr4_1:3403872-3403891 Msa0529670:intron 30.0%
!! TTCTTGGTAACCAATTTTTG+TGG - chr4_1:3403888-3403907 Msa0529670:intron 30.0%
GCAGAAAATTGAAACTCTTA+CGG - chr4_1:3403927-3403946 Msa0529670:intron 30.0%
AAAAAAGTTGACGTGTAACT+AGG + chr4_1:3404137-3404156 None:intergenic 30.0%
! TTTTGTTGAGTTTTACATGC+GGG - chr4_1:3404187-3404206 Msa0529670:intron 30.0%
!! TATCTATCTCCTGGTTTTTA+TGG - chr4_1:3404215-3404234 Msa0529670:intron 30.0%
GTAAAAAAGTTGTCTACCTA+GGG + chr4_1:3404297-3404316 None:intergenic 30.0%
TGTAAAAAAGTTGTCTACCT+AGG + chr4_1:3404298-3404317 None:intergenic 30.0%
AGTTGAAGCATAAACAGAAA+CGG + chr4_1:3404546-3404565 None:intergenic 30.0%
AGACTGTTATGTTATTATCC+AGG - chr4_1:3404584-3404603 Msa0529670:intron 30.0%
AAACATATCTGCTGCTATAT+TGG + chr4_1:3404637-3404656 None:intergenic 30.0%
! CCTTAAACTTTGGTTTAGTT+TGG + chr4_1:3405086-3405105 None:intergenic 30.0%
CCAAACTAAACCAAAGTTTA+AGG - chr4_1:3405083-3405102 Msa0529670:intron 30.0%
TAAACAAGATGTTTCGAAGT+TGG + chr4_1:3405420-3405439 None:intergenic 30.0%
GCATTTCACATGTATTTATC+TGG + chr4_1:3405508-3405527 None:intergenic 30.0%
TAAATACATGTGAAATGCAC+AGG - chr4_1:3405510-3405529 Msa0529670:intron 30.0%
! GTCAATCAATACTAACCTTT+TGG - chr4_1:3405621-3405640 Msa0529670:intron 30.0%
! AATACTAACCTTTTGGATTC+TGG - chr4_1:3405628-3405647 Msa0529670:intron 30.0%
GTCCTTTCAAAAAACACTTT+AGG - chr4_1:3405653-3405672 Msa0529670:intron 30.0%
GGGCACATTTATTTACTTAT+TGG - chr4_1:3405674-3405693 Msa0529670:intron 30.0%
!! TTGTGGAGAATTTCTGAAAT+GGG + chr4_1:3405795-3405814 None:intergenic 30.0%
! ATTCTAAAGAGCAATACATG+CGG + chr4_1:3405881-3405900 None:intergenic 30.0%
!!! TAACGTTGTGCAGTTTTATT+TGG - chr4_1:3406012-3406031 Msa0529670:intron 30.0%
TGTGAATGAAATTATCAGGA+AGG - chr4_1:3406099-3406118 Msa0529670:intron 30.0%
AAATGCAGATAGAATGTTGA+TGG + chr4_1:3406199-3406218 None:intergenic 30.0%
TCATTAAACCATTCATCTTC+AGG + chr4_1:3406308-3406327 None:intergenic 30.0%
TGAAATATGTCAAGATGCTA+TGG - chr4_1:3406325-3406344 Msa0529670:intron 30.0%
AAGATTAAGTGGAAAACCAA+AGG - chr4_1:3406349-3406368 Msa0529670:intron 30.0%
GGAAAACCAAAGGAAATAAA+CGG - chr4_1:3406359-3406378 Msa0529670:intron 30.0%
GAAAACCAAAGGAAATAAAC+GGG - chr4_1:3406360-3406379 Msa0529670:intron 30.0%
AAAACCAAAGGAAATAAACG+GGG - chr4_1:3406361-3406380 Msa0529670:intron 30.0%
TTGGACTGTACTAATTTACA+GGG + chr4_1:3406477-3406496 None:intergenic 30.0%
ATTGGACTGTACTAATTTAC+AGG + chr4_1:3406478-3406497 None:intergenic 30.0%
CCAGTAATTTCATGATAGAT+TGG + chr4_1:3406496-3406515 None:intergenic 30.0%
CCAATCTATCATGAAATTAC+TGG - chr4_1:3406493-3406512 Msa0529670:five_prime_UTR 30.0%
!!! ATTTTTTGTCCCGTCAAATT+TGG - chr4_1:3406649-3406668 Msa0529670:five_prime_UTR 30.0%
AATGGAGTTAAGCTTGAAGA+AGG - chr4_1:3397503-3397522 Msa0529670:exon 35.0%
AACCTTATCATTGAGAGAAG+AGG + chr4_1:3397582-3397601 None:intergenic 35.0%
GCAAGAAACAATGGATCAAA+GGG + chr4_1:3397605-3397624 None:intergenic 35.0%
AGCAAGAAACAATGGATCAA+AGG + chr4_1:3397606-3397625 None:intergenic 35.0%
GTAATCGAAGCAAGAAACAA+TGG + chr4_1:3397614-3397633 None:intergenic 35.0%
! GCTTTCATTTTCCATTCATC+AGG - chr4_1:3397636-3397655 Msa0529670:CDS 35.0%
GAGAATAGGTTAGAAACAAC+GGG - chr4_1:3398008-3398027 Msa0529670:intron 35.0%
AGAATAGGTTAGAAACAACG+GGG - chr4_1:3398009-3398028 Msa0529670:intron 35.0%
GAAAATAAGCCAGAAAAGCT+TGG - chr4_1:3398173-3398192 Msa0529670:intron 35.0%
! ACAATTTTCCCAAGCTTTTC+TGG + chr4_1:3398185-3398204 None:intergenic 35.0%
TGACACTGTTTGTTTGGATT+GGG + chr4_1:3398261-3398280 None:intergenic 35.0%
ATGACACTGTTTGTTTGGAT+TGG + chr4_1:3398262-3398281 None:intergenic 35.0%
!! GCTAACAAGGTTCTAAATTG+TGG - chr4_1:3398625-3398644 Msa0529670:intron 35.0%
! GTTCTAAATTGTGGTTGCTA+TGG - chr4_1:3398634-3398653 Msa0529670:intron 35.0%
TTCGTATACTTGGTTGAACA+GGG - chr4_1:3398832-3398851 Msa0529670:intron 35.0%
TGCCTCTATTATGATCTACA+TGG - chr4_1:3398879-3398898 Msa0529670:intron 35.0%
! GAACATAGTGAAAGAGTACA+AGG - chr4_1:3398985-3399004 Msa0529670:intron 35.0%
GACTACATGGTTATCACAAT+TGG + chr4_1:3399016-3399035 None:intergenic 35.0%
AATGGAAAATTGCGACTACA+TGG + chr4_1:3399029-3399048 None:intergenic 35.0%
!! ATGTCTTATTTACACCATGC+AGG - chr4_1:3399117-3399136 Msa0529670:intron 35.0%
!! TGTCTTATTTACACCATGCA+GGG - chr4_1:3399118-3399137 Msa0529670:intron 35.0%
AACACAAACTAACCGTATGA+AGG + chr4_1:3399321-3399340 None:intergenic 35.0%
CTAGTAAAGAAAGTGGTTCA+AGG - chr4_1:3399378-3399397 Msa0529670:intron 35.0%
TTTGATCTTGTGAAGCAAAG+AGG - chr4_1:3399445-3399464 Msa0529670:intron 35.0%
!! AAGCAAAGAGGTTGTTTTCA+AGG - chr4_1:3399457-3399476 Msa0529670:intron 35.0%
! TTTTTGGATGGTGAGAATGA+GGG + chr4_1:3400202-3400221 None:intergenic 35.0%
!! ATTTTTGGATGGTGAGAATG+AGG + chr4_1:3400203-3400222 None:intergenic 35.0%
! AGATGGAAGTTACGCATTTT+TGG + chr4_1:3400218-3400237 None:intergenic 35.0%
AAAAGAAGACACCCAATTGT+GGG + chr4_1:3400325-3400344 None:intergenic 35.0%
AAAAAGAAGACACCCAATTG+TGG + chr4_1:3400326-3400345 None:intergenic 35.0%
! ATACGTTTGGAATACTGCTT+TGG + chr4_1:3400462-3400481 None:intergenic 35.0%
AAGCAGTATTCCAAACGTAT+AGG - chr4_1:3400462-3400481 Msa0529670:intron 35.0%
! GAAATATTGGCCTATACGTT+TGG + chr4_1:3400475-3400494 None:intergenic 35.0%
ATACCAATCGATACCTGTAT+AGG - chr4_1:3400565-3400584 Msa0529670:CDS 35.0%
ACAAGTGCACATATTAGTGT+CGG - chr4_1:3400601-3400620 Msa0529670:CDS 35.0%
! ATTTTCACATTCGACGATGT+GGG - chr4_1:3400717-3400736 Msa0529670:CDS 35.0%
TAGTGGCTACATAATTCCAT+TGG - chr4_1:3400779-3400798 Msa0529670:CDS 35.0%
!! TATGCGAAGAGTATTTGGAT+TGG + chr4_1:3401022-3401041 None:intergenic 35.0%
TTCTAAATCGGATATCTCCT+TGG + chr4_1:3401420-3401439 None:intergenic 35.0%
AAGGAGATATCCGATTTAGA+AGG - chr4_1:3401419-3401438 Msa0529670:intron 35.0%
TGAAAGCTCACCTTCTAAAT+CGG + chr4_1:3401432-3401451 None:intergenic 35.0%
TTATCGATATCCGATTCTGA+TGG - chr4_1:3401524-3401543 Msa0529670:intron 35.0%
AAATATCAGACCTGGACAAA+TGG - chr4_1:3401585-3401604 Msa0529670:five_prime_UTR 35.0%
! AGTTGAGTTTCCTGATCTTT+TGG - chr4_1:3401610-3401629 Msa0529670:five_prime_UTR 35.0%
AAGAGAACATCCAAAAGATC+AGG + chr4_1:3401623-3401642 None:intergenic 35.0%
! TGATCTTTTGGATGTTCTCT+TGG - chr4_1:3401622-3401641 Msa0529670:five_prime_UTR 35.0%
AGAATTCTATTACCGAACGT+AGG - chr4_1:3401753-3401772 Msa0529670:five_prime_UTR 35.0%
! AGCTAATTTTTGCCTACGTT+CGG + chr4_1:3401768-3401787 None:intergenic 35.0%
GTTTCAGCCCTTAAAAAACT+TGG - chr4_1:3401848-3401867 Msa0529670:five_prime_UTR 35.0%
TTCAGCCCTTAAAAAACTTG+GGG - chr4_1:3401850-3401869 Msa0529670:five_prime_UTR 35.0%
!!! ACCATCCCCAAGTTTTTTAA+GGG + chr4_1:3401858-3401877 None:intergenic 35.0%
AGTATAACATGCAAAGTCTC+CGG - chr4_1:3401924-3401943 Msa0529670:five_prime_UTR 35.0%
!! AGTGACTCATTGGCTATTTT+TGG - chr4_1:3402025-3402044 Msa0529670:five_prime_UTR 35.0%
ATTCTTCTGAACTTGTGATG+TGG - chr4_1:3402062-3402081 Msa0529670:five_prime_UTR 35.0%
TTCTTCTGAACTTGTGATGT+GGG - chr4_1:3402063-3402082 Msa0529670:five_prime_UTR 35.0%
GAGTGTGTTCAAATAGCATT+GGG - chr4_1:3402175-3402194 Msa0529670:five_prime_UTR 35.0%
TCTAATGCTTGTTCAACACT+AGG + chr4_1:3402265-3402284 None:intergenic 35.0%
CATATCCTCCTAATGCTAAT+CGG - chr4_1:3402350-3402369 Msa0529670:five_prime_UTR 35.0%
TTGAAATGCTGTTGTACTAC+CGG + chr4_1:3402380-3402399 None:intergenic 35.0%
AACCATCAAATTGAAGCGAT+GGG + chr4_1:3402422-3402441 None:intergenic 35.0%
