Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293030 | XP_013464449.1 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 1.55e-161 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293030 | sp|Q9C8L2|FAP3_ARATH | 57.965 | 226 | 81 | 2 | 54 | 265 | 61 | 286 | 9.64e-86 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293030 | A0A072V8X6 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 7.41e-162 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035050 | Msa0293030 | 0.811337 | 7.363907e-51 | -8.615850e-47 |
| Msa0081440 | Msa0293030 | 0.811154 | 8.067262e-51 | -8.615850e-47 |
| Msa0293030 | Msa0326630 | 0.822667 | 2.095535e-53 | -8.615850e-47 |
| Msa0293030 | Msa0327990 | 0.808925 | 2.437638e-50 | -8.615850e-47 |
| Msa0293030 | Msa0367540 | 0.824284 | 8.772851e-54 | -8.615850e-47 |
| Msa0293030 | Msa0383870 | 0.822238 | 2.636803e-53 | -8.615850e-47 |
| Msa0293030 | Msa0415160 | 0.835191 | 1.937160e-56 | -8.615850e-47 |
| Msa0293030 | Msa0460170 | 0.820712 | 5.933032e-53 | -8.615850e-47 |
| Msa0293030 | Msa0484560 | 0.971665 | 1.601848e-133 | -8.615850e-47 |
| Msa0293030 | Msa0569580 | 0.802091 | 6.612364e-49 | -8.615850e-47 |
| Msa0293030 | Msa0576020 | 0.803722 | 3.043536e-49 | -8.615850e-47 |
| Msa0293030 | Msa0576090 | 0.800814 | 1.207884e-48 | -8.615850e-47 |
| Msa0293030 | Msa1129300 | 0.804514 | 2.082368e-49 | -8.615850e-47 |
| Msa0293030 | Msa1190510 | 0.808302 | 3.311639e-50 | -8.615850e-47 |
| Msa0293030 | Msa1375970 | 0.806445 | 8.197309e-50 | -8.615850e-47 |
| Msa0293030 | Msa1411930 | 0.805934 | 1.050375e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293030 | MtrunA17_Chr2g0313901 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 1.43e-165 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293030 | AT1G53520.1 | 57.965 | 226 | 81 | 2 | 54 | 265 | 61 | 286 | 9.80e-87 | 260 |
Find 58 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGATGGTAAAACTTTC+TGG | 0.189488 | 2_3:-42942429 | Msa0293030:CDS |
| AGAAAAGCTTACAAGCAATT+TGG | 0.250679 | 2_3:+42942264 | None:intergenic |
| AAAGAGGGAACATAGTTTAA+TGG | 0.283024 | 2_3:+42945221 | None:intergenic |
| AAATGAAAGTTCCTTTCTTA+AGG | 0.288163 | 2_3:+42942308 | None:intergenic |
| GAAATTGTTACATTGGAAAA+TGG | 0.299638 | 2_3:+42942753 | None:intergenic |
| GGCGTCAAGGTCTATGCTTC+TGG | 0.323231 | 2_3:-42942868 | Msa0293030:CDS |
| TCAGACTCATTAACATTGTT+TGG | 0.328011 | 2_3:-42943581 | Msa0293030:CDS |
| TCAGACATCTTTGAGTTTCC+CGG | 0.335505 | 2_3:-42943609 | Msa0293030:CDS |
| AATGAAAGTTCCTTTCTTAA+GGG | 0.338163 | 2_3:+42942309 | None:intergenic |
| TGAAATTTCACATTTGTTGC+TGG | 0.346422 | 2_3:+42943629 | None:intergenic |
| TGGTGATATGGCATCACTTA+AGG | 0.366207 | 2_3:+42942402 | None:intergenic |
| TTGAGCCACTGAAGCTTTCA+AGG | 0.383492 | 2_3:+42941984 | None:intergenic |
| GCTTTCAAGGAGGGAGAAAC+AGG | 0.388227 | 2_3:+42941997 | None:intergenic |
| AAGCAGCTTGTGGAAGGAAA+TGG | 0.391258 | 2_3:+42945138 | None:intergenic |
| TCATTAACATTGTTTGGAAC+TGG | 0.398099 | 2_3:-42943575 | Msa0293030:intron |
| AGCAGCTTGTGGAAGGAAAT+GGG | 0.432559 | 2_3:+42945139 | None:intergenic |
| CAGGTTTCTGTCTCGTCAGA+GGG | 0.437885 | 2_3:-42942099 | Msa0293030:CDS |
