AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231190 MtrunA17_Chr2g0277491 98.799 583 1 1 1 577 1 583 0.0 1176
Msa0231190 MtrunA17_Chr8g0380651 89.825 570 50 2 16 577 20 589 0.0 996
Msa0231190 MtrunA17_Chr5g0434001 40.901 577 317 9 18 577 38 607 3.48e-157 463
Msa0231190 MtrunA17_Chr8g0375501 40.444 586 328 8 7 577 12 591 4.82e-152 449
Msa0231190 MtrunA17_Chr6g0480551 39.286 588 335 8 5 577 8 588 1.95e-147 437
Msa0231190 MtrunA17_Chr8g0342031 32.206 621 340 11 23 577 43 648 3.20e-108 338
Msa0231190 MtrunA17_Chr1g0150181 32.810 637 353 11 6 577 11 637 4.73e-108 337
Msa0231190 MtrunA17_Chr4g0026371 34.655 580 353 8 14 577 20 589 1.41e-106 332
Msa0231190 MtrunA17_Chr3g0136881 32.459 610 341 8 29 577 37 636 4.58e-103 324
Msa0231190 MtrunA17_Chr4g0065301 30.564 638 347 17 23 577 32 656 5.85e-82 270
Msa0231190 MtrunA17_Chr3g0120461 30.189 636 351 18 23 577 36 659 1.12e-70 239
Msa0231190 MtrunA17_Chr5g0448371 34.322 472 283 12 123 577 204 665 2.02e-69 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231190 AT1G10950.1 87.895 570 63 1 14 577 20 589 0.0 977
Msa0231190 AT5G37310.1 41.582 594 316 11 6 577 9 593 1.68e-155 458
Msa0231190 AT5G37310.2 41.582 594 316 11 6 577 9 593 1.68e-155 458
Msa0231190 AT2G01970.1 40.522 575 321 8 18 577 24 592 3.53e-153 452
Msa0231190 AT1G14670.1 41.913 575 313 8 18 577 24 592 2.70e-149 442
Msa0231190 AT1G08350.3 36.672 589 347 10 6 577 10 589 8.23e-127 385
Msa0231190 AT1G08350.2 36.672 589 347 10 6 577 10 589 8.23e-127 385
Msa0231190 AT3G13772.1 33.547 623 333 12 21 577 34 641 4.46e-114 353
Msa0231190 AT1G55130.1 33.065 620 340 12 21 577 30 637 5.11e-111 345
Msa0231190 AT1G08350.4 35.675 541 313 10 6 529 10 532 4.86e-106 329
Msa0231190 AT2G24170.1 33.172 618 342 10 21 577 30 637 2.48e-105 331
Msa0231190 AT1G08350.1 34.884 516 311 9 79 577 1 508 3.61e-104 323
Msa0231190 AT5G25100.1 31.511 622 350 10 21 577 34 644 1.99e-101 321
Msa0231190 AT5G10840.1 31.179 619 354 9 21 577 40 648 9.99e-101 319
Msa0231190 AT5G25100.2 31.922 614 342 10 29 577 49 651 1.35e-100 319
Msa0231190 AT5G35160.1 36.298 416 247 9 170 577 225 630 8.74e-69 234
Msa0231190 AT5G35160.2 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0231190 AT5G35160.3 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0231190 AT5G35160.4 36.298 416 247 9 170 577 253 658 1.71e-68 234
Msa0231190 AT4G12650.1 29.180 634 360 16 23 577 29 652 1.58e-66 229
Msa0231190 AT2G24170.2 29.147 422 229 9 23 383 32 444 1.22e-50 181

Find 190 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCCCTCTTGCACTTCT+TGG 0.145387 2_2:-3376876 Msa0231190:CDS
TTAACACGACATGGATTATT+TGG 0.152845 2_2:+3376822 None:intergenic
TTCCAAACTAGCTTCTATTT+TGG 0.154600 2_2:-3376211 Msa0231190:CDS
ACATGACATATTCTGTTAAA+TGG 0.187534 2_2:-3378125 Msa0231190:CDS
TGGTGGTTGTCTTTGTTATT+TGG 0.201206 2_2:-3376908 Msa0231190:CDS
GCTCTCACGTCAGTCATTTC+TGG 0.203783 2_2:-3377202 Msa0231190:CDS
TTCCTGCTTCCAAAGGTTTC+GGG 0.207653 2_2:+3378157 None:intergenic
CTAGAAACTTTATCTCAATT+TGG 0.208681 2_2:+3379788 None:intergenic
ATGTATTCTTTCTCGATAAT+AGG 0.214701 2_2:-3375848 Msa0231190:three_prime_UTR
CTTCCTGCTTCCAAAGGTTT+CGG 0.218082 2_2:+3378156 None:intergenic
CCATTCCTGTGCTTTGGAAT+TGG 0.234007 2_2:-3376993 Msa0231190:CDS
TTGTTGACCCAAAGGGTAAC+TGG 0.277984 2_2:+3379943 None:intergenic
CAAATTGAGATAAAGTTTCT+AGG 0.287579 2_2:-3379787 Msa0231190:intron
TCTGGTTTGTGTAGATTCAT+TGG 0.293456 2_2:-3377937 Msa0231190:intron
GTCATCTTGTTAGCTATTGT+TGG 0.295103 2_2:-3377496 Msa0231190:CDS
GGGGACCAAGCAATGTTTAT+AGG 0.303717 2_2:-3375899 Msa0231190:three_prime_UTR
ATGCAATTGAAAATAATTAC+TGG 0.315080 2_2:-3379614 Msa0231190:CDS
GGTGGTTGTCTTTGTTATTT+GGG 0.315967 2_2:-3376907 Msa0231190:CDS
ATTTCTCTTGTCTGTTTGTA+AGG 0.316494 2_2:-3375476 Msa0231190:three_prime_UTR
TTTGGAAGCAGGAAGATCTT+TGG 0.319931 2_2:-3378148 Msa0231190:CDS
TGTATTCTTTCTCGATAATA+GGG 0.320740 2_2:-3375847 Msa0231190:three_prime_UTR
ACACCGGTTTGATGTATATC+TGG 0.332461 2_2:-3378079 Msa0231190:CDS
ATCCAAAATAGAAGCTAGTT+TGG 0.342162 2_2:+3376209 None:intergenic
GCACAGTTGTTGGAAGAAAC+TGG 0.344242 2_2:-3376854 Msa0231190:CDS
TTCATGTTTAAGGGTATGTT+GGG 0.347802 2_2:-3378380 Msa0231190:intron
AAGTCCTCTTTCGCTCGTTT+TGG 0.348793 2_2:-3381575 Msa0231190:five_prime_UTR
TACAATAGATAAAGCGCGTT+TGG 0.361445 2_2:+3375649 None:intergenic
GCTCTTCTTTCAGCTGTTGT+TGG 0.362045 2_2:-3377553 Msa0231190:CDS
AGCAAAATATCAGACTCTTA+TGG 0.364219 2_2:-3375733 Msa0231190:three_prime_UTR
TTTCTTTCAGCTGCATCAAC+AGG 0.365235 2_2:-3376295 Msa0231190:CDS
CTATCCATTCTTTGAGCATC+AGG 0.369958 2_2:-3378055 Msa0231190:intron
CAACAGGTGTACTATGTCTA+TGG 0.372599 2_2:-3376427 Msa0231190:intron
GCACTTCTTGGCACAGTTGT+TGG 0.373505 2_2:-3376864 Msa0231190:CDS
ATGATGGTCATATTCCTAAC+TGG 0.377894 2_2:-3377893 Msa0231190:CDS
TGGTAATACTGCTCACAAAT+GGG 0.381202 2_2:-3379854 Msa0231190:CDS
CAGACATCAGTTCGTCAATC+TGG 0.381575 2_2:+3375676 None:intergenic
CTGGTAATACTGCTCACAAA+TGG 0.386160 2_2:-3379855 Msa0231190:CDS
CGCAATATCAAGTGTGACTA+AGG 0.386852 2_2:-3375946 Msa0231190:exon
TGCTCGGGAAGATGATGATT+TGG 0.389790 2_2:-3377819 Msa0231190:CDS
ACAATAGATAAAGCGCGTTT+GGG 0.394877 2_2:+3375650 None:intergenic
ATTCATGTTTAAGGGTATGT+TGG 0.395565 2_2:-3378381 Msa0231190:intron
CTTTCAGCTGTTGTTGGTAC+GGG 0.395892 2_2:-3377547 Msa0231190:CDS
AATCTGTGTTGTTGCCTGCT+TGG 0.399605 2_2:-3375431 None:intergenic
TTACTGGTTTGAATTCTTCA+TGG 0.405452 2_2:-3379598 Msa0231190:CDS
TTACCAGGTGGACGGCAAAA+TGG 0.406461 2_2:+3379871 None:intergenic
CCACTATCACTGTTCTTGTC+AGG 0.413713 2_2:+3378348 None:intergenic
GCTCACAAATGGGGCGGTCT+AGG 0.414878 2_2:-3379844 Msa0231190:CDS
ATGGGTGGACTGCTTCCCTT+TGG 0.418129 2_2:-3376738 Msa0231190:CDS
CAGATGACCCAGTTACCCTT+TGG 0.419210 2_2:-3379951 Msa0231190:CDS
GTCATTTCTGGTTATGTAAG+TGG 0.420638 2_2:-3377190 Msa0231190:CDS
TGTCTATGGCTTCATGCTAC+TGG 0.424731 2_2:-3376413 Msa0231190:CDS
GAAACCAAAACGAGCGAAAG+AGG 0.429843 2_2:+3381571 None:intergenic
CAAAGGGTAACTGGGTCATC+TGG 0.434940 2_2:+3379952 None:intergenic
GGGACCAAGCAATGTTTATA+GGG 0.438648 2_2:-3375898 Msa0231190:three_prime_UTR
GAGAGAGTCTCAATTCTTCA+AGG 0.439928 2_2:-3381600 Msa0231190:five_prime_UTR
TCATGATGACCCGAAACCTT+TGG 0.440658 2_2:-3378166 Msa0231190:CDS
TCTTTCAGCTGTTGTTGGTA+CGG 0.442889 2_2:-3377548 Msa0231190:CDS
TCATTTCTGGTTATGTAAGT+GGG 0.443328 2_2:-3377189 Msa0231190:CDS
TGTTTATAGGGTAGTATGAC+GGG 0.449024 2_2:-3375886 Msa0231190:three_prime_UTR
TCATCTTGTTAGCTATTGTT+GGG 0.449262 2_2:-3377495 Msa0231190:CDS
AGATGACCCAGTTACCCTTT+GGG 0.452042 2_2:-3379950 Msa0231190:CDS
AGGCCGGAGAGAGGAGGAGA+AGG 0.453628 2_2:+3381488 None:intergenic
TACCACTTCTTCTCAGGAAT+GGG 0.459819 2_2:+3376786 None:intergenic
CAATTCCAAAGCACAGGAAT+GGG 0.462340 2_2:+3376994 None:intergenic
CTTCAAATGTGCAGGAGCTG+TGG 0.465103 2_2:-3376007 Msa0231190:intron