!!! TCAGGTGAGACTTTTAGTTT+TGG - chr4_1:3402441-3402460 Msa0529670:five_prime_UTR 35.0%
!! AAAAGCACTACCAGAATCAA+TGG - chr4_1:3403059-3403078 Msa0529670:intron 35.0%
!! TTCTTCTTCTCCATTGATTC+TGG + chr4_1:3403072-3403091 None:intergenic 35.0%
AAAATCGTCATCCTGAACAA+CGG - chr4_1:3403273-3403292 Msa0529670:intron 35.0%
! TTTGAGCCTGATTTTTACAG+AGG - chr4_1:3403361-3403380 Msa0529670:intron 35.0%
!! GATTCCGTCTTTGATTTTTC+AGG - chr4_1:3403451-3403470 Msa0529670:intron 35.0%
!!! TTTTCAGGTATAATGGAACC+TGG - chr4_1:3403466-3403485 Msa0529670:intron 35.0%
! TTTCAGGTATAATGGAACCT+GGG - chr4_1:3403467-3403486 Msa0529670:intron 35.0%
GATATGTGTAACGAGGAAAA+AGG - chr4_1:3403684-3403703 Msa0529670:intron 35.0%
AAGACTACAGAATCAGATTC+TGG + chr4_1:3403711-3403730 None:intergenic 35.0%
! TTTGTTGAGTTTTACATGCG+GGG - chr4_1:3404188-3404207 Msa0529670:intron 35.0%
TATTCCACTCCATAAAAACC+AGG + chr4_1:3404227-3404246 None:intergenic 35.0%
!!! TTTTACATCTTAGTGGGTTC+AGG - chr4_1:3404311-3404330 Msa0529670:intron 35.0%
!! TCAGTTTTATGAAAAGCTCC+TGG + chr4_1:3404605-3404624 None:intergenic 35.0%
ATAGCAGCAGATATGTTTGT+AGG - chr4_1:3404639-3404658 Msa0529670:intron 35.0%
TAGCAGCAGATATGTTTGTA+GGG - chr4_1:3404640-3404659 Msa0529670:intron 35.0%
! TTTCAGAAGATCAGAGCTTT+TGG - chr4_1:3404721-3404740 Msa0529670:five_prime_UTR 35.0%
! TTCAGAAGATCAGAGCTTTT+GGG - chr4_1:3404722-3404741 Msa0529670:five_prime_UTR 35.0%
!!! TTTTGGGATGATATTGAGGA+AGG - chr4_1:3404738-3404757 Msa0529670:intron 35.0%
! TTTGGGATGATATTGAGGAA+GGG - chr4_1:3404739-3404758 Msa0529670:intron 35.0%
CTGAAACACTGATACCTAAT+AGG - chr4_1:3404852-3404871 Msa0529670:intron 35.0%
GAATCAATTCGTGTCCTATT+AGG + chr4_1:3404869-3404888 None:intergenic 35.0%
! TGTTTAAACCACTGGTTGTT+AGG + chr4_1:3404986-3405005 None:intergenic 35.0%
TTTGGATACTCTGCATTCTT+CGG + chr4_1:3405068-3405087 None:intergenic 35.0%
AAGAAACTTAGCTGTGTATG+TGG + chr4_1:3405209-3405228 None:intergenic 35.0%
TGTTCATTGTATCAAGCACA+CGG - chr4_1:3405590-3405609 Msa0529670:intron 35.0%
!!! GCCCTAAAGTGTTTTTTGAA+AGG + chr4_1:3405658-3405677 None:intergenic 35.0%
!! TGTGGAGAAGTTTCTGAAAT+GGG + chr4_1:3405717-3405736 None:intergenic 35.0%
! TTGTGGAGAAGTTTCTGAAA+TGG + chr4_1:3405718-3405737 None:intergenic 35.0%
! GTTGTGGAGAATTTCTGAAA+TGG + chr4_1:3405796-3405815 None:intergenic 35.0%
AGTTTGCGTCTATTGATCTT+CGG + chr4_1:3405937-3405956 None:intergenic 35.0%
!! AGAATGTTGATGGTGAAACA+TGG + chr4_1:3406189-3406208 None:intergenic 35.0%
GCATTTGCAATTGTTTCCAT+TGG - chr4_1:3406213-3406232 Msa0529670:intron 35.0%
ATTGTTTCCATTGGAAGTTG+TGG - chr4_1:3406222-3406241 Msa0529670:intron 35.0%
GATGCTATGGAAAGATTAAG+TGG - chr4_1:3406338-3406357 Msa0529670:intron 35.0%
AATGGAGTTAAGCTTGAAGA+AGG - chr4_1:3397503-3397522 Msa0529670:exon 35.0%
AACCTTATCATTGAGAGAAG+AGG + chr4_1:3397582-3397601 None:intergenic 35.0%
GCAAGAAACAATGGATCAAA+GGG + chr4_1:3397605-3397624 None:intergenic 35.0%
AGCAAGAAACAATGGATCAA+AGG + chr4_1:3397606-3397625 None:intergenic 35.0%
GTAATCGAAGCAAGAAACAA+TGG + chr4_1:3397614-3397633 None:intergenic 35.0%
! GCTTTCATTTTCCATTCATC+AGG - chr4_1:3397636-3397655 Msa0529670:CDS 35.0%
GAGAATAGGTTAGAAACAAC+GGG - chr4_1:3398008-3398027 Msa0529670:intron 35.0%
AGAATAGGTTAGAAACAACG+GGG - chr4_1:3398009-3398028 Msa0529670:intron 35.0%
GAAAATAAGCCAGAAAAGCT+TGG - chr4_1:3398173-3398192 Msa0529670:intron 35.0%
! ACAATTTTCCCAAGCTTTTC+TGG + chr4_1:3398185-3398204 None:intergenic 35.0%
TGACACTGTTTGTTTGGATT+GGG + chr4_1:3398261-3398280 None:intergenic 35.0%
ATGACACTGTTTGTTTGGAT+TGG + chr4_1:3398262-3398281 None:intergenic 35.0%
!! GCTAACAAGGTTCTAAATTG+TGG - chr4_1:3398625-3398644 Msa0529670:intron 35.0%
! GTTCTAAATTGTGGTTGCTA+TGG - chr4_1:3398634-3398653 Msa0529670:intron 35.0%
TTCGTATACTTGGTTGAACA+GGG - chr4_1:3398832-3398851 Msa0529670:intron 35.0%
TGCCTCTATTATGATCTACA+TGG - chr4_1:3398879-3398898 Msa0529670:intron 35.0%
! GAACATAGTGAAAGAGTACA+AGG - chr4_1:3398985-3399004 Msa0529670:intron 35.0%
GACTACATGGTTATCACAAT+TGG + chr4_1:3399016-3399035 None:intergenic 35.0%
AATGGAAAATTGCGACTACA+TGG + chr4_1:3399029-3399048 None:intergenic 35.0%
!! ATGTCTTATTTACACCATGC+AGG - chr4_1:3399117-3399136 Msa0529670:intron 35.0%
!! TGTCTTATTTACACCATGCA+GGG - chr4_1:3399118-3399137 Msa0529670:intron 35.0%
AACACAAACTAACCGTATGA+AGG + chr4_1:3399321-3399340 None:intergenic 35.0%
CTAGTAAAGAAAGTGGTTCA+AGG - chr4_1:3399378-3399397 Msa0529670:intron 35.0%
TTTGATCTTGTGAAGCAAAG+AGG - chr4_1:3399445-3399464 Msa0529670:intron 35.0%
!! AAGCAAAGAGGTTGTTTTCA+AGG - chr4_1:3399457-3399476 Msa0529670:intron 35.0%
! TTTTTGGATGGTGAGAATGA+GGG + chr4_1:3400202-3400221 None:intergenic 35.0%
!! ATTTTTGGATGGTGAGAATG+AGG + chr4_1:3400203-3400222 None:intergenic 35.0%
! AGATGGAAGTTACGCATTTT+TGG + chr4_1:3400218-3400237 None:intergenic 35.0%
AAAAGAAGACACCCAATTGT+GGG + chr4_1:3400325-3400344 None:intergenic 35.0%
AAAAAGAAGACACCCAATTG+TGG + chr4_1:3400326-3400345 None:intergenic 35.0%
! ATACGTTTGGAATACTGCTT+TGG + chr4_1:3400462-3400481 None:intergenic 35.0%
AAGCAGTATTCCAAACGTAT+AGG - chr4_1:3400462-3400481 Msa0529670:intron 35.0%
! GAAATATTGGCCTATACGTT+TGG + chr4_1:3400475-3400494 None:intergenic 35.0%
ATACCAATCGATACCTGTAT+AGG - chr4_1:3400565-3400584 Msa0529670:CDS 35.0%
ACAAGTGCACATATTAGTGT+CGG - chr4_1:3400601-3400620 Msa0529670:CDS 35.0%
! ATTTTCACATTCGACGATGT+GGG - chr4_1:3400717-3400736 Msa0529670:CDS 35.0%
TAGTGGCTACATAATTCCAT+TGG - chr4_1:3400779-3400798 Msa0529670:CDS 35.0%
!! TATGCGAAGAGTATTTGGAT+TGG + chr4_1:3401022-3401041 None:intergenic 35.0%
TTCTAAATCGGATATCTCCT+TGG + chr4_1:3401420-3401439 None:intergenic 35.0%
AAGGAGATATCCGATTTAGA+AGG - chr4_1:3401419-3401438 Msa0529670:intron 35.0%
TGAAAGCTCACCTTCTAAAT+CGG + chr4_1:3401432-3401451 None:intergenic 35.0%
TTATCGATATCCGATTCTGA+TGG - chr4_1:3401524-3401543 Msa0529670:intron 35.0%
AAATATCAGACCTGGACAAA+TGG - chr4_1:3401585-3401604 Msa0529670:five_prime_UTR 35.0%
! AGTTGAGTTTCCTGATCTTT+TGG - chr4_1:3401610-3401629 Msa0529670:five_prime_UTR 35.0%
AAGAGAACATCCAAAAGATC+AGG + chr4_1:3401623-3401642 None:intergenic 35.0%
! TGATCTTTTGGATGTTCTCT+TGG - chr4_1:3401622-3401641 Msa0529670:five_prime_UTR 35.0%
AGAATTCTATTACCGAACGT+AGG - chr4_1:3401753-3401772 Msa0529670:five_prime_UTR 35.0%
! AGCTAATTTTTGCCTACGTT+CGG + chr4_1:3401768-3401787 None:intergenic 35.0%
GTTTCAGCCCTTAAAAAACT+TGG - chr4_1:3401848-3401867 Msa0529670:five_prime_UTR 35.0%
TTCAGCCCTTAAAAAACTTG+GGG - chr4_1:3401850-3401869 Msa0529670:five_prime_UTR 35.0%
!!! ACCATCCCCAAGTTTTTTAA+GGG + chr4_1:3401858-3401877 None:intergenic 35.0%
AGTATAACATGCAAAGTCTC+CGG - chr4_1:3401924-3401943 Msa0529670:five_prime_UTR 35.0%
!! AGTGACTCATTGGCTATTTT+TGG - chr4_1:3402025-3402044 Msa0529670:five_prime_UTR 35.0%
ATTCTTCTGAACTTGTGATG+TGG - chr4_1:3402062-3402081 Msa0529670:five_prime_UTR 35.0%
TTCTTCTGAACTTGTGATGT+GGG - chr4_1:3402063-3402082 Msa0529670:five_prime_UTR 35.0%
GAGTGTGTTCAAATAGCATT+GGG - chr4_1:3402175-3402194 Msa0529670:five_prime_UTR 35.0%
TCTAATGCTTGTTCAACACT+AGG + chr4_1:3402265-3402284 None:intergenic 35.0%
CATATCCTCCTAATGCTAAT+CGG - chr4_1:3402350-3402369 Msa0529670:five_prime_UTR 35.0%
TTGAAATGCTGTTGTACTAC+CGG + chr4_1:3402380-3402399 None:intergenic 35.0%
