AlfalfaGEDB | Msa0291120

M. sativa cultivar zhongmu-4 / Msa0291120

KEGG: K00430
GO: GO:0000902 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009826 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016684 GO:0030312 GO:0031090 GO:0031347 GO:0031349 GO:0032502 GO:0032989 GO:0035821 GO:0040007 GO:0040008 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0045926 GO:0048046 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0055114 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0071944 GO:0072593 GO:0075136 GO:0080134 GO:0097237 GO:0098542 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1990748
PFAM: PF00141.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0291120	AAB41811.1	99.441	179	1	0	35	213	1	179	1.42e-124	366

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0291120	sp\|P15233\|PER1C_ARMRU	60.784	153	60	0	60	212	7	159	1.49e-61	197

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0291120	Q40366	99.441	179	1	0	35	213	1	179	6.77e-125	366

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0060670	Msa0291120	0.829159	6.017576e-55	-8.615850e-47
Msa0106620	Msa0291120	0.812612	3.883635e-51	-8.615850e-47
Msa0231190	Msa0291120	0.809083	2.254199e-50	-8.615850e-47
Msa0241830	Msa0291120	0.809092	2.245113e-50	-8.615850e-47
Msa0288620	Msa0291120	0.800812	1.209150e-48	-8.615850e-47
Msa0291120	Msa0322900	0.808740	2.669596e-50	-8.615850e-47
Msa0291120	Msa0430230	0.803180	3.942799e-49	-8.615850e-47
Msa0291120	Msa0519150	0.809592	1.753693e-50	-8.615850e-47
Msa0291120	Msa0529670	0.801153	1.030015e-48	-8.615850e-47
Msa0291120	Msa0586450	0.811390	7.170488e-51	-8.615850e-47
Msa0291120	Msa0626270	0.826989	2.004092e-54	-8.615850e-47
Msa0291120	Msa0626460	0.823479	1.354899e-53	-8.615850e-47
Msa0291120	Msa0664540	0.826238	3.027197e-54	-8.615850e-47
Msa0291120	Msa0687580	0.806344	8.607952e-50	-8.615850e-47
Msa0291120	Msa0735550	0.800513	1.391388e-48	-8.615850e-47
Msa0291120	Msa1031390	0.804098	2.542434e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0291120	MtrunA17_Chr2g0292261	96.023	176	7	0	38	213	3	178	1.48e-121	348
Msa0291120	MtrunA17_Chr2g0292181	80.000	175	35	0	38	212	12	186	3.61e-100	294
Msa0291120	MtrunA17_Chr2g0292241	77.976	168	37	0	45	212	10	177	3.69e-94	279
Msa0291120	MtrunA17_Chr2g0292291	74.719	178	45	0	35	212	1	178	4.04e-94	278
Msa0291120	MtrunA17_Chr2g0292211	75.595	168	41	0	45	212	21	188	1.53e-89	267
Msa0291120	MtrunA17_Chr2g0292111	72.000	175	49	0	38	212	3	177	9.70e-89	265
Msa0291120	MtrunA17_Chr2g0292271	75.723	173	40	2	41	212	6	177	1.44e-88	265
Msa0291120	MtrunA17_Chr2g0291751	71.429	175	50	0	38	212	3	177	7.11e-85	255
Msa0291120	MtrunA17_Chr2g0292151	68.571	175	55	0	38	212	3	177	4.65e-81	245
Msa0291120	MtrunA17_Chr2g0292251	74.359	156	40	0	57	212	21	176	9.29e-79	239
Msa0291120	MtrunA17_Chr2g0292091	60.795	176	64	1	37	212	2	172	3.63e-70	217
Msa0291120	MtrunA17_Chr2g0292101	63.095	168	57	1	45	212	11	173	9.28e-70	216
Msa0291120	MtrunA17_Chr7g0258811	48.058	206	97	4	6	210	20	216	5.92e-58	187
Msa0291120	MtrunA17_Chr7g0244461	52.121	165	71	1	46	210	10	166	4.25e-54	175
Msa0291120	MtrunA17_Chr2g0320071	51.462	171	83	0	42	212	3	173	5.41e-54	175
Msa0291120	MtrunA17_Chr8g0372601	57.353	136	58	0	68	203	34	169	8.81e-54	175
Msa0291120	MtrunA17_Chr1g0175561	56.329	158	68	1	56	212	16	173	2.60e-53	173
Msa0291120	MtrunA17_Chr2g0320101	52.071	169	81	0	42	210	3	171	5.73e-53	172
Msa0291120	MtrunA17_Chr1g0155611	56.429	140	61	0	64	203	46	185	6.26e-53	173
Msa0291120	MtrunA17_Chr2g0320091	49.708	171	86	0	42	212	3	173	9.55e-53	172
Msa0291120	MtrunA17_Chr5g0404721	55.882	136	60	0	68	203	34	169	1.31e-52	172
Msa0291120	MtrunA17_Chr3g0129051	50.000	172	82	1	41	212	9	176	5.44e-52	170
Msa0291120	MtrunA17_Chr3g0114451	55.629	151	67	0	63	213	25	175	7.08e-52	169
Msa0291120	MtrunA17_Chr4g0038151	50.943	159	76	1	43	201	6	162	8.52e-52	169
Msa0291120	MtrunA17_Chr2g0320061	50.292	171	85	0	42	212	3	173	2.99e-51	168
Msa0291120	MtrunA17_Chr4g0038171	52.288	153	73	0	61	213	21	173	5.48e-51	167
Msa0291120	MtrunA17_Chr2g0320051	51.479	169	82	0	42	210	3	171	8.97e-51	167
Msa0291120	MtrunA17_Chr4g0043391	52.667	150	71	0	61	210	24	173	9.19e-51	167
Msa0291120	MtrunA17_Chr3g0106921	50.296	169	79	2	45	212	10	174	1.07e-50	166