TCTCTAGCAGCAATCCCCTT+TGG 0.469923 2_2:-3376936 Msa0231190:CDS
CCCTCTGTAGTTTCTCTGAT+GGG 0.471861 2_2:-3376756 Msa0231190:CDS
GCAGGAGCTGTGGGTCATCT+TGG 0.473464 2_2:-3375997 Msa0231190:intron
GTGAGGTACCACTTCTTCTC+AGG 0.473501 2_2:+3376780 None:intergenic
ACTTCCTCCACATACCTTCG+TGG 0.475365 2_2:-3375573 Msa0231190:three_prime_UTR
GACCCGAAACCTTTGGAAGC+AGG 0.477158 2_2:-3378159 Msa0231190:CDS
TCATAGACACCAATCCAGTT+AGG 0.479698 2_2:+3377879 None:intergenic
CCTGACAAGAACAGTGATAG+TGG 0.479831 2_2:-3378348 Msa0231190:CDS
CTCAGGAATGGGACGAGGAA+TGG 0.480945 2_2:+3376797 None:intergenic
GGCAAAGGTTAAACAGTTCA+AGG 0.487355 2_2:-3379637 Msa0231190:CDS
GGGGATGTACTCACGTAATG+GGG 0.490455 2_2:-3377167 Msa0231190:CDS
TAAATGCTGAGAACTACAAT+TGG 0.491042 2_2:-3376330 Msa0231190:CDS
CAAAGCTTTCAATTACAGCC+AGG 0.492077 2_2:+3375805 None:intergenic
GATTAAACCACGAAGGTATG+TGG 0.494149 2_2:+3375566 None:intergenic
GGCGGTCTAGGTGAGGTCCT+TGG 0.495626 2_2:-3379832 Msa0231190:CDS
GCAAGGATAAGAAGCCAAGC+AGG 0.495954 2_2:+3375417 None:intergenic
ATGACTATGCAAAGTATGCT+CGG 0.497038 2_2:-3377835 Msa0231190:CDS
AAAGCTTTGATTTAGAATGC+AGG 0.502555 2_2:-3375791 Msa0231190:three_prime_UTR
AGAGACGTCAGTGAAGAATC+TGG 0.503541 2_2:-3377622 Msa0231190:CDS
AAGTGATGCTGTAAGGATCA+TGG 0.504571 2_2:+3377019 None:intergenic
CATTTGTGAGCAGTATTACC+AGG 0.504871 2_2:+3379856 None:intergenic
TACTGGTTTGAATTCTTCAT+GGG 0.509222 2_2:-3379597 Msa0231190:intron
ACCTACTTTGTTGACCCAAA+GGG 0.510739 2_2:+3379936 None:intergenic
ATCACCTGATGCTCAAAGAA+TGG 0.511088 2_2:+3378051 None:intergenic
CCAATTCCAAAGCACAGGAA+TGG 0.511274 2_2:+3376993 None:intergenic
TGAATCCAATTCCAAAGCAC+AGG 0.511325 2_2:+3376988 None:intergenic
ACCCTCTGTAGTTTCTCTGA+TGG 0.513978 2_2:-3376757 Msa0231190:CDS
AGATGATGATTTGGAAACTC+TGG 0.515952 2_2:-3377810 Msa0231190:intron
TTCAAATGTGCAGGAGCTGT+GGG 0.516398 2_2:-3376006 Msa0231190:intron
CCGGAGAGAGGAGGAGAAGG+AGG 0.516747 2_2:+3381491 None:intergenic
GTTTCTTGAGGATTATTGTA+CGG 0.519218 2_2:+3379913 None:intergenic
ACAACCACCATTGTACCAAA+GGG 0.520818 2_2:+3376921 None:intergenic
CTCAATGAATATGCTGCCAA+AGG 0.521836 2_2:+3376722 None:intergenic
TACTTCCTTCTGGAATTACA+AGG 0.524010 2_2:-3376685 Msa0231190:intron
ACTACCCTATAAACATTGCT+TGG 0.525281 2_2:+3375894 None:intergenic
CTTTATCTATTGTACGTAGA+GGG 0.527548 2_2:-3375640 Msa0231190:three_prime_UTR
GGTCTAGGTGAGGTCCTTGG+TGG 0.529226 2_2:-3379829 Msa0231190:CDS
AAGCGAAGGCCGGAGAGAGG+AGG 0.529710 2_2:+3381482 None:intergenic
ATGGGAAAAGTGATGCTGTA+AGG 0.531501 2_2:+3377012 None:intergenic
CGGAAGCGAAGGCCGGAGAG+AGG 0.533115 2_2:+3381479 None:intergenic
GAGAGAGGAGGAGAAGGAGG+AGG 0.533714 2_2:+3381494 None:intergenic
TAATAATTATATGTTTCTTG+AGG 0.534391 2_2:+3379901 None:intergenic
TATGTGAAGACAAAGATGTC+AGG 0.536512 2_2:-3376238 Msa0231190:CDS
AGCAATCCCCTTTGGTACAA+TGG 0.537203 2_2:-3376928 Msa0231190:CDS
TCTGACTCGGAAGCGAAGGC+CGG 0.537290 2_2:+3381472 None:intergenic
ACCCTTTGGGTCAACAAAGT+AGG 0.537437 2_2:-3379937 Msa0231190:CDS
CGCTTCCGAGTCAGATCACA+AGG 0.538777 2_2:-3381464 Msa0231190:intron
GTACCACTTCTTCTCAGGAA+TGG 0.539757 2_2:+3376785 None:intergenic
AAAGATCTTCCTGCTTCCAA+AGG 0.543050 2_2:+3378150 None:intergenic
CAGGTGGACGGCAAAATGGC+AGG 0.544775 2_2:+3379875 None:intergenic
TGACTATGCAAAGTATGCTC+GGG 0.544864 2_2:-3377834 Msa0231190:CDS
AAGCTTTGATTTAGAATGCA+GGG 0.546525 2_2:-3375790 Msa0231190:three_prime_UTR
TTTGAATCTTGACGAGGCAA+AGG 0.547575 2_2:-3379652 Msa0231190:CDS
AGTCCAGATATACATCAAAC+CGG 0.549224 2_2:+3378076 None:intergenic
TGTTAAGTACAATACAGATC+AGG 0.549850 2_2:-3378292 Msa0231190:intron
TTCTTCTCAGGAATGGGACG+AGG 0.550039 2_2:+3376792 None:intergenic
CCTCCTTCTCCTCCTCTCTC+CGG 0.551038 2_2:-3381491 Msa0231190:CDS
GTTCGAATTTGTTTGTGAGG+AGG 0.551162 2_2:-3375975 Msa0231190:CDS
ACAGTATGTGTGACAATTGT+GGG 0.551779 2_2:-3376367 Msa0231190:CDS
AAAGCTTTCAATTACAGCCA+GGG 0.556254 2_2:+3375806 None:intergenic
ACGTCAGTGAAGAATCTGGC+TGG 0.556808 2_2:-3377618 Msa0231190:CDS
TCAATGAATATGCTGCCAAA+GGG 0.558339 2_2:+3376723 None:intergenic
GTGATCTGACTCGGAAGCGA+AGG 0.559770 2_2:+3381468 None:intergenic
AGATGAAGCCTCTGGTCATG+TGG 0.560859 2_2:-3375920 Msa0231190:three_prime_UTR
TTGCCTCGTCAAGATTCAAA+CGG 0.562495 2_2:+3379655 None:intergenic
TGTTGACCCAAAGGGTAACT+GGG 0.563185 2_2:+3379944 None:intergenic
GTGTCTAAAAGTGACATTAG+TGG 0.564033 2_2:+3378098 None:intergenic
TTGGTTCGAATTTGTTTGTG+AGG 0.564574 2_2:-3375978 Msa0231190:CDS
GGGATGTACTCACGTAATGG+GGG 0.566435 2_2:-3377166 Msa0231190:intron
GACAACCACCATTGTACCAA+AGG 0.567774 2_2:+3376920 None:intergenic
TCTTTCCAGGGAATGTGGAA+AGG 0.569777 2_2:-3379689 Msa0231190:intron
CTGAGAACTACAATTGGCAA+TGG 0.571157 2_2:-3376324 Msa0231190:CDS
TAAGGCTTAGATGAAGCCTC+TGG 0.573199 2_2:-3375928 Msa0231190:three_prime_UTR
GATGAAGCCTCTGGTCATGT+GGG 0.574281 2_2:-3375919 Msa0231190:three_prime_UTR
TACAGTATGTGTGACAATTG+TGG 0.574298 2_2:-3376368 Msa0231190:CDS
GTCCCATTCCTGAGAAGAAG+TGG 0.575509 2_2:-3376788 Msa0231190:CDS
GGTCATATTCCTAACTGGAT+TGG 0.577037 2_2:-3377888 Msa0231190:CDS
ATGTTTATAGGGTAGTATGA+CGG 0.578314 2_2:-3375887 Msa0231190:three_prime_UTR
GACCTACTTTGTTGACCCAA+AGG 0.580015 2_2:+3379935 None:intergenic
TCTGAAGAACATCGTGATGG+TGG 0.588131 2_2:+3381525 None:intergenic
ACGTAGAGGGGATGAAGTCT+CGG 0.590267 2_2:-3375627 Msa0231190:three_prime_UTR
ATTTCTGGTTATGTAAGTGG+GGG 0.596930 2_2:-3377187 Msa0231190:CDS
CTTAGTCACACTTGATATTG+CGG 0.601382 2_2:+3375947 None:intergenic
AACAATGAATGTTGTGACAA+TGG 0.601553 2_2:+3377231 None:intergenic
CATTTCTGGTTATGTAAGTG+GGG 0.604552 2_2:-3377188 Msa0231190:CDS
TCTGTAGTTTCTCTGATGGG+TGG 0.605774 2_2:-3376753 Msa0231190:CDS
TTTCTGGTTATGTAAGTGGG+GGG 0.606723 2_2:-3377186 Msa0231190:CDS
CTTGGTCCCCACATGACCAG+AGG 0.607120 2_2:+3375912 None:intergenic
ACTGACCTTGTGATCTGACT+CGG 0.610527 2_2:+3381459 None:intergenic
TGATGTTCTTGTGTGTGTAA+AGG 0.612278 2_2:+3378316 None:intergenic
GGAATGGTCTTAACACGACA+TGG 0.612418 2_2:+3376813 None:intergenic
ATGTTGTGACAATGGCTCCT+CGG 0.613655 2_2:+3377239 None:intergenic
GGTAATACTGCTCACAAATG+GGG 0.629300 2_2:-3379853 Msa0231190:CDS
TTTATCTATTGTACGTAGAG+GGG 0.631571 2_2:-3375639 Msa0231190:three_prime_UTR
GGGTAACTGGGTCATCTGGT+TGG 0.632836 2_2:+3379956 None:intergenic
TCATGTTTAAGGGTATGTTG+GGG 0.633391 2_2:-3378379 Msa0231190:intron
AATCCCCTTTGGTACAATGG+TGG 0.635651 2_2:-3376925 Msa0231190:CDS
ACTCACCTTGTAATTCCAGA+AGG 0.636618 2_2:+3376680 None:intergenic
TTGCCGTTTGAATCTTGACG+AGG 0.647649 2_2:-3379658 Msa0231190:CDS
ACTGTGCCAAGAAGTGCAAG+AGG 0.648561 2_2:+3376870 None:intergenic
CTTGGACTGGGAATTCTCTG+TGG 0.651131 2_2:-3376169 Msa0231190:intron
GAGAAACTACAGAGGGTGTG+AGG 0.651955 2_2:+3376763 None:intergenic
ATGAAGCCTCTGGTCATGTG+GGG 0.652097 2_2:-3375918 Msa0231190:three_prime_UTR
GCTTTATCTATTGTACGTAG+AGG 0.655749 2_2:-3375641 Msa0231190:three_prime_UTR