| TCATCTTCATCTTCATCTGC+TGG | 0.442683 | 2_3:-42945116 | Msa0293030:intron |
| GCAGTTTCATCTGCAGTTGT+TGG | 0.451903 | 2_3:+42942367 | None:intergenic |
| ACTCTTGTAAGAGATGTTGA+TGG | 0.451968 | 2_3:-42942442 | Msa0293030:intron |
| ATGAAAGTTCCTTTCTTAAG+GGG | 0.452657 | 2_3:+42942310 | None:intergenic |
| TTGAGAGAGAAATGCAGAGA+GGG | 0.456436 | 2_3:+42945182 | None:intergenic |
| TCCCTCCTTGAAAGCTTCAG+TGG | 0.496514 | 2_3:-42941989 | Msa0293030:CDS |
| TCAACTCATTTACGATAGAC+TGG | 0.499366 | 2_3:+42942833 | None:intergenic |
| AGAGAGAAATGCAGAGAGGG+GGG | 0.500233 | 2_3:+42945185 | None:intergenic |
| CAGTCGAAAGATGTTATTCA+AGG | 0.515053 | 2_3:-42942796 | Msa0293030:CDS |
| GCCACTGAAGCTTTCAAGGA+GGG | 0.518744 | 2_3:+42941988 | None:intergenic |
| CAGACATCTTTGAGTTTCCC+GGG | 0.519909 | 2_3:-42943608 | Msa0293030:CDS |
| GGGTGTGAATAGTGAGAAAG+AGG | 0.523811 | 2_3:+42945205 | None:intergenic |
| TGTTGATGGTAAAACTTTCT+GGG | 0.525779 | 2_3:-42942428 | Msa0293030:CDS |
| GAGAGAGAAATGCAGAGAGG+GGG | 0.528252 | 2_3:+42945184 | None:intergenic |
| TCAGGTTTCTGTCTCGTCAG+AGG | 0.541897 | 2_3:-42942100 | Msa0293030:intron |
| AAAGCTTACAAGCAATTTGG+AGG | 0.544044 | 2_3:+42942267 | None:intergenic |
| ATCGTGGCATCTGCGGTGGA+TGG | 0.548221 | 2_3:+42942072 | None:intergenic |
| TTCAATCGTGGCATCTGCGG+TGG | 0.552672 | 2_3:+42942068 | None:intergenic |
| TCGTAAATGAGTTGAATGCT+TGG | 0.553867 | 2_3:-42942825 | Msa0293030:CDS |
| AGCTTACAAGCAATTTGGAG+GGG | 0.555652 | 2_3:+42942269 | None:intergenic |
| TGAGAGAGAAATGCAGAGAG+GGG | 0.557502 | 2_3:+42945183 | None:intergenic |
| GTTAATGAGTCTGAGCAACC+CGG | 0.566583 | 2_3:+42943590 | None:intergenic |
| ATGAGTTGAATGCTTGGAAA+GGG | 0.574681 | 2_3:-42942819 | Msa0293030:CDS |
| AAGATGAAGCAGCTTGTGGA+AGG | 0.576752 | 2_3:+42945132 | None:intergenic |
| AAGCTTACAAGCAATTTGGA+GGG | 0.578278 | 2_3:+42942268 | None:intergenic |
| TTGGAAAATGGTCTTGAACA+AGG | 0.586433 | 2_3:+42942765 | None:intergenic |
| TGAAAGTTCCTTTCTTAAGG+GGG | 0.594314 | 2_3:+42942311 | None:intergenic |
| AATGAGTTGAATGCTTGGAA+AGG | 0.600633 | 2_3:-42942820 | Msa0293030:CDS |
| GGCGATCTTGAAAGACGCTA+CGG | 0.603802 | 2_3:+42942332 | None:intergenic |
| GATGAAGATGAAGCAGCTTG+TGG | 0.611762 | 2_3:+42945128 | None:intergenic |
| GCAGCTTGTGGAAGGAAATG+GGG | 0.619730 | 2_3:+42945140 | None:intergenic |
| CACATTTGCAGATTCAATCG+TGG | 0.621754 | 2_3:+42942056 | None:intergenic |
| GTTGAGAGAGAAATGCAGAG+AGG | 0.624225 | 2_3:+42945181 | None:intergenic |
| CAGCTTGTGGAAGGAAATGG+GGG | 0.640930 | 2_3:+42945141 | None:intergenic |
| GGCAAATGCTGAATACATTG+AGG | 0.643782 | 2_3:-42943654 | Msa0293030:CDS |
| AGTCGAAAGATGTTATTCAA+GGG | 0.643960 | 2_3:-42942795 | Msa0293030:CDS |
| AGATTCAATCGTGGCATCTG+CGG | 0.655352 | 2_3:+42942065 | None:intergenic |
| TTAATGAGTCTGAGCAACCC+GGG | 0.664480 | 2_3:+42943591 | None:intergenic |
| AGCCACTGAAGCTTTCAAGG+AGG | 0.667896 | 2_3:+42941987 | None:intergenic |
| AGGTTTCTGTCTCGTCAGAG+GGG | 0.677404 | 2_3:-42942098 | Msa0293030:CDS |
| GGTGTGAATAGTGAGAAAGA+GGG | 0.686116 | 2_3:+42945206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTAAAAAGAAATAAA+TGG | + | chr2_3:42944539-42944558 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAATATCTTAAA+TGG | + | chr2_3:42945047-42945066 | None:intergenic | 10.0% |
| !! | TGAATGCATAAAATAATATA+TGG | - | chr2_3:42942559-42942578 | Msa0293030:intron | 15.0% |
| !! | GAATGCATAAAATAATATAT+GGG | - | chr2_3:42942560-42942579 | Msa0293030:intron | 15.0% |
| !!! | TGCATTTTTTTTTACTTTTT+TGG | - | chr2_3:42942651-42942670 | Msa0293030:intron | 15.0% |
| !!! | ATAATATAATTTTATCCTAC+CGG | + | chr2_3:42943279-42943298 | None:intergenic | 15.0% |
| !! | AAATATCTAATTCTACAAAA+TGG | + | chr2_3:42944133-42944152 | None:intergenic | 15.0% |
| !! | TGAAAACATTATGTTTATAA+TGG | - | chr2_3:42944207-42944226 | Msa0293030:intron | 15.0% |
| !!! | TTTTTATTTTTTGTGATTTC+AGG | - | chr2_3:42945144-42945163 | Msa0293030:CDS | 15.0% |
| !! | ATTCATTTAATAATGCAGAA+TGG | - | chr2_3:42942218-42942237 | Msa0293030:intron | 20.0% |
| !! | AAAATAAGAGATTTCTTCAA+TGG | - | chr2_3:42942913-42942932 | Msa0293030:intron | 20.0% |
| !!! | GAAAAAGTTTTTGCTATTAT+TGG | - | chr2_3:42944373-42944392 | Msa0293030:intron | 20.0% |
| !! | AATTTGCAATAATTTCTCAA+GGG | + | chr2_3:42944800-42944819 | None:intergenic | 20.0% |
| !!! | TAATTTGCAATAATTTCTCA+AGG | + | chr2_3:42944801-42944820 | None:intergenic | 20.0% |
| !! | TAAACTTTTGCAGATTGAAT+TGG | - | chr2_3:42942380-42942399 | Msa0293030:CDS | 25.0% |
| !!! | AAAATATTCGCCTTTTTTGA+AGG | - | chr2_3:42942455-42942474 | Msa0293030:intron | 25.0% |
| !! | CACTTTCTCTTTTTCTTTTT+TGG | + | chr2_3:42942481-42942500 | None:intergenic | 25.0% |
| ! | ATTATTGCAAATCCAACTAA+TGG | + | chr2_3:42942596-42942615 | None:intergenic | 25.0% |
| ! | ATTAGTTGGATTTGCAATAA+TGG | - | chr2_3:42942595-42942614 | Msa0293030:intron | 25.0% |
| ! | ACAAGTAATATATCTGAACA+AGG | - | chr2_3:42942618-42942637 | Msa0293030:intron | 25.0% |
| ! | AATATATCTGAACAAGGTTA+AGG | - | chr2_3:42942624-42942643 | Msa0293030:intron | 25.0% |
| ! | TGAAGGGCTAAATATATTTA+TGG | + | chr2_3:42942802-42942821 | None:intergenic | 25.0% |
| ! | TAGCAAATAGTTGTAAAGAT+TGG | - | chr2_3:42942881-42942900 | Msa0293030:CDS | 25.0% |
| ! | AGCAAATAGTTGTAAAGATT+GGG | - | chr2_3:42942882-42942901 | Msa0293030:CDS | 25.0% |
| ! | GACAAATATTGACATCTATT+TGG | - | chr2_3:42943563-42943582 | Msa0293030:intron | 25.0% |
| !! | TAACATGACAACATTTTACA+TGG | - | chr2_3:42943757-42943776 | Msa0293030:intron | 25.0% |
| !! | ATATCTTTTCTCTTAGAACT+TGG | + | chr2_3:42943793-42943812 | None:intergenic | 25.0% |
| ! | GGAAAAAGAATGTTGAAAAA+TGG | - | chr2_3:42944057-42944076 | Msa0293030:intron | 25.0% |
| !! | AATGGATTCATACATATCTA+AGG | - | chr2_3:42944075-42944094 | Msa0293030:intron | 25.0% |
| !! | TTGATAATAACACCTATTTC+AGG | - | chr2_3:42944343-42944362 | Msa0293030:intron | 25.0% |
| ! | GAAATTGTTACATTGGAAAA+TGG | + | chr2_3:42944512-42944531 | None:intergenic | 25.0% |
| ! | TGGATATGAAATTGTTACAT+TGG | + | chr2_3:42944519-42944538 | None:intergenic | 25.0% |
| ! | ATTTGCAATAATTTCTCAAG+GGG | + | chr2_3:42944799-42944818 | None:intergenic | 25.0% |
| ! | AATGAAAGTTCCTTTCTTAA+GGG | + | chr2_3:42944956-42944975 | None:intergenic | 25.0% |
| ! | AAATGAAAGTTCCTTTCTTA+AGG | + | chr2_3:42944957-42944976 | None:intergenic | 25.0% |
| !!! | GAACTTTCATTTTTTTGACT+TGG | - | chr2_3:42944965-42944984 | Msa0293030:intron | 25.0% |
| GTAGAAGATGAAAAACATAG+TGG | + | chr2_3:42941990-42942009 | None:intergenic | 30.0% | |
| AAAGAGGGAACATAGTTTAA+TGG | + | chr2_3:42942044-42942063 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTGGCCTTCAAAAA+AGG | + | chr2_3:42942468-42942487 | None:intergenic | 30.0% |
| AGTGAAAAGTTTGAAGATTC+TGG | - | chr2_3:42942497-42942516 | Msa0293030:intron | 30.0% | |
| !! | CAATGAGGTAGTATTTTGAA+GGG | + | chr2_3:42942818-42942837 | None:intergenic | 30.0% |
| !! | ACAATGAGGTAGTATTTTGA+AGG | + | chr2_3:42942819-42942838 | None:intergenic | 30.0% |
| TAACACAAGTAGAAAAAGTG+AGG | - | chr2_3:42942982-42943001 | Msa0293030:intron | 30.0% | |
| TATATGATTGAATACTGCAG+CGG | - | chr2_3:42943587-42943606 | Msa0293030:CDS | 30.0% | |
| ! | TGAAATTTCACATTTGTTGC+TGG | + | chr2_3:42943636-42943655 | None:intergenic | 30.0% |
| TCAGACTCATTAACATTGTT+TGG | - | chr2_3:42943681-42943700 | Msa0293030:intron | 30.0% | |
| ! | TCATTAACATTGTTTGGAAC+TGG | - | chr2_3:42943687-42943706 | Msa0293030:intron | 30.0% |
| TATAATGTCGCAATTTCATG+CGG | - | chr2_3:42943812-42943831 | Msa0293030:intron | 30.0% | |
| TCATAACCTTGTCTCTAAAT+TGG | - | chr2_3:42943872-42943891 | Msa0293030:intron | 30.0% | |
| TATCAACCAATTTAGAGACA+AGG | + | chr2_3:42943881-42943900 | None:intergenic | 30.0% | |
| ! | ATTCACAGCAAGATTTTGAA+AGG | + | chr2_3:42943957-42943976 | None:intergenic | 30.0% |
| GAAAGATACAGCTTATTATC+AGG | + | chr2_3:42944008-42944027 | None:intergenic | 30.0% | |
| CTGTATCTTTCAGTAACTAT+AGG | - | chr2_3:42944017-42944036 | Msa0293030:intron | 30.0% | |
| ATAGGCAAAGTGATTCTATT+TGG | - | chr2_3:42944035-42944054 | Msa0293030:intron | 30.0% | |
| TAGGCAAAGTGATTCTATTT+GGG | - | chr2_3:42944036-42944055 | Msa0293030:intron | 30.0% | |
| ! | ATATCTAAGGTTAAACTTCG+AGG | - | chr2_3:42944088-42944107 | Msa0293030:intron | 30.0% |
| GCAAAAAAAATCCAAAGGTT+CGG | + | chr2_3:42944242-42944261 | None:intergenic | 30.0% | |
| TACTAGACGGAAATAATTAC+GGG | + | chr2_3:42944264-42944283 | None:intergenic | 30.0% | |
| CTACTAGACGGAAATAATTA+CGG | + | chr2_3:42944265-42944284 | None:intergenic | 30.0% | |
| ACCTACTAAATTCTACTAGA+CGG | + | chr2_3:42944277-42944296 | None:intergenic | 30.0% | |
| ! | TTTTCTCTGTATCCTGAAAT+AGG | + | chr2_3:42944358-42944377 | None:intergenic | 30.0% |
| AGTCGAAAGATGTTATTCAA+GGG | - | chr2_3:42944467-42944486 | Msa0293030:intron | 30.0% | |
| ACAACACTTTGCACTAAATT+TGG | - | chr2_3:42944650-42944669 | Msa0293030:intron | 30.0% | |
| TTGCACTAAATTTGGTATCA+CGG | - | chr2_3:42944658-42944677 | Msa0293030:intron | 30.0% | |
| AATCAGTGTTGTCAAATAAC+CGG | + | chr2_3:42944732-42944751 | None:intergenic | 30.0% | |
| !! | ATGTTGATGGTAAAACTTTC+TGG | - | chr2_3:42944833-42944852 | Msa0293030:intron | 30.0% |
| !! | TGTTGATGGTAAAACTTTCT+GGG | - | chr2_3:42944834-42944853 | Msa0293030:intron | 30.0% |
| !! | TTTTGCAATTCTTGGTGATA+TGG | + | chr2_3:42944875-42944894 | None:intergenic | 30.0% |
| ATGAAAGTTCCTTTCTTAAG+GGG | + | chr2_3:42944955-42944974 | None:intergenic | 30.0% | |
| AGAAAAGCTTACAAGCAATT+TGG | + | chr2_3:42945001-42945020 | None:intergenic | 30.0% | |
| ! | GCTCTTTTTGATGTATTTCT+TGG | - | chr2_3:42945235-42945254 | Msa0293030:CDS | 30.0% |
| ! | ACTTTTGCAGATTGAATTGG+AGG | - | chr2_3:42942383-42942402 | Msa0293030:CDS | 35.0% |
| ! | CTTTTGCAGATTGAATTGGA+GGG | - | chr2_3:42942384-42942403 | Msa0293030:CDS | 35.0% |
| GCAAAAATGCCAAAATTGTC+AGG | + | chr2_3:42942736-42942755 | None:intergenic | 35.0% | |
| !! | TACCTCATTGTGCTACTTAT+TGG | - | chr2_3:42942828-42942847 | Msa0293030:CDS | 35.0% |
| ! | ATCCTTTTTGACAGACAAAG+AGG | - | chr2_3:42943123-42943142 | Msa0293030:intron | 35.0% |
| ! | TCCTTTTTGACAGACAAAGA+GGG | - | chr2_3:42943124-42943143 | Msa0293030:intron | 35.0% |
| ! | GAGGGCGTAATTTCTAAATT+AGG | - | chr2_3:42943142-42943161 | Msa0293030:intron | 35.0% |
| ATGTTTAGATTTCCATCACG+TGG | - | chr2_3:42943188-42943207 | Msa0293030:intron | 35.0% | |
| AAGTGTACTAGTTGGGAATT+GGG | - | chr2_3:42943229-42943248 | Msa0293030:intron | 35.0% | |
| AGCTTATTATCAGGCTAGAA+TGG | + | chr2_3:42943999-42944018 | None:intergenic | 35.0% | |
| TACGGGCAAAAAAAATCCAA+AGG | + | chr2_3:42944247-42944266 | None:intergenic | 35.0% | |
| TCCGTCTAGTAGAATTTAGT+AGG | - | chr2_3:42944273-42944292 | Msa0293030:intron | 35.0% | |
| !!! | TTTTGCTATTATTGGCGTCA+AGG | - | chr2_3:42944381-42944400 | Msa0293030:intron | 35.0% |
| TCAACTCATTTACGATAGAC+TGG | + | chr2_3:42944432-42944451 | None:intergenic | 35.0% | |
| ! | TCGTAAATGAGTTGAATGCT+TGG | - | chr2_3:42944437-42944456 | Msa0293030:intron | 35.0% |
| ! | AATGAGTTGAATGCTTGGAA+AGG | - | chr2_3:42944442-42944461 | Msa0293030:intron | 35.0% |
| ! | ATGAGTTGAATGCTTGGAAA+GGG | - | chr2_3:42944443-42944462 | Msa0293030:intron | 35.0% |
| CAGTCGAAAGATGTTATTCA+AGG | - | chr2_3:42944466-42944485 | Msa0293030:intron | 35.0% | |
| ! | TTGGAAAATGGTCTTGAACA+AGG | + | chr2_3:42944500-42944519 | None:intergenic | 35.0% |
| GTGTTGTCAATAACTGATCA+CGG | - | chr2_3:42944575-42944594 | Msa0293030:intron | 35.0% | |
| GATCACGGAAAATAGAAGTT+TGG | - | chr2_3:42944590-42944609 | Msa0293030:intron | 35.0% | |
| TGTTGTCAAATAACCGGTTA+TGG | + | chr2_3:42944726-42944745 | None:intergenic | 35.0% | |
| ACTCTTGTAAGAGATGTTGA+TGG | - | chr2_3:42944820-42944839 | Msa0293030:intron | 35.0% | |
| !!! | GTTGTTGGTTTTGCAATTCT+TGG | + | chr2_3:42944883-42944902 | None:intergenic | 35.0% |
| TGAAAGTTCCTTTCTTAAGG+GGG | + | chr2_3:42944954-42944973 | None:intergenic | 35.0% | |
| AAGCTTACAAGCAATTTGGA+GGG | + | chr2_3:42944997-42945016 | None:intergenic | 35.0% | |
| AAAGCTTACAAGCAATTTGG+AGG | + | chr2_3:42944998-42945017 | None:intergenic | 35.0% | |
| TCTTAAATGGCAAATTCTGC+AGG | + | chr2_3:42945034-42945053 | None:intergenic | 35.0% | |
| !!! | CATTTTTTGCAAGATAGCGA+AGG | + | chr2_3:42945110-42945129 | None:intergenic | 35.0% |
| CTTCGCTATCTTGCAAAAAA+TGG | - | chr2_3:42945108-42945127 | Msa0293030:intron | 35.0% | |
| GGTGTGAATAGTGAGAAAGA+GGG | + | chr2_3:42942059-42942078 | None:intergenic | 40.0% | |
| TTGAGAGAGAAATGCAGAGA+GGG | + | chr2_3:42942083-42942102 | None:intergenic | 40.0% | |
| TCATCTTCATCTTCATCTGC+TGG | - | chr2_3:42942146-42942165 | Msa0293030:intron | 40.0% | |
| ATTGAATTGGAGGGCTAACA+TGG | - | chr2_3:42942393-42942412 | Msa0293030:CDS | 40.0% | |
| GGTGAATTGTCTCCATTAGT+TGG | - | chr2_3:42942581-42942600 | Msa0293030:intron | 40.0% | |
| AAATGCCAAAATTGTCAGGC+CGG | + | chr2_3:42942732-42942751 | None:intergenic | 40.0% | |
| CACCAATAAGTAGCACAATG+AGG | + | chr2_3:42942833-42942852 | None:intergenic | 40.0% | |
| TGACTGCTAGGAATGAAGTT+TGG | - | chr2_3:42943018-42943037 | Msa0293030:intron | 40.0% | |
| TCAGTACGAAGTGTACTAGT+TGG | - | chr2_3:42943221-42943240 | Msa0293030:intron | 40.0% | |
| CAGTACGAAGTGTACTAGTT+GGG | - | chr2_3:42943222-42943241 | Msa0293030:intron | 40.0% | |
| GAAGTGTACTAGTTGGGAAT+TGG | - | chr2_3:42943228-42943247 | Msa0293030:intron | 40.0% | |
| GTTCAACCAAGACCTTTGTA+CGG | + | chr2_3:42943385-42943404 | None:intergenic | 40.0% | |
| GGCAAATGCTGAATACATTG+AGG | - | chr2_3:42943608-42943627 | Msa0293030:CDS | 40.0% | |
| ! | TCAGACATCTTTGAGTTTCC+CGG | - | chr2_3:42943653-42943672 | Msa0293030:CDS | 40.0% |
| ! | TATGCTGAGATCACTGATTG+TGG | - | chr2_3:42943836-42943855 | Msa0293030:intron | 40.0% |
| TGGTGATATGGCATCACTTA+AGG | + | chr2_3:42944863-42944882 | None:intergenic | 40.0% | |
| AGCTTACAAGCAATTTGGAG+GGG | + | chr2_3:42944996-42945015 | None:intergenic | 40.0% | |
| CACATTTGCAGATTCAATCG+TGG | + | chr2_3:42945209-42945228 | None:intergenic | 40.0% | |
| GGGTGTGAATAGTGAGAAAG+AGG | + | chr2_3:42942060-42942079 | None:intergenic | 45.0% | |
| TGAGAGAGAAATGCAGAGAG+GGG | + | chr2_3:42942082-42942101 | None:intergenic | 45.0% | |
| GTTGAGAGAGAAATGCAGAG+AGG | + | chr2_3:42942084-42942103 | None:intergenic | 45.0% | |
| !! | GAAATGGGGGTGTGTTTTAG+AGG | + | chr2_3:42942111-42942130 | None:intergenic | 45.0% |
| AGCAGCTTGTGGAAGGAAAT+GGG | + | chr2_3:42942126-42942145 | None:intergenic | 45.0% | |
| AAGCAGCTTGTGGAAGGAAA+TGG | + | chr2_3:42942127-42942146 | None:intergenic | 45.0% | |
| AAGATGAAGCAGCTTGTGGA+AGG | + | chr2_3:42942133-42942152 | None:intergenic | 45.0% | |
| GATGAAGATGAAGCAGCTTG+TGG | + | chr2_3:42942137-42942156 | None:intergenic | 45.0% | |
| GAGGGCTAACATGGTTAGAT+TGG | - | chr2_3:42942402-42942421 | Msa0293030:CDS | 45.0% | |
| ! | GCATTTTTGCCAGTTGAGCT+AGG | - | chr2_3:42942746-42942765 | Msa0293030:intron | 45.0% |
| GTAGAAAAAGTGAGGCAGTG+AGG | - | chr2_3:42942990-42943009 | Msa0293030:intron | 45.0% | |
| AGTGAGGATATCTGACTGCT+AGG | - | chr2_3:42943006-42943025 | Msa0293030:intron | 45.0% | |
| GATGCTGTCATATGAGACTC+AGG | + | chr2_3:42943106-42943125 | None:intergenic | 45.0% | |
| GCCCTCTTTGTCTGTCAAAA+AGG | + | chr2_3:42943128-42943147 | None:intergenic | 45.0% | |
| CTCCAGTTGCTTGAAAGTTC+CGG | - | chr2_3:42943257-42943276 | Msa0293030:intron | 45.0% | |
| TACCGGAACTTTCAAGCAAC+TGG | + | chr2_3:42943262-42943281 | None:intergenic | 45.0% | |
| AGTTGCTTGAAAGTTCCGGT+AGG | - | chr2_3:42943261-42943280 | Msa0293030:intron | 45.0% | |
| TGTGTCTTACACTCTCCTAC+CGG | - | chr2_3:42943329-42943348 | Msa0293030:intron | 45.0% | |
| !! | AATCTTCTAGCGTTGACGCT+TGG | + | chr2_3:42943410-42943429 | None:intergenic | 45.0% |
| TTGTCTCGTATTCCAAGCTG+TGG | - | chr2_3:42943459-42943478 | Msa0293030:intron | 45.0% | |
| TCGTATTCCAAGCTGTGGAT+AGG | - | chr2_3:42943464-42943483 | Msa0293030:intron | 45.0% | |
| CAGAAATCCTATCCACAGCT+TGG | + | chr2_3:42943474-42943493 | None:intergenic | 45.0% | |
| ! | CAGACATCTTTGAGTTTCCC+GGG | - | chr2_3:42943654-42943673 | Msa0293030:CDS | 45.0% |
| TTAATGAGTCTGAGCAACCC+GGG | + | chr2_3:42943674-42943693 | None:intergenic | 45.0% | |
| GTTAATGAGTCTGAGCAACC+CGG | + | chr2_3:42943675-42943694 | None:intergenic | 45.0% | |
| GGTATTGTATGCCGAACCTT+TGG | - | chr2_3:42944228-42944247 | Msa0293030:intron | 45.0% | |
| TATGGCAACGCTATAGCGTA+GGG | + | chr2_3:42944708-42944727 | None:intergenic | 45.0% | |
| TTATGGCAACGCTATAGCGT+AGG | + | chr2_3:42944709-42944728 | None:intergenic | 45.0% | |
| GCAGTTTCATCTGCAGTTGT+TGG | + | chr2_3:42944898-42944917 | None:intergenic | 45.0% | |
| TGGCAAATTCTGCAGGTTGT+AGG | + | chr2_3:42945027-42945046 | None:intergenic | 45.0% | |
| AGATTCAATCGTGGCATCTG+CGG | + | chr2_3:42945200-42945219 | None:intergenic | 45.0% | |
| TTGAGCCACTGAAGCTTTCA+AGG | + | chr2_3:42945281-42945300 | None:intergenic | 45.0% | |
| !! | AAAAATCAAATATAAATAAA+TGG | + | chr2_3:42942191-42942210 | None:intergenic | 5.0% |
| AGAGAGAAATGCAGAGAGGG+GGG | + | chr2_3:42942080-42942099 | None:intergenic | 50.0% | |
| GAGAGAGAAATGCAGAGAGG+GGG | + | chr2_3:42942081-42942100 | None:intergenic | 50.0% | |
| CAGCTTGTGGAAGGAAATGG+GGG | + | chr2_3:42942124-42942143 | None:intergenic | 50.0% | |
| GCAGCTTGTGGAAGGAAATG+GGG | + | chr2_3:42942125-42942144 | None:intergenic | 50.0% | |
| TAGAAACTCACACGCACCGA+TGG | - | chr2_3:42942674-42942693 | Msa0293030:intron | 50.0% | |
| ! | GATGTCCGGCCTGACAATTT+TGG | - | chr2_3:42942724-42942743 | Msa0293030:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | + | chr2_3:42942758-42942777 | None:intergenic | 50.0% | |
| TTGAGCTAGGACTTCTGGAC+TGG | - | chr2_3:42942759-42942778 | Msa0293030:intron | 50.0% | |
| AGATTTCCATCACGTGGCTG+AGG | - | chr2_3:42943194-42943213 | Msa0293030:intron | 50.0% | |
| GAGGATCCAAGACCGTACAA+AGG | - | chr2_3:42943370-42943389 | Msa0293030:intron | 50.0% | |
| CCAAGACCTTTGTACGGTCT+TGG | + | chr2_3:42943379-42943398 | None:intergenic | 50.0% | |
| CCAAGACCGTACAAAGGTCT+TGG | - | chr2_3:42943376-42943395 | Msa0293030:intron | 50.0% | |
| ATGGCAACGCTATAGCGTAG+GGG | + | chr2_3:42944707-42944726 | None:intergenic | 50.0% | |
| CGCTATAGCGTTGCCATAAC+CGG | - | chr2_3:42944710-42944729 | Msa0293030:intron | 50.0% | |
| GGCGATCTTGAAAGACGCTA+CGG | + | chr2_3:42944933-42944952 | None:intergenic | 50.0% | |
| CAAGATCGCCCCCTTAAGAA+AGG | - | chr2_3:42944943-42944962 | Msa0293030:intron | 50.0% | |
| TCAGGTTTCTGTCTCGTCAG+AGG | - | chr2_3:42945162-42945181 | Msa0293030:CDS | 50.0% | |
| CAGGTTTCTGTCTCGTCAGA+GGG | - | chr2_3:42945163-42945182 | Msa0293030:CDS | 50.0% | |
| AGGTTTCTGTCTCGTCAGAG+GGG | - | chr2_3:42945164-42945183 | Msa0293030:CDS | 50.0% | |
| GCTTTCAAGGAGGGAGAAAC+AGG | + | chr2_3:42945268-42945287 | None:intergenic | 50.0% | |
| TCCCTCCTTGAAAGCTTCAG+TGG | - | chr2_3:42945273-42945292 | Msa0293030:CDS | 50.0% | |
| GCCACTGAAGCTTTCAAGGA+GGG | + | chr2_3:42945277-42945296 | None:intergenic | 50.0% | |
| AGCCACTGAAGCTTTCAAGG+AGG | + | chr2_3:42945278-42945297 | None:intergenic | 50.0% | |
| TCAAACCCCGGCTCTTCCAT+CGG | + | chr2_3:42942693-42942712 | None:intergenic | 55.0% | |
| TGAACCCCGGTCATGATGTC+CGG | - | chr2_3:42942710-42942729 | Msa0293030:intron | 55.0% | |
| GCCAGTTGAGCTAGGACTTC+TGG | - | chr2_3:42942754-42942773 | Msa0293030:intron | 55.0% | |
| GATAGACCTCAGCCACGTGA+TGG | + | chr2_3:42943203-42943222 | None:intergenic | 55.0% | |
| AGTCAGCGGAAAGTTCCGGT+AGG | + | chr2_3:42943347-42943366 | None:intergenic | 55.0% | |
| TACCGGAACTTTCCGCTGAC+TGG | - | chr2_3:42943346-42943365 | Msa0293030:intron | 55.0% | |
| CTCCAGTCAGCGGAAAGTTC+CGG | + | chr2_3:42943351-42943370 | None:intergenic | 55.0% | |
| ! | GAACTTTCCGCTGACTGGAG+AGG | - | chr2_3:42943351-42943370 | Msa0293030:intron | 55.0% |
| CTTGGATCCTCTCCAGTCAG+CGG | + | chr2_3:42943361-42943380 | None:intergenic | 55.0% | |
| GGCGTCAAGGTCTATGCTTC+TGG | - | chr2_3:42944394-42944413 | Msa0293030:intron | 55.0% | |
| TTCAATCGTGGCATCTGCGG+TGG | + | chr2_3:42945197-42945216 | None:intergenic | 55.0% | |
| ! | ACACGCACCGATGGAAGAGC+CGG | - | chr2_3:42942683-42942702 | Msa0293030:intron | 60.0% |
| AAGAGCCGGGGTTTGAACCC+CGG | - | chr2_3:42942697-42942716 | Msa0293030:intron | 60.0% | |
| CATGACCGGGGTTCAAACCC+CGG | + | chr2_3:42942705-42942724 | None:intergenic | 60.0% | |
| TCAGGCCGGACATCATGACC+GGG | + | chr2_3:42942718-42942737 | None:intergenic | 60.0% | |
| GTCAGGCCGGACATCATGAC+CGG | + | chr2_3:42942719-42942738 | None:intergenic | 60.0% | |
| ATCGTGGCATCTGCGGTGGA+TGG | + | chr2_3:42945193-42945212 | None:intergenic | 60.0% | |
| ! | CACGCACCGATGGAAGAGCC+GGG | - | chr2_3:42942684-42942703 | Msa0293030:intron | 65.0% |
| ! | ACGCACCGATGGAAGAGCCG+GGG | - | chr2_3:42942685-42942704 | Msa0293030:intron | 65.0% |
| CAGGCCGGACATCATGACCG+GGG | + | chr2_3:42942717-42942736 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 42941960 | 42945324 | 42941960 | ID=Msa0293030;Name=Msa0293030 |
| chr2_3 | mRNA | 42941960 | 42945324 | 42941960 | ID=Msa0293030-mRNA-1;Parent=Msa0293030;Name=Msa0293030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|266 |
| chr2_3 | exon | 42945117 | 42945324 | 42945117 | ID=Msa0293030-mRNA-1:exon:13741;Parent=Msa0293030-mRNA-1 |
| chr2_3 | exon | 42943576 | 42943677 | 42943576 | ID=Msa0293030-mRNA-1:exon:13740;Parent=Msa0293030-mRNA-1 |
| chr2_3 | exon | 42942764 | 42942919 | 42942764 | ID=Msa0293030-mRNA-1:exon:13739;Parent=Msa0293030-mRNA-1 |
| chr2_3 | exon | 42942276 | 42942451 | 42942276 | ID=Msa0293030-mRNA-1:exon:13738;Parent=Msa0293030-mRNA-1 |
| chr2_3 | exon | 42941960 | 42942118 | 42941960 | ID=Msa0293030-mRNA-1:exon:13737;Parent=Msa0293030-mRNA-1 |
| chr2_3 | CDS | 42945117 | 42945324 | 42945117 | ID=Msa0293030-mRNA-1:cds;Parent=Msa0293030-mRNA-1 |
| chr2_3 | CDS | 42943576 | 42943677 | 42943576 | ID=Msa0293030-mRNA-1:cds;Parent=Msa0293030-mRNA-1 |
| chr2_3 | CDS | 42942764 | 42942919 | 42942764 | ID=Msa0293030-mRNA-1:cds;Parent=Msa0293030-mRNA-1 |
| chr2_3 | CDS | 42942276 | 42942451 | 42942276 | ID=Msa0293030-mRNA-1:cds;Parent=Msa0293030-mRNA-1 |
| chr2_3 | CDS | 42941960 | 42942118 | 42941960 | ID=Msa0293030-mRNA-1:cds;Parent=Msa0293030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