AACCATCAAATTGAAGCGAT+GGG + chr4_1:3402422-3402441 None:intergenic 35.0%
!!! TCAGGTGAGACTTTTAGTTT+TGG - chr4_1:3402441-3402460 Msa0529670:five_prime_UTR 35.0%
!! AAAAGCACTACCAGAATCAA+TGG - chr4_1:3403059-3403078 Msa0529670:intron 35.0%
!! TTCTTCTTCTCCATTGATTC+TGG + chr4_1:3403072-3403091 None:intergenic 35.0%
AAAATCGTCATCCTGAACAA+CGG - chr4_1:3403273-3403292 Msa0529670:intron 35.0%
! TTTGAGCCTGATTTTTACAG+AGG - chr4_1:3403361-3403380 Msa0529670:intron 35.0%
!! GATTCCGTCTTTGATTTTTC+AGG - chr4_1:3403451-3403470 Msa0529670:intron 35.0%
!!! TTTTCAGGTATAATGGAACC+TGG - chr4_1:3403466-3403485 Msa0529670:intron 35.0%
! TTTCAGGTATAATGGAACCT+GGG - chr4_1:3403467-3403486 Msa0529670:intron 35.0%
GATATGTGTAACGAGGAAAA+AGG - chr4_1:3403684-3403703 Msa0529670:intron 35.0%
AAGACTACAGAATCAGATTC+TGG + chr4_1:3403711-3403730 None:intergenic 35.0%
! TTTGTTGAGTTTTACATGCG+GGG - chr4_1:3404188-3404207 Msa0529670:intron 35.0%
TATTCCACTCCATAAAAACC+AGG + chr4_1:3404227-3404246 None:intergenic 35.0%
!!! TTTTACATCTTAGTGGGTTC+AGG - chr4_1:3404311-3404330 Msa0529670:intron 35.0%
!! TCAGTTTTATGAAAAGCTCC+TGG + chr4_1:3404605-3404624 None:intergenic 35.0%
ATAGCAGCAGATATGTTTGT+AGG - chr4_1:3404639-3404658 Msa0529670:intron 35.0%
TAGCAGCAGATATGTTTGTA+GGG - chr4_1:3404640-3404659 Msa0529670:intron 35.0%
! TTTCAGAAGATCAGAGCTTT+TGG - chr4_1:3404721-3404740 Msa0529670:five_prime_UTR 35.0%
! TTCAGAAGATCAGAGCTTTT+GGG - chr4_1:3404722-3404741 Msa0529670:five_prime_UTR 35.0%
!!! TTTTGGGATGATATTGAGGA+AGG - chr4_1:3404738-3404757 Msa0529670:intron 35.0%
! TTTGGGATGATATTGAGGAA+GGG - chr4_1:3404739-3404758 Msa0529670:intron 35.0%
CTGAAACACTGATACCTAAT+AGG - chr4_1:3404852-3404871 Msa0529670:intron 35.0%
GAATCAATTCGTGTCCTATT+AGG + chr4_1:3404869-3404888 None:intergenic 35.0%
! TGTTTAAACCACTGGTTGTT+AGG + chr4_1:3404986-3405005 None:intergenic 35.0%
TTTGGATACTCTGCATTCTT+CGG + chr4_1:3405068-3405087 None:intergenic 35.0%
AAGAAACTTAGCTGTGTATG+TGG + chr4_1:3405209-3405228 None:intergenic 35.0%
TGTTCATTGTATCAAGCACA+CGG - chr4_1:3405590-3405609 Msa0529670:intron 35.0%
!!! GCCCTAAAGTGTTTTTTGAA+AGG + chr4_1:3405658-3405677 None:intergenic 35.0%
!! TGTGGAGAAGTTTCTGAAAT+GGG + chr4_1:3405717-3405736 None:intergenic 35.0%
! TTGTGGAGAAGTTTCTGAAA+TGG + chr4_1:3405718-3405737 None:intergenic 35.0%
! GTTGTGGAGAATTTCTGAAA+TGG + chr4_1:3405796-3405815 None:intergenic 35.0%
AGTTTGCGTCTATTGATCTT+CGG + chr4_1:3405937-3405956 None:intergenic 35.0%
!! AGAATGTTGATGGTGAAACA+TGG + chr4_1:3406189-3406208 None:intergenic 35.0%
GCATTTGCAATTGTTTCCAT+TGG - chr4_1:3406213-3406232 Msa0529670:intron 35.0%
ATTGTTTCCATTGGAAGTTG+TGG - chr4_1:3406222-3406241 Msa0529670:intron 35.0%
GATGCTATGGAAAGATTAAG+TGG - chr4_1:3406338-3406357 Msa0529670:intron 35.0%
TCTCTATGATCCTAACCAAG+CGG + chr4_1:3397237-3397256 None:intergenic 40.0%
TCTCCTTCGTGATCTTGTTA+TGG - chr4_1:3397418-3397437 Msa0529670:three_prime_UTR 40.0%
CGATGATGAAGTCATCTTCA+CGG - chr4_1:3397450-3397469 Msa0529670:three_prime_UTR 40.0%
CTTATCATTGAGAGAAGAGG+TGG + chr4_1:3397579-3397598 None:intergenic 40.0%
CACCTCTTCTCTCAATGATA+AGG - chr4_1:3397577-3397596 Msa0529670:CDS 40.0%
CATGTGACACATGTTTGGAT+TGG + chr4_1:3398345-3398364 None:intergenic 40.0%
! CCAACATTTTCTATCGAAGG+CGG - chr4_1:3398372-3398391 Msa0529670:intron 40.0%
TGAAGGTAATCACGTGTGTT+GGG + chr4_1:3398443-3398462 None:intergenic 40.0%
TTGAAGGTAATCACGTGTGT+TGG + chr4_1:3398444-3398463 None:intergenic 40.0%
CAATTGCGACAACAAGATAC+AGG + chr4_1:3398705-3398724 None:intergenic 40.0%
GGATATTAGCTGGTATCATC+TGG + chr4_1:3398763-3398782 None:intergenic 40.0%
GATTGACAGAGGATATTAGC+TGG + chr4_1:3398773-3398792 None:intergenic 40.0%
GTTCGTATACTTGGTTGAAC+AGG - chr4_1:3398831-3398850 Msa0529670:intron 40.0%
! CTCTTTTTCTCTTTTTCCCC+AGG - chr4_1:3399208-3399227 Msa0529670:CDS 40.0%
CTAACTATGCAGCCTTCATA+CGG - chr4_1:3399306-3399325 Msa0529670:CDS 40.0%
GGTACAAACACATCTTTCTC+TGG - chr4_1:3400012-3400031 Msa0529670:intron 40.0%
! TTTTGGATGGTGAGAATGAG+GGG + chr4_1:3400201-3400220 None:intergenic 40.0%
!! GGAAGTTACGCATTTTTGGA+TGG + chr4_1:3400214-3400233 None:intergenic 40.0%
TCATGACATGATGAAGAGCA+AGG - chr4_1:3400391-3400410 Msa0529670:intron 40.0%
!! CTTCCTATACAGGTATCGAT+TGG + chr4_1:3400571-3400590 None:intergenic 40.0%
GTGCAATACTCTTCCTATAC+AGG + chr4_1:3400581-3400600 None:intergenic 40.0%
! GCACATATTAGTGTCGGATA+CGG - chr4_1:3400607-3400626 Msa0529670:CDS 40.0%
! CACATATTAGTGTCGGATAC+GGG - chr4_1:3400608-3400627 Msa0529670:CDS 40.0%
! GATTTTCACATTCGACGATG+TGG - chr4_1:3400716-3400735 Msa0529670:CDS 40.0%
! TTTTCACATTCGACGATGTG+GGG - chr4_1:3400718-3400737 Msa0529670:CDS 40.0%
!! AGAGTTTTGGCAATACGAAG+TGG + chr4_1:3400750-3400769 None:intergenic 40.0%
! TTGGATTTGCTCAAAGCATG+CGG - chr4_1:3400845-3400864 Msa0529670:exon 40.0%
CCACTTTGCCATTAGACAAT+TGG + chr4_1:3400915-3400934 None:intergenic 40.0%
CCAATTGTCTAATGGCAAAG+TGG - chr4_1:3400912-3400931 Msa0529670:five_prime_UTR 40.0%
! AGGAAGTACAATCCAGAACT+GGG + chr4_1:3400951-3400970 None:intergenic 40.0%
!! TATTTTGAGGGTGCAGAAGA+GGG - chr4_1:3400982-3401001 Msa0529670:five_prime_UTR 40.0%
GAGAATTATCTCCCTGTATG+TGG - chr4_1:3401190-3401209 Msa0529670:intron 40.0%
CCAGATTTACACCACATACA+GGG + chr4_1:3401204-3401223 None:intergenic 40.0%
CCTGTATGTGGTGTAAATCT+GGG - chr4_1:3401202-3401221 Msa0529670:intron 40.0%
ATGTGGTGTAAATCTGGGTA+TGG - chr4_1:3401207-3401226 Msa0529670:intron 40.0%
AGTGGATAGTAGGTTTCTGA+TGG + chr4_1:3401456-3401475 None:intergenic 40.0%
ATGTATCAAGGTTGCTTGAG+TGG + chr4_1:3401474-3401493 None:intergenic 40.0%
ACTCAAGCAACCTTGATACA+TGG - chr4_1:3401473-3401492 Msa0529670:intron 40.0%
AGCAACCTTGATACATGGTT+TGG - chr4_1:3401478-3401497 Msa0529670:intron 40.0%
TGAATCGATGTGAACTCCAT+CGG + chr4_1:3401504-3401523 None:intergenic 40.0%
ACTCAACTAACCATTTGTCC+AGG + chr4_1:3401598-3401617 None:intergenic 40.0%
GCAGAGACAGAAGTAAAGAT+GGG + chr4_1:3401733-3401752 None:intergenic 40.0%
TGCAGAGACAGAAGTAAAGA+TGG + chr4_1:3401734-3401753 None:intergenic 40.0%
!!! GACCATCCCCAAGTTTTTTA+AGG + chr4_1:3401859-3401878 None:intergenic 40.0%
AGTATATGCTCCTCCATATG+AGG + chr4_1:3401960-3401979 None:intergenic 40.0%
!!! CTCATTGGCTATTTTTGGTG+AGG - chr4_1:3402030-3402049 Msa0529670:five_prime_UTR 40.0%
ACAAGTTCAGAAGAATACGC+TGG + chr4_1:3402058-3402077 None:intergenic 40.0%
!! AACAGAAGCATTTGCTCTTC+TGG - chr4_1:3402096-3402115 Msa0529670:five_prime_UTR 40.0%
CATTTGCTCTTCTGGTGAAA+AGG - chr4_1:3402104-3402123 Msa0529670:five_prime_UTR 40.0%
GGAGTGTGTTCAAATAGCAT+TGG - chr4_1:3402174-3402193 Msa0529670:five_prime_UTR 40.0%
TGCTCATTATTAGAAGCTCG+TGG - chr4_1:3402202-3402221 Msa0529670:five_prime_UTR 40.0%
GAACCATCAAATTGAAGCGA+TGG + chr4_1:3402423-3402442 None:intergenic 40.0%
! TCGCTTCAATTTGATGGTTC+AGG - chr4_1:3402423-3402442 Msa0529670:five_prime_UTR 40.0%
AATAGTGATATAGCAGCCGT+TGG - chr4_1:3402506-3402525 Msa0529670:five_prime_UTR 40.0%
ATAGTGATATAGCAGCCGTT+GGG - chr4_1:3402507-3402526 Msa0529670:five_prime_UTR 40.0%
AACTACTCACATTGTCCCAA+CGG + chr4_1:3402525-3402544 None:intergenic 40.0%
CAAACTACATAAGGGAAACG+TGG + chr4_1:3402885-3402904 None:intergenic 40.0%
CGTTTCCCTTATGTAGTTTG+TGG - chr4_1:3402885-3402904 Msa0529670:intron 40.0%
GCTTATACAGGACTTCTTTG+AGG - chr4_1:3402948-3402967 Msa0529670:intron 40.0%