Msa0291120	MtrunA17_Chr7g0244451	55.034	149	67	0	62	210	22	170	5.85e-50	164
Msa0291120	MtrunA17_Chr5g0402571	55.634	142	62	1	62	203	25	165	9.33e-50	164
Msa0291120	MtrunA17_Chr4g0038161	48.045	179	83	2	35	213	5	173	1.34e-49	164
Msa0291120	MtrunA17_Chr1g0213061	46.154	169	90	1	42	210	5	172	1.85e-48	161
Msa0291120	MtrunA17_Chr4g0013201	51.923	156	73	2	56	210	38	192	2.78e-48	161
Msa0291120	MtrunA17_Chr4g0070951	54.054	148	66	1	56	203	20	165	4.51e-48	160
Msa0291120	MtrunA17_Chr5g0402581	53.521	142	65	1	62	203	25	165	1.83e-47	158
Msa0291120	MtrunA17_Chr7g0224371	48.366	153	78	1	59	210	25	177	2.33e-47	158
Msa0291120	MtrunA17_Chr4g0068621	47.273	165	86	1	39	203	14	177	2.92e-47	158
Msa0291120	MtrunA17_Chr2g0320031	50.667	150	74	0	61	210	23	172	8.32e-47	156
Msa0291120	MtrunA17_Chr3g0129041	49.419	172	83	1	41	212	9	176	2.53e-46	155
Msa0291120	MtrunA17_Chr5g0432441	48.125	160	83	0	46	205	12	171	3.31e-46	155
Msa0291120	MtrunA17_Chr4g0013721	48.684	152	78	0	59	210	95	246	3.58e-46	157
Msa0291120	MtrunA17_Chr4g0013171	49.398	166	82	2	50	213	13	178	4.32e-46	155
Msa0291120	MtrunA17_Chr3g0129061	49.419	172	83	1	41	212	9	176	5.66e-46	154
Msa0291120	MtrunA17_Chr4g0013821	47.020	151	80	0	60	210	24	174	9.00e-46	154
Msa0291120	MtrunA17_Chr5g0438021	45.810	179	87	4	39	212	6	179	3.13e-45	152
Msa0291120	MtrunA17_Chr4g0013191	50.993	151	73	1	61	210	42	192	4.13e-45	152
Msa0291120	MtrunA17_Chr4g0013181	52.703	148	68	2	68	213	63	210	9.34e-45	152
Msa0291120	MtrunA17_Chr5g0432351	45.055	182	92	3	35	213	1	177	4.10e-44	149
Msa0291120	MtrunA17_Chr5g0432401	49.123	171	84	2	46	213	11	181	6.02e-44	148
Msa0291120	MtrunA17_Chr2g0322861	45.399	163	87	2	50	212	73	233	7.06e-44	150
Msa0291120	MtrunA17_Chr2g0299691	54.412	136	60	1	68	203	60	193	2.44e-43	149
Msa0291120	MtrunA17_Chr5g0432341	49.677	155	75	2	62	213	23	177	3.19e-43	147
Msa0291120	MtrunA17_Chr5g0400331	47.333	150	79	0	64	213	26	175	4.56e-43	147
Msa0291120	MtrunA17_Chr3g0106901	48.765	162	83	0	51	212	18	179	9.50e-43	146
Msa0291120	MtrunA17_Chr1g0194271	42.286	175	98	2	41	213	8	181	2.46e-42	145
Msa0291120	MtrunA17_Chr1g0194151	42.286	175	98	2	41	213	8	181	9.14e-42	144
Msa0291120	MtrunA17_Chr5g0432331	48.387	155	77	2	62	213	54	208	1.08e-41	144
Msa0291120	MtrunA17_Chr5g0421411	53.509	114	53	0	90	203	7	120	1.13e-41	142
Msa0291120	MtrunA17_Chr4g0075241	42.529	174	99	1	40	212	4	177	2.58e-41	142
Msa0291120	MtrunA17_Chr4g0024121	41.573	178	97	3	33	210	2	172	5.61e-41	142
Msa0291120	MtrunA17_Chr7g0254201	46.479	142	73	2	62	203	18	156	1.19e-40	140
Msa0291120	MtrunA17_Chr4g0063671	46.405	153	77	3	51	203	8	155	5.93e-40	139
Msa0291120	MtrunA17_Chr1g0188431	44.898	147	79	2	64	210	39	183	1.84e-39	137
Msa0291120	MtrunA17_Chr3g0107881	46.497	157	81	2	60	213	23	179	1.94e-39	137
Msa0291120	MtrunA17_Chr2g0278671	44.805	154	81	3	59	212	19	168	2.78e-39	137
Msa0291120	MtrunA17_Chr7g0254231	45.270	148	78	2	62	209	20	164	5.06e-39	136
Msa0291120	MtrunA17_Chr6g0477071	40.237	169	93	3	45	213	41	201	9.25e-39	136
Msa0291120	MtrunA17_Chr8g0371381	41.290	155	85	3	59	211	21	171	2.03e-38	135
Msa0291120	MtrunA17_Chr1g0157051	42.466	146	82	2	68	213	28	171	1.11e-37	133
Msa0291120	MtrunA17_Chr3g0114491	57.273	110	47	0	63	172	17	126	1.65e-37	127
Msa0291120	MtrunA17_Chr2g0279041	46.207	145	73	3	67	211	30	169	4.96e-37	131
Msa0291120	MtrunA17_Chr7g0268501	39.759	166	97	2	46	211	7	169	1.72e-36	130
Msa0291120	MtrunA17_Chr7g0268521	39.759	166	97	2	46	211	7	169	1.72e-36	130
Msa0291120	MtrunA17_Chr5g0405991	40.523	153	89	2	59	211	18	168	3.61e-36	129
Msa0291120	MtrunA17_Chr6g0460711	44.156	154	82	3	56	209	14	163	4.14e-36	129
Msa0291120	MtrunA17_Chr3g0128061	38.824	170	101	1	41	210	6	172	4.39e-36	129
Msa0291120	MtrunA17_Chr2g0316481	42.515	167	87	3	49	207	55	220	2.13e-35	129
Msa0291120	MtrunA17_Chr2g0316791	42.331	163	85	3	49	203	55	216	2.89e-35	128
Msa0291120	MtrunA17_Chr1g0204011	41.060	151	87	2	60	210	23	171	2.90e-35	127
Msa0291120	MtrunA17_Chr2g0316831	41.718	163	86	3	49	203	91	252	2.05e-34	127
Msa0291120	MtrunA17_Chr2g0316811	40.719	167	90	3	49	207	29	194	2.68e-34	124
Msa0291120	MtrunA17_Chr4g0076211	43.846	130	66	3	69	198	46	168	1.19e-33	122
Msa0291120	MtrunA17_Chr2g0316191	41.615	161	85	3	49	201	55	214	2.22e-33	123
Msa0291120	MtrunA17_Chr2g0296621	42.336	137	71	2	56	188	38	170	3.00e-33	122