CAAATGGGGCGGTCTAGGTG+AGG 0.657435 2_2:-3379839 Msa0231190:CDS
CAATAAGTTCGTTGCCACCA+AGG 0.658441 2_2:+3379815 None:intergenic
AAATTTAGATTAAACCACGA+AGG 0.658768 2_2:+3375559 None:intergenic
GAGCAGTATTACCAGGTGGA+CGG 0.658884 2_2:+3379863 None:intergenic
TCTGGCTGGAAACTTGTGCA+TGG 0.660877 2_2:-3377604 Msa0231190:CDS
CTGTGCCAAGAAGTGCAAGA+GGG 0.661110 2_2:+3376871 None:intergenic
GAATCTGAAGAACATCGTGA+TGG 0.661843 2_2:+3381522 None:intergenic
TGTGGAGGAAGTACTCAGAA+CGG 0.668103 2_2:+3375584 None:intergenic
AGATCCATAAAATATAGCCA+CGG 0.678616 2_2:+3376956 None:intergenic
TAAACCACGAAGGTATGTGG+AGG 0.680873 2_2:+3375569 None:intergenic
CCCATCAGAGAAACTACAGA+GGG 0.680889 2_2:+3376756 None:intergenic
GTTTATAGGGTAGTATGACG+GGG 0.681283 2_2:-3375885 Msa0231190:three_prime_UTR
AATACTGCTCACAAATGGGG+CGG 0.688456 2_2:-3379850 Msa0231190:CDS
CAACCACCATTGTACCAAAG+GGG 0.709089 2_2:+3376922 None:intergenic
AGAAGAGCCAAACTGCGAGG+AGG 0.711367 2_2:+3377568 None:intergenic
GAAAGAAGAGCCAAACTGCG+AGG 0.712124 2_2:+3377565 None:intergenic
GTTGTTGGAAGAAACTGGAG+CGG 0.719624 2_2:-3376849 Msa0231190:CDS
CAGTATGTGTGACAATTGTG+GGG 0.720490 2_2:-3376366 Msa0231190:CDS
TTGTGAGCAGTATTACCAGG+TGG 0.723303 2_2:+3379859 None:intergenic
TGGATTCATCTTAAACACCG+TGG 0.734062 2_2:-3376973 Msa0231190:CDS
ACCCATCAGAGAAACTACAG+AGG 0.767119 2_2:+3376755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTACTATTAAAAATTAT+TGG + chr2_2:3375994-3376013 None:intergenic 10.0%
!! ATCAAACAAATTTAAATATA+CGG - chr2_2:3376192-3376211 Msa0231190:CDS 10.0%
!!! TTACATTTTATAAACAAAAA+AGG + chr2_2:3376220-3376239 None:intergenic 10.0%
!! ATTCTAGATATTAATTTAAT+GGG + chr2_2:3376952-3376971 None:intergenic 10.0%
!!! TTTTTTACTAAAAATCCATT+TGG + chr2_2:3376098-3376117 None:intergenic 15.0%
!! CATTCTAGATATTAATTTAA+TGG + chr2_2:3376953-3376972 None:intergenic 15.0%
!! TAATAATTATATGTTTCTTG+AGG + chr2_2:3377196-3377215 None:intergenic 15.0%
!! TTTAAACAAATAATCTTCAT+TGG + chr2_2:3378360-3378379 None:intergenic 15.0%
!!! TATTTTTAACTCTTTTATGA+TGG - chr2_2:3379185-3379204 Msa0231190:intron 15.0%
!! AAATACTTCAAAAAATAAAG+TGG + chr2_2:3379324-3379343 None:intergenic 15.0%
!! ATTTGCATTATAATGAATTA+AGG + chr2_2:3379819-3379838 None:intergenic 15.0%
!!! GAAAGTTTTTTTATTCTTAT+TGG - chr2_2:3380462-3380481 Msa0231190:intron 15.0%
!!! ACATATGAACTTTTATTATA+AGG + chr2_2:3381038-3381057 None:intergenic 15.0%
!! ACTATTAAAAATTATTGGAC+TGG + chr2_2:3375989-3376008 None:intergenic 20.0%
!! AAACAATGAATATCCTTTAT+TGG + chr2_2:3376320-3376339 None:intergenic 20.0%
!!! AAAGGATATTCATTGTTTTT+TGG - chr2_2:3376322-3376341 Msa0231190:CDS 20.0%
!! GATAAGCTAAAACTAAATAA+AGG + chr2_2:3376350-3376369 None:intergenic 20.0%
!! ATTGATAAGTTCATATGAAA+GGG + chr2_2:3376599-3376618 None:intergenic 20.0%
!!! GTTTTTTTTTTTTCTTTCCA+GGG - chr2_2:3377393-3377412 Msa0231190:intron 20.0%
!! ATGCAATTGAAAATAATTAC+TGG - chr2_2:3377480-3377499 Msa0231190:intron 20.0%
!!! GGATAATCAAGAAATTTTAA+AGG - chr2_2:3377576-3377595 Msa0231190:CDS 20.0%
!!! GTCTTTTATTAAATAAAGAC+TGG - chr2_2:3377622-3377641 Msa0231190:CDS 20.0%
!! TTCTTTCAAAAAAAATCCAA+CGG + chr2_2:3377715-3377734 None:intergenic 20.0%
!! TAATATCAATTAGAATGCTT+AGG + chr2_2:3378229-3378248 None:intergenic 20.0%
!!! CAATAATTTGTTTTTGGTAT+TGG - chr2_2:3378463-3378482 Msa0231190:intron 20.0%
!!! TGTTCTTTTATTCATGTTTA+AGG - chr2_2:3378704-3378723 Msa0231190:intron 20.0%
!!! GTTCTTTTATTCATGTTTAA+GGG - chr2_2:3378705-3378724 Msa0231190:intron 20.0%
!! ACTTCAAGCTAAAAAAATAT+GGG + chr2_2:3379081-3379100 None:intergenic 20.0%
!! ATATATATATATTCCATTCC+TGG - chr2_2:3379393-3379412 Msa0231190:intron 20.0%
!!! GTAACATTTTAGTTAGTTTA+AGG + chr2_2:3379651-3379670 None:intergenic 20.0%
!!! TAACTATGCTTATCTTTTTT+AGG - chr2_2:3380035-3380054 Msa0231190:intron 20.0%
!!! TATCTTTTTTAGGTAAAAGT+TGG - chr2_2:3380045-3380064 Msa0231190:intron 20.0%
!!! AGTTTAATTTTACTCTTTCT+GGG - chr2_2:3380957-3380976 Msa0231190:intron 20.0%
!!! AAGTCCTTTTATTACAAAAT+AGG - chr2_2:3381393-3381412 Msa0231190:intron 20.0%
!! ATCCATCTTTCAATTTTCTT+AGG - chr2_2:3375699-3375718 Msa0231190:three_prime_UTR 25.0%
!! TCCATCTTTCAATTTTCTTA+GGG - chr2_2:3375700-3375719 Msa0231190:three_prime_UTR 25.0%
!!! AAATGAACTTTTTTCGTTGT+AGG - chr2_2:3376244-3376263 Msa0231190:CDS 25.0%
!! TTTTCAACCAAACTTGTAAA+TGG + chr2_2:3376374-3376393 None:intergenic 25.0%
! TGATAAGAACAAATAGATGA+TGG + chr2_2:3376442-3376461 None:intergenic 25.0%
! TATCATTACAATTGTTGAAG+TGG - chr2_2:3376457-3376476 Msa0231190:intron 25.0%
! CATTGATAAGTTCATATGAA+AGG + chr2_2:3376600-3376619 None:intergenic 25.0%
! TCATATGAACTTATCAATGT+TGG - chr2_2:3376601-3376620 Msa0231190:intron 25.0%
! AAAAAAATAAGGACAACACT+TGG - chr2_2:3376699-3376718 Msa0231190:CDS 25.0%
! AAAAAATAAGGACAACACTT+GGG - chr2_2:3376700-3376719 Msa0231190:CDS 25.0%
! TTAAAATAAAGAGTGACATG+TGG + chr2_2:3376773-3376792 None:intergenic 25.0%
!!! GTGTACCAGTAATTATTTTT+GGG + chr2_2:3376909-3376928 None:intergenic 25.0%
!! TGTGTACCAGTAATTATTTT+TGG + chr2_2:3376910-3376929 None:intergenic 25.0%
! TTCTAATAAGCTCAAGAAAA+GGG + chr2_2:3377028-3377047 None:intergenic 25.0%
! ATTCTAATAAGCTCAAGAAA+AGG + chr2_2:3377029-3377048 None:intergenic 25.0%
! CTAGAAACTTTATCTCAATT+TGG + chr2_2:3377309-3377328 None:intergenic 25.0%
! CAAATTGAGATAAAGTTTCT+AGG - chr2_2:3377307-3377326 Msa0231190:intron 25.0%
! AGGTCTTAAAGGAAATAAAT+GGG + chr2_2:3377349-3377368 None:intergenic 25.0%
! TAGGTCTTAAAGGAAATAAA+TGG + chr2_2:3377350-3377369 None:intergenic 25.0%
!!! CGTTTTTTTTTTTTCTTTCC+AGG - chr2_2:3377392-3377411 Msa0231190:intron 25.0%
! TACATGTGTATAAGCTTATA+AGG - chr2_2:3377800-3377819 Msa0231190:intron 25.0%
! TCTCAATTAAAATAGGTTCA+TGG + chr2_2:3377844-3377863 None:intergenic 25.0%
! AAGAGCTTCTCAATTAAAAT+AGG + chr2_2:3377851-3377870 None:intergenic 25.0%
! AAACATCAAATGAAACAAAG+TGG - chr2_2:3377988-3378007 Msa0231190:intron 25.0%
! ATGTTAAAAAACATGATCCA+TGG + chr2_2:3378309-3378328 None:intergenic 25.0%
! TAAAACACAGTCATATCAAA+TGG + chr2_2:3378665-3378684 None:intergenic 25.0%
! ACATGACATATTCTGTTAAA+TGG - chr2_2:3378969-3378988 Msa0231190:intron 25.0%
! CACTTCAAGCTAAAAAAATA+TGG + chr2_2:3379082-3379101 None:intergenic 25.0%
!!! CATATTTTTTTAGCTTGAAG+TGG - chr2_2:3379080-3379099 Msa0231190:intron 25.0%
!! TGGTCAACACAAATATTTTT+AGG - chr2_2:3379447-3379466 Msa0231190:intron 25.0%
! ACAAACAAAATACATTCAAC+AGG + chr2_2:3379788-3379807 None:intergenic 25.0%
! ATTGATCTCATTTGTATTTC+TGG - chr2_2:3379962-3379981 Msa0231190:intron 25.0%
!!! ATTTGTATTTCTGGTTTGTT+TGG - chr2_2:3379971-3379990 Msa0231190:intron 25.0%
!! ATTTTGTATTTACTTCCTTC+TGG - chr2_2:3380399-3380418 Msa0231190:intron 25.0%
!!! CAGTTTAATTTTACTCTTTC+TGG - chr2_2:3380956-3380975 Msa0231190:intron 25.0%
! AGAAACATTCATATCAAGTA+TGG + chr2_2:3381069-3381088 None:intergenic 25.0%