TGGAGAAGAAGAAAGCTTTG+AGG - chr4_1:3403079-3403098 Msa0529670:intron 40.0%
!! GAAGAAAGCTTTGAGGATTC+TGG - chr4_1:3403086-3403105 Msa0529670:intron 40.0%
TAGTTCATCAGCCAGTAATG+AGG + chr4_1:3403171-3403190 None:intergenic 40.0%
CTTACAGGGATCTTGGTTTA+GGG + chr4_1:3403222-3403241 None:intergenic 40.0%
TATCATCCTTACAGGGATCT+TGG + chr4_1:3403229-3403248 None:intergenic 40.0%
CTACGGTTATCATCCTTACA+GGG + chr4_1:3403236-3403255 None:intergenic 40.0%
TCTACGGTTATCATCCTTAC+AGG + chr4_1:3403237-3403256 None:intergenic 40.0%
! ATGACGATTTTGCCTTTCTG+TGG + chr4_1:3403264-3403283 None:intergenic 40.0%
AAATCGTCATCCTGAACAAC+GGG - chr4_1:3403274-3403293 Msa0529670:intron 40.0%
AAATCAGGCTCAAAGCATGT+TGG + chr4_1:3403355-3403374 None:intergenic 40.0%
! AGCCTGATTTTTACAGAGGA+TGG - chr4_1:3403365-3403384 Msa0529670:intron 40.0%
CACCATCCTCTGTAAAAATC+AGG + chr4_1:3403370-3403389 None:intergenic 40.0%
GAAATGCGGATGAAGTTGAA+TGG - chr4_1:3403429-3403448 Msa0529670:intron 40.0%
CACTCGATGAAGAATGAACA+AGG + chr4_1:3403546-3403565 None:intergenic 40.0%
ACACTTCTCATGCATAACAC+TGG + chr4_1:3403594-3403613 None:intergenic 40.0%
! CCTGCTCTTTTCTTCTTGTT+GGG - chr4_1:3403646-3403665 Msa0529670:intron 40.0%
TTGTTGGGAACTTCTCTGTT+GGG - chr4_1:3403661-3403680 Msa0529670:intron 40.0%
AACATTCGAAACTGTGGACA+AGG + chr4_1:3403815-3403834 None:intergenic 40.0%
TTGTCCACAGTTTCGAATGT+TGG - chr4_1:3403814-3403833 Msa0529670:intron 40.0%
TTAGCCAACATTCGAAACTG+TGG + chr4_1:3403821-3403840 None:intergenic 40.0%
ATTTCCTTCTGTGGACAAAG+AGG + chr4_1:3404095-3404114 None:intergenic 40.0%
!! ATCTCCTGGTTTTTATGGAG+TGG - chr4_1:3404220-3404239 Msa0529670:intron 40.0%
AGCAGATATGTTTGTAGGGA+GGG - chr4_1:3404644-3404663 Msa0529670:intron 40.0%
!!! GAGCTTTTGGGATGATATTG+AGG - chr4_1:3404734-3404753 Msa0529670:intron 40.0%
! ATTTGGGACGCATCTTTGTA+AGG - chr4_1:3404914-3404933 Msa0529670:intron 40.0%
!! CATCTTTGTAAGGCTAGTCT+TGG - chr4_1:3404924-3404943 Msa0529670:intron 40.0%
TGGTTGTTAGGAACTTGGAT+AGG + chr4_1:3404974-3404993 None:intergenic 40.0%
!! GAAGTTTCTGAAATGGGTGT+TGG + chr4_1:3405711-3405730 None:intergenic 40.0%
AGCAATACATGCGGTTATGT+TGG + chr4_1:3405872-3405891 None:intergenic 40.0%
! ATGTCAGCATTTTCTGCAAC+AGG - chr4_1:3406124-3406143 Msa0529670:intron 40.0%
! TGTCAGCATTTTCTGCAACA+GGG - chr4_1:3406125-3406144 Msa0529670:intron 40.0%
! ATGATGTTTTTCTCACCCCT+TGG - chr4_1:3406559-3406578 Msa0529670:five_prime_UTR 40.0%
!! AAAAATGAAAGGGGTGCCAA+GGG + chr4_1:3406578-3406597 None:intergenic 40.0%
AAACGCAAGCCAAATTTGAC+GGG + chr4_1:3406661-3406680 None:intergenic 40.0%
CAAACGCAAGCCAAATTTGA+CGG + chr4_1:3406662-3406681 None:intergenic 40.0%
TCTCTATGATCCTAACCAAG+CGG + chr4_1:3397237-3397256 None:intergenic 40.0%
TCTCCTTCGTGATCTTGTTA+TGG - chr4_1:3397418-3397437 Msa0529670:three_prime_UTR 40.0%
CGATGATGAAGTCATCTTCA+CGG - chr4_1:3397450-3397469 Msa0529670:three_prime_UTR 40.0%
CTTATCATTGAGAGAAGAGG+TGG + chr4_1:3397579-3397598 None:intergenic 40.0%
CACCTCTTCTCTCAATGATA+AGG - chr4_1:3397577-3397596 Msa0529670:CDS 40.0%
CATGTGACACATGTTTGGAT+TGG + chr4_1:3398345-3398364 None:intergenic 40.0%
! CCAACATTTTCTATCGAAGG+CGG - chr4_1:3398372-3398391 Msa0529670:intron 40.0%
TGAAGGTAATCACGTGTGTT+GGG + chr4_1:3398443-3398462 None:intergenic 40.0%
TTGAAGGTAATCACGTGTGT+TGG + chr4_1:3398444-3398463 None:intergenic 40.0%
CAATTGCGACAACAAGATAC+AGG + chr4_1:3398705-3398724 None:intergenic 40.0%
GGATATTAGCTGGTATCATC+TGG + chr4_1:3398763-3398782 None:intergenic 40.0%
GATTGACAGAGGATATTAGC+TGG + chr4_1:3398773-3398792 None:intergenic 40.0%
GTTCGTATACTTGGTTGAAC+AGG - chr4_1:3398831-3398850 Msa0529670:intron 40.0%
! CTCTTTTTCTCTTTTTCCCC+AGG - chr4_1:3399208-3399227 Msa0529670:CDS 40.0%
CTAACTATGCAGCCTTCATA+CGG - chr4_1:3399306-3399325 Msa0529670:CDS 40.0%
GGTACAAACACATCTTTCTC+TGG - chr4_1:3400012-3400031 Msa0529670:intron 40.0%
! TTTTGGATGGTGAGAATGAG+GGG + chr4_1:3400201-3400220 None:intergenic 40.0%
!! GGAAGTTACGCATTTTTGGA+TGG + chr4_1:3400214-3400233 None:intergenic 40.0%
TCATGACATGATGAAGAGCA+AGG - chr4_1:3400391-3400410 Msa0529670:intron 40.0%
!! CTTCCTATACAGGTATCGAT+TGG + chr4_1:3400571-3400590 None:intergenic 40.0%
GTGCAATACTCTTCCTATAC+AGG + chr4_1:3400581-3400600 None:intergenic 40.0%
! GCACATATTAGTGTCGGATA+CGG - chr4_1:3400607-3400626 Msa0529670:CDS 40.0%
! CACATATTAGTGTCGGATAC+GGG - chr4_1:3400608-3400627 Msa0529670:CDS 40.0%
! GATTTTCACATTCGACGATG+TGG - chr4_1:3400716-3400735 Msa0529670:CDS 40.0%
! TTTTCACATTCGACGATGTG+GGG - chr4_1:3400718-3400737 Msa0529670:CDS 40.0%
!! AGAGTTTTGGCAATACGAAG+TGG + chr4_1:3400750-3400769 None:intergenic 40.0%
! TTGGATTTGCTCAAAGCATG+CGG - chr4_1:3400845-3400864 Msa0529670:exon 40.0%
CCACTTTGCCATTAGACAAT+TGG + chr4_1:3400915-3400934 None:intergenic 40.0%
CCAATTGTCTAATGGCAAAG+TGG - chr4_1:3400912-3400931 Msa0529670:five_prime_UTR 40.0%
! AGGAAGTACAATCCAGAACT+GGG + chr4_1:3400951-3400970 None:intergenic 40.0%
!! TATTTTGAGGGTGCAGAAGA+GGG - chr4_1:3400982-3401001 Msa0529670:five_prime_UTR 40.0%
GAGAATTATCTCCCTGTATG+TGG - chr4_1:3401190-3401209 Msa0529670:intron 40.0%
CCAGATTTACACCACATACA+GGG + chr4_1:3401204-3401223 None:intergenic 40.0%
CCTGTATGTGGTGTAAATCT+GGG - chr4_1:3401202-3401221 Msa0529670:intron 40.0%
ATGTGGTGTAAATCTGGGTA+TGG - chr4_1:3401207-3401226 Msa0529670:intron 40.0%
AGTGGATAGTAGGTTTCTGA+TGG + chr4_1:3401456-3401475 None:intergenic 40.0%
ATGTATCAAGGTTGCTTGAG+TGG + chr4_1:3401474-3401493 None:intergenic 40.0%
ACTCAAGCAACCTTGATACA+TGG - chr4_1:3401473-3401492 Msa0529670:intron 40.0%
AGCAACCTTGATACATGGTT+TGG - chr4_1:3401478-3401497 Msa0529670:intron 40.0%
TGAATCGATGTGAACTCCAT+CGG + chr4_1:3401504-3401523 None:intergenic 40.0%
ACTCAACTAACCATTTGTCC+AGG + chr4_1:3401598-3401617 None:intergenic 40.0%
GCAGAGACAGAAGTAAAGAT+GGG + chr4_1:3401733-3401752 None:intergenic 40.0%
TGCAGAGACAGAAGTAAAGA+TGG + chr4_1:3401734-3401753 None:intergenic 40.0%
!!! GACCATCCCCAAGTTTTTTA+AGG + chr4_1:3401859-3401878 None:intergenic 40.0%
AGTATATGCTCCTCCATATG+AGG + chr4_1:3401960-3401979 None:intergenic 40.0%
!!! CTCATTGGCTATTTTTGGTG+AGG - chr4_1:3402030-3402049 Msa0529670:five_prime_UTR 40.0%
ACAAGTTCAGAAGAATACGC+TGG + chr4_1:3402058-3402077 None:intergenic 40.0%
!! AACAGAAGCATTTGCTCTTC+TGG - chr4_1:3402096-3402115 Msa0529670:five_prime_UTR 40.0%
CATTTGCTCTTCTGGTGAAA+AGG - chr4_1:3402104-3402123 Msa0529670:five_prime_UTR 40.0%
GGAGTGTGTTCAAATAGCAT+TGG - chr4_1:3402174-3402193 Msa0529670:five_prime_UTR 40.0%
TGCTCATTATTAGAAGCTCG+TGG - chr4_1:3402202-3402221 Msa0529670:five_prime_UTR 40.0%
GAACCATCAAATTGAAGCGA+TGG + chr4_1:3402423-3402442 None:intergenic 40.0%
! TCGCTTCAATTTGATGGTTC+AGG - chr4_1:3402423-3402442 Msa0529670:five_prime_UTR 40.0%
AATAGTGATATAGCAGCCGT+TGG - chr4_1:3402506-3402525 Msa0529670:five_prime_UTR 40.0%
ATAGTGATATAGCAGCCGTT+GGG - chr4_1:3402507-3402526 Msa0529670:five_prime_UTR 40.0%
AACTACTCACATTGTCCCAA+CGG + chr4_1:3402525-3402544 None:intergenic 40.0%
CAAACTACATAAGGGAAACG+TGG + chr4_1:3402885-3402904 None:intergenic 40.0%
CGTTTCCCTTATGTAGTTTG+TGG - chr4_1:3402885-3402904 Msa0529670:intron 40.0%
GCTTATACAGGACTTCTTTG+AGG - chr4_1:3402948-3402967 Msa0529670:intron 40.0%
TGGAGAAGAAGAAAGCTTTG+AGG - chr4_1:3403079-3403098 Msa0529670:intron 40.0%