Msa0291120	MtrunA17_Chr5g0401431	39.665	179	103	3	37	212	2	178	4.55e-33	121
Msa0291120	MtrunA17_Chr1g0164891	41.611	149	84	2	68	213	93	241	1.20e-31	118
Msa0291120	MtrunA17_Chr1g0197411	35.714	182	111	3	35	213	1	179	5.42e-31	115
Msa0291120	MtrunA17_Chr2g0311251	44.218	147	78	3	64	208	11	155	1.63e-30	114
Msa0291120	MtrunA17_Chr3g0136751	39.474	152	88	2	59	210	20	167	2.61e-30	114
Msa0291120	MtrunA17_Chr6g0467161	43.506	154	74	4	52	203	41	183	2.87e-30	114
Msa0291120	MtrunA17_Chr4g0053871	40.000	160	93	2	56	212	19	178	5.92e-30	112
Msa0291120	MtrunA17_Chr6g0467251	42.282	149	82	3	64	210	36	182	1.57e-29	112
Msa0291120	MtrunA17_Chr7g0225221	37.662	154	96	0	59	212	20	173	4.50e-29	110
Msa0291120	MtrunA17_Chr6g0467121	32.727	220	129	6	2	210	5	216	8.26e-29	110
Msa0291120	MtrunA17_Chr5g0413051	34.641	153	98	2	60	210	69	221	2.90e-28	109
Msa0291120	MtrunA17_Chr1g0148021	38.667	150	90	1	63	210	26	175	1.22e-27	107
Msa0291120	MtrunA17_Chr2g0311241	34.081	223	93	7	37	209	28	246	2.10e-27	107
Msa0291120	MtrunA17_Chr4g0072091	40.667	150	85	2	63	210	23	170	5.15e-27	105
Msa0291120	MtrunA17_Chr1g0181511	35.915	142	90	1	60	201	23	163	2.18e-26	103
Msa0291120	MtrunA17_Chr8g0364291	36.184	152	96	1	60	210	19	170	1.52e-25	101
Msa0291120	MtrunA17_Chr6g0451571	35.256	156	97	3	60	212	30	184	2.71e-25	100
Msa0291120	MtrunA17_Chr4g0046131	37.086	151	92	2	63	210	41	191	1.02e-24	99.4
Msa0291120	MtrunA17_Chr1g0181481	38.462	143	81	2	62	201	25	163	1.04e-24	99.0
Msa0291120	MtrunA17_Chr2g0329641	36.735	147	88	3	63	209	35	176	1.79e-24	98.6
Msa0291120	MtrunA17_Chr1g0181431	36.364	143	84	2	62	201	25	163	1.99e-24	98.2
Msa0291120	MtrunA17_Chr4g0074851	37.584	149	82	3	60	201	24	168	3.28e-23	95.1
Msa0291120	MtrunA17_Chr2g0292281	79.630	54	11	0	157	210	18	71	7.67e-23	92.4
Msa0291120	MtrunA17_Chr4g0004591	34.641	153	61	1	61	213	74	187	2.32e-22	93.2
Msa0291120	MtrunA17_Chr2g0279061	49.485	97	44	3	108	204	12	103	2.29e-20	86.3
Msa0291120	MtrunA17_Chr1g0181491	41.818	110	56	3	61	167	9	113	8.47e-20	82.0
Msa0291120	MtrunA17_Chr6g0468731	54.930	71	28	2	103	173	22	88	1.58e-18	77.0
Msa0291120	MtrunA17_Chr2g0316141	41.176	102	57	2	110	209	11	111	2.72e-16	75.5
Msa0291120	MtrunA17_Chr2g0316181	41.176	102	57	2	110	209	11	111	2.72e-16	75.5
Msa0291120	MtrunA17_Chr7g0254181	39.604	101	56	2	111	210	6	102	1.47e-15	71.2
Msa0291120	MtrunA17_Chr1g0196191	55.556	63	27	1	106	168	27	88	8.08e-14	66.2
Msa0291120	MtrunA17_Chr7g0254171	40.541	74	43	1	109	182	3	75	6.09e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0291120	AT4G08770.1	59.211	152	62	0	60	211	20	171	1.06e-61	196
Msa0291120	AT3G49120.1	59.740	154	62	0	60	213	28	181	1.16e-61	196
Msa0291120	AT3G49110.1	58.442	154	64	0	60	213	29	182	1.58e-60	193
Msa0291120	AT4G08780.1	58.553	152	63	0	60	211	20	171	3.63e-60	192
Msa0291120	AT3G32980.1	57.516	153	65	0	60	212	27	179	1.91e-58	188
Msa0291120	AT5G06720.1	56.173	162	71	0	49	210	17	178	2.77e-58	187
Msa0291120	AT5G06730.1	55.488	164	73	0	49	212	18	181	3.44e-58	187
Msa0291120	AT2G38390.1	54.902	153	69	0	60	212	27	179	1.47e-56	183
Msa0291120	AT2G38380.1	55.556	153	68	0	60	212	27	179	6.07e-56	181
Msa0291120	AT1G44970.1	52.866	157	66	1	55	203	28	184	8.45e-54	176
Msa0291120	AT5G66390.1	47.093	172	88	1	35	203	1	172	5.39e-52	171
Msa0291120	AT2G18150.1	56.204	137	60	0	67	203	39	175	6.52e-52	171
Msa0291120	AT2G18140.1	56.618	136	59	0	68	203	39	174	1.45e-51	169
Msa0291120	AT3G50990.1	50.000	152	76	0	59	210	36	187	7.98e-50	165
Msa0291120	AT5G05340.1	51.656	151	73	0	62	212	28	178	2.10e-49	164
Msa0291120	AT4G36430.1	51.034	145	71	0	59	203	25	169	4.09e-49	163
Msa0291120	AT1G49570.1	54.225	142	65	0	62	203	46	187	1.16e-48	162
Msa0291120	AT4G16270.1	51.007	149	73	0	64	212	50	198	2.38e-47	159
Msa0291120	AT5G58400.1	49.383	162	78	2	50	210	19	177	3.88e-46	155
Msa0291120	AT1G68850.1	46.429	140	75	0	68	207	34	173	1.29e-45	154
Msa0291120	AT5G19890.1	49.143	175	78	4	29	203	2	165	1.95e-45	154
Msa0291120	AT3G03670.1	47.682	151	78	1	62	212	21	170	4.66e-45	152
Msa0291120	AT5G19880.1	54.478	134	59	1	60	191	21	154	7.36e-45	152
Msa0291120	AT2G35380.1	50.000	148	74	0	66	213	32	179	3.67e-44	150
Msa0291120	AT5G58390.1	49.342	152	76	1	60	210	17	168	1.08e-43	149
Msa0291120	AT2G22420.1	48.921	139	71	0	68	206	27	165	2.00e-43	148