! ATGTATTCTTTCTCGATAAT+AGG - chr2_2:3381246-3381265 Msa0231190:intron 25.0%
! TGTATTCTTTCTCGATAATA+GGG - chr2_2:3381247-3381266 Msa0231190:intron 25.0%
! AAATTTAGATTAAACCACGA+AGG + chr2_2:3381538-3381557 None:intergenic 25.0%
AAATTGAAAGATGGATCTGA+AGG + chr2_2:3375695-3375714 None:intergenic 30.0%
TGTTTCGAATTACGTAAACA+TGG - chr2_2:3375808-3375827 Msa0231190:three_prime_UTR 30.0%
ACTATCTGAATCTTCATTCA+GGG + chr2_2:3375965-3375984 None:intergenic 30.0%
!! ATATGTTCTGATGAGTTGAT+AGG - chr2_2:3376134-3376153 Msa0231190:intron 30.0%
! TTGTTTGATAGTTGCTGTAT+AGG + chr2_2:3376181-3376200 None:intergenic 30.0%
CTTATCTCCATTTACAAGTT+TGG - chr2_2:3376364-3376383 Msa0231190:CDS 30.0%
AAGTTTGGTTGAAAATTGCA+AGG - chr2_2:3376379-3376398 Msa0231190:CDS 30.0%
AGTTTGGTTGAAAATTGCAA+GGG - chr2_2:3376380-3376399 Msa0231190:CDS 30.0%
!!! GAGTTCTTAGTCTTTTTTGA+TGG - chr2_2:3376415-3376434 Msa0231190:CDS 30.0%
ATATGGCATACTTATCCAAT+GGG - chr2_2:3376493-3376512 Msa0231190:intron 30.0%
! TCTCTTGACTTTAAGAACTA+GGG - chr2_2:3376559-3376578 Msa0231190:intron 30.0%
ATGTTGGATATCACTTCATT+TGG - chr2_2:3376617-3376636 Msa0231190:intron 30.0%
!! GAAGCTTTTTCTTTGTGTTA+TGG - chr2_2:3376642-3376661 Msa0231190:intron 30.0%
! TTCGCGTTGACAAAAAAATA+AGG - chr2_2:3376688-3376707 Msa0231190:CDS 30.0%
TTTCTTCTCTCTCTTTCATA+AGG + chr2_2:3376818-3376837 None:intergenic 30.0%
!!! TTATTTTTGGGACAACACTT+GGG + chr2_2:3376897-3376916 None:intergenic 30.0%
!!! ATTATTTTTGGGACAACACT+TGG + chr2_2:3376898-3376917 None:intergenic 30.0%
GTTGTCCCAAAAATAATTAC+TGG - chr2_2:3376901-3376920 Msa0231190:CDS 30.0%
GTTTCTTGAGGATTATTGTA+CGG + chr2_2:3377184-3377203 None:intergenic 30.0%
!! TTACTGGTTTGAATTCTTCA+TGG - chr2_2:3377496-3377515 Msa0231190:CDS 30.0%
!! TACTGGTTTGAATTCTTCAT+GGG - chr2_2:3377497-3377516 Msa0231190:CDS 30.0%
!! TTGATGCATGTTTTTGTCAT+TGG - chr2_2:3377600-3377619 Msa0231190:CDS 30.0%
! TCTAAGAGGCAATATTTTGT+GGG + chr2_2:3377662-3377681 None:intergenic 30.0%
!! TTCTAAGAGGCAATATTTTG+TGG + chr2_2:3377663-3377682 None:intergenic 30.0%
CAAACACAGAAGCTAATTTA+AGG + chr2_2:3377745-3377764 None:intergenic 30.0%
AAGCTCTTATAATCCAATGT+GGG - chr2_2:3377863-3377882 Msa0231190:CDS 30.0%
! TTTGATTTAGAGAAGCTGAT+TGG + chr2_2:3377911-3377930 None:intergenic 30.0%
AGATGTGTTAAAAACACTGT+TGG + chr2_2:3377959-3377978 None:intergenic 30.0%
CTTCACATACAAGTTTCTAA+AGG + chr2_2:3378062-3378081 None:intergenic 30.0%
!!! GATTTTTTTTGACAACTGCA+TGG - chr2_2:3378133-3378152 Msa0231190:CDS 30.0%
TTAGGCAGAAATGTTATCAA+TGG + chr2_2:3378211-3378230 None:intergenic 30.0%
!!! CGCGAACAATAATTTGTTTT+TGG - chr2_2:3378457-3378476 Msa0231190:intron 30.0%
ATAGCTGAATAACTTACGTT+TGG - chr2_2:3378528-3378547 Msa0231190:intron 30.0%
! ATTCATGTTTAAGGGTATGT+TGG - chr2_2:3378713-3378732 Msa0231190:intron 30.0%
! TTCATGTTTAAGGGTATGTT+GGG - chr2_2:3378714-3378733 Msa0231190:intron 30.0%
TGTTAAGTACAATACAGATC+AGG - chr2_2:3378802-3378821 Msa0231190:intron 30.0%
!!! GATAACTTTGCTGTTTTGTT+AGG - chr2_2:3378840-3378859 Msa0231190:intron 30.0%
TTGATAAAACTTCACTTCTC+TGG - chr2_2:3379139-3379158 Msa0231190:intron 30.0%
TCATCTTGTTAGCTATTGTT+GGG - chr2_2:3379599-3379618 Msa0231190:CDS 30.0%
TTATCAATGACTGCACAATA+TGG - chr2_2:3379682-3379701 Msa0231190:CDS 30.0%
AACAATGAATGTTGTGACAA+TGG + chr2_2:3379866-3379885 None:intergenic 30.0%
!! TCATTTCTGGTTATGTAAGT+GGG - chr2_2:3379905-3379924 Msa0231190:CDS 30.0%
AGATCCATAAAATATAGCCA+CGG + chr2_2:3380141-3380160 None:intergenic 30.0%
! TTAACACGACATGGATTATT+TGG + chr2_2:3380275-3380294 None:intergenic 30.0%
AATTACAAGGTGAGTTACAA+TGG - chr2_2:3380422-3380441 Msa0231190:intron 30.0%
! TTACAATGGAATGCCTTATT+CGG - chr2_2:3380436-3380455 Msa0231190:intron 30.0%
AAAAACTTTCTACCCGAATA+AGG + chr2_2:3380452-3380471 None:intergenic 30.0%
!!! GATTTACTTGCACTTTTTCA+TGG - chr2_2:3380494-3380513 Msa0231190:intron 30.0%
AGAGTCAGTAATTATTCTCA+TGG - chr2_2:3380518-3380537 Msa0231190:intron 30.0%
! CAAATTGCAATGACCTTTTT+AGG - chr2_2:3380554-3380573 Msa0231190:intron 30.0%
TTGTGTTTAATCAGCTTTCA+CGG + chr2_2:3380596-3380615 None:intergenic 30.0%
TAAATGCTGAGAACTACAAT+TGG - chr2_2:3380764-3380783 Msa0231190:intron 30.0%
!! TTCCAAACTAGCTTCTATTT+TGG - chr2_2:3380883-3380902 Msa0231190:intron 30.0%
ATCCAAAATAGAAGCTAGTT+TGG + chr2_2:3380888-3380907 None:intergenic 30.0%
ATGTTTATAGGGTAGTATGA+CGG - chr2_2:3381207-3381226 Msa0231190:intron 30.0%
! AAAGCTTTGATTTAGAATGC+AGG - chr2_2:3381303-3381322 Msa0231190:intron 30.0%
! AAGCTTTGATTTAGAATGCA+GGG - chr2_2:3381304-3381323 Msa0231190:intron 30.0%
AGCAAAATATCAGACTCTTA+TGG - chr2_2:3381361-3381380 Msa0231190:intron 30.0%
! GGCACCTATTTTGTAATAAA+AGG + chr2_2:3381400-3381419 None:intergenic 30.0%
CTTTATCTATTGTACGTAGA+GGG - chr2_2:3381454-3381473 Msa0231190:intron 30.0%
TTTATCTATTGTACGTAGAG+GGG - chr2_2:3381455-3381474 Msa0231190:intron 30.0%
!!! TTTGCCTTCTATTGTTTTTG+AGG - chr2_2:3381580-3381599 Msa0231190:five_prime_UTR 30.0%
ACATCCTCAAAAACAATAGA+AGG + chr2_2:3381587-3381606 None:intergenic 30.0%
ATTTCTCTTGTCTGTTTGTA+AGG - chr2_2:3381618-3381637 Msa0231190:five_prime_UTR 30.0%
GCCCTAAGAAAATTGAAAGA+TGG + chr2_2:3375704-3375723 None:intergenic 35.0%
CTATCTGAATCTTCATTCAG+GGG + chr2_2:3375964-3375983 None:intergenic 35.0%
CACTATCTGAATCTTCATTC+AGG + chr2_2:3375966-3375985 None:intergenic 35.0%
! AGCAACATTGGACAAGTTTT+AGG + chr2_2:3376020-3376039 None:intergenic 35.0%
GTTGCTCAAACCCTAATAAA+AGG - chr2_2:3376054-3376073 Msa0231190:intron 35.0%
! TAGGCTTTTAAGCAAACATG+AGG - chr2_2:3376153-3376172 Msa0231190:intron 35.0%
! AGGCTTTTAAGCAAACATGA+GGG - chr2_2:3376154-3376173 Msa0231190:intron 35.0%
TGGCTGATATTGACCAATAA+AGG - chr2_2:3376304-3376323 Msa0231190:CDS 35.0%
GTTTGGTTGAAAATTGCAAG+GGG - chr2_2:3376381-3376400 Msa0231190:CDS 35.0%
TTTGGTTGAAAATTGCAAGG+GGG - chr2_2:3376382-3376401 Msa0231190:CDS 35.0%
TTACAATTGTTGAAGTGGTG+CGG - chr2_2:3376462-3376481 Msa0231190:intron 35.0%
CATATGGCATACTTATCCAA+TGG - chr2_2:3376492-3376511 Msa0231190:intron 35.0%
AGGAAATAAGTGAGTGCATA+AGG - chr2_2:3376527-3376546 Msa0231190:intron 35.0%
GGAAATAAGTGAGTGCATAA+GGG - chr2_2:3376528-3376547 Msa0231190:intron 35.0%
! CTCTCTTGACTTTAAGAACT+AGG - chr2_2:3376558-3376577 Msa0231190:intron 35.0%
GAAAATCACTTGTCACATTG+TGG - chr2_2:3376834-3376853 Msa0231190:CDS 35.0%
ATAAGCTCAAGAAAAGGGTA+TGG + chr2_2:3377023-3377042 None:intergenic 35.0%
TGGTAATACTGCTCACAAAT+GGG - chr2_2:3377240-3377259 Msa0231190:CDS 35.0%
TGTCTACTGATAGGTCTTAA+AGG + chr2_2:3377360-3377379 None:intergenic 35.0%
!!! TTTTTTCTTTCCAGGGAATG+TGG - chr2_2:3377400-3377419 Msa0231190:intron 35.0%
AAGATTCAAACGGCAAAAAG+TGG + chr2_2:3377432-3377451 None:intergenic 35.0%
CGATAAAACGACTGTACTTA+TGG - chr2_2:3377555-3377574 Msa0231190:CDS 35.0%
!! TATCCATACTGAGTTCTAAG+AGG + chr2_2:3377676-3377695 None:intergenic 35.0%