!! GAAGAAAGCTTTGAGGATTC+TGG - chr4_1:3403086-3403105 Msa0529670:intron 40.0%
TAGTTCATCAGCCAGTAATG+AGG + chr4_1:3403171-3403190 None:intergenic 40.0%
CTTACAGGGATCTTGGTTTA+GGG + chr4_1:3403222-3403241 None:intergenic 40.0%
TATCATCCTTACAGGGATCT+TGG + chr4_1:3403229-3403248 None:intergenic 40.0%
CTACGGTTATCATCCTTACA+GGG + chr4_1:3403236-3403255 None:intergenic 40.0%
TCTACGGTTATCATCCTTAC+AGG + chr4_1:3403237-3403256 None:intergenic 40.0%
! ATGACGATTTTGCCTTTCTG+TGG + chr4_1:3403264-3403283 None:intergenic 40.0%
AAATCGTCATCCTGAACAAC+GGG - chr4_1:3403274-3403293 Msa0529670:intron 40.0%
AAATCAGGCTCAAAGCATGT+TGG + chr4_1:3403355-3403374 None:intergenic 40.0%
! AGCCTGATTTTTACAGAGGA+TGG - chr4_1:3403365-3403384 Msa0529670:intron 40.0%
CACCATCCTCTGTAAAAATC+AGG + chr4_1:3403370-3403389 None:intergenic 40.0%
GAAATGCGGATGAAGTTGAA+TGG - chr4_1:3403429-3403448 Msa0529670:intron 40.0%
CACTCGATGAAGAATGAACA+AGG + chr4_1:3403546-3403565 None:intergenic 40.0%
ACACTTCTCATGCATAACAC+TGG + chr4_1:3403594-3403613 None:intergenic 40.0%
! CCTGCTCTTTTCTTCTTGTT+GGG - chr4_1:3403646-3403665 Msa0529670:intron 40.0%
TTGTTGGGAACTTCTCTGTT+GGG - chr4_1:3403661-3403680 Msa0529670:intron 40.0%
AACATTCGAAACTGTGGACA+AGG + chr4_1:3403815-3403834 None:intergenic 40.0%
TTGTCCACAGTTTCGAATGT+TGG - chr4_1:3403814-3403833 Msa0529670:intron 40.0%
TTAGCCAACATTCGAAACTG+TGG + chr4_1:3403821-3403840 None:intergenic 40.0%
ATTTCCTTCTGTGGACAAAG+AGG + chr4_1:3404095-3404114 None:intergenic 40.0%
!! ATCTCCTGGTTTTTATGGAG+TGG - chr4_1:3404220-3404239 Msa0529670:intron 40.0%
AGCAGATATGTTTGTAGGGA+GGG - chr4_1:3404644-3404663 Msa0529670:intron 40.0%
!!! GAGCTTTTGGGATGATATTG+AGG - chr4_1:3404734-3404753 Msa0529670:intron 40.0%
! ATTTGGGACGCATCTTTGTA+AGG - chr4_1:3404914-3404933 Msa0529670:intron 40.0%
!! CATCTTTGTAAGGCTAGTCT+TGG - chr4_1:3404924-3404943 Msa0529670:intron 40.0%
TGGTTGTTAGGAACTTGGAT+AGG + chr4_1:3404974-3404993 None:intergenic 40.0%
!! GAAGTTTCTGAAATGGGTGT+TGG + chr4_1:3405711-3405730 None:intergenic 40.0%
AGCAATACATGCGGTTATGT+TGG + chr4_1:3405872-3405891 None:intergenic 40.0%
! ATGTCAGCATTTTCTGCAAC+AGG - chr4_1:3406124-3406143 Msa0529670:intron 40.0%
! TGTCAGCATTTTCTGCAACA+GGG - chr4_1:3406125-3406144 Msa0529670:intron 40.0%
! ATGATGTTTTTCTCACCCCT+TGG - chr4_1:3406559-3406578 Msa0529670:five_prime_UTR 40.0%
!! AAAAATGAAAGGGGTGCCAA+GGG + chr4_1:3406578-3406597 None:intergenic 40.0%
AAACGCAAGCCAAATTTGAC+GGG + chr4_1:3406661-3406680 None:intergenic 40.0%
CAAACGCAAGCCAAATTTGA+CGG + chr4_1:3406662-3406681 None:intergenic 40.0%
! CCTTCGTGATCTTGTTATGG+CGG - chr4_1:3397421-3397440 Msa0529670:three_prime_UTR 45.0%
ATCTTCACGGTCAAGAGCTA+CGG - chr4_1:3397463-3397482 Msa0529670:three_prime_UTR 45.0%
GCGGCGAGTGTTAAAGAAAA+TGG - chr4_1:3397485-3397504 Msa0529670:three_prime_UTR 45.0%
TTAGAAACAACGGGGCTGTT+TGG - chr4_1:3398017-3398036 Msa0529670:intron 45.0%
CCGCCTTCGATAGAAAATGT+TGG + chr4_1:3398375-3398394 None:intergenic 45.0%
TGTTGGGGTTATGTTGGTGT+GGG + chr4_1:3398427-3398446 None:intergenic 45.0%
GAAGGTAATCACGTGTGTTG+GGG + chr4_1:3398442-3398461 None:intergenic 45.0%
CAAGATACAGGCAGGTTTGA+GGG + chr4_1:3398693-3398712 None:intergenic 45.0%
ACAAGATACAGGCAGGTTTG+AGG + chr4_1:3398694-3398713 None:intergenic 45.0%
TCGCAATTGCAGTTGTTGAC+TGG - chr4_1:3398716-3398735 Msa0529670:intron 45.0%
CAAGAAATCTTCTCCCTGCA+TGG + chr4_1:3399134-3399153 None:intergenic 45.0%
!! CAAAGCATCACCTTGCTGTT+CGG - chr4_1:3399503-3399522 Msa0529670:intron 45.0%
TATCATCGGCATAGTGCACT+AGG + chr4_1:3399554-3399573 None:intergenic 45.0%
ACAGATGGGTGAGATAGAAG+AGG - chr4_1:3399713-3399732 Msa0529670:intron 45.0%
!! TTCAGGTACTGGTTGTCTGA+CGG - chr4_1:3399745-3399764 Msa0529670:intron 45.0%
TCCCCTATTGTCCCACAATT+GGG - chr4_1:3400311-3400330 Msa0529670:intron 45.0%
ACCCAATTGTGGGACAATAG+GGG + chr4_1:3400315-3400334 None:intergenic 45.0%
CACCCAATTGTGGGACAATA+GGG + chr4_1:3400316-3400335 None:intergenic 45.0%
ACACCCAATTGTGGGACAAT+AGG + chr4_1:3400317-3400336 None:intergenic 45.0%
CACTACTACATATGTGCGCA+TGG + chr4_1:3400530-3400549 None:intergenic 45.0%
!! AAAAGCTTGAAGGGCACCAA+TGG + chr4_1:3400798-3400817 None:intergenic 45.0%
! GAGGAAGTACAATCCAGAAC+TGG + chr4_1:3400952-3400971 None:intergenic 45.0%
!! GTATTTTGAGGGTGCAGAAG+AGG - chr4_1:3400981-3401000 Msa0529670:five_prime_UTR 45.0%
!! ATTTTGAGGGTGCAGAAGAG+GGG - chr4_1:3400983-3401002 Msa0529670:five_prime_UTR 45.0%
CCCTGTATGTGGTGTAAATC+TGG - chr4_1:3401201-3401220 Msa0529670:intron 45.0%
CCCAGATTTACACCACATAC+AGG + chr4_1:3401205-3401224 None:intergenic 45.0%
GTAAATCTGGGTATGGCAGT+TGG - chr4_1:3401214-3401233 Msa0529670:intron 45.0%
AGGTTGCTTGAGTGGATAGT+AGG + chr4_1:3401466-3401485 None:intergenic 45.0%
ATCGGCCAAACCATGTATCA+AGG + chr4_1:3401486-3401505 None:intergenic 45.0%
! TTGATACATGGTTTGGCCGA+TGG - chr4_1:3401485-3401504 Msa0529670:intron 45.0%
TGGATGTTCTCTTGGCTGAA+AGG - chr4_1:3401630-3401649 Msa0529670:five_prime_UTR 45.0%
AAGGCGAGTAGAAGAAGCTT+TGG - chr4_1:3401649-3401668 Msa0529670:five_prime_UTR 45.0%
ACGTTCTCCTTCATCAAGAG+CGG + chr4_1:3401675-3401694 None:intergenic 45.0%
ATGCACGAAGTTCAGATCCA+CGG + chr4_1:3401826-3401845 None:intergenic 45.0%
GCCCTTAAAAAACTTGGGGA+TGG - chr4_1:3401854-3401873 Msa0529670:five_prime_UTR 45.0%
! CCTCCATATGAGGTGTTTGA+CGG + chr4_1:3401950-3401969 None:intergenic 45.0%
ACAAGCTGCAAGTGACTCAT+TGG - chr4_1:3402015-3402034 Msa0529670:five_prime_UTR 45.0%
! TCTGGTGAAAAGGCATGCAT+TGG - chr4_1:3402114-3402133 Msa0529670:five_prime_UTR 45.0%
!! ACAAGAGAGTACTGCTGCTA+TGG - chr4_1:3402303-3402322 Msa0529670:five_prime_UTR 45.0%
TATGGCTGCTGCTGATGATT+GGG - chr4_1:3402321-3402340 Msa0529670:five_prime_UTR 45.0%
TGCCCATCGCTTCAATTTGA+TGG - chr4_1:3402417-3402436 Msa0529670:five_prime_UTR 45.0%
! CAGGACTTCTTTGAGGATGT+AGG - chr4_1:3402955-3402974 Msa0529670:intron 45.0%
ACCTCTGCTTAGTATGCAGT+TGG - chr4_1:3402978-3402997 Msa0529670:intron 45.0%
CCTCTGCTTAGTATGCAGTT+GGG - chr4_1:3402979-3402998 Msa0529670:intron 45.0%
AATCTGCTGGGCTTCAGTTT+CGG + chr4_1:3403132-3403151 None:intergenic 45.0%
GCTAGCTAATGCCTCATTAC+TGG - chr4_1:3403157-3403176 Msa0529670:intron 45.0%
CCTTACAGGGATCTTGGTTT+AGG + chr4_1:3403223-3403242 None:intergenic 45.0%
CCTAAACCAAGATCCCTGTA+AGG - chr4_1:3403220-3403239 Msa0529670:intron 45.0%
ACCGTAGAAGAACCACAGAA+AGG - chr4_1:3403249-3403268 Msa0529670:intron 45.0%
GCCTTTCTGTGGTTCTTCTA+CGG + chr4_1:3403253-3403272 None:intergenic 45.0%
GGCAGAAAGGAAAAGTAGAG+AGG + chr4_1:3403628-3403647 None:intergenic 45.0%
GAAGAAAAGAGCAGGCAGAA+AGG + chr4_1:3403641-3403660 None:intergenic 45.0%
! GCCTGCTCTTTTCTTCTTGT+TGG - chr4_1:3403645-3403664 Msa0529670:intron 45.0%
CCCAACAAGAAGAAAAGAGC+AGG + chr4_1:3403649-3403668 None:intergenic 45.0%
CTTGTTGGGAACTTCTCTGT+TGG - chr4_1:3403660-3403679 Msa0529670:intron 45.0%
TGTTGGGAACTTCTCTGTTG+GGG - chr4_1:3403662-3403681 Msa0529670:intron 45.0%
TGTTGGGGATATGTGTAACG+AGG - chr4_1:3403677-3403696 Msa0529670:intron 45.0%
!! GAAACTCTTACGGCATTGAC+TGG - chr4_1:3403937-3403956 Msa0529670:intron 45.0%
TGTTCCTCTTTGTCCACAGA+AGG - chr4_1:3404088-3404107 Msa0529670:intron 45.0%
AGTTGTCTACCTAGGGACAT+GGG + chr4_1:3404290-3404309 None:intergenic 45.0%
AAGTTGTCTACCTAGGGACA+TGG + chr4_1:3404291-3404310 None:intergenic 45.0%
CAGCAGATATGTTTGTAGGG+AGG - chr4_1:3404643-3404662 Msa0529670:intron 45.0%