Msa0291120	AT1G14550.1	49.007	151	76	1	61	210	23	173	6.12e-43	147
Msa0291120	AT1G14540.1	44.048	168	84	1	43	210	10	167	9.77e-43	146
Msa0291120	AT4G11290.1	43.210	162	92	0	49	210	10	171	3.52e-42	145
Msa0291120	AT4G25980.2	43.787	169	87	4	45	213	56	216	1.40e-41	142
Msa0291120	AT4G25980.1	43.787	169	87	4	45	213	11	171	3.83e-41	142
Msa0291120	AT3G21770.1	45.223	157	84	2	55	211	20	174	4.10e-41	142
Msa0291120	AT1G05260.1	41.040	173	100	2	40	212	2	172	7.17e-40	139
Msa0291120	AT5G17820.1	46.259	147	73	3	62	208	22	162	1.56e-39	138
Msa0291120	AT2G41480.1	42.604	169	85	5	40	203	2	163	4.24e-39	137
Msa0291120	AT5G51890.1	41.011	178	95	4	35	210	1	170	4.90e-39	137
Msa0291120	AT5G17820.2	46.259	147	73	3	62	208	75	215	7.26e-39	137
Msa0291120	AT5G39580.2	44.253	174	79	5	38	208	6	164	2.26e-38	133
Msa0291120	AT1G77100.1	43.023	172	94	4	41	212	2	169	2.44e-38	135
Msa0291120	AT4G26010.1	45.333	150	79	2	59	208	17	163	3.06e-38	134
Msa0291120	AT1G71695.1	46.897	145	75	2	68	210	48	192	3.12e-38	135
Msa0291120	AT4G26010.2	45.333	150	79	2	59	208	45	191	5.13e-38	134
Msa0291120	AT5G64120.1	48.905	137	65	3	67	203	38	169	8.83e-38	134
Msa0291120	AT5G39580.1	44.253	174	79	6	38	208	6	164	8.92e-38	133
Msa0291120	AT1G05240.1	44.667	150	81	2	64	213	26	173	5.25e-37	132
Msa0291120	AT1G05250.1	44.667	150	81	2	64	213	26	173	5.25e-37	132
Msa0291120	AT4G33420.1	36.872	179	110	3	32	210	6	181	9.98e-36	128
Msa0291120	AT4G33870.1	39.456	147	88	1	62	208	66	211	1.82e-35	129
Msa0291120	AT4G33420.2	41.026	156	89	3	55	210	76	228	3.14e-35	128
Msa0291120	AT5G64100.1	44.898	147	75	3	67	213	40	180	3.21e-35	127
Msa0291120	AT5G42180.1	38.788	165	98	3	49	213	9	170	4.55e-35	126
Msa0291120	AT3G01190.1	42.262	168	88	6	48	213	11	171	7.79e-35	126
Msa0291120	AT5G14130.1	42.945	163	87	3	53	210	17	178	1.70e-34	125
Msa0291120	AT5G15180.1	41.447	152	86	2	60	210	27	176	1.85e-34	125
Msa0291120	AT5G14130.2	42.945	163	87	3	53	210	58	219	2.87e-34	125
Msa0291120	AT5G40150.1	41.667	156	90	1	56	210	24	179	9.93e-34	123
Msa0291120	AT1G34510.1	45.038	131	71	1	62	192	20	149	1.19e-33	122
Msa0291120	AT4G31760.1	41.975	162	86	3	35	193	1	157	3.61e-33	121
Msa0291120	AT5G64110.1	47.170	159	69	4	48	195	10	164	4.06e-33	121
Msa0291120	AT3G49960.1	41.860	172	92	5	43	210	9	176	5.69e-32	118
Msa0291120	AT3G17070.1	39.665	179	104	3	24	201	1	176	5.90e-32	119
Msa0291120	AT3G28200.1	39.869	153	91	1	59	210	16	168	5.92e-32	118
Msa0291120	AT5G67400.1	39.773	176	98	3	43	210	1	176	6.81e-32	118
Msa0291120	AT2G24800.2	43.704	135	69	2	62	193	29	159	1.28e-31	115
Msa0291120	AT4G37530.2	43.312	157	84	4	60	212	23	178	2.04e-31	116
Msa0291120	AT2G18980.1	41.317	167	87	4	50	210	9	170	3.67e-31	116
Msa0291120	AT4G37530.1	43.312	157	84	4	60	212	23	178	5.21e-31	116
Msa0291120	AT2G39040.1	38.411	151	92	1	62	211	44	194	2.00e-30	115
Msa0291120	AT2G24800.1	43.704	135	69	2	62	193	29	159	4.14e-30	114
Msa0291120	AT4G17690.1	40.541	148	78	3	64	202	26	172	1.18e-29	112
Msa0291120	AT5G47000.1	40.000	150	80	3	62	202	31	179	1.45e-29	112
Msa0291120	AT4G30170.1	40.909	154	82	3	61	210	24	172	2.43e-29	111
Msa0291120	AT5G22410.1	40.667	150	81	4	62	209	26	169	2.07e-27	106
Msa0291120	AT1G24110.1	35.882	170	104	3	45	212	5	171	7.83e-26	102
Msa0291120	AT4G37520.1	40.645	155	87	4	62	212	25	178	1.35e-25	101
Msa0291120	AT2G37130.1	38.406	138	77	3	60	193	26	159	1.08e-24	99.4
Msa0291120	AT1G30870.1	38.760	129	71	2	64	188	47	171	2.68e-24	98.6
Msa0291120	AT4G37520.2	40.000	155	85	5	62	212	25	175	2.90e-24	98.2
Msa0291120	AT2G43480.1	34.054	185	103	6	41	212	1	179	1.58e-23	96.3
Msa0291120	AT4G21960.1	37.681	138	79	2	68	202	35	168	1.64e-23	96.3
Msa0291120	AT2G37130.2	39.231	130	71	3	68	193	3	128	4.37e-23	94.4
Msa0291120	AT2G34060.1	37.063	143	85	3	63	201	41	182	2.01e-22	93.6
Msa0291120	AT5G24070.1	36.806	144	83	4	68	209	39	176	5.74e-22	92.0
Msa0291120	AT2G35380.2	52.273	88	42	0	123	210	1	88	1.51e-21	89.4
Msa0291120	AT3G17070.2	44.330	97	52	2	106	201	18	113	2.09e-15	73.2

Find 35 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGAGTGAGCAAACAGCTTT+TGG	0.284734	2_3:-39254008	Msa0291120:CDS
TGCTGAAATTTCCTCTGTTC+TGG	0.292342	2_3:-39253880	Msa0291120:intron
ACTTGATAATTCCTTCTATA+GGG	0.325295	2_3:-39254432	Msa0291120:CDS
AACTTGATAATTCCTTCTAT+AGG	0.337654	2_3:-39254433	Msa0291120:CDS
AAACTATCTCTTCTTCCTAA+TGG	0.358275	2_3:+39252756	Msa0291110:CDS
CCTAATGGCACTTTCCAATC+AGG	0.380919	2_3:+39252771	Msa0291110:CDS
CGAACAATGGAATGAACATT+AGG	0.390558	2_3:+39254401	None:intergenic
GGAAATAACAACTCAATAAG+AGG	0.392602	2_3:-39253987	Msa0291120:CDS
TAACAACTCAATAAGAGGTT+TGG	0.401893	2_3:-39253982	Msa0291120:CDS
TGCTGTGTAGTGGTTGTGCT+TGG	0.416566	2_3:-39254482	Msa0291120:CDS
TGCAGGCTCATGGTCCTGAT+TGG	0.421033	2_3:-39252785	Msa0291120:intron
AGGACAGGTGTCCCTATAGA+AGG	0.439641	2_3:+39254421	None:intergenic
CCTGATTGGAAAGTGCCATT+AGG	0.443282	2_3:-39252771	Msa0291120:CDS
TATTTATTTATAGAAAGAAA+TGG	0.448659	2_3:+39254596	None:intergenic
TTACTTGAACAAAGCAATCA+TGG	0.449029	2_3:+39254312	None:intergenic
CCATTGTTCGTGAAGTACTA+AGG	0.455847	2_3:-39254388	Msa0291120:CDS
CTAAGGTTGAAAGCGGGACT+AGG	0.465831	2_3:+39252699	Msa0291110:CDS
TGTGTAGTGGTTGTGCTTGG+AGG	0.472368	2_3:-39254479	Msa0291120:CDS
TCAGCACAAGAAACAGTGTT+AGG	0.474603	2_3:+39253918	None:intergenic
GTGTAGTGGTTGTGCTTGGA+GGG	0.511558	2_3:-39254478	Msa0291120:CDS
CTCTTCTTTCAATCTCACAT+TGG	0.521480	2_3:-39254513	Msa0291120:CDS
AAATAAATACATCGCATATG+TGG	0.532404	2_3:-39254582	Msa0291120:CDS
CCTTAGTACTTCACGAACAA+TGG	0.533136	2_3:+39254388	None:intergenic
TAAAGCACAAAATGAAATGC+AGG	0.534608	2_3:-39254636	None:intergenic
AAGTTGTGCATTTGAAGAGA+AGG	0.538902	2_3:+39254451	None:intergenic
TAACATAATTTGCAGGCTCA+TGG	0.546239	2_3:-39252795	Msa0291120:intron
GGCAGCTTTGTGCTGTGTAG+TGG	0.549901	2_3:-39254492	Msa0291120:CDS
AGTTGTGCATTTGAAGAGAA+GGG	0.569161	2_3:+39254452	None:intergenic
CTCACTCGTAATCGTCGAAG+TGG	0.599207	2_3:+39254022	None:intergenic
AATGGAATGAACATTAGGAC+AGG	0.605201	2_3:+39254406	None:intergenic
CAGTTCACTAAGGTTGAAAG+CGG	0.609485	2_3:+39252692	Msa0291110:CDS
AGTTCACTAAGGTTGAAAGC+GGG	0.618851	2_3:+39252693	Msa0291110:CDS
TTGAGCTCTAGACTTAAGTG+TGG	0.646936	2_3:+39254556	None:intergenic
TATGGAACATACCAGAACAG+AGG	0.692344	2_3:+39253869	None:intergenic
ATCAAACTAGCAAGTATACG+AGG	0.711443	2_3:+39254347	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTTATTTATTTATTTTTA+TGG	+	chr2_3:39253552-39253571	None:intergenic	0.0%
!!!	TATTTATTTATTTATTTTTA+TGG	+	chr2_3:39253552-39253571	None:intergenic	0.0%
!!	TATTTATTTATAGAAAGAAA+TGG	+	chr2_3:39252715-39252734	Msa0291110:CDS	10.0%
!!!	TTCATCATTTTTAATTAATT+AGG	-	chr2_3:39253025-39253044	Msa0291120:intron	10.0%
!!	TAAAAAAAAATAGTACATAT+TGG	+	chr2_3:39253150-39253169	None:intergenic	10.0%
!!!	TACTATTTTTTTTTAAAACT+CGG	-	chr2_3:39253155-39253174	Msa0291120:intron	10.0%
!!!	AAAAATTGAAGTATTTATTA+AGG	+	chr2_3:39253895-39253914	None:intergenic	10.0%
!!!	AATTCTTCATTTTTTTTTTA+AGG	-	chr2_3:39254454-39254473	Msa0291120:CDS	10.0%
!!	TATTTATTTATAGAAAGAAA+TGG	+	chr2_3:39252715-39252734	Msa0291110:CDS	10.0%
!!!	TTCATCATTTTTAATTAATT+AGG	-	chr2_3:39253025-39253044	Msa0291120:intron	10.0%
!!	TAAAAAAAAATAGTACATAT+TGG	+	chr2_3:39253150-39253169	None:intergenic	10.0%
!!!	TACTATTTTTTTTTAAAACT+CGG	-	chr2_3:39253155-39253174	Msa0291120:intron	10.0%
!!!	AAAAATTGAAGTATTTATTA+AGG	+	chr2_3:39253895-39253914	None:intergenic	10.0%
!!!	AATTCTTCATTTTTTTTTTA+AGG	-	chr2_3:39254454-39254473	Msa0291120:CDS	10.0%
!!	TTTATATCTATGTTTATGAA+AGG	-	chr2_3:39253236-39253255	Msa0291120:intron	15.0%
!!	TTATATCTATGTTTATGAAA+GGG	-	chr2_3:39253237-39253256	Msa0291120:intron	15.0%
!!!	ATTTATTTATTTTTATGGCA+AGG	+	chr2_3:39253547-39253566	None:intergenic	15.0%
!!!	TATTGATTTGTTTACTATTA+TGG	-	chr2_3:39254098-39254117	Msa0291120:intron	15.0%
!!	TTTATATCTATGTTTATGAA+AGG	-	chr2_3:39253236-39253255	Msa0291120:intron	15.0%
!!	TTATATCTATGTTTATGAAA+GGG	-	chr2_3:39253237-39253256	Msa0291120:intron	15.0%
!!!	ATTTATTTATTTTTATGGCA+AGG	+	chr2_3:39253547-39253566	None:intergenic	15.0%
!!!	TATTGATTTGTTTACTATTA+TGG	-	chr2_3:39254098-39254117	Msa0291120:intron	15.0%
!!!	TTCTAAATCATGTTTAGTTT+TGG	-	chr2_3:39253054-39253073	Msa0291120:intron	20.0%
!!!	TTTTACCAAAAACTACAATT+TGG	+	chr2_3:39253085-39253104	None:intergenic	20.0%
!!!	CAAATACCAAAAATGTTTTT+CGG	+	chr2_3:39253204-39253223	None:intergenic	20.0%
!!	AAACAAATCAATACTTACTA+AGG	+	chr2_3:39254091-39254110	None:intergenic	20.0%
!!	ATTTGTTTACTATTATGGTA+AGG	-	chr2_3:39254103-39254122	Msa0291120:intron	20.0%
!!	TTTGTTTACTATTATGGTAA+GGG	-	chr2_3:39254104-39254123	Msa0291120:intron	20.0%