GAAGCTCTTATAATCCAATG+TGG - chr2_2:3377862-3377881 Msa0231190:CDS 35.0%
ACCTTGACTTAAAAAAACCC+AGG - chr2_2:3378254-3378273 Msa0231190:intron 35.0%
!!! ACCTGGGTTTTTTTAAGTCA+AGG + chr2_2:3378258-3378277 None:intergenic 35.0%
CAATTCTTCAATTATCCCCA+AGG + chr2_2:3378411-3378430 None:intergenic 35.0%
!!! TCTTTCCTTGCTGGTTTTAT+TGG - chr2_2:3378558-3378577 Msa0231190:intron 35.0%
ATCAACCAATAAAACCAGCA+AGG + chr2_2:3378566-3378585 None:intergenic 35.0%
! TCATGTTTAAGGGTATGTTG+GGG - chr2_2:3378715-3378734 Msa0231190:intron 35.0%
TGATGTTCTTGTGTGTGTAA+AGG + chr2_2:3378781-3378800 None:intergenic 35.0%
GATCAGGTGAGAAAATTGTT+TGG - chr2_2:3378818-3378837 Msa0231190:intron 35.0%
!!! TGCTGTTTTGTTAGGTGTTT+TGG - chr2_2:3378848-3378867 Msa0231190:intron 35.0%
!! GCTGTTTTGTTAGGTGTTTT+GGG - chr2_2:3378849-3378868 Msa0231190:intron 35.0%
!! CTGTTTTGTTAGGTGTTTTG+GGG - chr2_2:3378850-3378869 Msa0231190:intron 35.0%
TGCAAAAAGAGGACCAATTA+TGG + chr2_2:3378887-3378906 None:intergenic 35.0%
CATGAATGATCTGCAAAAAG+AGG + chr2_2:3378898-3378917 None:intergenic 35.0%
GTGTCTAAAAGTGACATTAG+TGG + chr2_2:3378999-3379018 None:intergenic 35.0%
!!! CTAATGTCACTTTTAGACAC+CGG - chr2_2:3378999-3379018 Msa0231190:intron 35.0%
AGTCCAGATATACATCAAAC+CGG + chr2_2:3379021-3379040 None:intergenic 35.0%
GTGGTGTTTATTATTGCCAT+TGG - chr2_2:3379099-3379118 Msa0231190:intron 35.0%
GACACATAGCATATAACCAA+TGG + chr2_2:3379118-3379137 None:intergenic 35.0%
! TCTGGTTTGTGTAGATTCAT+TGG - chr2_2:3379157-3379176 Msa0231190:intron 35.0%
ATGATGGTCATATTCCTAAC+TGG - chr2_2:3379201-3379220 Msa0231190:intron 35.0%
ATGACTATGCAAAGTATGCT+CGG - chr2_2:3379259-3379278 Msa0231190:intron 35.0%
! AGATGATGATTTGGAAACTC+TGG - chr2_2:3379284-3379303 Msa0231190:intron 35.0%
CACAATGAAATTTCCAGGAA+TGG + chr2_2:3379409-3379428 None:intergenic 35.0%
CATTCCTGGAAATTTCATTG+TGG - chr2_2:3379407-3379426 Msa0231190:intron 35.0%
!! TTGTGCATGGTGATGTTTTT+CGG - chr2_2:3379503-3379522 Msa0231190:intron 35.0%
GTCATCTTGTTAGCTATTGT+TGG - chr2_2:3379598-3379617 Msa0231190:CDS 35.0%
!! GTCATTTCTGGTTATGTAAG+TGG - chr2_2:3379904-3379923 Msa0231190:CDS 35.0%
!! CATTTCTGGTTATGTAAGTG+GGG - chr2_2:3379906-3379925 Msa0231190:CDS 35.0%
!! ATTTCTGGTTATGTAAGTGG+GGG - chr2_2:3379907-3379926 Msa0231190:CDS 35.0%
! AACACCGTGGCTATATTTTA+TGG - chr2_2:3380134-3380153 Msa0231190:intron 35.0%
!! TGGTGGTTGTCTTTGTTATT+TGG - chr2_2:3380186-3380205 Msa0231190:intron 35.0%
!! GGTGGTTGTCTTTGTTATTT+GGG - chr2_2:3380187-3380206 Msa0231190:intron 35.0%
TCAATGAATATGCTGCCAAA+GGG + chr2_2:3380374-3380393 None:intergenic 35.0%
!! TACTTCCTTCTGGAATTACA+AGG - chr2_2:3380409-3380428 Msa0231190:intron 35.0%
! TACAATGGAATGCCTTATTC+GGG - chr2_2:3380437-3380456 Msa0231190:intron 35.0%
TACAAGGGTTACTCCTAAAA+AGG + chr2_2:3380570-3380589 None:intergenic 35.0%
TGTGTTTAATCAGCTTTCAC+GGG + chr2_2:3380595-3380614 None:intergenic 35.0%
CAAAGTGGAAGGAAAAAGAA+TGG + chr2_2:3380643-3380662 None:intergenic 35.0%
! TTCTTTTTCCTTCCACTTTG+TGG - chr2_2:3380643-3380662 Msa0231190:intron 35.0%
TACAGTATGTGTGACAATTG+TGG - chr2_2:3380726-3380745 Msa0231190:intron 35.0%
ACAGTATGTGTGACAATTGT+GGG - chr2_2:3380727-3380746 Msa0231190:intron 35.0%
TATGTGAAGACAAAGATGTC+AGG - chr2_2:3380856-3380875 Msa0231190:intron 35.0%
GAATGTTTCTTCAAATGTGC+AGG - chr2_2:3381079-3381098 Msa0231190:intron 35.0%
! TTGGTTCGAATTTGTTTGTG+AGG - chr2_2:3381116-3381135 Msa0231190:intron 35.0%
CTTAGTCACACTTGATATTG+CGG + chr2_2:3381150-3381169 None:intergenic 35.0%
ACTACCCTATAAACATTGCT+TGG + chr2_2:3381203-3381222 None:intergenic 35.0%
TGTTTATAGGGTAGTATGAC+GGG - chr2_2:3381208-3381227 Msa0231190:intron 35.0%
AAAGCTTTCAATTACAGCCA+GGG + chr2_2:3381291-3381310 None:intergenic 35.0%
ACAATAGATAAAGCGCGTTT+GGG + chr2_2:3381447-3381466 None:intergenic 35.0%
TACAATAGATAAAGCGCGTT+TGG + chr2_2:3381448-3381467 None:intergenic 35.0%
GCTTTATCTATTGTACGTAG+AGG - chr2_2:3381453-3381472 Msa0231190:intron 35.0%
GAGAGAGTCTCAATTCTTCA+AGG - chr2_2:3375494-3375513 Msa0231190:three_prime_UTR 40.0%
!!! TTTTGGTTTCTCTCTCGTCA+AGG - chr2_2:3375536-3375555 Msa0231190:three_prime_UTR 40.0%
GAATCTGAAGAACATCGTGA+TGG + chr2_2:3375575-3375594 None:intergenic 40.0%
TATTAGGGTTTGAGCAACCT+GGG + chr2_2:3376052-3376071 None:intergenic 40.0%
TTATTAGGGTTTGAGCAACC+TGG + chr2_2:3376053-3376072 None:intergenic 40.0%
AACCCTAATAAAAGGACGAG+CGG - chr2_2:3376062-3376081 Msa0231190:intron 40.0%
! TTCCGCTCGTCCTTTTATTA+GGG + chr2_2:3376067-3376086 None:intergenic 40.0%
! GGCTTTTAAGCAAACATGAG+GGG - chr2_2:3376155-3376174 Msa0231190:intron 40.0%
TTCGTTGTAGGACTAAAGCT+AGG - chr2_2:3376256-3376275 Msa0231190:CDS 40.0%
TCGTTGTAGGACTAAAGCTA+GGG - chr2_2:3376257-3376276 Msa0231190:CDS 40.0%
!! GACTAAAGCTAGGGTTTTAG+TGG - chr2_2:3376266-3376285 Msa0231190:CDS 40.0%
TTGAAAATTGCAAGGGGGTT+GGG - chr2_2:3376387-3376406 Msa0231190:CDS 40.0%
GCATACTTATCCAATGGGAA+AGG - chr2_2:3376498-3376517 Msa0231190:intron 40.0%
TCCAATGGGAAAGGTTGTTT+AGG - chr2_2:3376507-3376526 Msa0231190:intron 40.0%
TCCTAAACAACCTTTCCCAT+TGG + chr2_2:3376511-3376530 None:intergenic 40.0%
! CTTGACTTTAAGAACTAGGG+TGG - chr2_2:3376562-3376581 Msa0231190:intron 40.0%
ACAACACTTGGGTGACAATA+TGG - chr2_2:3376711-3376730 Msa0231190:CDS 40.0%
ATCACTTGTCACATTGTGGT+TGG - chr2_2:3376838-3376857 Msa0231190:CDS 40.0%
ACCTACTTTGTTGACCCAAA+GGG + chr2_2:3377161-3377180 None:intergenic 40.0%
CATTTGTGAGCAGTATTACC+AGG + chr2_2:3377241-3377260 None:intergenic 40.0%
CTGGTAATACTGCTCACAAA+TGG - chr2_2:3377239-3377258 Msa0231190:CDS 40.0%
GGTAATACTGCTCACAAATG+GGG - chr2_2:3377241-3377260 Msa0231190:CDS 40.0%
AGACCTATCAGTAGACAAAC+TGG - chr2_2:3377363-3377382 Msa0231190:intron 40.0%
AAGCCAGTTTGTCTACTGAT+AGG + chr2_2:3377369-3377388 None:intergenic 40.0%
TTGCCTCGTCAAGATTCAAA+CGG + chr2_2:3377442-3377461 None:intergenic 40.0%
TTTGAATCTTGACGAGGCAA+AGG - chr2_2:3377442-3377461 Msa0231190:intron 40.0%
GGCAAAGGTTAAACAGTTCA+AGG - chr2_2:3377457-3377476 Msa0231190:intron 40.0%
! AGAGGCAATATTTTGTGGGT+TGG + chr2_2:3377658-3377677 None:intergenic 40.0%
TTGCCTCTTAGAACTCAGTA+TGG - chr2_2:3377670-3377689 Msa0231190:intron 40.0%
!! AACTTCACAAAAAGCACCGT+TGG - chr2_2:3377696-3377715 Msa0231190:intron 40.0%
CTTCTGTGTTTGTGTTTCGT+TGG - chr2_2:3377753-3377772 Msa0231190:intron 40.0%
ACAGAGAGTAAATCCCACAT+TGG + chr2_2:3377879-3377898 None:intergenic 40.0%
AATCAAGAAGATGCCATTGC+AGG - chr2_2:3377930-3377949 Msa0231190:intron 40.0%
CTAACAGTGATGTCAAATGC+CGG - chr2_2:3378089-3378108 Msa0231190:CDS 40.0%
! GAAATGTTATCAATGGCGGA+TGG + chr2_2:3378204-3378223 None:intergenic 40.0%
GGCAGAAATGTTATCAATGG+CGG + chr2_2:3378208-3378227 None:intergenic 40.0%
!! CGTTTTCAATACCTAGCCTT+GGG - chr2_2:3378392-3378411 Msa0231190:intron 40.0%
!!! GTTTTCAATACCTAGCCTTG+GGG - chr2_2:3378393-3378412 Msa0231190:intron 40.0%
CATATCAAATGGACAGAGAG+AGG + chr2_2:3378654-3378673 None:intergenic 40.0%
! GGTTCATGAAGTGCCATAAT+TGG - chr2_2:3378871-3378890 Msa0231190:intron 40.0%
AAAGATCTTCCTGCTTCCAA+AGG + chr2_2:3378947-3378966 None:intergenic 40.0%
TTTGGAAGCAGGAAGATCTT+TGG - chr2_2:3378946-3378965 Msa0231190:intron 40.0%
!! ACACCGGTTTGATGTATATC+TGG - chr2_2:3379015-3379034 Msa0231190:intron 40.0%
CTATCCATTCTTTGAGCATC+AGG - chr2_2:3379039-3379058 Msa0231190:intron 40.0%
ATCACCTGATGCTCAAAGAA+TGG + chr2_2:3379046-3379065 None:intergenic 40.0%
GGTCATATTCCTAACTGGAT+TGG - chr2_2:3379206-3379225 Msa0231190:intron 40.0%
TCATAGACACCAATCCAGTT+AGG + chr2_2:3379218-3379237 None:intergenic 40.0%
TGACTATGCAAAGTATGCTC+GGG - chr2_2:3379260-3379279 Msa0231190:intron 40.0%
TCTTTCAGCTGTTGTTGGTA+CGG - chr2_2:3379546-3379565 Msa0231190:intron 40.0%
CAACAGGAAAACTAGAGCAA+CGG + chr2_2:3379772-3379791 None:intergenic 40.0%
TTTCCTTTAATATGCAGCCG+AGG - chr2_2:3379838-3379857 Msa0231190:CDS 40.0%
!! TTTCTGGTTATGTAAGTGGG+GGG - chr2_2:3379908-3379927 Msa0231190:CDS 40.0%
AAGTGATGCTGTAAGGATCA+TGG + chr2_2:3380078-3380097 None:intergenic 40.0%
ATGGGAAAAGTGATGCTGTA+AGG + chr2_2:3380085-3380104 None:intergenic 40.0%
CAATTCCAAAGCACAGGAAT+GGG + chr2_2:3380103-3380122 None:intergenic 40.0%
TGAATCCAATTCCAAAGCAC+AGG + chr2_2:3380109-3380128 None:intergenic 40.0%
TGGATTCATCTTAAACACCG+TGG - chr2_2:3380121-3380140 Msa0231190:intron 40.0%
ACAACCACCATTGTACCAAA+GGG + chr2_2:3380176-3380195 None:intergenic 40.0%
TACCACTTCTTCTCAGGAAT+GGG + chr2_2:3380311-3380330 None:intergenic 40.0%
CTCAATGAATATGCTGCCAA+AGG + chr2_2:3380375-3380394 None:intergenic 40.0%
ACTCACCTTGTAATTCCAGA+AGG + chr2_2:3380417-3380436 None:intergenic 40.0%
CATAGACATAGTACACCTGT+TGG + chr2_2:3380669-3380688 None:intergenic 40.0%
CAACAGGTGTACTATGTCTA+TGG - chr2_2:3380667-3380686 Msa0231190:intron 40.0%
CAGTATGTGTGACAATTGTG+GGG - chr2_2:3380728-3380747 Msa0231190:intron 40.0%
CTGAGAACTACAATTGGCAA+TGG - chr2_2:3380770-3380789 Msa0231190:intron 40.0%
TTTCTTTCAGCTGCATCAAC+AGG - chr2_2:3380799-3380818 Msa0231190:intron 40.0%
! TACACTGCGATGTTTTGTCT+TGG - chr2_2:3380907-3380926 Msa0231190:intron 40.0%
AGGTATTCAGCACGTGATTA+AGG + chr2_2:3381018-3381037 None:intergenic 40.0%
! GTTCGAATTTGTTTGTGAGG+AGG - chr2_2:3381119-3381138 Msa0231190:intron 40.0%
CGCAATATCAAGTGTGACTA+AGG - chr2_2:3381148-3381167 Msa0231190:intron 40.0%
GGGACCAAGCAATGTTTATA+GGG - chr2_2:3381196-3381215 Msa0231190:intron 40.0%
GTTTATAGGGTAGTATGACG+GGG - chr2_2:3381209-3381228 Msa0231190:intron 40.0%
!! TATGACGGGGTTTTGATGAT+GGG - chr2_2:3381222-3381241 Msa0231190:intron 40.0%
!!! AACCCTGAGATTTTTTTCCC+TGG - chr2_2:3381271-3381290 Msa0231190:intron 40.0%
AGCCAGGGAAAAAAATCTCA+GGG + chr2_2:3381276-3381295 None:intergenic 40.0%
CAAAGCTTTCAATTACAGCC+AGG + chr2_2:3381292-3381311 None:intergenic 40.0%
! GATTAAACCACGAAGGTATG+TGG + chr2_2:3381531-3381550 None:intergenic 40.0%
! AAGTCCTCTTTCGCTCGTTT+TGG - chr2_2:3375519-3375538 Msa0231190:three_prime_UTR 45.0%
GAAACCAAAACGAGCGAAAG+AGG + chr2_2:3375526-3375545 None:intergenic 45.0%
TCTGAAGAACATCGTGATGG+TGG + chr2_2:3375572-3375591 None:intergenic 45.0%
ACTGACCTTGTGATCTGACT+CGG + chr2_2:3375638-3375657 None:intergenic 45.0%
ATTAGGGTTTGAGCAACCTG+GGG + chr2_2:3376051-3376070 None:intergenic 45.0%
! GTTCCGCTCGTCCTTTTATT+AGG + chr2_2:3376068-3376087 None:intergenic 45.0%
AGCGGAACTTAGCTTCCAAA+TGG - chr2_2:3376080-3376099 Msa0231190:intron 45.0%
GTTGAAAATTGCAAGGGGGT+TGG - chr2_2:3376386-3376405 Msa0231190:CDS 45.0%
AATTGTTGAAGTGGTGCGGA+TGG - chr2_2:3376466-3376485 Msa0231190:intron 45.0%
GTGCCAATGTCATGTGACAT+TGG - chr2_2:3376733-3376752 Msa0231190:CDS 45.0%
TGGCCAATGTCACATGACAT+TGG + chr2_2:3376858-3376877 None:intergenic 45.0%
GACATGTGGCATATTGTGGT+TGG + chr2_2:3376759-3376778 None:intergenic 45.0%
GAGTGACATGTGGCATATTG+TGG + chr2_2:3376763-3376782 None:intergenic 45.0%
TGGCCAATGTCACATGACAT+TGG - chr2_2:3376858-3376877 Msa0231190:CDS 45.0%
GTGCCAATGTCATGTGACAT+TGG + chr2_2:3376733-3376752 None:intergenic 45.0%
AAGAGATGCTCAGTGTTCAC+AGG + chr2_2:3377084-3377103 None:intergenic 45.0%
AGATGACCCAGTTACCCTTT+GGG - chr2_2:3377144-3377163 Msa0231190:intron 45.0%
TGTTGACCCAAAGGGTAACT+GGG + chr2_2:3377153-3377172 None:intergenic 45.0%
TTGTTGACCCAAAGGGTAAC+TGG + chr2_2:3377154-3377173 None:intergenic 45.0%
ACCCTTTGGGTCAACAAAGT+AGG - chr2_2:3377157-3377176 Msa0231190:intron 45.0%
GACCTACTTTGTTGACCCAA+AGG + chr2_2:3377162-3377181 None:intergenic 45.0%
TTGTGAGCAGTATTACCAGG+TGG + chr2_2:3377238-3377257 None:intergenic 45.0%
AATACTGCTCACAAATGGGG+CGG - chr2_2:3377244-3377263 Msa0231190:intron 45.0%
CAATAAGTTCGTTGCCACCA+AGG + chr2_2:3377282-3377301 None:intergenic 45.0%
TCTTTCCAGGGAATGTGGAA+AGG - chr2_2:3377405-3377424 Msa0231190:intron 45.0%
! TTGCCGTTTGAATCTTGACG+AGG - chr2_2:3377436-3377455 Msa0231190:intron 45.0%
CGGCATTTGACATCACTGTT+AGG + chr2_2:3378091-3378110 None:intergenic 45.0%
GCATGGCCAATTTGAGAAGA+TGG - chr2_2:3378150-3378169 Msa0231190:CDS 45.0%
TGGCCAATTTGAGAAGATGG+CGG - chr2_2:3378153-3378172 Msa0231190:CDS 45.0%
AAGCCGCCATCTTCTCAAAT+TGG + chr2_2:3378159-3378178 None:intergenic 45.0%
!! TTGAGAAGATGGCGGCTTTT+TGG - chr2_2:3378161-3378180 Msa0231190:CDS 45.0%
!! ATGTTATCAATGGCGGATGG+CGG + chr2_2:3378201-3378220 None:intergenic 45.0%
ACATGCAGAAGAAGCTCTGT+AGG + chr2_2:3378281-3378300 None:intergenic 45.0%
ACAGAGCTTCTTCTGCATGT+TGG - chr2_2:3378281-3378300 Msa0231190:intron 45.0%
CAGAGCTTCTTCTGCATGTT+GGG - chr2_2:3378282-3378301 Msa0231190:intron 45.0%
! GCGTTTTCAATACCTAGCCT+TGG - chr2_2:3378391-3378410 Msa0231190:intron 45.0%
CTTCAATTATCCCCAAGGCT+AGG + chr2_2:3378406-3378425 None:intergenic 45.0%
TCCAGATGATCTTCCGTTGT+GGG - chr2_2:3378607-3378626 Msa0231190:intron 45.0%
CCACTATCACTGTTCTTGTC+AGG + chr2_2:3378749-3378768 None:intergenic 45.0%
CCTGACAAGAACAGTGATAG+TGG - chr2_2:3378746-3378765 Msa0231190:intron 45.0%
TCATGATGACCCGAAACCTT+TGG - chr2_2:3378928-3378947 Msa0231190:intron 45.0%
TTCCTGCTTCCAAAGGTTTC+GGG + chr2_2:3378940-3378959 None:intergenic 45.0%
CTTCCTGCTTCCAAAGGTTT+CGG + chr2_2:3378941-3378960 None:intergenic 45.0%
TGCTCGGGAAGATGATGATT+TGG - chr2_2:3379275-3379294 Msa0231190:intron 45.0%
AGAGACGTCAGTGAAGAATC+TGG - chr2_2:3379472-3379491 Msa0231190:intron 45.0%
GCTCTTCTTTCAGCTGTTGT+TGG - chr2_2:3379541-3379560 Msa0231190:intron 45.0%
CTTTCAGCTGTTGTTGGTAC+GGG - chr2_2:3379547-3379566 Msa0231190:intron 45.0%
ATGTTGTGACAATGGCTCCT+CGG + chr2_2:3379858-3379877 None:intergenic 45.0%
! CTTTTCCCATTCCTGTGCTT+TGG - chr2_2:3380095-3380114 Msa0231190:intron 45.0%
CCAATTCCAAAGCACAGGAA+TGG + chr2_2:3380104-3380123 None:intergenic 45.0%
!! CCATTCCTGTGCTTTGGAAT+TGG - chr2_2:3380101-3380120 Msa0231190:intron 45.0%
AGCAATCCCCTTTGGTACAA+TGG - chr2_2:3380166-3380185 Msa0231190:intron 45.0%
AATCCCCTTTGGTACAATGG+TGG - chr2_2:3380169-3380188 Msa0231190:intron 45.0%
CAACCACCATTGTACCAAAG+GGG + chr2_2:3380175-3380194 None:intergenic 45.0%
GACAACCACCATTGTACCAA+AGG + chr2_2:3380177-3380196 None:intergenic 45.0%
TCTTTCCCTCTTGCACTTCT+TGG - chr2_2:3380218-3380237 Msa0231190:intron 45.0%
GCACAGTTGTTGGAAGAAAC+TGG - chr2_2:3380240-3380259 Msa0231190:intron 45.0%
GTTGTTGGAAGAAACTGGAG+CGG - chr2_2:3380245-3380264 Msa0231190:intron 45.0%
! GGAATGGTCTTAACACGACA+TGG + chr2_2:3380284-3380303 None:intergenic 45.0%
GTACCACTTCTTCTCAGGAA+TGG + chr2_2:3380312-3380331 None:intergenic 45.0%
ACCCTCTGTAGTTTCTCTGA+TGG - chr2_2:3380337-3380356 Msa0231190:intron 45.0%
CCCATCAGAGAAACTACAGA+GGG + chr2_2:3380341-3380360 None:intergenic 45.0%
CCCTCTGTAGTTTCTCTGAT+GGG - chr2_2:3380338-3380357 Msa0231190:intron 45.0%
ACCCATCAGAGAAACTACAG+AGG + chr2_2:3380342-3380361 None:intergenic 45.0%
TCTGTAGTTTCTCTGATGGG+TGG - chr2_2:3380341-3380360 Msa0231190:intron 45.0%
CAGCTTTCACGGGAATACAA+GGG + chr2_2:3380585-3380604 None:intergenic 45.0%
TCAGCTTTCACGGGAATACA+AGG + chr2_2:3380586-3380605 None:intergenic 45.0%
TGTCTATGGCTTCATGCTAC+TGG - chr2_2:3380681-3380700 Msa0231190:intron 45.0%
! TGCGATGTTTTGTCTTGGAC+TGG - chr2_2:3380912-3380931 Msa0231190:intron 45.0%
! GCGATGTTTTGTCTTGGACT+GGG - chr2_2:3380913-3380932 Msa0231190:intron 45.0%
TCATGTATTCGCTCTGCACA+AGG - chr2_2:3380981-3381000 Msa0231190:intron 45.0%
CATGTATTCGCTCTGCACAA+GGG - chr2_2:3380982-3381001 Msa0231190:intron 45.0%
TTCAAATGTGCAGGAGCTGT+GGG - chr2_2:3381088-3381107 Msa0231190:intron 45.0%
TAAGGCTTAGATGAAGCCTC+TGG - chr2_2:3381166-3381185 Msa0231190:intron 45.0%
GGGGACCAAGCAATGTTTAT+AGG - chr2_2:3381195-3381214 Msa0231190:intron 45.0%
!! GTATGACGGGGTTTTGATGA+TGG - chr2_2:3381221-3381240 Msa0231190:intron 45.0%
CAGCCAGGGAAAAAAATCTC+AGG + chr2_2:3381277-3381296 None:intergenic 45.0%
CAGACATCAGTTCGTCAATC+TGG + chr2_2:3381421-3381440 None:intergenic 45.0%
!! TGTGGAGGAAGTACTCAGAA+CGG + chr2_2:3381513-3381532 None:intergenic 45.0%
! TAAACCACGAAGGTATGTGG+AGG + chr2_2:3381528-3381547 None:intergenic 45.0%
TTAGGGTTTGAGCAACCTGG+GGG + chr2_2:3376050-3376069 None:intergenic 50.0%
!! CTAGGGTTTTAGTGGTGTGC+CGG - chr2_2:3376274-3376293 Msa0231190:CDS 50.0%
!! TAGGGTTTTAGTGGTGTGCC+GGG - chr2_2:3376275-3376294 Msa0231190:CDS 50.0%
CAATATCAGCCATTGCCTCC+CGG + chr2_2:3376296-3376315 None:intergenic 50.0%
ACAACACTTGGGTGACATGG+TGG + chr2_2:3376886-3376905 None:intergenic 50.0%
CAAAGGGTAACTGGGTCATC+TGG + chr2_2:3377145-3377164 None:intergenic 50.0%
CAGATGACCCAGTTACCCTT+TGG - chr2_2:3377143-3377162 Msa0231190:intron 50.0%
TTACCAGGTGGACGGCAAAA+TGG + chr2_2:3377226-3377245 None:intergenic 50.0%
GAGCAGTATTACCAGGTGGA+CGG + chr2_2:3377234-3377253 None:intergenic 50.0%
CAAGAAGATGCCATTGCAGG+AGG - chr2_2:3377933-3377952 Msa0231190:intron 50.0%
GAAGAAGCTCTGTAGGACCT+GGG + chr2_2:3378274-3378293 None:intergenic 50.0%
AGAAGAAGCTCTGTAGGACC+TGG + chr2_2:3378275-3378294 None:intergenic 50.0%
TCTTCTGCATGTTGGGTCCA+TGG - chr2_2:3378289-3378308 Msa0231190:intron 50.0%
! GGCACTGTTTCTTTCCTTGC+TGG - chr2_2:3378549-3378568 Msa0231190:intron 50.0%
GTCCAGATGATCTTCCGTTG+TGG - chr2_2:3378606-3378625 Msa0231190:intron 50.0%
CCAGATGATCTTCCGTTGTG+GGG - chr2_2:3378608-3378627 Msa0231190:intron 50.0%
GTGATAGGCATACCCCACAA+CGG + chr2_2:3378623-3378642 None:intergenic 50.0%
ACGTCAGTGAAGAATCTGGC+TGG - chr2_2:3379476-3379495 Msa0231190:intron 50.0%
TCTGGCTGGAAACTTGTGCA+TGG - chr2_2:3379490-3379509 Msa0231190:intron 50.0%
GAAAGAAGAGCCAAACTGCG+AGG + chr2_2:3379532-3379551 None:intergenic 50.0%
GCTCCTCGGCTGCATATTAA+AGG + chr2_2:3379844-3379863 None:intergenic 50.0%
GCTCTCACGTCAGTCATTTC+TGG - chr2_2:3379892-3379911 Msa0231190:CDS 50.0%
GGGGGATGTACTCACGTAAT+GGG - chr2_2:3379926-3379945 Msa0231190:CDS 50.0%
GGGGATGTACTCACGTAATG+GGG - chr2_2:3379927-3379946 Msa0231190:CDS 50.0%
GGGATGTACTCACGTAATGG+GGG - chr2_2:3379928-3379947 Msa0231190:CDS 50.0%
! GTACTCACGTAATGGGGGTA+AGG - chr2_2:3379933-3379952 Msa0231190:CDS 50.0%
TCTCTAGCAGCAATCCCCTT+TGG - chr2_2:3380158-3380177 Msa0231190:intron 50.0%
! CTGTGCCAAGAAGTGCAAGA+GGG + chr2_2:3380226-3380245 None:intergenic 50.0%
! ACTGTGCCAAGAAGTGCAAG+AGG + chr2_2:3380227-3380246 None:intergenic 50.0%
GCACTTCTTGGCACAGTTGT+TGG - chr2_2:3380230-3380249 Msa0231190:intron 50.0%
TTCTTCTCAGGAATGGGACG+AGG + chr2_2:3380305-3380324 None:intergenic 50.0%
GTCCCATTCCTGAGAAGAAG+TGG - chr2_2:3380306-3380325 Msa0231190:intron 50.0%
! GTGAGGTACCACTTCTTCTC+AGG + chr2_2:3380317-3380336 None:intergenic 50.0%
! GAGAAACTACAGAGGGTGTG+AGG + chr2_2:3380334-3380353 None:intergenic 50.0%
TACACCTGTTGGCCACAAAG+TGG + chr2_2:3380658-3380677 None:intergenic 50.0%
! CTTGGACTGGGAATTCTCTG+TGG - chr2_2:3380925-3380944 Msa0231190:intron 50.0%
TTCGCTCTGCACAAGGGAAA+TGG - chr2_2:3380988-3381007 Msa0231190:intron 50.0%
TCGCTCTGCACAAGGGAAAT+GGG - chr2_2:3380989-3381008 Msa0231190:intron 50.0%
CTTCAAATGTGCAGGAGCTG+TGG - chr2_2:3381087-3381106 Msa0231190:intron 50.0%
AGATGAAGCCTCTGGTCATG+TGG - chr2_2:3381174-3381193 Msa0231190:intron 50.0%
GATGAAGCCTCTGGTCATGT+GGG - chr2_2:3381175-3381194 Msa0231190:intron 50.0%
ATGAAGCCTCTGGTCATGTG+GGG - chr2_2:3381176-3381195 Msa0231190:intron 50.0%
ACGTAGAGGGGATGAAGTCT+CGG - chr2_2:3381467-3381486 Msa0231190:CDS 50.0%
ACTTCCTCCACATACCTTCG+TGG - chr2_2:3381521-3381540 Msa0231190:exon 50.0%
!! GTGATCTGACTCGGAAGCGA+AGG + chr2_2:3375629-3375648 None:intergenic 55.0%
CGCTTCCGAGTCAGATCACA+AGG - chr2_2:3375630-3375649 Msa0231190:three_prime_UTR 55.0%
! GGGGGCATATCGAGCAACAT+TGG + chr2_2:3376032-3376051 None:intergenic 55.0%
ATGTTGCTCGATATGCCCCC+AGG - chr2_2:3376032-3376051 Msa0231190:intron 55.0%
GTGGTGCGGATGGTGACATA+TGG - chr2_2:3376476-3376495 Msa0231190:intron 55.0%
GGGACAACACTTGGGTGACA+TGG + chr2_2:3376889-3376908 None:intergenic 55.0%
GGGTAACTGGGTCATCTGGT+TGG + chr2_2:3377141-3377160 None:intergenic 55.0%
GTGGTCCTTTCCACATTCCC+TGG + chr2_2:3377413-3377432 None:intergenic 55.0%
! ACACTGTTGGCCTCCTGCAA+TGG + chr2_2:3377946-3377965 None:intergenic 55.0%
GTGATGTCAAATGCCGGCCA+TGG - chr2_2:3378095-3378114 Msa0231190:CDS 55.0%
ATGTCAAATGCCGGCCATGG+TGG - chr2_2:3378098-3378117 Msa0231190:CDS 55.0%
TCCACCACCACAATCCACCA+TGG + chr2_2:3378115-3378134 None:intergenic 55.0%
CCCCACAACGGAAGATCATC+TGG + chr2_2:3378611-3378630 None:intergenic 55.0%
AGAGAGGCAGAGACGGTGAT+AGG + chr2_2:3378638-3378657 None:intergenic 55.0%
TGGACAGAGAGAGGCAGAGA+CGG + chr2_2:3378645-3378664 None:intergenic 55.0%
! GACCCGAAACCTTTGGAAGC+AGG - chr2_2:3378935-3378954 Msa0231190:intron 55.0%
! TTTTCGGCCTCCTCGCAGTT+TGG - chr2_2:3379519-3379538 Msa0231190:intron 55.0%
AGAAGAGCCAAACTGCGAGG+AGG + chr2_2:3379529-3379548 None:intergenic 55.0%
GGGGGGATGTACTCACGTAA+TGG - chr2_2:3379925-3379944 Msa0231190:CDS 55.0%
CTCAGGAATGGGACGAGGAA+TGG + chr2_2:3380300-3380319 None:intergenic 55.0%
!! ATGGGTGGACTGCTTCCCTT+TGG - chr2_2:3380356-3380375 Msa0231190:intron 55.0%
CCTGTTGGCCACAAAGTGGA+AGG + chr2_2:3380654-3380673 None:intergenic 55.0%
CCTTCCACTTTGTGGCCAAC+AGG - chr2_2:3380651-3380670 Msa0231190:intron 55.0%
GAGAGAGGAGGAGAAGGAGG+AGG + chr2_2:3375603-3375622 None:intergenic 60.0%
CCTCCTTCTCCTCCTCTCTC+CGG - chr2_2:3375603-3375622 Msa0231190:three_prime_UTR 60.0%
!! TCTGACTCGGAAGCGAAGGC+CGG + chr2_2:3375625-3375644 None:intergenic 60.0%
!! GGTTTTAGTGGTGTGCCGGG+AGG - chr2_2:3376278-3376297 Msa0231190:CDS 60.0%
CAGGTGGACGGCAAAATGGC+AGG + chr2_2:3377222-3377241 None:intergenic 60.0%
!!! CTGCCATTTTGCCGTCCACC+TGG - chr2_2:3377220-3377239 Msa0231190:CDS 60.0%
GCTCACAAATGGGGCGGTCT+AGG - chr2_2:3377250-3377269 Msa0231190:intron 60.0%
CAAATGGGGCGGTCTAGGTG+AGG - chr2_2:3377255-3377274 Msa0231190:intron 60.0%
GGTCTAGGTGAGGTCCTTGG+TGG - chr2_2:3377265-3377284 Msa0231190:intron 60.0%
!! ATGCCGGCCATGGTGGATTG+TGG - chr2_2:3378105-3378124 Msa0231190:CDS 60.0%
CCACCACAATCCACCATGGC+CGG + chr2_2:3378111-3378130 None:intergenic 60.0%
!! GCCATGGTGGATTGTGGTGG+TGG - chr2_2:3378111-3378130 Msa0231190:CDS 60.0%
!! CAATGGCGGATGGCGGACAA+AGG + chr2_2:3378194-3378213 None:intergenic 60.0%
GCAGGAGCTGTGGGTCATCT+TGG - chr2_2:3381097-3381116 Msa0231190:intron 60.0%
CTTGGTCCCCACATGACCAG+AGG + chr2_2:3381185-3381204 None:intergenic 60.0%
CCGGAGAGAGGAGGAGAAGG+AGG + chr2_2:3375606-3375625 None:intergenic 65.0%
AGGCCGGAGAGAGGAGGAGA+AGG + chr2_2:3375609-3375628 None:intergenic 65.0%
AAGCGAAGGCCGGAGAGAGG+AGG + chr2_2:3375615-3375634 None:intergenic 65.0%
AGTGGTGTGCCGGGAGGCAA+TGG - chr2_2:3376284-3376303 Msa0231190:CDS 65.0%
GGCGGTCTAGGTGAGGTCCT+TGG - chr2_2:3377262-3377281 Msa0231190:intron 65.0%
!! CCGGCCATGGTGGATTGTGG+TGG - chr2_2:3378108-3378127 Msa0231190:CDS 65.0%
!! TGGCGGATGGCGGACAAAGG+TGG + chr2_2:3378191-3378210 None:intergenic 65.0%
CGGAAGCGAAGGCCGGAGAG+AGG + chr2_2:3375618-3375637 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3375432 3381684 3375432 ID=Msa0231190;Name=Msa0231190
chr2_2 mRNA 3375432 3381684 3375432 ID=Msa0231190-mRNA-1;Parent=Msa0231190;Name=Msa0231190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=148|0.9|1|1|1|1|11|516|577
chr2_2 exon 3375432 3376015 3375432 ID=Msa0231190-mRNA-1:exon:1302;Parent=Msa0231190-mRNA-1
chr2_2 exon 3376170 3376443 3376170 ID=Msa0231190-mRNA-1:exon:1301;Parent=Msa0231190-mRNA-1
chr2_2 exon 3376686 3377059 3376686 ID=Msa0231190-mRNA-1:exon:1300;Parent=Msa0231190-mRNA-1
chr2_2 exon 3377167 3377261 3377167 ID=Msa0231190-mRNA-1:exon:1299;Parent=Msa0231190-mRNA-1
chr2_2 exon 3377481 3377647 3377481 ID=Msa0231190-mRNA-1:exon:1298;Parent=Msa0231190-mRNA-1
chr2_2 exon 3377811 3377945 3377811 ID=Msa0231190-mRNA-1:exon:1297;Parent=Msa0231190-mRNA-1
chr2_2 exon 3378056 3378208 3378056 ID=Msa0231190-mRNA-1:exon:1296;Parent=Msa0231190-mRNA-1
chr2_2 exon 3378293 3378390 3378293 ID=Msa0231190-mRNA-1:exon:1295;Parent=Msa0231190-mRNA-1
chr2_2 exon 3379598 3379702 3379598 ID=Msa0231190-mRNA-1:exon:1294;Parent=Msa0231190-mRNA-1
chr2_2 exon 3379788 3379980 3379788 ID=Msa0231190-mRNA-1:exon:1293;Parent=Msa0231190-mRNA-1
chr2_2 exon 3381465 3381684 3381465 ID=Msa0231190-mRNA-1:exon:1292;Parent=Msa0231190-mRNA-1
chr2_2 five_prime_UTR 3381537 3381684 3381537 ID=Msa0231190-mRNA-1:five_prime_utr;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3381465 3381536 3381465 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3379788 3379980 3379788 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3379598 3379702 3379598 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3378293 3378390 3378293 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3378056 3378208 3378056 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3377811 3377945 3377811 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3377481 3377647 3377481 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3377167 3377261 3377167 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3376686 3377059 3376686 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3376170 3376443 3376170 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 CDS 3375948 3376015 3375948 ID=Msa0231190-mRNA-1:cds;Parent=Msa0231190-mRNA-1
chr2_2 three_prime_UTR 3375432 3375947 3375432 ID=Msa0231190-mRNA-1:three_prime_utr;Parent=Msa0231190-mRNA-1
Gene Sequence

>Msa0231190

ATGTTCTTCAGATTCTCGCTCCTCCTCCTTCTCCTCCTCTCTCCGGCCTTCGCTTCCGAGTCAGATCACAAGTACCAACCAGATGACCCAGTTACCCTTTGGGTCAACAAAGTAGGTCCGTACAATAATCCTCAAGAAACATATAATTATTACAGCCTGCCATTTTGCCGTCCACCTGGTAATACTGCTCACAAATGGGGCGGTCTAGGTGAGGTCCTTGGTGGCAACGAACTTATTGATAGCCAAATTGAGATAAAGTTTCTAGGGAATGTGGAAAGGACCACTTTTTGCCGTTTGAATCTTGACGAGGCAAAGGTTAAACAGTTCAAGGATGCAATTGAAAATAATTACTGGTTTGAATTCTTCATGGGGTATGTTGGGGAGCTACATCCTGACAAGAACAGTGATAGTGGCAAGCATGTCCTTTACACACACAAGAACATCATTGTTAAGTACAATACAGATCAGATCATTCATGTGAATCTCACTCATGATGACCCGAAACCTTTGGAAGCAGGAAGATCTTTGGACATGACATATTCTGTTAAATGGATTGCCACTAATGTCACTTTTAGACACCGGTTTGATGTATATCTGGACTATCCATTCTTTGAGCATCAGATTCATTGGTTCTCTATTTTTAACTCTTTTATGATGGTCATATTCCTAACTGGATTGGTGTCTATGATATTGATGCGAACTTTGAGAAATGACTATGCAAAGTATGCTCGGGAAGATGATGATTTGGAAACTCTGGAAAGAGACGTCAGTGAAGAATCTGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCTGTTGTTGGTACGGGTGCTCAGCTTGCGTTGTTGATTCTTCTTGTCATCTTGTTAGCTATTGTTGGGATGTTGTATGTTGACCGAGGAGCCATTGTCACAACATTCATTGTTTGTTATGCTCTCACGTCAGTCATTTCTGGTTATGTAAGTGGGGGGATGTACTCACGTAATGGGGGTAAAAGTTGGATTAAATCCATGATCCTTACAGCATCACTTTTCCCATTCCTGTGCTTTGGAATTGGATTCATCTTAAACACCGTGGCTATATTTTATGGATCTCTAGCAGCAATCCCCTTTGGTACAATGGTGGTTGTCTTTGTTATTTGGGCTTTCATCTCTTTCCCTCTTGCACTTCTTGGCACAGTTGTTGGAAGAAACTGGAGCGGTGCTCCAAATAATCCATGTCGTGTTAAGACCATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCTGTAGTTTCTCTGATGGGTGGACTGCTTCCCTTTGGCAGCATATTCATTGAGATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTCTATGGCTTCATGCTACTGGTTTTTCTGATTCTCATTGTTGTTACAGTATGTGTGACAATTGTGGGGACATACTTTTTGTTAAATGCTGAGAACTACAATTGGCAATGGACTTCTTTTCTTTCAGCTGCATCAACAGGTGTTTATGTATATTTGTACTCGATATACTACTACTATGTGAAGACAAAGATGTCAGGCTTCTTCCAAACTAGCTTCTATTTTGGATACACTGCGATGTTTTGTCTTGGACTGGGAATTCTCTGTGGAGCTGTGGGTCATCTTGGTTCGAATTTGTTTGTGAGGAGGATCTACCGCAATATCAAGTGTGACTAA
Protein sequence

>Msa0231190

MFFRFSLLLLLLLSPAFASESDHKYQPDDPVTLWVNKVGPYNNPQETYNYYSLPFCRPPGNTAHKWGGLGEVLGGNELIDSQIEIKFLGNVERTTFCRLNLDEAKVKQFKDAIENNYWFEFFMGYVGELHPDKNSDSGKHVLYTHKNIIVKYNTDQIIHVNLTHDDPKPLEAGRSLDMTYSVKWIATNVTFRHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRSLALLSAVVGTGAQLALLILLVILLAIVGMLYVDRGAIVTTFIVCYALTSVISGYVSGGMYSRNGGKSWIKSMILTASLFPFLCFGIGFILNTVAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILIVVTVCVTIVGTYFLLNAENYNWQWTSFLSAASTGVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTAMFCLGLGILCGAVGHLGSNLFVRRIYRNIKCD*