ATGATATTGAGGAAGGGCCA+AGG - chr4_1:3404745-3404764 Msa0529670:intron 45.0%
TGTAGACCAAGAGGACCTAA+AGG + chr4_1:3404771-3404790 None:intergenic 45.0%
CATACCTGTTGTAGACCAAG+AGG + chr4_1:3404780-3404799 None:intergenic 45.0%
AACTTGGATAGGTCAGTGCT+TGG + chr4_1:3404963-3404982 None:intergenic 45.0%
TCCAAGTTCCTAACAACCAG+TGG - chr4_1:3404975-3404994 Msa0529670:intron 45.0%
! ACCACTGGTTGTTAGGAACT+TGG + chr4_1:3404979-3404998 None:intergenic 45.0%
! GTTGTGTGTTTTGCCTCCAA+CGG - chr4_1:3406046-3406065 Msa0529670:intron 45.0%
! AGCATTTTCTGCAACAGGGA+TGG - chr4_1:3406129-3406148 Msa0529670:intron 45.0%
TTCAGAGCCACAACTTCCAA+TGG + chr4_1:3406232-3406251 None:intergenic 45.0%
GTGATCTGCCTGAAGATGAA+TGG - chr4_1:3406297-3406316 Msa0529670:intron 45.0%
CTCTCCCCGTTTATTTCCTT+TGG + chr4_1:3406368-3406387 None:intergenic 45.0%
!! AAAATGAAAGGGGTGCCAAG+GGG + chr4_1:3406577-3406596 None:intergenic 45.0%
!! CAAAAATGAAAGGGGTGCCA+AGG + chr4_1:3406579-3406598 None:intergenic 45.0%
! CCTTCGTGATCTTGTTATGG+CGG - chr4_1:3397421-3397440 Msa0529670:three_prime_UTR 45.0%
ATCTTCACGGTCAAGAGCTA+CGG - chr4_1:3397463-3397482 Msa0529670:three_prime_UTR 45.0%
GCGGCGAGTGTTAAAGAAAA+TGG - chr4_1:3397485-3397504 Msa0529670:three_prime_UTR 45.0%
TTAGAAACAACGGGGCTGTT+TGG - chr4_1:3398017-3398036 Msa0529670:intron 45.0%
CCGCCTTCGATAGAAAATGT+TGG + chr4_1:3398375-3398394 None:intergenic 45.0%
TGTTGGGGTTATGTTGGTGT+GGG + chr4_1:3398427-3398446 None:intergenic 45.0%
GAAGGTAATCACGTGTGTTG+GGG + chr4_1:3398442-3398461 None:intergenic 45.0%
CAAGATACAGGCAGGTTTGA+GGG + chr4_1:3398693-3398712 None:intergenic 45.0%
ACAAGATACAGGCAGGTTTG+AGG + chr4_1:3398694-3398713 None:intergenic 45.0%
TCGCAATTGCAGTTGTTGAC+TGG - chr4_1:3398716-3398735 Msa0529670:intron 45.0%
CAAGAAATCTTCTCCCTGCA+TGG + chr4_1:3399134-3399153 None:intergenic 45.0%
!! CAAAGCATCACCTTGCTGTT+CGG - chr4_1:3399503-3399522 Msa0529670:intron 45.0%
TATCATCGGCATAGTGCACT+AGG + chr4_1:3399554-3399573 None:intergenic 45.0%
ACAGATGGGTGAGATAGAAG+AGG - chr4_1:3399713-3399732 Msa0529670:intron 45.0%
!! TTCAGGTACTGGTTGTCTGA+CGG - chr4_1:3399745-3399764 Msa0529670:intron 45.0%
TCCCCTATTGTCCCACAATT+GGG - chr4_1:3400311-3400330 Msa0529670:intron 45.0%
ACCCAATTGTGGGACAATAG+GGG + chr4_1:3400315-3400334 None:intergenic 45.0%
CACCCAATTGTGGGACAATA+GGG + chr4_1:3400316-3400335 None:intergenic 45.0%
ACACCCAATTGTGGGACAAT+AGG + chr4_1:3400317-3400336 None:intergenic 45.0%
CACTACTACATATGTGCGCA+TGG + chr4_1:3400530-3400549 None:intergenic 45.0%
!! AAAAGCTTGAAGGGCACCAA+TGG + chr4_1:3400798-3400817 None:intergenic 45.0%
! GAGGAAGTACAATCCAGAAC+TGG + chr4_1:3400952-3400971 None:intergenic 45.0%
!! GTATTTTGAGGGTGCAGAAG+AGG - chr4_1:3400981-3401000 Msa0529670:five_prime_UTR 45.0%
!! ATTTTGAGGGTGCAGAAGAG+GGG - chr4_1:3400983-3401002 Msa0529670:five_prime_UTR 45.0%
CCCTGTATGTGGTGTAAATC+TGG - chr4_1:3401201-3401220 Msa0529670:intron 45.0%
CCCAGATTTACACCACATAC+AGG + chr4_1:3401205-3401224 None:intergenic 45.0%
GTAAATCTGGGTATGGCAGT+TGG - chr4_1:3401214-3401233 Msa0529670:intron 45.0%
AGGTTGCTTGAGTGGATAGT+AGG + chr4_1:3401466-3401485 None:intergenic 45.0%
ATCGGCCAAACCATGTATCA+AGG + chr4_1:3401486-3401505 None:intergenic 45.0%
! TTGATACATGGTTTGGCCGA+TGG - chr4_1:3401485-3401504 Msa0529670:intron 45.0%
TGGATGTTCTCTTGGCTGAA+AGG - chr4_1:3401630-3401649 Msa0529670:five_prime_UTR 45.0%
AAGGCGAGTAGAAGAAGCTT+TGG - chr4_1:3401649-3401668 Msa0529670:five_prime_UTR 45.0%
ACGTTCTCCTTCATCAAGAG+CGG + chr4_1:3401675-3401694 None:intergenic 45.0%
ATGCACGAAGTTCAGATCCA+CGG + chr4_1:3401826-3401845 None:intergenic 45.0%
GCCCTTAAAAAACTTGGGGA+TGG - chr4_1:3401854-3401873 Msa0529670:five_prime_UTR 45.0%
! CCTCCATATGAGGTGTTTGA+CGG + chr4_1:3401950-3401969 None:intergenic 45.0%
ACAAGCTGCAAGTGACTCAT+TGG - chr4_1:3402015-3402034 Msa0529670:five_prime_UTR 45.0%
! TCTGGTGAAAAGGCATGCAT+TGG - chr4_1:3402114-3402133 Msa0529670:five_prime_UTR 45.0%
!! ACAAGAGAGTACTGCTGCTA+TGG - chr4_1:3402303-3402322 Msa0529670:five_prime_UTR 45.0%
TATGGCTGCTGCTGATGATT+GGG - chr4_1:3402321-3402340 Msa0529670:five_prime_UTR 45.0%
TGCCCATCGCTTCAATTTGA+TGG - chr4_1:3402417-3402436 Msa0529670:five_prime_UTR 45.0%
! CAGGACTTCTTTGAGGATGT+AGG - chr4_1:3402955-3402974 Msa0529670:intron 45.0%
ACCTCTGCTTAGTATGCAGT+TGG - chr4_1:3402978-3402997 Msa0529670:intron 45.0%
CCTCTGCTTAGTATGCAGTT+GGG - chr4_1:3402979-3402998 Msa0529670:intron 45.0%
AATCTGCTGGGCTTCAGTTT+CGG + chr4_1:3403132-3403151 None:intergenic 45.0%
GCTAGCTAATGCCTCATTAC+TGG - chr4_1:3403157-3403176 Msa0529670:intron 45.0%
CCTTACAGGGATCTTGGTTT+AGG + chr4_1:3403223-3403242 None:intergenic 45.0%
CCTAAACCAAGATCCCTGTA+AGG - chr4_1:3403220-3403239 Msa0529670:intron 45.0%
ACCGTAGAAGAACCACAGAA+AGG - chr4_1:3403249-3403268 Msa0529670:intron 45.0%
GCCTTTCTGTGGTTCTTCTA+CGG + chr4_1:3403253-3403272 None:intergenic 45.0%
GGCAGAAAGGAAAAGTAGAG+AGG + chr4_1:3403628-3403647 None:intergenic 45.0%
GAAGAAAAGAGCAGGCAGAA+AGG + chr4_1:3403641-3403660 None:intergenic 45.0%
! GCCTGCTCTTTTCTTCTTGT+TGG - chr4_1:3403645-3403664 Msa0529670:intron 45.0%
CCCAACAAGAAGAAAAGAGC+AGG + chr4_1:3403649-3403668 None:intergenic 45.0%
CTTGTTGGGAACTTCTCTGT+TGG - chr4_1:3403660-3403679 Msa0529670:intron 45.0%
TGTTGGGAACTTCTCTGTTG+GGG - chr4_1:3403662-3403681 Msa0529670:intron 45.0%
TGTTGGGGATATGTGTAACG+AGG - chr4_1:3403677-3403696 Msa0529670:intron 45.0%
!! GAAACTCTTACGGCATTGAC+TGG - chr4_1:3403937-3403956 Msa0529670:intron 45.0%
TGTTCCTCTTTGTCCACAGA+AGG - chr4_1:3404088-3404107 Msa0529670:intron 45.0%
AGTTGTCTACCTAGGGACAT+GGG + chr4_1:3404290-3404309 None:intergenic 45.0%
AAGTTGTCTACCTAGGGACA+TGG + chr4_1:3404291-3404310 None:intergenic 45.0%
CAGCAGATATGTTTGTAGGG+AGG - chr4_1:3404643-3404662 Msa0529670:intron 45.0%
ATGATATTGAGGAAGGGCCA+AGG - chr4_1:3404745-3404764 Msa0529670:intron 45.0%
TGTAGACCAAGAGGACCTAA+AGG + chr4_1:3404771-3404790 None:intergenic 45.0%
CATACCTGTTGTAGACCAAG+AGG + chr4_1:3404780-3404799 None:intergenic 45.0%
AACTTGGATAGGTCAGTGCT+TGG + chr4_1:3404963-3404982 None:intergenic 45.0%
TCCAAGTTCCTAACAACCAG+TGG - chr4_1:3404975-3404994 Msa0529670:intron 45.0%
! ACCACTGGTTGTTAGGAACT+TGG + chr4_1:3404979-3404998 None:intergenic 45.0%
! GTTGTGTGTTTTGCCTCCAA+CGG - chr4_1:3406046-3406065 Msa0529670:intron 45.0%
! AGCATTTTCTGCAACAGGGA+TGG - chr4_1:3406129-3406148 Msa0529670:intron 45.0%
TTCAGAGCCACAACTTCCAA+TGG + chr4_1:3406232-3406251 None:intergenic 45.0%
GTGATCTGCCTGAAGATGAA+TGG - chr4_1:3406297-3406316 Msa0529670:intron 45.0%
CTCTCCCCGTTTATTTCCTT+TGG + chr4_1:3406368-3406387 None:intergenic 45.0%
!! AAAATGAAAGGGGTGCCAAG+GGG + chr4_1:3406577-3406596 None:intergenic 45.0%
!! CAAAAATGAAAGGGGTGCCA+AGG + chr4_1:3406579-3406598 None:intergenic 45.0%
!! TAAATATTATAACAAATATA+AGG + chr4_1:3405757-3405776 None:intergenic 5.0%
!! TAAATATTATAACAAATATA+AGG + chr4_1:3405757-3405776 None:intergenic 5.0%
!! TAAATATTATAACAAATATA+AGG + chr4_1:3405757-3405776 None:intergenic 5.0%
!! TAAATATTATAACAAATATA+AGG + chr4_1:3405757-3405776 None:intergenic 5.0%
CCGCCATAACAAGATCACGA+AGG + chr4_1:3397424-3397443 None:intergenic 50.0%
! TCGTGATCTTGTTATGGCGG+CGG - chr4_1:3397424-3397443 Msa0529670:three_prime_UTR 50.0%
ACACTGATACGTGTCGGACA+CGG + chr4_1:3398404-3398423 None:intergenic 50.0%