!!	TGGAAATTATGAATTGAAAT+TGG	-	chr2_3:39254145-39254164	Msa0291120:intron	20.0%
!!!	AAATTTATTTCTCAAAAGGT+TGG	-	chr2_3:39254171-39254190	Msa0291120:intron	20.0%
!!!	TTGGTAATTAATTTTTTTCG+TGG	-	chr2_3:39254190-39254209	Msa0291120:intron	20.0%
!!	TTCATTTGCATTTATGATAT+TGG	+	chr2_3:39254266-39254285	None:intergenic	20.0%
!!	AAGCAATATACATAATTAGA+TGG	-	chr2_3:39254306-39254325	Msa0291120:intron	20.0%
!!!	ATTCTAATAACATAATTTGC+AGG	-	chr2_3:39254506-39254525	Msa0291120:CDS	20.0%
!!!	TTCTAAATCATGTTTAGTTT+TGG	-	chr2_3:39253054-39253073	Msa0291120:intron	20.0%
!!!	TTTTACCAAAAACTACAATT+TGG	+	chr2_3:39253085-39253104	None:intergenic	20.0%
!!!	CAAATACCAAAAATGTTTTT+CGG	+	chr2_3:39253204-39253223	None:intergenic	20.0%
!!	AAACAAATCAATACTTACTA+AGG	+	chr2_3:39254091-39254110	None:intergenic	20.0%
!!	ATTTGTTTACTATTATGGTA+AGG	-	chr2_3:39254103-39254122	Msa0291120:intron	20.0%
!!	TTTGTTTACTATTATGGTAA+GGG	-	chr2_3:39254104-39254123	Msa0291120:intron	20.0%
!!	TGGAAATTATGAATTGAAAT+TGG	-	chr2_3:39254145-39254164	Msa0291120:intron	20.0%
!!!	AAATTTATTTCTCAAAAGGT+TGG	-	chr2_3:39254171-39254190	Msa0291120:intron	20.0%
!!!	TTGGTAATTAATTTTTTTCG+TGG	-	chr2_3:39254190-39254209	Msa0291120:intron	20.0%
!!	TTCATTTGCATTTATGATAT+TGG	+	chr2_3:39254266-39254285	None:intergenic	20.0%
!!	AAGCAATATACATAATTAGA+TGG	-	chr2_3:39254306-39254325	Msa0291120:intron	20.0%
!!!	ATTCTAATAACATAATTTGC+AGG	-	chr2_3:39254506-39254525	Msa0291120:CDS	20.0%
!	AAATAAATACATCGCATATG+TGG	-	chr2_3:39252726-39252745	Msa0291120:CDS	25.0%
!!	AACTTGATAATTCCTTCTAT+AGG	-	chr2_3:39252875-39252894	Msa0291120:intron	25.0%
!!	ACTTGATAATTCCTTCTATA+GGG	-	chr2_3:39252876-39252895	Msa0291120:intron	25.0%
!!	TAACTCCAAATTGTAGTTTT+TGG	-	chr2_3:39253077-39253096	Msa0291120:intron	25.0%
!	TTGTAAACTAGAACTAGAAA+TGG	+	chr2_3:39253476-39253495	None:intergenic	25.0%
!	ATGAAAGTGACATAAGAAAA+GGG	-	chr2_3:39253617-39253636	Msa0291120:intron	25.0%
!!!	GGGAAAAAAAAGTATTAAAG+TGG	-	chr2_3:39253638-39253657	Msa0291120:intron	25.0%
!	GTATTTATTAAGGACAAAAC+TGG	+	chr2_3:39253885-39253904	None:intergenic	25.0%
!	TGTCTTTCTCTAATAAAGTA+AGG	-	chr2_3:39253949-39253968	Msa0291120:CDS	25.0%
!	GAAACAAATGGAGTATATAA+TGG	-	chr2_3:39254037-39254056	Msa0291120:CDS	25.0%
!!	GTGCAAATTTATTTCTCAAA+AGG	-	chr2_3:39254167-39254186	Msa0291120:intron	25.0%
!	AATTCTTAACATGCATCTTA+AGG	-	chr2_3:39254217-39254236	Msa0291120:intron	25.0%
!	GCTAAATAAGAGTAAAAGAA+AGG	+	chr2_3:39254424-39254443	None:intergenic	25.0%
!	AAATAAATACATCGCATATG+TGG	-	chr2_3:39252726-39252745	Msa0291120:CDS	25.0%
!!	AACTTGATAATTCCTTCTAT+AGG	-	chr2_3:39252875-39252894	Msa0291120:intron	25.0%
!!	ACTTGATAATTCCTTCTATA+GGG	-	chr2_3:39252876-39252895	Msa0291120:intron	25.0%
!!	TAACTCCAAATTGTAGTTTT+TGG	-	chr2_3:39253077-39253096	Msa0291120:intron	25.0%
!	TTGTAAACTAGAACTAGAAA+TGG	+	chr2_3:39253476-39253495	None:intergenic	25.0%
!	ATGAAAGTGACATAAGAAAA+GGG	-	chr2_3:39253617-39253636	Msa0291120:intron	25.0%
!!!	GGGAAAAAAAAGTATTAAAG+TGG	-	chr2_3:39253638-39253657	Msa0291120:intron	25.0%
!	GTATTTATTAAGGACAAAAC+TGG	+	chr2_3:39253885-39253904	None:intergenic	25.0%
!	TGTCTTTCTCTAATAAAGTA+AGG	-	chr2_3:39253949-39253968	Msa0291120:CDS	25.0%
!	GAAACAAATGGAGTATATAA+TGG	-	chr2_3:39254037-39254056	Msa0291120:CDS	25.0%
!!	GTGCAAATTTATTTCTCAAA+AGG	-	chr2_3:39254167-39254186	Msa0291120:intron	25.0%
!	AATTCTTAACATGCATCTTA+AGG	-	chr2_3:39254217-39254236	Msa0291120:intron	25.0%
!	GCTAAATAAGAGTAAAAGAA+AGG	+	chr2_3:39254424-39254443	None:intergenic	25.0%
	TTACTTGAACAAAGCAATCA+TGG	+	chr2_3:39252999-39253018	None:intergenic	30.0%
!!	AAAATGTTTTTCGGATCAGT+CGG	+	chr2_3:39253195-39253214	None:intergenic	30.0%
!	ACTGATCCGAAAAACATTTT+TGG	-	chr2_3:39253195-39253214	Msa0291120:intron	30.0%
	GGAAATAACAACTCAATAAG+AGG	-	chr2_3:39253321-39253340	Msa0291120:intron	30.0%
	TAACAACTCAATAAGAGGTT+TGG	-	chr2_3:39253326-39253345	Msa0291120:intron	30.0%
	GAAATGGAACATAGAAGATA+TGG	+	chr2_3:39253460-39253479	None:intergenic	30.0%
	CATGAAAGTGACATAAGAAA+AGG	-	chr2_3:39253616-39253635	Msa0291120:intron	30.0%
	TGAAAGTGACATAAGAAAAG+GGG	-	chr2_3:39253618-39253637	Msa0291120:intron	30.0%
!	CTACAAATAATTTTCCGTGA+GGG	+	chr2_3:39253698-39253717	None:intergenic	30.0%
!	TCTACAAATAATTTTCCGTG+AGG	+	chr2_3:39253699-39253718	None:intergenic	30.0%
!	ATAAACTAACGAGACGTTTT+AGG	-	chr2_3:39253792-39253811	Msa0291120:intron	30.0%
	AAACTATCTCTTCTTCCTAA+TGG	+	chr2_3:39254555-39254574	None:intergenic	30.0%
!	AGGAAGATTTTCATTAGCAA+GGG	+	chr2_3:39254592-39254611	None:intergenic	30.0%
!	TAGGAAGATTTTCATTAGCA+AGG	+	chr2_3:39254593-39254612	None:intergenic	30.0%
	TTACTTGAACAAAGCAATCA+TGG	+	chr2_3:39252999-39253018	None:intergenic	30.0%
!!	AAAATGTTTTTCGGATCAGT+CGG	+	chr2_3:39253195-39253214	None:intergenic	30.0%
!	ACTGATCCGAAAAACATTTT+TGG	-	chr2_3:39253195-39253214	Msa0291120:intron	30.0%
	GGAAATAACAACTCAATAAG+AGG	-	chr2_3:39253321-39253340	Msa0291120:intron	30.0%
	TAACAACTCAATAAGAGGTT+TGG	-	chr2_3:39253326-39253345	Msa0291120:intron	30.0%
	GAAATGGAACATAGAAGATA+TGG	+	chr2_3:39253460-39253479	None:intergenic	30.0%
	CATGAAAGTGACATAAGAAA+AGG	-	chr2_3:39253616-39253635	Msa0291120:intron	30.0%
	TGAAAGTGACATAAGAAAAG+GGG	-	chr2_3:39253618-39253637	Msa0291120:intron	30.0%
!	CTACAAATAATTTTCCGTGA+GGG	+	chr2_3:39253698-39253717	None:intergenic	30.0%
!	TCTACAAATAATTTTCCGTG+AGG	+	chr2_3:39253699-39253718	None:intergenic	30.0%
!	ATAAACTAACGAGACGTTTT+AGG	-	chr2_3:39253792-39253811	Msa0291120:intron	30.0%
	AAACTATCTCTTCTTCCTAA+TGG	+	chr2_3:39254555-39254574	None:intergenic	30.0%
!	AGGAAGATTTTCATTAGCAA+GGG	+	chr2_3:39254592-39254611	None:intergenic	30.0%
!	TAGGAAGATTTTCATTAGCA+AGG	+	chr2_3:39254593-39254612	None:intergenic	30.0%
	CTCTTCTTTCAATCTCACAT+TGG	-	chr2_3:39252795-39252814	Msa0291120:intron	35.0%
	AGTTGTGCATTTGAAGAGAA+GGG	+	chr2_3:39252859-39252878	None:intergenic	35.0%
	AAGTTGTGCATTTGAAGAGA+AGG	+	chr2_3:39252860-39252879	None:intergenic	35.0%
	AATGGAATGAACATTAGGAC+AGG	+	chr2_3:39252905-39252924	None:intergenic	35.0%
	CGAACAATGGAATGAACATT+AGG	+	chr2_3:39252910-39252929	None:intergenic	35.0%
	ATCAAACTAGCAAGTATACG+AGG	+	chr2_3:39252964-39252983	None:intergenic	35.0%
	TAAAACTCGGTATCTGATCA+AGG	-	chr2_3:39253168-39253187	Msa0291120:intron	35.0%
!	CGTCTCGTTAGTTTATTCTT+AGG	+	chr2_3:39253788-39253807	None:intergenic	35.0%
	GACGCTTATTGTGAAACAAA+TGG	-	chr2_3:39254025-39254044	Msa0291120:CDS	35.0%
	AACATGCATCTTAAGGTACA+TGG	-	chr2_3:39254224-39254243	Msa0291120:intron	35.0%
!	TAACATAATTTGCAGGCTCA+TGG	-	chr2_3:39254513-39254532	Msa0291120:CDS	35.0%
	CTCTTCTTTCAATCTCACAT+TGG	-	chr2_3:39252795-39252814	Msa0291120:intron	35.0%
	AGTTGTGCATTTGAAGAGAA+GGG	+	chr2_3:39252859-39252878	None:intergenic	35.0%
	AAGTTGTGCATTTGAAGAGA+AGG	+	chr2_3:39252860-39252879	None:intergenic	35.0%
	AATGGAATGAACATTAGGAC+AGG	+	chr2_3:39252905-39252924	None:intergenic	35.0%
	CGAACAATGGAATGAACATT+AGG	+	chr2_3:39252910-39252929	None:intergenic	35.0%
	ATCAAACTAGCAAGTATACG+AGG	+	chr2_3:39252964-39252983	None:intergenic	35.0%
	TAAAACTCGGTATCTGATCA+AGG	-	chr2_3:39253168-39253187	Msa0291120:intron	35.0%
!	CGTCTCGTTAGTTTATTCTT+AGG	+	chr2_3:39253788-39253807	None:intergenic	35.0%
	GACGCTTATTGTGAAACAAA+TGG	-	chr2_3:39254025-39254044	Msa0291120:CDS	35.0%
	AACATGCATCTTAAGGTACA+TGG	-	chr2_3:39254224-39254243	Msa0291120:intron	35.0%
!	TAACATAATTTGCAGGCTCA+TGG	-	chr2_3:39254513-39254532	Msa0291120:CDS	35.0%
!!	TTGAGCTCTAGACTTAAGTG+TGG	+	chr2_3:39252755-39252774	Msa0291110:CDS	40.0%
	CCTTAGTACTTCACGAACAA+TGG	+	chr2_3:39252923-39252942	None:intergenic	40.0%
!	CCATTGTTCGTGAAGTACTA+AGG	-	chr2_3:39252920-39252939	Msa0291120:intron	40.0%
	TCAGCACAAGAAACAGTGTT+AGG	+	chr2_3:39253393-39253412	None:intergenic	40.0%
	TGCTGAAATTTCCTCTGTTC+TGG	-	chr2_3:39253428-39253447	Msa0291120:intron	40.0%
	TATGGAACATACCAGAACAG+AGG	+	chr2_3:39253442-39253461	None:intergenic	40.0%
!	ATTTGTCGTGTTTTCCCTCA+CGG	-	chr2_3:39253681-39253700	Msa0291120:intron	40.0%
	TGGTAAGGGAAATGCTAAAG+TGG	-	chr2_3:39254118-39254137	Msa0291120:intron	40.0%
	GGAAATGCTAAAGTGGAAAG+TGG	-	chr2_3:39254125-39254144	Msa0291120:intron	40.0%
	AGTTCACTAAGGTTGAAAGC+GGG	+	chr2_3:39254618-39254637	None:intergenic	40.0%
	CAGTTCACTAAGGTTGAAAG+CGG	+	chr2_3:39254619-39254638	None:intergenic	40.0%
!!	TTGAGCTCTAGACTTAAGTG+TGG	+	chr2_3:39252755-39252774	Msa0291110:CDS	40.0%
	CCTTAGTACTTCACGAACAA+TGG	+	chr2_3:39252923-39252942	None:intergenic	40.0%
!	CCATTGTTCGTGAAGTACTA+AGG	-	chr2_3:39252920-39252939	Msa0291120:intron	40.0%
	TCAGCACAAGAAACAGTGTT+AGG	+	chr2_3:39253393-39253412	None:intergenic	40.0%
	TGCTGAAATTTCCTCTGTTC+TGG	-	chr2_3:39253428-39253447	Msa0291120:intron	40.0%
	TATGGAACATACCAGAACAG+AGG	+	chr2_3:39253442-39253461	None:intergenic	40.0%
!	ATTTGTCGTGTTTTCCCTCA+CGG	-	chr2_3:39253681-39253700	Msa0291120:intron	40.0%
	TGGTAAGGGAAATGCTAAAG+TGG	-	chr2_3:39254118-39254137	Msa0291120:intron	40.0%
	GGAAATGCTAAAGTGGAAAG+TGG	-	chr2_3:39254125-39254144	Msa0291120:intron	40.0%
	AGTTCACTAAGGTTGAAAGC+GGG	+	chr2_3:39254618-39254637	None:intergenic	40.0%
	CAGTTCACTAAGGTTGAAAG+CGG	+	chr2_3:39254619-39254638	None:intergenic	40.0%
!	ACGAGTGAGCAAACAGCTTT+TGG	-	chr2_3:39253300-39253319	Msa0291120:intron	45.0%
	CCTAATGGCACTTTCCAATC+AGG	+	chr2_3:39254540-39254559	None:intergenic	45.0%
!!	CCTGATTGGAAAGTGCCATT+AGG	-	chr2_3:39254537-39254556	Msa0291120:CDS	45.0%
!	ACGAGTGAGCAAACAGCTTT+TGG	-	chr2_3:39253300-39253319	Msa0291120:intron	45.0%
	CCTAATGGCACTTTCCAATC+AGG	+	chr2_3:39254540-39254559	None:intergenic	45.0%
!!	CCTGATTGGAAAGTGCCATT+AGG	-	chr2_3:39254537-39254556	Msa0291120:CDS	45.0%
!!	AAATAAATAAATAATTATGT+TGG	-	chr2_3:39253563-39253582	Msa0291120:intron	5.0%
!!	AAATAAATAAATAATTATGT+TGG	-	chr2_3:39253563-39253582	Msa0291120:intron	5.0%
	TGCTGTGTAGTGGTTGTGCT+TGG	-	chr2_3:39252826-39252845	Msa0291120:intron	50.0%
	TGTGTAGTGGTTGTGCTTGG+AGG	-	chr2_3:39252829-39252848	Msa0291120:intron	50.0%
	GTGTAGTGGTTGTGCTTGGA+GGG	-	chr2_3:39252830-39252849	Msa0291120:intron	50.0%
	AGGACAGGTGTCCCTATAGA+AGG	+	chr2_3:39252890-39252909	None:intergenic	50.0%
	CTCACTCGTAATCGTCGAAG+TGG	+	chr2_3:39253289-39253308	None:intergenic	50.0%
	CTAAGGTTGAAAGCGGGACT+AGG	+	chr2_3:39254612-39254631	None:intergenic	50.0%
	TGCTGTGTAGTGGTTGTGCT+TGG	-	chr2_3:39252826-39252845	Msa0291120:intron	50.0%
	TGTGTAGTGGTTGTGCTTGG+AGG	-	chr2_3:39252829-39252848	Msa0291120:intron	50.0%
	GTGTAGTGGTTGTGCTTGGA+GGG	-	chr2_3:39252830-39252849	Msa0291120:intron	50.0%
	AGGACAGGTGTCCCTATAGA+AGG	+	chr2_3:39252890-39252909	None:intergenic	50.0%
	CTCACTCGTAATCGTCGAAG+TGG	+	chr2_3:39253289-39253308	None:intergenic	50.0%
	CTAAGGTTGAAAGCGGGACT+AGG	+	chr2_3:39254612-39254631	None:intergenic	50.0%
!	GGCAGCTTTGTGCTGTGTAG+TGG	-	chr2_3:39252816-39252835	Msa0291120:intron	55.0%
	TGCAGGCTCATGGTCCTGAT+TGG	-	chr2_3:39254523-39254542	Msa0291120:CDS	55.0%
!	GGCAGCTTTGTGCTGTGTAG+TGG	-	chr2_3:39252816-39252835	Msa0291120:intron	55.0%
	TGCAGGCTCATGGTCCTGAT+TGG	-	chr2_3:39254523-39254542	Msa0291120:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	39252683	39254647	39252683	ID=Msa0291120;Name=Msa0291120
chr2_3	mRNA	39252683	39254647	39252683	ID=Msa0291120-mRNA-1;Parent=Msa0291120;Name=Msa0291120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=5\|1\|1\|1\|0.5\|0.33\|3\|0\|213
chr2_3	exon	39252683	39252802	39252683	ID=Msa0291120-mRNA-1:exon:12734;Parent=Msa0291120-mRNA-1
chr2_3	exon	39253881	39254072	39253881	ID=Msa0291120-mRNA-1:exon:12733;Parent=Msa0291120-mRNA-1
chr2_3	exon	39254316	39254647	39254316	ID=Msa0291120-mRNA-1:exon:12732;Parent=Msa0291120-mRNA-1
chr2_3	five_prime_UTR	39254643	39254647	39254643	ID=Msa0291120-mRNA-1:five_prime_utr;Parent=Msa0291120-mRNA-1
chr2_3	CDS	39254316	39254642	39254316	ID=Msa0291120-mRNA-1:cds;Parent=Msa0291120-mRNA-1
chr2_3	CDS	39253881	39254072	39253881	ID=Msa0291120-mRNA-1:cds;Parent=Msa0291120-mRNA-1
chr2_3	CDS	39252683	39252802	39252683	ID=Msa0291120-mRNA-1:cds;Parent=Msa0291120-mRNA-1

Gene Sequence

>Msa0291120

ATGCAGGAACGTTGTATGCACATGCCATTTCTTTCTATAAATAAATACATCGCATATGTGGTAACCACACTTAAGTCTAGAGCTCAAAACAAGAGAAAAATAATGAACTCTTCTTTCAATCTCACATTGGCAGCTTTGTGCTGTGTAGTGGTTGTGCTTGGAGGGTTACCCTTCTCTTCAAATGCACAACTTGATAATTCCTTCTATAGGGACACCTGTCCTAATGTTCATTCCATTGTTCGTGAAGTACTAAGGAATGTTTCTAAGACAGATCCTCGTATACTTGCTAGTTTGATGAGAGTTCACTTCCATGATTGCTTTGTTCAAGGTTGTGATGCATCAATCTTGTTGAATACCACTTCGACGATTACGAGTGAGCAAACAGCTTTTGGAAATAACAACTCAATAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCAGTTGAAAATGCTTGTCCTAACACTGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTGAAATTTCCTCTGTTCTGGCTCATGGTCCTGATTGGAAAGTGCCATTAGGAAGAAGAGATAGTTTAACAGCAAATCTAACCCTTGCTAATGAAAATCTTCCTAGTCCCGCTTTCAACCTTAGTGAACTGAAATCTAAC

Protein sequence

>Msa0291120

MQERCMHMPFLSINKYIAYVVTTLKSRAQNKRKIMNSSFNLTLAALCCVVVVLGGLPFSSNAQLDNSFYRDTCPNVHSIVREVLRNVSKTDPRILASLMRVHFHDCFVQGCDASILLNTTSTITSEQTAFGNNNSIRGLDVVNQIKTAVENACPNTVSCADILALAAEISSVLAHGPDWKVPLGRRDSLTANLTLANENLPSPAFNLSELKSN