TGTGGGACACTGATACGTGT+CGG + chr4_1:3398410-3398429 None:intergenic 50.0%
GTGTTGGGGTTATGTTGGTG+TGG + chr4_1:3398428-3398447 None:intergenic 50.0%
CACGTGTGTTGGGGTTATGT+TGG + chr4_1:3398433-3398452 None:intergenic 50.0%
TGCGACAACAAGATACAGGC+AGG + chr4_1:3398701-3398720 None:intergenic 50.0%
CTTGAAAAGAGCTTCTGCCG+AGG - chr4_1:3399262-3399281 Msa0529670:CDS 50.0%
CCAAGACTCACCCAACTAGT+GGG - chr4_1:3399526-3399545 Msa0529670:intron 50.0%
GGTGAGATAGAAGAGGCAGT+GGG - chr4_1:3399720-3399739 Msa0529670:intron 50.0%
GTGAGATAGAAGAGGCAGTG+GGG - chr4_1:3399721-3399740 Msa0529670:intron 50.0%
CAATTGTGGGACAATAGGGG+AGG + chr4_1:3400312-3400331 None:intergenic 50.0%
CTCCCCTATTGTCCCACAAT+TGG - chr4_1:3400310-3400329 Msa0529670:intron 50.0%
TACAATCCAGAACTGGGCTG+TGG + chr4_1:3400945-3400964 None:intergenic 50.0%
!! TTTTGAGGGTGCAGAAGAGG+GGG - chr4_1:3400984-3401003 Msa0529670:five_prime_UTR 50.0%
AGTTCAGATCCACGGGTAGA+AGG + chr4_1:3401818-3401837 None:intergenic 50.0%
TGCACGAAGTTCAGATCCAC+GGG + chr4_1:3401825-3401844 None:intergenic 50.0%
AGTAGCAAGCTGTGAGCATG+CGG + chr4_1:3401881-3401900 None:intergenic 50.0%
! CATATGAGGTGTTTGACGGC+CGG + chr4_1:3401946-3401965 None:intergenic 50.0%
CCGTCAAACACCTCATATGG+AGG - chr4_1:3401947-3401966 Msa0529670:five_prime_UTR 50.0%
! TACTGCAGCTCTAGCACAAC+TGG - chr4_1:3401976-3401995 Msa0529670:five_prime_UTR 50.0%
AGGAGGTTTAAGAGCTGCTG+CGG - chr4_1:3402153-3402172 Msa0529670:five_prime_UTR 50.0%
CTATGGCTGCTGCTGATGAT+TGG - chr4_1:3402320-3402339 Msa0529670:five_prime_UTR 50.0%
! GTCTGCCGATTAGCATTAGG+AGG + chr4_1:3402358-3402377 None:intergenic 50.0%
CCTAATGCTAATCGGCAGAC+CGG - chr4_1:3402358-3402377 Msa0529670:five_prime_UTR 50.0%
CCCAACTGCATACTAAGCAG+AGG + chr4_1:3402982-3403001 None:intergenic 50.0%
CTGCTTAGTATGCAGTTGGG+AGG - chr4_1:3402982-3403001 Msa0529670:intron 50.0%
AGCTAGCAGTGCAATCTGCT+GGG + chr4_1:3403144-3403163 None:intergenic 50.0%
TAGCTAGCAGTGCAATCTGC+TGG + chr4_1:3403145-3403164 None:intergenic 50.0%
GTTTAGGGAGGAGAGCTTCA+TGG + chr4_1:3403207-3403226 None:intergenic 50.0%
ACAGGGATCTTGGTTTAGGG+AGG + chr4_1:3403219-3403238 None:intergenic 50.0%
GTCATCCTGAACAACGGGAA+TGG - chr4_1:3403279-3403298 Msa0529670:intron 50.0%
ATCCTGAACAACGGGAATGG+AGG - chr4_1:3403282-3403301 Msa0529670:intron 50.0%
!! CATCTTAGTGGGTTCAGGCT+TGG - chr4_1:3404316-3404335 Msa0529670:intron 50.0%
AGGTCCTCTTGGTCTACAAC+AGG - chr4_1:3404773-3404792 Msa0529670:intron 50.0%
AAGGACGGCCAGAATCCAAA+AGG + chr4_1:3405639-3405658 None:intergenic 50.0%
! TGTGTTTTGCCTCCAACGGT+CGG - chr4_1:3406050-3406069 Msa0529670:intron 50.0%
TGACAAATACCGACCGTTGG+AGG + chr4_1:3406062-3406081 None:intergenic 50.0%
CCTTGACAAATACCGACCGT+TGG + chr4_1:3406065-3406084 None:intergenic 50.0%
CCAACGGTCGGTATTTGTCA+AGG - chr4_1:3406062-3406081 Msa0529670:intron 50.0%
CAACAGGGATGGATCCGTAT+AGG - chr4_1:3406140-3406159 Msa0529670:intron 50.0%
GTGCAGAGACAGATGCAGTA+GGG + chr4_1:3406403-3406422 None:intergenic 50.0%
TGTGCAGAGACAGATGCAGT+AGG + chr4_1:3406404-3406423 None:intergenic 50.0%
CCGCCATAACAAGATCACGA+AGG + chr4_1:3397424-3397443 None:intergenic 50.0%
! TCGTGATCTTGTTATGGCGG+CGG - chr4_1:3397424-3397443 Msa0529670:three_prime_UTR 50.0%
ACACTGATACGTGTCGGACA+CGG + chr4_1:3398404-3398423 None:intergenic 50.0%
TGTGGGACACTGATACGTGT+CGG + chr4_1:3398410-3398429 None:intergenic 50.0%
GTGTTGGGGTTATGTTGGTG+TGG + chr4_1:3398428-3398447 None:intergenic 50.0%
CACGTGTGTTGGGGTTATGT+TGG + chr4_1:3398433-3398452 None:intergenic 50.0%
TGCGACAACAAGATACAGGC+AGG + chr4_1:3398701-3398720 None:intergenic 50.0%
CTTGAAAAGAGCTTCTGCCG+AGG - chr4_1:3399262-3399281 Msa0529670:CDS 50.0%
CCAAGACTCACCCAACTAGT+GGG - chr4_1:3399526-3399545 Msa0529670:intron 50.0%
GGTGAGATAGAAGAGGCAGT+GGG - chr4_1:3399720-3399739 Msa0529670:intron 50.0%
GTGAGATAGAAGAGGCAGTG+GGG - chr4_1:3399721-3399740 Msa0529670:intron 50.0%
CAATTGTGGGACAATAGGGG+AGG + chr4_1:3400312-3400331 None:intergenic 50.0%
CTCCCCTATTGTCCCACAAT+TGG - chr4_1:3400310-3400329 Msa0529670:intron 50.0%
TACAATCCAGAACTGGGCTG+TGG + chr4_1:3400945-3400964 None:intergenic 50.0%
!! TTTTGAGGGTGCAGAAGAGG+GGG - chr4_1:3400984-3401003 Msa0529670:five_prime_UTR 50.0%
AGTTCAGATCCACGGGTAGA+AGG + chr4_1:3401818-3401837 None:intergenic 50.0%
TGCACGAAGTTCAGATCCAC+GGG + chr4_1:3401825-3401844 None:intergenic 50.0%
AGTAGCAAGCTGTGAGCATG+CGG + chr4_1:3401881-3401900 None:intergenic 50.0%
! CATATGAGGTGTTTGACGGC+CGG + chr4_1:3401946-3401965 None:intergenic 50.0%
CCGTCAAACACCTCATATGG+AGG - chr4_1:3401947-3401966 Msa0529670:five_prime_UTR 50.0%
! TACTGCAGCTCTAGCACAAC+TGG - chr4_1:3401976-3401995 Msa0529670:five_prime_UTR 50.0%
AGGAGGTTTAAGAGCTGCTG+CGG - chr4_1:3402153-3402172 Msa0529670:five_prime_UTR 50.0%
CTATGGCTGCTGCTGATGAT+TGG - chr4_1:3402320-3402339 Msa0529670:five_prime_UTR 50.0%
! GTCTGCCGATTAGCATTAGG+AGG + chr4_1:3402358-3402377 None:intergenic 50.0%
CCTAATGCTAATCGGCAGAC+CGG - chr4_1:3402358-3402377 Msa0529670:five_prime_UTR 50.0%
CCCAACTGCATACTAAGCAG+AGG + chr4_1:3402982-3403001 None:intergenic 50.0%
CTGCTTAGTATGCAGTTGGG+AGG - chr4_1:3402982-3403001 Msa0529670:intron 50.0%
AGCTAGCAGTGCAATCTGCT+GGG + chr4_1:3403144-3403163 None:intergenic 50.0%
TAGCTAGCAGTGCAATCTGC+TGG + chr4_1:3403145-3403164 None:intergenic 50.0%
GTTTAGGGAGGAGAGCTTCA+TGG + chr4_1:3403207-3403226 None:intergenic 50.0%
ACAGGGATCTTGGTTTAGGG+AGG + chr4_1:3403219-3403238 None:intergenic 50.0%
GTCATCCTGAACAACGGGAA+TGG - chr4_1:3403279-3403298 Msa0529670:intron 50.0%
ATCCTGAACAACGGGAATGG+AGG - chr4_1:3403282-3403301 Msa0529670:intron 50.0%
!! CATCTTAGTGGGTTCAGGCT+TGG - chr4_1:3404316-3404335 Msa0529670:intron 50.0%
AGGTCCTCTTGGTCTACAAC+AGG - chr4_1:3404773-3404792 Msa0529670:intron 50.0%
AAGGACGGCCAGAATCCAAA+AGG + chr4_1:3405639-3405658 None:intergenic 50.0%
! TGTGTTTTGCCTCCAACGGT+CGG - chr4_1:3406050-3406069 Msa0529670:intron 50.0%
TGACAAATACCGACCGTTGG+AGG + chr4_1:3406062-3406081 None:intergenic 50.0%
CCTTGACAAATACCGACCGT+TGG + chr4_1:3406065-3406084 None:intergenic 50.0%
CCAACGGTCGGTATTTGTCA+AGG - chr4_1:3406062-3406081 Msa0529670:intron 50.0%
CAACAGGGATGGATCCGTAT+AGG - chr4_1:3406140-3406159 Msa0529670:intron 50.0%
GTGCAGAGACAGATGCAGTA+GGG + chr4_1:3406403-3406422 None:intergenic 50.0%
TGTGCAGAGACAGATGCAGT+AGG + chr4_1:3406404-3406423 None:intergenic 50.0%
AGTCACGCGCACTGTGTGTT+TGG + chr4_1:3397279-3397298 None:intergenic 55.0%
TTCACGGTCAAGAGCTACGG+CGG - chr4_1:3397466-3397485 Msa0529670:three_prime_UTR 55.0%
CACTGATACGTGTCGGACAC+GGG + chr4_1:3398403-3398422 None:intergenic 55.0%
GACACTTCTGCGCATCTCCT+CGG + chr4_1:3399282-3399301 None:intergenic 55.0%
TGAGTCTTGGCCGAACAGCA+AGG + chr4_1:3399516-3399535 None:intergenic 55.0%
GCCAAGACTCACCCAACTAG+TGG - chr4_1:3399525-3399544 Msa0529670:intron 55.0%
CCCACTAGTTGGGTGAGTCT+TGG + chr4_1:3399529-3399548 None:intergenic 55.0%
GCACTAGGCTCCCACTAGTT+GGG + chr4_1:3399539-3399558 None:intergenic 55.0%
TGCACTAGGCTCCCACTAGT+TGG + chr4_1:3399540-3399559 None:intergenic 55.0%
GGGTGAGATAGAAGAGGCAG+TGG - chr4_1:3399719-3399738 Msa0529670:intron 55.0%
AGAAGAGGCAGTGGGGTTTC+AGG - chr4_1:3399728-3399747 Msa0529670:intron 55.0%
GCTTTGGCCGCTCTTGATGA+AGG - chr4_1:3401665-3401684 Msa0529670:five_prime_UTR 55.0%
CGGCCGTCAAACACCTCATA+TGG - chr4_1:3401944-3401963 Msa0529670:five_prime_UTR 55.0%
TTGGCTTCATCAGCAGCTGC+AGG - chr4_1:3402133-3402152 Msa0529670:five_prime_UTR 55.0%
! CCGGTCTGCCGATTAGCATT+AGG + chr4_1:3402361-3402380 None:intergenic 55.0%
!! TTGGGAGGACAAGCTCTGGA+AGG - chr4_1:3402997-3403016 Msa0529670:intron 55.0%
!! TGGGAGGACAAGCTCTGGAA+GGG - chr4_1:3402998-3403017 Msa0529670:intron 55.0%
CTCCTCCATTCCCGTTGTTC+AGG + chr4_1:3403287-3403306 None:intergenic 55.0%
GAATGGAGGAGACGACTCGT+GGG - chr4_1:3403296-3403315 Msa0529670:intron 55.0%
GACTCGTGGGTTCAGTTGAC+AGG - chr4_1:3403309-3403328 Msa0529670:intron 55.0%
CGGGGTGCATATCTATCTCC+TGG - chr4_1:3404206-3404225 Msa0529670:intron 55.0%
TGTCTACCTAGGGACATGGG+AGG + chr4_1:3404287-3404306 None:intergenic 55.0%
CCAAGAGGACCTAAAGGCCT+TGG + chr4_1:3404765-3404784 None:intergenic 55.0%
CCAAGGCCTTTAGGTCCTCT+TGG - chr4_1:3404762-3404781 Msa0529670:intron 55.0%
AGTCACGCGCACTGTGTGTT+TGG + chr4_1:3397279-3397298 None:intergenic 55.0%
TTCACGGTCAAGAGCTACGG+CGG - chr4_1:3397466-3397485 Msa0529670:three_prime_UTR 55.0%
CACTGATACGTGTCGGACAC+GGG + chr4_1:3398403-3398422 None:intergenic 55.0%
GACACTTCTGCGCATCTCCT+CGG + chr4_1:3399282-3399301 None:intergenic 55.0%
TGAGTCTTGGCCGAACAGCA+AGG + chr4_1:3399516-3399535 None:intergenic 55.0%
GCCAAGACTCACCCAACTAG+TGG - chr4_1:3399525-3399544 Msa0529670:intron 55.0%
CCCACTAGTTGGGTGAGTCT+TGG + chr4_1:3399529-3399548 None:intergenic 55.0%
GCACTAGGCTCCCACTAGTT+GGG + chr4_1:3399539-3399558 None:intergenic 55.0%
TGCACTAGGCTCCCACTAGT+TGG + chr4_1:3399540-3399559 None:intergenic 55.0%
GGGTGAGATAGAAGAGGCAG+TGG - chr4_1:3399719-3399738 Msa0529670:intron 55.0%
AGAAGAGGCAGTGGGGTTTC+AGG - chr4_1:3399728-3399747 Msa0529670:intron 55.0%
GCTTTGGCCGCTCTTGATGA+AGG - chr4_1:3401665-3401684 Msa0529670:five_prime_UTR 55.0%
CGGCCGTCAAACACCTCATA+TGG - chr4_1:3401944-3401963 Msa0529670:five_prime_UTR 55.0%
TTGGCTTCATCAGCAGCTGC+AGG - chr4_1:3402133-3402152 Msa0529670:five_prime_UTR 55.0%
! CCGGTCTGCCGATTAGCATT+AGG + chr4_1:3402361-3402380 None:intergenic 55.0%
!! TTGGGAGGACAAGCTCTGGA+AGG - chr4_1:3402997-3403016 Msa0529670:intron 55.0%
!! TGGGAGGACAAGCTCTGGAA+GGG - chr4_1:3402998-3403017 Msa0529670:intron 55.0%
CTCCTCCATTCCCGTTGTTC+AGG + chr4_1:3403287-3403306 None:intergenic 55.0%
GAATGGAGGAGACGACTCGT+GGG - chr4_1:3403296-3403315 Msa0529670:intron 55.0%
GACTCGTGGGTTCAGTTGAC+AGG - chr4_1:3403309-3403328 Msa0529670:intron 55.0%
CGGGGTGCATATCTATCTCC+TGG - chr4_1:3404206-3404225 Msa0529670:intron 55.0%
TGTCTACCTAGGGACATGGG+AGG + chr4_1:3404287-3404306 None:intergenic 55.0%
CCAAGAGGACCTAAAGGCCT+TGG + chr4_1:3404765-3404784 None:intergenic 55.0%
CCAAGGCCTTTAGGTCCTCT+TGG - chr4_1:3404762-3404781 Msa0529670:intron 55.0%
TAGATTGGCGCGTGTGTGCG+TGG - chr4_1:3397363-3397382 Msa0529670:three_prime_UTR 60.0%
! GGCAGTGGGGTTTCAGGTAC+TGG - chr4_1:3399734-3399753 Msa0529670:intron 60.0%
GCTTGTCAGCCTTCTACCCG+TGG - chr4_1:3401806-3401825 Msa0529670:five_prime_UTR 60.0%
GCTTCATCAGCAGCTGCAGG+AGG - chr4_1:3402136-3402155 Msa0529670:five_prime_UTR 60.0%
GCAGTTGGGAGGACAAGCTC+TGG - chr4_1:3402993-3403012 Msa0529670:intron 60.0%
GGAATGGAGGAGACGACTCG+TGG - chr4_1:3403295-3403314 Msa0529670:intron 60.0%
GAAGCTCCTCCCATGTCCCT+AGG - chr4_1:3404278-3404297 Msa0529670:intron 60.0%
GAGGAAGGGCCAAGGCCTTT+AGG - chr4_1:3404753-3404772 Msa0529670:intron 60.0%
TAGATTGGCGCGTGTGTGCG+TGG - chr4_1:3397363-3397382 Msa0529670:three_prime_UTR 60.0%
! GGCAGTGGGGTTTCAGGTAC+TGG - chr4_1:3399734-3399753 Msa0529670:intron 60.0%
GCTTGTCAGCCTTCTACCCG+TGG - chr4_1:3401806-3401825 Msa0529670:five_prime_UTR 60.0%
GCTTCATCAGCAGCTGCAGG+AGG - chr4_1:3402136-3402155 Msa0529670:five_prime_UTR 60.0%
GCAGTTGGGAGGACAAGCTC+TGG - chr4_1:3402993-3403012 Msa0529670:intron 60.0%
GGAATGGAGGAGACGACTCG+TGG - chr4_1:3403295-3403314 Msa0529670:intron 60.0%
GAAGCTCCTCCCATGTCCCT+AGG - chr4_1:3404278-3404297 Msa0529670:intron 60.0%
GAGGAAGGGCCAAGGCCTTT+AGG - chr4_1:3404753-3404772 Msa0529670:intron 60.0%
GCTCTGCCACAGCCCAGTTC+TGG - chr4_1:3400936-3400955 Msa0529670:five_prime_UTR 65.0%
GAGAGCTTCATGGCTGCGCG+TGG + chr4_1:3403197-3403216 None:intergenic 65.0%
GCTCTGCCACAGCCCAGTTC+TGG - chr4_1:3400936-3400955 Msa0529670:five_prime_UTR 65.0%
GAGAGCTTCATGGCTGCGCG+TGG + chr4_1:3403197-3403216 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 3397232 3406747 3397232 ID=Msa0529670;Name=Msa0529670
chr4_1 mRNA 3397232 3406747 3397232 ID=Msa0529670-mRNA-1;Parent=Msa0529670;Name=Msa0529670-mRNA-1;_AED=0.25;_eAED=0.25;_QI=1665|1|1|1|1|0.85|7|287|278
chr4_1 exon 3397232 3397681 3397232 ID=Msa0529670-mRNA-1:exon:1001;Parent=Msa0529670-mRNA-1
chr4_1 exon 3397818 3397954 3397818 ID=Msa0529670-mRNA-1:exon:1000;Parent=Msa0529670-mRNA-1
chr4_1 exon 3399185 3399373 3399185 ID=Msa0529670-mRNA-1:exon:999;Parent=Msa0529670-mRNA-1
chr4_1 exon 3400507 3401021 3400507 ID=Msa0529670-mRNA-1:exon:998;Parent=Msa0529670-mRNA-1
chr4_1 exon 3401535 3402567 3401535 ID=Msa0529670-mRNA-1:exon:997;Parent=Msa0529670-mRNA-1
chr4_1 exon 3404652 3404749 3404652 ID=Msa0529670-mRNA-1:exon:996;Parent=Msa0529670-mRNA-1
chr4_1 exon 3406381 3406747 3406381 ID=Msa0529670-mRNA-1:exon:995;Parent=Msa0529670-mRNA-1
chr4_1 five_prime_UTR 3406381 3406747 3406381 ID=Msa0529670-mRNA-1:five_prime_utr;Parent=Msa0529670-mRNA-1
chr4_1 five_prime_UTR 3404652 3404749 3404652 ID=Msa0529670-mRNA-1:five_prime_utr;Parent=Msa0529670-mRNA-1
chr4_1 five_prime_UTR 3401535 3402567 3401535 ID=Msa0529670-mRNA-1:five_prime_utr;Parent=Msa0529670-mRNA-1
chr4_1 five_prime_UTR 3400855 3401021 3400855 ID=Msa0529670-mRNA-1:five_prime_utr;Parent=Msa0529670-mRNA-1
chr4_1 CDS 3400507 3400854 3400507 ID=Msa0529670-mRNA-1:cds;Parent=Msa0529670-mRNA-1
chr4_1 CDS 3399185 3399373 3399185 ID=Msa0529670-mRNA-1:cds;Parent=Msa0529670-mRNA-1
chr4_1 CDS 3397818 3397954 3397818 ID=Msa0529670-mRNA-1:cds;Parent=Msa0529670-mRNA-1
chr4_1 CDS 3397519 3397681 3397519 ID=Msa0529670-mRNA-1:cds;Parent=Msa0529670-mRNA-1
chr4_1 three_prime_UTR 3397232 3397518 3397232 ID=Msa0529670-mRNA-1:three_prime_utr;Parent=Msa0529670-mRNA-1
Gene Sequence

>Msa0529670

ATGGCCGAAACTGAAGCCCAGCAGATTGCACTGCTAGCTAATGCCTCATTACTGGCTGATGAACTACTTCCACGCGCAGCCATGAAGCTCTCCTCCCTAAACCAAGATCCCTGTAAGGATGATAACCGTAGAAGAACCACAGAAAGGCAAAATCGTCATCCTGAACAACGGGAATGGAGGAGACGACTCGTGGGTTCAGTTGACAGGTTGAAAGATTCATTCTGTCGCCAACATGCTTTGAGCCTGATTTTTACAGAGGATGGTGATAGTCATCTTACAGCTGACATGTATATAAGTATGGAAGGAAATGCGGATGAAGTTGAATGGATTCCGTCTTTGATTTTTCAGGAGCTTTTCATAAAACTGAACAGAATGGCCAATATAGCAGCAGATATGTTTGTAGGGAGGGAACGATTTGCTACGTTGCTCTTGATGAGACTTACAGAAACTGTTATTTTGTGGATTTCAGAAGATCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCTCTTGGTCTACAACAGTTTTATTTGGATATGAAGTTTGTTGTGTGTTTTGCCTCCAACGGTCGGTATTTGTCAAGGAATTTGCAAAGAATTGTGAATGAAATTATCAGGAAGGCAATGTCAGCATTTTCTGCAACAGGGATGGATCCGTATAGTGATCTGCCTGAAGATGAATGGTTTAATGAAATATGTCAAGATGCTATGGAAAGATTAAGTGGAAAACCAAAGGAAATAAACGGGGAGAGAGAACTTAGTAGCCCTACTGCATCTGTCTCTGCACAATCAATTTCATCTGTCAGATCTCATAATAGTTCGTAA
Protein sequence

>Msa0529670

MAETEAQQIALLANASLLADELLPRAAMKLSSLNQDPCKDDNRRRTTERQNRHPEQREWRRRLVGSVDRLKDSFCRQHALSLIFTEDGDSHLTADMYISMEGNADEVEWIPSLIFQELFIKLNRMANIAADMFVGRERFATLLLMRLTETVILWISEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSAFSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSHNSS*