AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081440 MtrunA17_Chr1g0193851 97.096 551 10 1 1 545 1 551 0.0 1080
Msa0081440 MtrunA17_Chr7g0226261 29.615 493 304 15 73 539 16 491 3.37e-50 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081440 AT4G01690.1 77.778 540 108 5 12 545 4 537 0.0 836
Msa0081440 AT4G01690.2 73.148 540 102 6 12 545 4 506 0.0 767
Msa0081440 AT5G14220.1 28.163 490 312 13 75 539 21 495 7.77e-49 177
Msa0081440 AT5G14220.4 28.163 490 312 13 75 539 69 543 1.66e-48 177
Msa0081440 AT5G14220.2 28.247 485 288 15 75 539 21 465 1.18e-46 170
Msa0081440 AT5G14220.3 26.622 447 292 12 118 539 2 437 7.70e-40 150
Msa0081440 AT5G14220.5 26.622 447 292 12 118 539 2 437 7.70e-40 150

Find 201 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTCAAAATCTACAAAA+TGG 0.183867 1_2:+59967025 None:intergenic
TGCTCAGGATCCAATTGTTT+TGG 0.225364 1_2:-59967397 Msa0081440:CDS
CAAAATGGTGGTAGCATTAT+TGG 0.232913 1_2:-59969863 Msa0081440:CDS
CCTGAGCATTTGGATTTATA+AGG 0.239671 1_2:+59967412 None:intergenic
ATTGGAGGGGCTACCAATTC+TGG 0.258952 1_2:-59967983 Msa0081440:CDS
GATTTGAGGGGCTGTTCCTT+GGG 0.259606 1_2:-59967284 Msa0081440:CDS
CGGAGAAGGGTTTGAGAGGG+TGG 0.262547 1_2:+59972615 None:intergenic
TGCAAAGAAACAACTCCTTC+TGG 0.269612 1_2:+59969440 None:intergenic
TGGAGAGAGATGGGTTTCTT+TGG 0.273128 1_2:-59972290 Msa0081440:CDS
AGATTTATTGTGTTAGGTTC+TGG 0.274766 1_2:-59967122 Msa0081440:three_prime_UTR
TCTCTCCTGTATTGCTTTGA+AGG 0.274882 1_2:+59969835 None:intergenic
GGCAAGATCAGGGCTGGCTT+TGG 0.280653 1_2:-59971327 Msa0081440:CDS
GGCAAATCAGTTGGCTTTCC+CGG 0.284184 1_2:+59971375 None:intergenic
TTCTGGGTGGCTTCTGTTAC+GGG 0.285192 1_2:-59967105 Msa0081440:three_prime_UTR
TCTGATCTAATGGCTTCTTT+TGG 0.297997 1_2:+59968306 None:intergenic
TCAAATATGCATATTCTGTT+TGG 0.302457 1_2:-59966939 Msa0081440:three_prime_UTR
ACAATTGGATCCTGAGCATT+TGG 0.304286 1_2:+59967402 None:intergenic
GATGGTGAGTTGAAGGGATT+TGG 0.305933 1_2:-59968273 Msa0081440:CDS
TTAAGTATGAAAGCAGCTTT+TGG 0.310156 1_2:-59969905 Msa0081440:CDS
TTTGAAGGACGATCTTGTTT+TGG 0.318825 1_2:-59971451 Msa0081440:intron
GATTTATTGTGTTAGGTTCT+GGG 0.321154 1_2:-59967121 Msa0081440:three_prime_UTR
GCCTCGGTAACAACAACATT+GGG 0.323168 1_2:+59972345 None:intergenic
TCAGAAGGTTGAAAACTATT+AGG 0.342704 1_2:+59972258 None:intergenic
CTTCCAGGTGGTGCTCGGTT+AGG 0.346004 1_2:+59968025 None:intergenic
CCATTCCACAACACAAATCT+AGG 0.348854 1_2:+59971414 None:intergenic
GGATTTGAGGGGCTGTTCCT+TGG 0.351474 1_2:-59967285 Msa0081440:CDS
AATTATTTCAAAACATTGTA+TGG 0.351781 1_2:+59966991 None:intergenic
TTTATCAGATTTATTGTGTT+AGG 0.353203 1_2:-59967128 Msa0081440:three_prime_UTR
ACAGTTTGACCCTTTGGCTT+TGG 0.353786 1_2:+59969696 None:intergenic
TACCTAATGTTTGCACTCCT+TGG 0.364807 1_2:+59968232 None:intergenic
TGAGTATTGGTGGCAAGATC+AGG 0.365761 1_2:-59971338 Msa0081440:CDS
GAGTTCGTGCGTCGAAATCT+TGG 0.366392 1_2:-59971117 Msa0081440:CDS
GTTCTGGGTGGCTTCTGTTA+CGG 0.368455 1_2:-59967106 Msa0081440:three_prime_UTR
TTCTTTGACTTAATGAGTAT+TGG 0.369041 1_2:-59971351 Msa0081440:CDS
GTTTGCTTGCCACTTGCAAT+TGG 0.372185 1_2:+59972763 None:intergenic
TTGAATTGGAGGAGGGGAAA+GGG 0.374371 1_2:+59972577 None:intergenic
TGTATGGATTTACATATATC+AGG 0.376089 1_2:+59967007 None:intergenic
GTAACAAGGTGAAGTTATCT+TGG 0.380123 1_2:-59969520 Msa0081440:CDS
GCTATTCCACAGTTCTTAGT+TGG 0.382466 1_2:-59967354 Msa0081440:CDS
CAGGTCAAAATCTACAAAAT+GGG 0.383515 1_2:+59967026 None:intergenic
GAAATGGAAACTGCCGCAAC+TGG 0.385344 1_2:+59968333 None:intergenic
GCAAAGAAACAACTCCTTCT+GGG 0.387031 1_2:+59969441 None:intergenic
TATCAAGCATTCTGATCTAA+TGG 0.392972 1_2:+59968296 None:intergenic
GGAGAGAGATGGGTTTCTTT+GGG 0.394520 1_2:-59972289 Msa0081440:CDS
TGGCTCTGACCTGAACAAAA+AGG 0.394707 1_2:+59971066 None:intergenic
CTTTGATAAAATCCCAGAAT+TGG 0.395418 1_2:+59967970 None:intergenic
CTATGTGTCTGGTGTTGCCT+TGG 0.396049 1_2:-59967256 Msa0081440:CDS
AGTTCGTGCGTCGAAATCTT+GGG 0.397568 1_2:-59971116 Msa0081440:CDS
TTCAAGAGTAGAACCCTTCC+AGG 0.398239 1_2:+59968010 None:intergenic
TTCCAGGTGGTGCTCGGTTA+GGG 0.398524 1_2:+59968026 None:intergenic
GATCCAACAGTTTGACCCTT+TGG 0.399991 1_2:+59969690 None:intergenic
ACTTTGTCATTACAATGAAA+TGG 0.400400 1_2:+59967150 None:intergenic
GATGGGTTTCTTTGGGAAGA+AGG 0.407260 1_2:-59972282 Msa0081440:CDS
GGTTTGAGAGGGTGGGAAGA+AGG 0.407669 1_2:+59972623 None:intergenic
GGGAAAGGGGAATGGAGATG+AGG 0.409681 1_2:+59972591 None:intergenic
TACTGTTACTGAAACTTAAC+CGG 0.413758 1_2:+59972720 None:intergenic
ACCACCTCAAAATCAAATTC+CGG 0.416364 1_2:-59972462 Msa0081440:CDS
TTGGAGGGGCTACCAATTCT+GGG 0.425638 1_2:-59967982 Msa0081440:CDS
TGGGAAATTGAGGCCGGTGC+CGG 0.426371 1_2:-59971394 Msa0081440:CDS
GTGGTGCTCGGTTAGGGAAA+AGG 0.428455 1_2:+59968032 None:intergenic
GTCAAACTGTTGGATCATTC+CGG 0.429218 1_2:-59969683 Msa0081440:CDS
GCAACATGGTAAGTCCCTTC+CGG 0.429534 1_2:+59969664 None:intergenic
AATGGAGATGAGGGCGGAGA+AGG 0.430870 1_2:+59972601 None:intergenic
AGTATTAGTAAACTGGATAG+TGG 0.439960 1_2:-59969488 Msa0081440:CDS
CTAGATTTGTGTTGTGGAAT+GGG 0.440359 1_2:-59971413 Msa0081440:CDS
AGGGCTGGCTTTGGAGCACT+TGG 0.442410 1_2:-59971318 Msa0081440:CDS
TACCTAGCAGAAATTGCGTT+TGG 0.443372 1_2:+59969642 None:intergenic
TGGAGGAGGGGAAAGGGGAA+TGG 0.448268 1_2:+59972583 None:intergenic
ATGGAGATGAGGGCGGAGAA+GGG 0.448458 1_2:+59972602 None:intergenic
GGAAAGGGGAATGGAGATGA+GGG 0.452855 1_2:+59972592 None:intergenic
TTTGAATTGGAGGAGGGGAA+AGG 0.454290 1_2:+59972576 None:intergenic
TGAATTGGAGGAGGGGAAAG+GGG 0.455157 1_2:+59972578 None:intergenic
AAGGGGAATGGAGATGAGGG+CGG 0.459680 1_2:+59972595 None:intergenic
TCAGTTGGCTTTCCCGGCAC+CGG 0.460917 1_2:+59971381 None:intergenic
TACTCTTGAATTACATTGGA+GGG 0.461041 1_2:-59967997 Msa0081440:CDS
GGAGACGGAGAATGGGGTTA+TGG 0.461330 1_2:+59972526 None:intergenic
TATGTGTCTGGTGTTGCCTT+GGG 0.462152 1_2:-59967255 Msa0081440:CDS
GTGTGGAGGCTCGAACAAAA+TGG 0.463440 1_2:-59969878 Msa0081440:CDS
GTGAAGGTGGAGAAAGAAGG+AGG 0.470526 1_2:+59972664 None:intergenic
GGAGCAACGGAGACGGAGAA+TGG 0.472053 1_2:+59972518 None:intergenic
AAGGAACAGCCCCTCAAATC+CGG 0.472268 1_2:+59967287 None:intergenic
GTTCTACTCTTGAATTACAT+TGG 0.473931 1_2:-59968001 Msa0081440:CDS
TTCTCCACCTTCACCCGCCA+TGG 0.474334 1_2:-59972655 Msa0081440:exon
AGAAAACACACTGGAGGAGG+AGG 0.474459 1_2:+59971288 None:intergenic
AACACAAATCTAGGTGCATC+AGG 0.475052 1_2:+59971423 None:intergenic
GAGCAACGGAGACGGAGAAT+GGG 0.476836 1_2:+59972519 None:intergenic
TGGTGCTCGGTTAGGGAAAA+GGG 0.478452 1_2:+59968033 None:intergenic
TTTGACTTAATGAGTATTGG+TGG 0.479201 1_2:-59971348 Msa0081440:CDS
GAAAGTGCATCTGCAGCAGC+AGG 0.479760 1_2:+59968372 None:intergenic
GGGAAATTGAGGCCGGTGCC+GGG 0.482439 1_2:-59971393 Msa0081440:CDS
AGATCAGAATGCTTGATAGA+TGG 0.483446 1_2:-59968291 Msa0081440:CDS
CGGGTGAAGGTGGAGAAAGA+AGG 0.486279 1_2:+59972661 None:intergenic
CGCCTCGGTAACAACAACAT+TGG 0.487396 1_2:+59972344 None:intergenic
GCCTTGGGAAGGTGTGTTGA+GGG 0.489434 1_2:-59967240 Msa0081440:CDS
CCTTATAAATCCAAATGCTC+AGG 0.489745 1_2:-59967412 Msa0081440:CDS
GCGTCGAAATCTTGGGGCCG+AGG 0.491211 1_2:-59971109 Msa0081440:CDS
AGCCAAGGAGTGCAAACATT+AGG 0.492529 1_2:-59968234 Msa0081440:intron
GACTGTGTGGTTGTTGGTGG+TGG 0.492721 1_2:-59972423 Msa0081440:CDS
TTCCCTAACCGAGCACCACC+TGG 0.500403 1_2:-59968028 Msa0081440:CDS
CTTGATAGATGGTGAGTTGA+AGG 0.501381 1_2:-59968280 Msa0081440:CDS
CAGACATTGGACAACATATC+CGG 0.501565 1_2:-59972739 Msa0081440:five_prime_UTR
ATTTGAGGGGCTGTTCCTTG+GGG 0.502668 1_2:-59967283 Msa0081440:CDS
AAGCCAAAGGGTCAAACTGT+TGG 0.506404 1_2:-59969693 Msa0081440:CDS
GTGACAGGGTCATGAGGAAT+CGG 0.511762 1_2:-59971145 Msa0081440:intron
TCCGTCGACTGTGTGGTTGT+TGG 0.512497 1_2:-59972429 Msa0081440:CDS
ATTATTACCGTGGAGAGAGA+TGG 0.512962 1_2:-59972300 Msa0081440:CDS
TGCCTTGGGAAGGTGTGTTG+AGG 0.513044 1_2:-59967241 Msa0081440:CDS
TGGAGCCTTCAAAGCAATAC+AGG 0.517480 1_2:-59969840 Msa0081440:CDS
CCTAGATTTGTGTTGTGGAA+TGG 0.519996 1_2:-59971414 Msa0081440:CDS
AGGGCGGAGAAGGGTTTGAG+AGG 0.522166 1_2:+59972611 None:intergenic
ATACTCATTAAGTCAAAGAA+AGG 0.523934 1_2:+59971354 None:intergenic
ACAGACAGTGGTTGCAGCAA+TGG 0.525178 1_2:+59969374 None:intergenic
GTTGTTGGTGGTGGCATCAG+TGG 0.527241 1_2:-59972414 Msa0081440:CDS
CAGTGGACTATGTATTGCTC+AGG 0.529861 1_2:-59972397 Msa0081440:CDS
CTACTCTTGAATTACATTGG+AGG 0.531064 1_2:-59967998 Msa0081440:CDS
TTATTACCGTGGAGAGAGAT+GGG 0.537500 1_2:-59972299 Msa0081440:CDS
CCGCAATGGAGCAACGGAGA+CGG 0.540345 1_2:+59972511 None:intergenic
CAAAGAAACAACTCCTTCTG+GGG 0.540704 1_2:+59969442 None:intergenic
TGAAGGTGGAGAAAGAAGGA+GGG 0.542645 1_2:+59972665 None:intergenic
AGAAATTGCGTTTGGCAACA+TGG 0.544410 1_2:+59969650 None:intergenic
TGTTGTGGAATGGGAAATTG+AGG 0.544788 1_2:-59971404 Msa0081440:CDS
AGTGTAACCATGGCGGGTGA+AGG 0.546079 1_2:+59972648 None:intergenic
TCATATACAGGTGTCTATGC+CGG 0.548115 1_2:-59969941 Msa0081440:intron
ATTGGTGGCAAGATCAGGGC+TGG 0.549710 1_2:-59971333 Msa0081440:CDS
ACTCTTGAATTACATTGGAG+GGG 0.550694 1_2:-59967996 Msa0081440:CDS
AAAAGAAAACACACTGGAGG+AGG 0.550713 1_2:+59971285 None:intergenic
GAACCCTTCCAGGTGGTGCT+CGG 0.551325 1_2:+59968020 None:intergenic
GTCGACTGTGTGGTTGTTGG+TGG 0.553915 1_2:-59972426 Msa0081440:CDS
TCAAAGAAAGGCAAATCAGT+TGG 0.554397 1_2:+59971366 None:intergenic
GATTTGGTCAATTGCATCCA+CGG 0.558189 1_2:-59968257 Msa0081440:CDS
GGAGAAGGGTTTGAGAGGGT+GGG 0.559498 1_2:+59972616 None:intergenic
TGTCTGGTGTTGCCTTGGGA+AGG 0.559605 1_2:-59967251 Msa0081440:CDS
AAGGTGAGTGTAACCATGGC+GGG 0.561866 1_2:+59972642 None:intergenic
GAGTATTGGTGGCAAGATCA+GGG 0.567150 1_2:-59971337 Msa0081440:CDS
TTTGAGGGGCTGTTCCTTGG+GGG 0.567319 1_2:-59967282 Msa0081440:CDS
TGCGGTGGATTCCTCCGCAA+TGG 0.568908 1_2:+59972497 None:intergenic
TAGGCGTCTGCCAAAGCCAA+AGG 0.571021 1_2:-59969706 Msa0081440:CDS
TTGCTAAATGCATGAACAAG+TGG 0.571388 1_2:+59967071 None:intergenic
AGGTCAAAATCTACAAAATG+GGG 0.571412 1_2:+59967027 None:intergenic
GAGGCGAAAGATCGAGTTGG+TGG 0.572541 1_2:-59972327 Msa0081440:CDS
TGGCAAGCAAACACAGACAT+TGG 0.573803 1_2:-59972752 Msa0081440:five_prime_UTR
GTAACCATGGCGGGTGAAGG+TGG 0.577809 1_2:+59972651 None:intergenic
ATGCACCTAGATTTGTGTTG+TGG 0.582787 1_2:-59971419 Msa0081440:CDS
TAACCGAGCACCACCTGGAA+GGG 0.584581 1_2:-59968023 Msa0081440:CDS
CAATTGCATCCACGGAGCCA+AGG 0.584598 1_2:-59968249 Msa0081440:CDS
AACCACACAGTCGACGGATG+AGG 0.587789 1_2:+59972434 None:intergenic
AGGCGTCTGCCAAAGCCAAA+GGG 0.588421 1_2:-59969705 Msa0081440:CDS
AATGGTGGTAGCATTATTGG+TGG 0.588539 1_2:-59969860 Msa0081440:CDS
CTAACCGAGCACCACCTGGA+AGG 0.589476 1_2:-59968024 Msa0081440:CDS
AACTGTTGGATCATTCCGGA+AGG 0.589794 1_2:-59969679 Msa0081440:CDS
TGTTGGCAGGTTAGGTAACA+AGG 0.592433 1_2:-59969534 Msa0081440:intron
GTCGACGGATGAGGACTCTC+CGG 0.593499 1_2:+59972443 None:intergenic
GCAGCAATGGACTAGCAACA+TGG 0.594611 1_2:+59969387 None:intergenic
ACTAGCAACATGGGAAGGAA+TGG 0.596346 1_2:+59969397 None:intergenic
CCGTCTCCGTTGCTCCATTG+CGG 0.597409 1_2:-59972511 Msa0081440:CDS
ACCAACAACCACACAGTCGA+CGG 0.599076 1_2:+59972428 None:intergenic
TCCCTCAACACACCTTCCCA+AGG 0.601614 1_2:+59967239 None:intergenic
ACTTGTTCATGCATTTAGCA+AGG 0.603471 1_2:-59967069 Msa0081440:three_prime_UTR
CTTTCTACAAAGCATGCTGA+TGG 0.605299 1_2:-59972372 Msa0081440:CDS
TTTGTTTAATTGCAGACGGA+GGG 0.606182 1_2:-59967474 Msa0081440:intron
GGGCGGAGAAGGGTTTGAGA+GGG 0.606191 1_2:+59972612 None:intergenic
GTTTGCACTCCTTGGCTCCG+TGG 0.607612 1_2:+59968240 None:intergenic
TACTTCAGCTGCTATCTCGT+AGG 0.608699 1_2:+59967215 None:intergenic
ACCAACTCGATCTTTCGCCT+CGG 0.609410 1_2:+59972329 None:intergenic
GAAAACACACTGGAGGAGGA+GGG 0.609629 1_2:+59971289 None:intergenic
ATGTAAGAGCCAATTGCAAG+TGG 0.609856 1_2:-59972772 Msa0081440:five_prime_UTR
CCCCAATGTTGTTGTTACCG+AGG 0.610569 1_2:-59972346 Msa0081440:CDS
ATGGTGAGCATAGGATCAGA+AGG 0.615324 1_2:+59972243 None:intergenic
CATACCACCATGGTGAGCAT+AGG 0.615890 1_2:+59972234 None:intergenic
ATGGAAACTGCCGCAACTGG+AGG 0.618307 1_2:+59968336 None:intergenic
TCTCCGTTGCTCCATTGCGG+AGG 0.619176 1_2:-59972508 Msa0081440:CDS
TGATCCTATGCTCACCATGG+TGG 0.621350 1_2:-59972238 Msa0081440:intron
ATTCCTCCGCAATGGAGCAA+CGG 0.621982 1_2:+59972505 None:intergenic
TGCCAAACGCAATTTCTGCT+AGG 0.622423 1_2:-59969644 Msa0081440:intron
GTCCTCATCCGTCGACTGTG+TGG 0.625269 1_2:-59972436 Msa0081440:CDS
TTATTGTGTTAGGTTCTGGG+TGG 0.627991 1_2:-59967118 Msa0081440:three_prime_UTR
AAGAACTGTGGAATAGCTTG+AGG 0.628529 1_2:+59967360 None:intergenic
TTGATAGATGGTGAGTTGAA+GGG 0.630684 1_2:-59968279 Msa0081440:CDS
TGCAGAGAGTGTACAAGTAG+CGG 0.631367 1_2:-59967179 Msa0081440:exon
ACGAAGGTGACAGGGTCATG+AGG 0.634684 1_2:-59971151 Msa0081440:intron
GTGGAATGGGAAATTGAGGC+CGG 0.635091 1_2:-59971400 Msa0081440:CDS
AAGAAACCCATCTCTCTCCA+CGG 0.637483 1_2:+59972293 None:intergenic
AGGCGAAAGATCGAGTTGGT+GGG 0.637489 1_2:-59972326 Msa0081440:CDS
CAGCAATGGACTAGCAACAT+GGG 0.637669 1_2:+59969388 None:intergenic
TGGTGGGAATATTATTACCG+TGG 0.637750 1_2:-59972310 Msa0081440:CDS
AATGGACTAGCAACATGGGA+AGG 0.638945 1_2:+59969392 None:intergenic
GTTCGTGCGTCGAAATCTTG+GGG 0.639972 1_2:-59971115 Msa0081440:CDS
GTCAAAATCTACAAAATGGG+GGG 0.647394 1_2:+59967029 None:intergenic
GGTCAAAATCTACAAAATGG+GGG 0.651163 1_2:+59967028 None:intergenic
AGATGTCCAACTAAGAACTG+TGG 0.655954 1_2:+59967348 None:intergenic
TTCTGATCCTATGCTCACCA+TGG 0.662399 1_2:-59972241 Msa0081440:CDS
GAAGAAGGTGAGTGTAACCA+TGG 0.663337 1_2:+59972638 None:intergenic
AGCAACGGAGACGGAGAATG+GGG 0.663402 1_2:+59972520 None:intergenic
ACCGAGGCGAAAGATCGAGT+TGG 0.669092 1_2:-59972330 Msa0081440:CDS
TTGACGTATGAAACCCCAGA+AGG 0.670583 1_2:-59969455 Msa0081440:CDS
ACTGTTGGATCATTCCGGAA+GGG 0.675135 1_2:-59969678 Msa0081440:CDS
TGGAGGCTCGAACAAAATGG+TGG 0.692440 1_2:-59969875 Msa0081440:CDS
GAAGGTGAGTGTAACCATGG+CGG 0.701877 1_2:+59972641 None:intergenic
TTGATTACAACATACCACCA+TGG 0.703359 1_2:+59972224 None:intergenic
CCTCGGTAACAACAACATTG+GGG 0.719137 1_2:+59972346 None:intergenic
AAGAGTAGAACCCTTCCAGG+TGG 0.742286 1_2:+59968013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTAAATTAAGT+TGG + chr1_2:59969277-59969296 None:intergenic 10.0%
!!! TTGATTAATATTTAAAATAG+AGG - chr1_2:59969484-59969503 Msa0081440:CDS 10.0%
!!! TGATTAATATTTAAAATAGA+GGG - chr1_2:59969485-59969504 Msa0081440:CDS 10.0%
!!! AATGAATTTTGATTTTGAAT+TGG + chr1_2:59967148-59967167 None:intergenic 15.0%
!! TTGAAATTGAAATTGAAATT+TGG - chr1_2:59967556-59967575 Msa0081440:intron 15.0%
!!! GTCATTTTTTTTAGTAAATT+TGG - chr1_2:59967637-59967656 Msa0081440:intron 15.0%
!!! TTATGTCTTTTCATATTTAT+CGG + chr1_2:59967810-59967829 None:intergenic 15.0%
!! AGAAAATTAAACAAAAGAAA+GGG + chr1_2:59968452-59968471 None:intergenic 15.0%
!! AAGAAAATTAAACAAAAGAA+AGG + chr1_2:59968453-59968472 None:intergenic 15.0%
!! ACTATGTTAAATGAAATATA+TGG - chr1_2:59968473-59968492 Msa0081440:intron 15.0%
!!! TTTTATATAATATAGGAGTT+TGG - chr1_2:59968757-59968776 Msa0081440:intron 15.0%
!!! AAATTAAGTTGGATATTTTT+TGG + chr1_2:59969266-59969285 None:intergenic 15.0%
!! ATGAAGTAATATTAAAGAAA+AGG + chr1_2:59969689-59969708 None:intergenic 15.0%
!!! AGTTTTATTAGTTGAATATT+TGG - chr1_2:59970402-59970421 Msa0081440:intron 15.0%
!! AATTATTTCAAAACATTGTA+TGG + chr1_2:59972720-59972739 None:intergenic 15.0%
!! TTAACGTATCAAAATAGAAA+AGG - chr1_2:59967605-59967624 Msa0081440:intron 20.0%
!!! ATAATTGATTAATTAGCTTC+TGG - chr1_2:59967697-59967716 Msa0081440:intron 20.0%
!!! TAGAGATGTTTTTGTAATTT+TGG - chr1_2:59968151-59968170 Msa0081440:intron 20.0%
!!! TTTTGTAATTTTGGAACATT+TGG - chr1_2:59968160-59968179 Msa0081440:intron 20.0%
!! TTAAATGAAATATATGGAAC+TGG - chr1_2:59968479-59968498 Msa0081440:intron 20.0%
!! ATATGATATAATATTGACGA+AGG - chr1_2:59968541-59968560 Msa0081440:intron 20.0%
!!! CGGAGATTTTTATATAATAT+AGG - chr1_2:59968750-59968769 Msa0081440:intron 20.0%
!! AAGAAACTTCTTATTCTATT+AGG + chr1_2:59968844-59968863 None:intergenic 20.0%
!!! ATGGATTTGAAATATTCTTT+GGG + chr1_2:59968873-59968892 None:intergenic 20.0%
!!! AAATTTCAGTTTTTAAGAGA+CGG + chr1_2:59968904-59968923 None:intergenic 20.0%
!!! TGAGTTTTAAACAAATGAAA+AGG + chr1_2:59969192-59969211 None:intergenic 20.0%
!! TCATTTCATATCAAAATATC+CGG + chr1_2:59969418-59969437 None:intergenic 20.0%
!! TCATTTATAAGAGGAAAAAT+TGG + chr1_2:59969623-59969642 None:intergenic 20.0%
!! TAATGCGAATATTAAAGAAA+AGG + chr1_2:59969715-59969734 None:intergenic 20.0%
!! TTTCTTTAATATTCGCATTA+AGG - chr1_2:59969715-59969734 Msa0081440:intron 20.0%
!!! TCAGAGTAAATGTATTTTTA+CGG + chr1_2:59969926-59969945 None:intergenic 20.0%
!!! GATTTTTCTATAAAAATCAG+AGG + chr1_2:59970623-59970642 None:intergenic 20.0%
!! TGTGATTGATATAATAATAC+TGG + chr1_2:59970870-59970889 None:intergenic 20.0%
!! TATTGCCAATTAAAAAAACA+AGG + chr1_2:59970896-59970915 None:intergenic 20.0%
!!! CATAACTCTAAAATATTACA+AGG + chr1_2:59970988-59971007 None:intergenic 20.0%
!!! ACAAATAAGTTATTTCTGAA+TGG - chr1_2:59971237-59971256 Msa0081440:intron 20.0%
!! TTGAATTTATTATGCAAAAG+TGG - chr1_2:59971504-59971523 Msa0081440:intron 20.0%
!! TACAGTTCATAATTTATACT+TGG + chr1_2:59971578-59971597 None:intergenic 20.0%
!! AAGTATGTAAAATATGTAAC+AGG + chr1_2:59972136-59972155 None:intergenic 20.0%
!! AAAGTTTCTCTTAAAAATAC+CGG - chr1_2:59972402-59972421 Msa0081440:CDS 20.0%
!! TTTATCAGATTTATTGTGTT+AGG - chr1_2:59972580-59972599 Msa0081440:CDS 20.0%
!!! GAATTTTGATTTTGAATTGG+AGG + chr1_2:59967145-59967164 None:intergenic 25.0%
!! TTCATATTTATCGGTTAGTT+TGG + chr1_2:59967801-59967820 None:intergenic 25.0%
! CTAGAATCTTGTGAAAAAAT+TGG - chr1_2:59967921-59967940 Msa0081440:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG - chr1_2:59968034-59968053 Msa0081440:CDS 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG - chr1_2:59968034-59968053 Msa0081440:CDS 25.0%
! ATACTCATTAAGTCAAAGAA+AGG + chr1_2:59968357-59968376 None:intergenic 25.0%
!! TTCTTTGACTTAATGAGTAT+TGG - chr1_2:59968357-59968376 Msa0081440:CDS 25.0%
!! TGGATTTGAAATATTCTTTG+GGG + chr1_2:59968872-59968891 None:intergenic 25.0%
!! GATGGATTTGAAATATTCTT+TGG + chr1_2:59968874-59968893 None:intergenic 25.0%
!!! AATTTCAGTTTTTAAGAGAC+GGG + chr1_2:59968903-59968922 None:intergenic 25.0%
! ATTTGCATAGATTAAGACTT+TGG - chr1_2:59968927-59968946 Msa0081440:intron 25.0%
! TTTGCATAGATTAAGACTTT+GGG - chr1_2:59968928-59968947 Msa0081440:intron 25.0%
! ATGGTGCATTTATCAAATTA+AGG + chr1_2:59969588-59969607 None:intergenic 25.0%
! AAATTGGAAGAAAGGAAAAA+TGG + chr1_2:59969607-59969626 None:intergenic 25.0%
!! GCTTTCATACTTAATTTTGA+AGG + chr1_2:59969797-59969816 None:intergenic 25.0%
!!! AAATGTATTTTTACGGATCA+CGG + chr1_2:59969919-59969938 None:intergenic 25.0%
!! ATACATTTACTCTGAGTTTT+TGG - chr1_2:59969931-59969950 Msa0081440:CDS 25.0%
!!! GCTTTTAAGTATTAGTAAAC+TGG - chr1_2:59970213-59970232 Msa0081440:intron 25.0%
!!! CTGTAAGTTTTTCTAAAAAG+TGG - chr1_2:59970353-59970372 Msa0081440:intron 25.0%
! AAATCAGAGGATGATAAATA+GGG + chr1_2:59970610-59970629 None:intergenic 25.0%
! AAAATCAGAGGATGATAAAT+AGG + chr1_2:59970611-59970630 None:intergenic 25.0%
!! TTTCTTTTCTGTTCAACATA+TGG - chr1_2:59970644-59970663 Msa0081440:intron 25.0%
! TTTCCAAAAACTTACTACTA+CGG - chr1_2:59970702-59970721 Msa0081440:intron 25.0%
!!! TACTACGGATAATTTTGTTT+GGG - chr1_2:59970717-59970736 Msa0081440:intron 25.0%
! CAGAATCAAAGACAAAAATT+TGG - chr1_2:59970787-59970806 Msa0081440:intron 25.0%
! CTTATGGCTGTTAAAATATT+TGG - chr1_2:59970823-59970842 Msa0081440:intron 25.0%
!!! CAGTTCCTTGTTTTTTTAAT+TGG - chr1_2:59970888-59970907 Msa0081440:intron 25.0%
! TTAACAATAATTTCACAGTC+AGG + chr1_2:59970948-59970967 None:intergenic 25.0%
! AGAACTAGTTCCTTAAATAT+CGG - chr1_2:59971117-59971136 Msa0081440:CDS 25.0%
! AAGTAAACAACCGATATTTA+AGG + chr1_2:59971130-59971149 None:intergenic 25.0%
! GTAATTATTAAAAAATCGCG+TGG + chr1_2:59971552-59971571 None:intergenic 25.0%
! GTTCATAATTTATACTTGGA+TGG + chr1_2:59971574-59971593 None:intergenic 25.0%
!! TAAAATGTGTTGTGTAGTTT+TGG - chr1_2:59971596-59971615 Msa0081440:intron 25.0%
!! TGGTAATGATAACATATTTG+TGG - chr1_2:59971625-59971644 Msa0081440:intron 25.0%
! GGTAATGATAACATATTTGT+GGG - chr1_2:59971626-59971645 Msa0081440:intron 25.0%
! AAGTTTAAACACTTGAAACA+AGG + chr1_2:59971941-59971960 None:intergenic 25.0%
! TATATGATCAAATAACAGAG+AGG + chr1_2:59972113-59972132 None:intergenic 25.0%
!! TAAGGATTTTTCTCAAATCT+CGG + chr1_2:59972281-59972300 None:intergenic 25.0%
! ACTTTGTCATTACAATGAAA+TGG + chr1_2:59972561-59972580 None:intergenic 25.0%
! TGTATGGATTTACATATATC+AGG + chr1_2:59972704-59972723 None:intergenic 25.0%
! TCAAATATGCATATTCTGTT+TGG - chr1_2:59972769-59972788 Msa0081440:five_prime_UTR 25.0%
TACTGTTACTGAAACTTAAC+CGG + chr1_2:59966991-59967010 None:intergenic 30.0%
!! TTTGATTTTGAATTGGAGGA+GGG + chr1_2:59967141-59967160 None:intergenic 30.0%
!!! TTTTGATTTTGAATTGGAGG+AGG + chr1_2:59967142-59967161 None:intergenic 30.0%
TCAGAAGGTTGAAAACTATT+AGG + chr1_2:59967453-59967472 None:intergenic 30.0%
!! TTACGAATGAAGCTTTAAAG+AGG + chr1_2:59967518-59967537 None:intergenic 30.0%
TTAAAGCTTCATTCGTAATG+TGG - chr1_2:59967520-59967539 Msa0081440:intron 30.0%
! ATTGATTAATTAGCTTCTGG+CGG - chr1_2:59967700-59967719 Msa0081440:intron 30.0%
GTGTTTGAATTTGTAGTGTT+TGG - chr1_2:59967758-59967777 Msa0081440:intron 30.0%
GAAAAAATTGGTTACCAAAC+AGG - chr1_2:59967933-59967952 Msa0081440:intron 30.0%
TTATAGCTTATAAGCTCGTA+TGG + chr1_2:59967969-59967988 None:intergenic 30.0%
!! AGACACTTAGTTGTTTTGTT+TGG - chr1_2:59968027-59968046 Msa0081440:CDS 30.0%
!! AGATGCTTAGTTGTTTTGTT+TGG - chr1_2:59968060-59968079 Msa0081440:intron 30.0%
GTTGTTACTATTAATCAGCT+TGG - chr1_2:59968094-59968113 Msa0081440:intron 30.0%
!!! ACATGTTGGTAATATGGTTT+TGG - chr1_2:59968206-59968225 Msa0081440:intron 30.0%
!!! TTTGGTTGTTTTATTTGTGC+AGG - chr1_2:59968224-59968243 Msa0081440:intron 30.0%
!! TTTGACTTAATGAGTATTGG+TGG - chr1_2:59968360-59968379 Msa0081440:CDS 30.0%
AAACAGGACAATGAAAAAGT+TGG + chr1_2:59968668-59968687 None:intergenic 30.0%
! AACATAAAAGTACAGGTAGT+TGG + chr1_2:59968726-59968745 None:intergenic 30.0%
ACCCTATAATATTCAGTTCT+TGG - chr1_2:59968780-59968799 Msa0081440:intron 30.0%
GCCAAGAACTGAATATTATA+GGG + chr1_2:59968784-59968803 None:intergenic 30.0%
! GCAATATTTCTATGTTCATG+CGG - chr1_2:59968977-59968996 Msa0081440:intron 30.0%
!! ATAAGTGGCTACACTTTTTA+GGG - chr1_2:59969010-59969029 Msa0081440:intron 30.0%
! TCTGCATATTGTGTTAGTTT+AGG - chr1_2:59969047-59969066 Msa0081440:intron 30.0%
! CTGCATATTGTGTTAGTTTA+GGG - chr1_2:59969048-59969067 Msa0081440:intron 30.0%
! TTAGGGCGTAATTACAATTT+TGG - chr1_2:59969065-59969084 Msa0081440:intron 30.0%
AGGATTTCAAGAGAAGATTT+GGG + chr1_2:59969301-59969320 None:intergenic 30.0%
TAGGATTTCAAGAGAAGATT+TGG + chr1_2:59969302-59969321 None:intergenic 30.0%
! ATTTTGTAGAATGCGAGATT+AGG + chr1_2:59969321-59969340 None:intergenic 30.0%
GATATGAAATGAGACTTTAG+AGG - chr1_2:59969426-59969445 Msa0081440:CDS 30.0%
TCACACATAACTCAAACTAT+AGG - chr1_2:59969544-59969563 Msa0081440:intron 30.0%
CACACATAACTCAAACTATA+GGG - chr1_2:59969545-59969564 Msa0081440:intron 30.0%
AAGAGGAAAAATTGGAAGAA+AGG + chr1_2:59969615-59969634 None:intergenic 30.0%
TGCTTGTCATCATTTATAAG+AGG + chr1_2:59969632-59969651 None:intergenic 30.0%
!! AGCTGATTTTTGTCATATAC+AGG - chr1_2:59969755-59969774 Msa0081440:intron 30.0%
! TTAAGTATGAAAGCAGCTTT+TGG - chr1_2:59969803-59969822 Msa0081440:intron 30.0%
! TAAGTATGAAAGCAGCTTTT+GGG - chr1_2:59969804-59969823 Msa0081440:intron 30.0%
!! AATGTATTTTTACGGATCAC+GGG + chr1_2:59969918-59969937 None:intergenic 30.0%
! GATATTTTGCCATAGTTGAT+GGG - chr1_2:59969953-59969972 Msa0081440:intron 30.0%
ACTGATTGCAACAATTATGT+AGG - chr1_2:59969983-59970002 Msa0081440:intron 30.0%
AGTATTAGTAAACTGGATAG+TGG - chr1_2:59970220-59970239 Msa0081440:intron 30.0%
TTAGAAAAACTTACAGACAG+TGG + chr1_2:59970349-59970368 None:intergenic 30.0%
ATTAGTTGAATATTTGGACC+TGG - chr1_2:59970408-59970427 Msa0081440:intron 30.0%
TTAGTTGAATATTTGGACCT+GGG - chr1_2:59970409-59970428 Msa0081440:intron 30.0%
! TTTTGTAAGTATACACGTCT+TGG - chr1_2:59970456-59970475 Msa0081440:intron 30.0%
AAACACTCAAACAATCAAAG+AGG + chr1_2:59970527-59970546 None:intergenic 30.0%
AATAGGGAAATGTGAAATCA+TGG + chr1_2:59970594-59970613 None:intergenic 30.0%
! TATCCGTAGTAGTAAGTTTT+TGG + chr1_2:59970708-59970727 None:intergenic 30.0%
! CTACTACGGATAATTTTGTT+TGG - chr1_2:59970716-59970735 Msa0081440:intron 30.0%
! TTGATTCTGAAAACTGTCTA+TGG + chr1_2:59970776-59970795 None:intergenic 30.0%
AAATGCCTCAACTTATATGA+TGG + chr1_2:59971285-59971304 None:intergenic 30.0%
AGAGATATTGAAATGTAGTC+AGG + chr1_2:59971311-59971330 None:intergenic 30.0%
TATCAAGCATTCTGATCTAA+TGG + chr1_2:59971415-59971434 None:intergenic 30.0%
GTTCTACTCTTGAATTACAT+TGG - chr1_2:59971707-59971726 Msa0081440:intron 30.0%
TACTCTTGAATTACATTGGA+GGG - chr1_2:59971711-59971730 Msa0081440:intron 30.0%
CTTTGATAAAATCCCAGAAT+TGG + chr1_2:59971741-59971760 None:intergenic 30.0%
!!! CAATTCTGGGATTTTATCAA+AGG - chr1_2:59971739-59971758 Msa0081440:intron 30.0%
! AATGATTTTCATCAGAACTC+TGG - chr1_2:59971899-59971918 Msa0081440:intron 30.0%
!! GAAGAGAATCTTTGAAATCT+TGG - chr1_2:59971997-59972016 Msa0081440:intron 30.0%
!! ATCTTTGAAATCTTGGTCAA+AGG - chr1_2:59972004-59972023 Msa0081440:intron 30.0%
GCAATTAAACAAAAGGCTTT+AGG + chr1_2:59972227-59972246 None:intergenic 30.0%
TCTTAAAAATACCGGATTTG+AGG - chr1_2:59972410-59972429 Msa0081440:CDS 30.0%
CTTAAAAATACCGGATTTGA+GGG - chr1_2:59972411-59972430 Msa0081440:CDS 30.0%
TTAAAAATACCGGATTTGAG+GGG - chr1_2:59972412-59972431 Msa0081440:CDS 30.0%
AGATTTATTGTGTTAGGTTC+TGG - chr1_2:59972586-59972605 Msa0081440:CDS 30.0%
GATTTATTGTGTTAGGTTCT+GGG - chr1_2:59972587-59972606 Msa0081440:CDS 30.0%
AGGTCAAAATCTACAAAATG+GGG + chr1_2:59972684-59972703 None:intergenic 30.0%
CAGGTCAAAATCTACAAAAT+GGG + chr1_2:59972685-59972704 None:intergenic 30.0%
TCAGGTCAAAATCTACAAAA+TGG + chr1_2:59972686-59972705 None:intergenic 30.0%
! TTGATTTTGAATTGGAGGAG+GGG + chr1_2:59967140-59967159 None:intergenic 35.0%
!!! GATTTTGAGGTGGTTTTAGT+CGG + chr1_2:59967240-59967259 None:intergenic 35.0%
ACCACCTCAAAATCAAATTC+CGG - chr1_2:59967246-59967265 Msa0081440:CDS 35.0%
TTGATTACAACATACCACCA+TGG + chr1_2:59967487-59967506 None:intergenic 35.0%
TTTAGGCTCTGTCAAAATAG+CGG - chr1_2:59967674-59967693 Msa0081440:intron 35.0%
!! AAGCTTTAAGCTACTTGAAG+TGG - chr1_2:59967864-59967883 Msa0081440:intron 35.0%
GTTACCAAACAGGTCTAATT+TGG - chr1_2:59967943-59967962 Msa0081440:intron 35.0%
! CATTTTGAGCTTATAGCAGA+TGG + chr1_2:59967993-59968012 None:intergenic 35.0%
!! TTTGAAGGACGATCTTGTTT+TGG - chr1_2:59968257-59968276 Msa0081440:CDS 35.0%
!!! TTGAAGGACGATCTTGTTTT+GGG - chr1_2:59968258-59968277 Msa0081440:CDS 35.0%
CTAGATTTGTGTTGTGGAAT+GGG - chr1_2:59968295-59968314 Msa0081440:CDS 35.0%
TCAAAGAAAGGCAAATCAGT+TGG + chr1_2:59968345-59968364 None:intergenic 35.0%
ATCAAAAGAAAACACACTGG+AGG + chr1_2:59968429-59968448 None:intergenic 35.0%
ATGAAATATATGGAACTGGC+AGG - chr1_2:59968483-59968502 Msa0081440:intron 35.0%
ATAATATTGACGAAGGTGAC+AGG - chr1_2:59968548-59968567 Msa0081440:intron 35.0%
TAATATTGACGAAGGTGACA+GGG - chr1_2:59968549-59968568 Msa0081440:intron 35.0%
AACAACTGAGAGTGAAAAAC+AGG + chr1_2:59968684-59968703 None:intergenic 35.0%
! CTACCTGTACTTTTATGTTC+TGG - chr1_2:59968727-59968746 Msa0081440:intron 35.0%
CGCCAAGAACTGAATATTAT+AGG + chr1_2:59968785-59968804 None:intergenic 35.0%
CCAAAAAGCAGTTATCATGA+TGG + chr1_2:59968821-59968840 None:intergenic 35.0%
!! CCATCATGATAACTGCTTTT+TGG - chr1_2:59968818-59968837 Msa0081440:intron 35.0%
TGCGGAATTTGTAACATAAG+TGG - chr1_2:59968995-59969014 Msa0081440:intron 35.0%
!! CATAAGTGGCTACACTTTTT+AGG - chr1_2:59969009-59969028 Msa0081440:intron 35.0%
!!! GTCTCTGTAGTTTTTTTCGA+GGG + chr1_2:59969519-59969538 None:intergenic 35.0%
! GTTTGAGTTATGTGTGACTT+TGG + chr1_2:59969541-59969560 None:intergenic 35.0%
ATGACAAAAATCAGCTAAGC+AGG + chr1_2:59969751-59969770 None:intergenic 35.0%
!! ACTTAATTTTGAAGGATCGC+CGG + chr1_2:59969789-59969808 None:intergenic 35.0%
CAAAATGGTGGTAGCATTAT+TGG - chr1_2:59969845-59969864 Msa0081440:CDS 35.0%
!! ATGTATTTTTACGGATCACG+GGG + chr1_2:59969917-59969936 None:intergenic 35.0%
! GGATATTTTGCCATAGTTGA+TGG - chr1_2:59969952-59969971 Msa0081440:intron 35.0%
GTAAACTAACCCATCAACTA+TGG + chr1_2:59969965-59969984 None:intergenic 35.0%
TGGTGAAACAACTAGAACAA+TGG + chr1_2:59970109-59970128 None:intergenic 35.0%
GTAACAAGGTGAAGTTATCT+TGG - chr1_2:59970188-59970207 Msa0081440:intron 35.0%
TTCAATAAGACAAATGACCC+AGG + chr1_2:59970429-59970448 None:intergenic 35.0%
AAAACTAAAGACCTGCAGTA+AGG + chr1_2:59970484-59970503 None:intergenic 35.0%
!!! GGTTTTGTTTAGTGATTAGC+AGG - chr1_2:59970738-59970757 Msa0081440:intron 35.0%
TTTAGTGATTAGCAGGTTCT+AGG - chr1_2:59970745-59970764 Msa0081440:intron 35.0%
TTAGTGATTAGCAGGTTCTA+GGG - chr1_2:59970746-59970765 Msa0081440:intron 35.0%
! ACTGGTTTCTTCAGACTTAT+AGG + chr1_2:59970852-59970871 None:intergenic 35.0%
!!! ATTACGGGTTTTTTGCATAC+AGG + chr1_2:59971055-59971074 None:intergenic 35.0%
CAAAAAACCCGTAATGTTTC+CGG - chr1_2:59971060-59971079 Msa0081440:intron 35.0%
CTATATAGCTTCTGCTATGT+AGG + chr1_2:59971099-59971118 None:intergenic 35.0%
ATTTCTGAATGGCCAATTTC+TGG - chr1_2:59971248-59971267 Msa0081440:intron 35.0%
!! GTTTTATTATCCTCCAGTTG+CGG - chr1_2:59971362-59971381 Msa0081440:CDS 35.0%
! TCTAATGGCTTCTTTTGGAT+AGG + chr1_2:59971400-59971419 None:intergenic 35.0%
! TCTGATCTAATGGCTTCTTT+TGG + chr1_2:59971405-59971424 None:intergenic 35.0%
AGATCAGAATGCTTGATAGA+TGG - chr1_2:59971417-59971436 Msa0081440:CDS 35.0%
! TTGATAGATGGTGAGTTGAA+GGG - chr1_2:59971429-59971448 Msa0081440:CDS 35.0%
!!! ATGTGTTGTGTAGTTTTGGA+AGG - chr1_2:59971600-59971619 Msa0081440:intron 35.0%
!!! TTGTGTAGTTTTGGAAGGTA+TGG - chr1_2:59971605-59971624 Msa0081440:intron 35.0%
AACATATTTGTGGGTTTGAC+AGG - chr1_2:59971635-59971654 Msa0081440:intron 35.0%
CTACTCTTGAATTACATTGG+AGG - chr1_2:59971710-59971729 Msa0081440:intron 35.0%
ACTCTTGAATTACATTGGAG+GGG - chr1_2:59971712-59971731 Msa0081440:intron 35.0%
!! TCTGGGATTTTATCAAAGGT+AGG - chr1_2:59971743-59971762 Msa0081440:intron 35.0%
TGCAATTGTTTGAGCTGTTA+TGG - chr1_2:59971799-59971818 Msa0081440:intron 35.0%
! AGCTGTTATGGTGTCAAATA+AGG - chr1_2:59971811-59971830 Msa0081440:intron 35.0%
AAATAAGGCGAAAGTGAAAG+AGG - chr1_2:59971826-59971845 Msa0081440:intron 35.0%
! TTCTTTTCCTTCGTTGTTGT+TGG - chr1_2:59971849-59971868 Msa0081440:intron 35.0%
! CTTCATCATGTCTTGATGAT+TGG - chr1_2:59972067-59972086 Msa0081440:intron 35.0%
!! GCCTTTTGTTTAATTGCAGA+CGG - chr1_2:59972230-59972249 Msa0081440:intron 35.0%
TCCGTCTGCAATTAAACAAA+AGG + chr1_2:59972234-59972253 None:intergenic 35.0%
!! TTTTGTTTAATTGCAGACGG+AGG - chr1_2:59972233-59972252 Msa0081440:intron 35.0%
TTTGTTTAATTGCAGACGGA+GGG - chr1_2:59972234-59972253 Msa0081440:intron 35.0%
CCTGAGCATTTGGATTTATA+AGG + chr1_2:59972299-59972318 None:intergenic 35.0%
CCTTATAAATCCAAATGCTC+AGG - chr1_2:59972296-59972315 Msa0081440:CDS 35.0%
TTGCTAAATGCATGAACAAG+TGG + chr1_2:59972640-59972659 None:intergenic 35.0%
ACTTGTTCATGCATTTAGCA+AGG - chr1_2:59972639-59972658 Msa0081440:CDS 35.0%
GTCAAAATCTACAAAATGGG+GGG + chr1_2:59972682-59972701 None:intergenic 35.0%
GGTCAAAATCTACAAAATGG+GGG + chr1_2:59972683-59972702 None:intergenic 35.0%
CAGACATTGGACAACATATC+CGG - chr1_2:59966969-59966988 Msa0081440:three_prime_UTR 40.0%
!! TCCGGAATTTGATTTTGAGG+TGG + chr1_2:59967250-59967269 None:intergenic 40.0%
!! CTCTCCGGAATTTGATTTTG+AGG + chr1_2:59967253-59967272 None:intergenic 40.0%
CTTTCTACAAAGCATGCTGA+TGG - chr1_2:59967336-59967355 Msa0081440:CDS 40.0%
TGGTGGGAATATTATTACCG+TGG - chr1_2:59967398-59967417 Msa0081440:CDS 40.0%
ATTATTACCGTGGAGAGAGA+TGG - chr1_2:59967408-59967427 Msa0081440:CDS 40.0%
TTATTACCGTGGAGAGAGAT+GGG - chr1_2:59967409-59967428 Msa0081440:CDS 40.0%
TGGTCCTCGAATGTGTATTT+AGG - chr1_2:59967657-59967676 Msa0081440:intron 40.0%
AGAGCCTAAATACACATTCG+AGG + chr1_2:59967664-59967683 None:intergenic 40.0%
ACACCTAGTTTATCCGCTAT+CGG + chr1_2:59967742-59967761 None:intergenic 40.0%
ATGGCCAAATTAGACCTGTT+TGG + chr1_2:59967950-59967969 None:intergenic 40.0%
TATTACCAACATGTGTGAGG+CGG + chr1_2:59968200-59968219 None:intergenic 40.0%
CCATATTACCAACATGTGTG+AGG + chr1_2:59968203-59968222 None:intergenic 40.0%
!! CCTCACACATGTTGGTAATA+TGG - chr1_2:59968200-59968219 Msa0081440:intron 40.0%
!!! GGTTGTTTTATTTGTGCAGG+TGG - chr1_2:59968227-59968246 Msa0081440:intron 40.0%
AACACAAATCTAGGTGCATC+AGG + chr1_2:59968288-59968307 None:intergenic 40.0%
ATGCACCTAGATTTGTGTTG+TGG - chr1_2:59968289-59968308 Msa0081440:CDS 40.0%
CCATTCCACAACACAAATCT+AGG + chr1_2:59968297-59968316 None:intergenic 40.0%
CCTAGATTTGTGTTGTGGAA+TGG - chr1_2:59968294-59968313 Msa0081440:CDS 40.0%
TGTTGTGGAATGGGAAATTG+AGG - chr1_2:59968304-59968323 Msa0081440:CDS 40.0%
AAAAGAAAACACACTGGAGG+AGG + chr1_2:59968426-59968445 None:intergenic 40.0%
GGGATCAAAAGAAAACACAC+TGG + chr1_2:59968432-59968451 None:intergenic 40.0%
ACTGGCAGGATAAATAATGC+AGG - chr1_2:59968497-59968516 Msa0081440:intron 40.0%
TATCAGGCGTTCAAAAACCT+CGG + chr1_2:59968619-59968638 None:intergenic 40.0%
CTGAACAAAAAGGCTCTATC+AGG + chr1_2:59968635-59968654 None:intergenic 40.0%
! CTGATAGAGCCTTTTTGTTC+AGG - chr1_2:59968633-59968652 Msa0081440:intron 40.0%
CAGGACAATGAAAAAGTTGG+TGG + chr1_2:59968665-59968684 None:intergenic 40.0%
! CCTGTACTTTTATGTTCTGG+CGG - chr1_2:59968730-59968749 Msa0081440:intron 40.0%
TCAGTTCTTGGCGAATGAAA+TGG - chr1_2:59968792-59968811 Msa0081440:intron 40.0%
!!! AGTTTTTAAGAGACGGGTTG+GGG + chr1_2:59968897-59968916 None:intergenic 40.0%
!! CAGTTTTTAAGAGACGGGTT+GGG + chr1_2:59968898-59968917 None:intergenic 40.0%
!! TCAGTTTTTAAGAGACGGGT+TGG + chr1_2:59968899-59968918 None:intergenic 40.0%
! GCTTGAGCTATGTGTGATTT+TGG - chr1_2:59969096-59969115 Msa0081440:intron 40.0%
! AACAAATGAAAAGGAGCGCA+AGG + chr1_2:59969183-59969202 None:intergenic 40.0%
!!! GGTCTCTGTAGTTTTTTTCG+AGG + chr1_2:59969520-59969539 None:intergenic 40.0%
TCATATACAGGTGTCTATGC+CGG - chr1_2:59969767-59969786 Msa0081440:intron 40.0%
AATGGTGGTAGCATTATTGG+TGG - chr1_2:59969848-59969867 Msa0081440:CDS 40.0%
TCTCTCCTGTATTGCTTTGA+AGG + chr1_2:59969876-59969895 None:intergenic 40.0%
GTCAAACTGTTGGATCATTC+CGG - chr1_2:59970025-59970044 Msa0081440:intron 40.0%
AGAAATTGCGTTTGGCAACA+TGG + chr1_2:59970061-59970080 None:intergenic 40.0%
TACCTAGCAGAAATTGCGTT+TGG + chr1_2:59970069-59970088 None:intergenic 40.0%
TGTTTCACCAGTATTCACGT+TGG - chr1_2:59970119-59970138 Msa0081440:intron 40.0%
TTACAGGAACACGATTCACT+AGG + chr1_2:59970152-59970171 None:intergenic 40.0%
CAAAGAAACAACTCCTTCTG+GGG + chr1_2:59970269-59970288 None:intergenic 40.0%
GCAAAGAAACAACTCCTTCT+GGG + chr1_2:59970270-59970289 None:intergenic 40.0%
TGCAAAGAAACAACTCCTTC+TGG + chr1_2:59970271-59970290 None:intergenic 40.0%
CAGTCAGGCACAAATAAACA+AGG + chr1_2:59970933-59970952 None:intergenic 40.0%
GTTATGTAGTTGTAGTGCAG+TGG - chr1_2:59971002-59971021 Msa0081440:intron 40.0%
GCTATGTAGGATCTAAGGAA+TGG + chr1_2:59971086-59971105 None:intergenic 40.0%
CTTCTGCTATGTAGGATCTA+AGG + chr1_2:59971091-59971110 None:intergenic 40.0%
GGTTGTTTACTTCAAAGCCA+GGG - chr1_2:59971138-59971157 Msa0081440:CDS 40.0%
AGTCGCCATCATATAAGTTG+AGG - chr1_2:59971277-59971296 Msa0081440:intron 40.0%
! GGCTTCTTTTGGATAGGAAA+TGG + chr1_2:59971394-59971413 None:intergenic 40.0%
! CTTGATAGATGGTGAGTTGA+AGG - chr1_2:59971428-59971447 Msa0081440:CDS 40.0%
! GATTTGGTCAATTGCATCCA+CGG - chr1_2:59971451-59971470 Msa0081440:intron 40.0%
TACCTAATGTTTGCACTCCT+TGG + chr1_2:59971479-59971498 None:intergenic 40.0%
TAGTCGTTCTTTACTATCCC+TGG + chr1_2:59971880-59971899 None:intergenic 40.0%
!! CTTCCATAGAAGAGTACTAC+AGG - chr1_2:59972033-59972052 Msa0081440:intron 40.0%
! CATCATGTCTTGATGATTGG+TGG - chr1_2:59972070-59972089 Msa0081440:intron 40.0%
! TCTTGATGATTGGTGGTTCT+GGG - chr1_2:59972077-59972096 Msa0081440:intron 40.0%
ACAATTGGATCCTGAGCATT+TGG + chr1_2:59972309-59972328 None:intergenic 40.0%
! TGCTCAGGATCCAATTGTTT+TGG - chr1_2:59972311-59972330 Msa0081440:CDS 40.0%
! GCTCAGGATCCAATTGTTTT+GGG - chr1_2:59972312-59972331 Msa0081440:CDS 40.0%
!! CTCAGGATCCAATTGTTTTG+GGG - chr1_2:59972313-59972332 Msa0081440:CDS 40.0%
!!! TCAGGATCCAATTGTTTTGG+GGG - chr1_2:59972314-59972333 Msa0081440:CDS 40.0%
ACTCTAACCCCCAAAACAAT+TGG + chr1_2:59972324-59972343 None:intergenic 40.0%
AAGAACTGTGGAATAGCTTG+AGG + chr1_2:59972351-59972370 None:intergenic 40.0%
GCTATTCCACAGTTCTTAGT+TGG - chr1_2:59972354-59972373 Msa0081440:CDS 40.0%
AGATGTCCAACTAAGAACTG+TGG + chr1_2:59972363-59972382 None:intergenic 40.0%
!! TTATTGTGTTAGGTTCTGGG+TGG - chr1_2:59972590-59972609 Msa0081440:CDS 40.0%
AAAATCTACAAAATGGGGGG+TGG + chr1_2:59972679-59972698 None:intergenic 40.0%
! GTTTGCTTGCCACTTGCAAT+TGG + chr1_2:59966948-59966967 None:intergenic 45.0%
TGGCAAGCAAACACAGACAT+TGG - chr1_2:59966956-59966975 Msa0081440:three_prime_UTR 45.0%
TGAAGGTGGAGAAAGAAGGA+GGG + chr1_2:59967046-59967065 None:intergenic 45.0%
GAAGAAGGTGAGTGTAACCA+TGG + chr1_2:59967073-59967092 None:intergenic 45.0%
TTGAATTGGAGGAGGGGAAA+GGG + chr1_2:59967134-59967153 None:intergenic 45.0%
TTTGAATTGGAGGAGGGGAA+AGG + chr1_2:59967135-59967154 None:intergenic 45.0%
!! CAGTGGACTATGTATTGCTC+AGG - chr1_2:59967311-59967330 Msa0081440:CDS 45.0%
CCTCGGTAACAACAACATTG+GGG + chr1_2:59967365-59967384 None:intergenic 45.0%
GCCTCGGTAACAACAACATT+GGG + chr1_2:59967366-59967385 None:intergenic 45.0%
AAGAAACCCATCTCTCTCCA+CGG + chr1_2:59967418-59967437 None:intergenic 45.0%
! TGGAGAGAGATGGGTTTCTT+TGG - chr1_2:59967418-59967437 Msa0081440:CDS 45.0%
! GGAGAGAGATGGGTTTCTTT+GGG - chr1_2:59967419-59967438 Msa0081440:CDS 45.0%
! GATGGGTTTCTTTGGGAAGA+AGG - chr1_2:59967426-59967445 Msa0081440:CDS 45.0%
ATGGTGAGCATAGGATCAGA+AGG + chr1_2:59967468-59967487 None:intergenic 45.0%
TTCTGATCCTATGCTCACCA+TGG - chr1_2:59967467-59967486 Msa0081440:intron 45.0%
GTAGATAAGCTAGCCGATAG+CGG - chr1_2:59967726-59967745 Msa0081440:intron 45.0%
!! TAGCCGATAGCGGATAAACT+AGG - chr1_2:59967736-59967755 Msa0081440:intron 45.0%
TTATTTGTGCAGGTGGACAG+TGG - chr1_2:59968234-59968253 Msa0081440:intron 45.0%
!! TGAGTATTGGTGGCAAGATC+AGG - chr1_2:59968370-59968389 Msa0081440:CDS 45.0%
!! GAGTATTGGTGGCAAGATCA+GGG - chr1_2:59968371-59968390 Msa0081440:CDS 45.0%
AGTTCGTGCGTCGAAATCTT+GGG - chr1_2:59968592-59968611 Msa0081440:intron 45.0%
!! TGGCTCTGACCTGAACAAAA+AGG + chr1_2:59968645-59968664 None:intergenic 45.0%
AGTACAGGTAGTTGGCTGAA+AGG + chr1_2:59968718-59968737 None:intergenic 45.0%
! CCGCCAGAACATAAAAGTAC+AGG + chr1_2:59968733-59968752 None:intergenic 45.0%
!!! GTTTTTAAGAGACGGGTTGG+GGG + chr1_2:59968896-59968915 None:intergenic 45.0%
! GAAGTAAGCTTGTCGCTTCT+TGG + chr1_2:59969661-59969680 None:intergenic 45.0%
!! AAGCAGCTTTTGGGAAAGTG+TGG - chr1_2:59969813-59969832 Msa0081440:CDS 45.0%
TGGAGCCTTCAAAGCAATAC+AGG - chr1_2:59969868-59969887 Msa0081440:CDS 45.0%
!! TATTTTTACGGATCACGGGG+TGG + chr1_2:59969914-59969933 None:intergenic 45.0%
! ACAGTTTGACCCTTTGGCTT+TGG + chr1_2:59970015-59970034 None:intergenic 45.0%
AAGCCAAAGGGTCAAACTGT+TGG - chr1_2:59970015-59970034 Msa0081440:intron 45.0%
GATCCAACAGTTTGACCCTT+TGG + chr1_2:59970021-59970040 None:intergenic 45.0%
AACTGTTGGATCATTCCGGA+AGG - chr1_2:59970029-59970048 Msa0081440:intron 45.0%
ACTGTTGGATCATTCCGGAA+GGG - chr1_2:59970030-59970049 Msa0081440:intron 45.0%
TGCCAAACGCAATTTCTGCT+AGG - chr1_2:59970064-59970083 Msa0081440:intron 45.0%
AACATCGCCAACGTGAATAC+TGG + chr1_2:59970129-59970148 None:intergenic 45.0%
ATCGTGTTCCTGTAACCTGT+TGG - chr1_2:59970157-59970176 Msa0081440:intron 45.0%
TTGTTACCTAACCTGCCAAC+AGG + chr1_2:59970175-59970194 None:intergenic 45.0%
TGTTGGCAGGTTAGGTAACA+AGG - chr1_2:59970174-59970193 Msa0081440:intron 45.0%
TTGACGTATGAAACCCCAGA+AGG - chr1_2:59970253-59970272 Msa0081440:intron 45.0%
ACTAGCAACATGGGAAGGAA+TGG + chr1_2:59970314-59970333 None:intergenic 45.0%
!! AATGGACTAGCAACATGGGA+AGG + chr1_2:59970319-59970338 None:intergenic 45.0%
!! CAGCAATGGACTAGCAACAT+GGG + chr1_2:59970323-59970342 None:intergenic 45.0%
AGGAATGGCCGGAAACATTA+CGG + chr1_2:59971071-59971090 None:intergenic 45.0%
TGTAGGATCTAAGGAATGGC+CGG + chr1_2:59971082-59971101 None:intergenic 45.0%
CGGTTGTTTACTTCAAAGCC+AGG - chr1_2:59971137-59971156 Msa0081440:CDS 45.0%
TACTTCAAAGCCAGGGTTTC+AGG - chr1_2:59971145-59971164 Msa0081440:intron 45.0%
CATCACATCCCTTGTGAGAT+AGG - chr1_2:59971175-59971194 Msa0081440:intron 45.0%
ATCCCTTGTGAGATAGGCTT+TGG - chr1_2:59971181-59971200 Msa0081440:intron 45.0%
AGCCAAAGCCTATCTCACAA+GGG + chr1_2:59971186-59971205 None:intergenic 45.0%
AAGCCAAAGCCTATCTCACA+AGG + chr1_2:59971187-59971206 None:intergenic 45.0%
GCGACTATCATGCCAGAAAT+TGG + chr1_2:59971263-59971282 None:intergenic 45.0%
! GATGGTGAGTTGAAGGGATT+TGG - chr1_2:59971435-59971454 Msa0081440:CDS 45.0%
! AGCCAAGGAGTGCAAACATT+AGG - chr1_2:59971474-59971493 Msa0081440:intron 45.0%
AATCGCGTGGCAACTTAAAG+TGG + chr1_2:59971539-59971558 None:intergenic 45.0%
TTCAAGAGTAGAACCCTTCC+AGG + chr1_2:59971701-59971720 None:intergenic 45.0%
GGAGTTTCCAACAACAACGA+AGG + chr1_2:59971859-59971878 None:intergenic 45.0%
! TCGTTGTTGTTGGAAACTCC+AGG - chr1_2:59971859-59971878 Msa0081440:intron 45.0%
! CGTTGTTGTTGGAAACTCCA+GGG - chr1_2:59971860-59971879 Msa0081440:intron 45.0%
GACATGATGAAGCAGTACAG+CGG + chr1_2:59972059-59972078 None:intergenic 45.0%
! GTCTTGATGATTGGTGGTTC+TGG - chr1_2:59972076-59972095 Msa0081440:intron 45.0%
!!! GATTGGTGGTTCTGGGTTTT+AGG - chr1_2:59972084-59972103 Msa0081440:intron 45.0%
!!! TTGTTTTGGGGGTTAGAGTG+TGG - chr1_2:59972325-59972344 Msa0081440:CDS 45.0%
!! TATGTGTCTGGTGTTGCCTT+GGG - chr1_2:59972453-59972472 Msa0081440:CDS 45.0%
TACTTCAGCTGCTATCTCGT+AGG + chr1_2:59972496-59972515 None:intergenic 45.0%
! TGCAGAGAGTGTACAAGTAG+CGG - chr1_2:59972529-59972548 Msa0081440:CDS 45.0%
!!! TTTTCTAAAAAAAAAAAATA+TGG - chr1_2:59968955-59968974 Msa0081440:intron 5.0%
!!! TTTTAAATATTAATCAAATA+TGG + chr1_2:59969481-59969500 None:intergenic 5.0%
GTGAAGGTGGAGAAAGAAGG+AGG + chr1_2:59967047-59967066 None:intergenic 50.0%
AAGGTGAGTGTAACCATGGC+GGG + chr1_2:59967069-59967088 None:intergenic 50.0%
GAAGGTGAGTGTAACCATGG+CGG + chr1_2:59967070-59967089 None:intergenic 50.0%
GGAAAGGGGAATGGAGATGA+GGG + chr1_2:59967119-59967138 None:intergenic 50.0%
TGAATTGGAGGAGGGGAAAG+GGG + chr1_2:59967133-59967152 None:intergenic 50.0%
ATTCCTCCGCAATGGAGCAA+CGG + chr1_2:59967206-59967225 None:intergenic 50.0%
!!! GGTGGTTTTAGTCGGAGATG+CGG + chr1_2:59967232-59967251 None:intergenic 50.0%
ACCAACAACCACACAGTCGA+CGG + chr1_2:59967283-59967302 None:intergenic 50.0%
! CCCCAATGTTGTTGTTACCG+AGG - chr1_2:59967362-59967381 Msa0081440:CDS 50.0%
CGCCTCGGTAACAACAACAT+TGG + chr1_2:59967367-59967386 None:intergenic 50.0%
ACCAACTCGATCTTTCGCCT+CGG + chr1_2:59967382-59967401 None:intergenic 50.0%
!! AGGCGAAAGATCGAGTTGGT+GGG - chr1_2:59967382-59967401 Msa0081440:CDS 50.0%
TGATCCTATGCTCACCATGG+TGG - chr1_2:59967470-59967489 Msa0081440:intron 50.0%
CATACCACCATGGTGAGCAT+AGG + chr1_2:59967477-59967496 None:intergenic 50.0%
CGTAATGTGGCGCATGCAAT+TGG - chr1_2:59967533-59967552 Msa0081440:intron 50.0%
GTGGAATGGGAAATTGAGGC+CGG - chr1_2:59968308-59968327 Msa0081440:CDS 50.0%
!! GGCAAATCAGTTGGCTTTCC+CGG + chr1_2:59968336-59968355 None:intergenic 50.0%
GAAAACACACTGGAGGAGGA+GGG + chr1_2:59968422-59968441 None:intergenic 50.0%
AGAAAACACACTGGAGGAGG+AGG + chr1_2:59968423-59968442 None:intergenic 50.0%
GTGACAGGGTCATGAGGAAT+CGG - chr1_2:59968563-59968582 Msa0081440:intron 50.0%
GAGTTCGTGCGTCGAAATCT+TGG - chr1_2:59968591-59968610 Msa0081440:intron 50.0%
GTTCGTGCGTCGAAATCTTG+GGG - chr1_2:59968593-59968612 Msa0081440:intron 50.0%
TCAAATCCATCGTTGAGCGC+CGG - chr1_2:59969396-59969415 Msa0081440:CDS 50.0%
AAATATCCGGCGCTCAACGA+TGG + chr1_2:59969405-59969424 None:intergenic 50.0%
!! CAGCTTTTGGGAAAGTGTGG+AGG - chr1_2:59969816-59969835 Msa0081440:CDS 50.0%
GTGTGGAGGCTCGAACAAAA+TGG - chr1_2:59969830-59969849 Msa0081440:CDS 50.0%
TGGAGGCTCGAACAAAATGG+TGG - chr1_2:59969833-59969852 Msa0081440:CDS 50.0%
GCAACATGGTAAGTCCCTTC+CGG + chr1_2:59970047-59970066 None:intergenic 50.0%
TGTTCCTGTAACCTGTTGGC+AGG - chr1_2:59970161-59970180 Msa0081440:intron 50.0%
CTAACCTGCCAACAGGTTAC+AGG + chr1_2:59970168-59970187 None:intergenic 50.0%
CTGTAACCTGTTGGCAGGTT+AGG - chr1_2:59970166-59970185 Msa0081440:intron 50.0%
!! GCAGCAATGGACTAGCAACA+TGG + chr1_2:59970324-59970343 None:intergenic 50.0%
ACAGACAGTGGTTGCAGCAA+TGG + chr1_2:59970337-59970356 None:intergenic 50.0%
ACGTCTTGGTACCTTACTGC+AGG - chr1_2:59970470-59970489 Msa0081440:intron 50.0%
TGGCCTACTGCAAGAGCTTA+TGG - chr1_2:59970807-59970826 Msa0081440:intron 50.0%
CAGCCATAAGCTCTTGCAGT+AGG + chr1_2:59970813-59970832 None:intergenic 50.0%
GGAATGGCCGGAAACATTAC+GGG + chr1_2:59971070-59971089 None:intergenic 50.0%
AAAGCCAGGGTTTCAGGATC+AGG - chr1_2:59971151-59971170 Msa0081440:intron 50.0%
ATGTCCTGATCCTGAAACCC+TGG + chr1_2:59971158-59971177 None:intergenic 50.0%
GAAATGGAAACTGCCGCAAC+TGG + chr1_2:59971378-59971397 None:intergenic 50.0%
TGGTGCTCGGTTAGGGAAAA+GGG + chr1_2:59971678-59971697 None:intergenic 50.0%
AAGAGTAGAACCCTTCCAGG+TGG + chr1_2:59971698-59971717 None:intergenic 50.0%
ATTGGAGGGGCTACCAATTC+TGG - chr1_2:59971725-59971744 Msa0081440:intron 50.0%
TTGGAGGGGCTACCAATTCT+GGG - chr1_2:59971726-59971745 Msa0081440:intron 50.0%
CGGCCTGTAGTACTCTTCTA+TGG + chr1_2:59972039-59972058 None:intergenic 50.0%
AAGGAACAGCCCCTCAAATC+CGG + chr1_2:59972424-59972443 None:intergenic 50.0%
GATTTGAGGGGCTGTTCCTT+GGG - chr1_2:59972424-59972443 Msa0081440:CDS 50.0%
ATTTGAGGGGCTGTTCCTTG+GGG - chr1_2:59972425-59972444 Msa0081440:CDS 50.0%
!! CTATGTGTCTGGTGTTGCCT+TGG - chr1_2:59972452-59972471 Msa0081440:CDS 50.0%
! GTTCTGGGTGGCTTCTGTTA+CGG - chr1_2:59972602-59972621 Msa0081440:CDS 50.0%
TTCTGGGTGGCTTCTGTTAC+GGG - chr1_2:59972603-59972622 Msa0081440:CDS 50.0%
CGGGTGAAGGTGGAGAAAGA+AGG + chr1_2:59967050-59967069 None:intergenic 55.0%
!! AGTGTAACCATGGCGGGTGA+AGG + chr1_2:59967063-59967082 None:intergenic 55.0%
GGTTTGAGAGGGTGGGAAGA+AGG + chr1_2:59967088-59967107 None:intergenic 55.0%
GGAGAAGGGTTTGAGAGGGT+GGG + chr1_2:59967095-59967114 None:intergenic 55.0%
ATGGAGATGAGGGCGGAGAA+GGG + chr1_2:59967109-59967128 None:intergenic 55.0%
AATGGAGATGAGGGCGGAGA+AGG + chr1_2:59967110-59967129 None:intergenic 55.0%
AAGGGGAATGGAGATGAGGG+CGG + chr1_2:59967116-59967135 None:intergenic 55.0%
GGGAAAGGGGAATGGAGATG+AGG + chr1_2:59967120-59967139 None:intergenic 55.0%
GGAGACGGAGAATGGGGTTA+TGG + chr1_2:59967185-59967204 None:intergenic 55.0%
AGCAACGGAGACGGAGAATG+GGG + chr1_2:59967191-59967210 None:intergenic 55.0%
GAGCAACGGAGACGGAGAAT+GGG + chr1_2:59967192-59967211 None:intergenic 55.0%
!! GGTTTTAGTCGGAGATGCGG+TGG + chr1_2:59967229-59967248 None:intergenic 55.0%
AACCACACAGTCGACGGATG+AGG + chr1_2:59967277-59967296 None:intergenic 55.0%
! TCCGTCGACTGTGTGGTTGT+TGG - chr1_2:59967279-59967298 Msa0081440:CDS 55.0%
GTCGACTGTGTGGTTGTTGG+TGG - chr1_2:59967282-59967301 Msa0081440:CDS 55.0%
! GACTGTGTGGTTGTTGGTGG+TGG - chr1_2:59967285-59967304 Msa0081440:CDS 55.0%
!! GTTGTTGGTGGTGGCATCAG+TGG - chr1_2:59967294-59967313 Msa0081440:CDS 55.0%
ACCGAGGCGAAAGATCGAGT+TGG - chr1_2:59967378-59967397 Msa0081440:CDS 55.0%
!! GAGGCGAAAGATCGAGTTGG+TGG - chr1_2:59967381-59967400 Msa0081440:CDS 55.0%
TGACACCGCCTCACACATGT+TGG - chr1_2:59968192-59968211 Msa0081440:intron 55.0%
GCAGGTGGACAGTGGTTTGA+AGG - chr1_2:59968242-59968261 Msa0081440:CDS 55.0%
! ATTGGTGGCAAGATCAGGGC+TGG - chr1_2:59968375-59968394 Msa0081440:CDS 55.0%
ACGAAGGTGACAGGGTCATG+AGG - chr1_2:59968557-59968576 Msa0081440:intron 55.0%
!! TTAAGAGACGGGTTGGGGGA+TGG + chr1_2:59968892-59968911 None:intergenic 55.0%
TAGGCGTCTGCCAAAGCCAA+AGG - chr1_2:59970002-59970021 Msa0081440:intron 55.0%
AGGCGTCTGCCAAAGCCAAA+GGG - chr1_2:59970003-59970022 Msa0081440:intron 55.0%
! GAAAGTGCATCTGCAGCAGC+AGG + chr1_2:59971339-59971358 None:intergenic 55.0%
ATGGAAACTGCCGCAACTGG+AGG + chr1_2:59971375-59971394 None:intergenic 55.0%
CAATTGCATCCACGGAGCCA+AGG - chr1_2:59971459-59971478 Msa0081440:intron 55.0%
GTGGTGCTCGGTTAGGGAAA+AGG + chr1_2:59971679-59971698 None:intergenic 55.0%
TTCCAGGTGGTGCTCGGTTA+GGG + chr1_2:59971685-59971704 None:intergenic 55.0%
TAACCGAGCACCACCTGGAA+GGG - chr1_2:59971685-59971704 Msa0081440:intron 55.0%
GGATTTGAGGGGCTGTTCCT+TGG - chr1_2:59972423-59972442 Msa0081440:CDS 55.0%
TTTGAGGGGCTGTTCCTTGG+GGG - chr1_2:59972426-59972445 Msa0081440:CDS 55.0%
CAGACACATAGTTGCCCCCA+AGG + chr1_2:59972443-59972462 None:intergenic 55.0%
CTTGGGGGCAACTATGTGTC+TGG - chr1_2:59972441-59972460 Msa0081440:CDS 55.0%
!! TGTCTGGTGTTGCCTTGGGA+AGG - chr1_2:59972457-59972476 Msa0081440:CDS 55.0%
! TGCCTTGGGAAGGTGTGTTG+AGG - chr1_2:59972467-59972486 Msa0081440:CDS 55.0%
! GCCTTGGGAAGGTGTGTTGA+GGG - chr1_2:59972468-59972487 Msa0081440:CDS 55.0%
TCCCTCAACACACCTTCCCA+AGG + chr1_2:59972472-59972491 None:intergenic 55.0%
TTCTCCACCTTCACCCGCCA+TGG - chr1_2:59967053-59967072 Msa0081440:three_prime_UTR 60.0%
!! GTAACCATGGCGGGTGAAGG+TGG + chr1_2:59967060-59967079 None:intergenic 60.0%
CGGAGAAGGGTTTGAGAGGG+TGG + chr1_2:59967096-59967115 None:intergenic 60.0%
GGGCGGAGAAGGGTTTGAGA+GGG + chr1_2:59967099-59967118 None:intergenic 60.0%
AGGGCGGAGAAGGGTTTGAG+AGG + chr1_2:59967100-59967119 None:intergenic 60.0%
TGGAGGAGGGGAAAGGGGAA+TGG + chr1_2:59967128-59967147 None:intergenic 60.0%
GGAGCAACGGAGACGGAGAA+TGG + chr1_2:59967193-59967212 None:intergenic 60.0%
CCGCAATGGAGCAACGGAGA+CGG + chr1_2:59967200-59967219 None:intergenic 60.0%
CCGTCTCCGTTGCTCCATTG+CGG - chr1_2:59967197-59967216 Msa0081440:CDS 60.0%
TCTCCGTTGCTCCATTGCGG+AGG - chr1_2:59967200-59967219 Msa0081440:CDS 60.0%
! TGCGGTGGATTCCTCCGCAA+TGG + chr1_2:59967214-59967233 None:intergenic 60.0%
GTCGACGGATGAGGACTCTC+CGG + chr1_2:59967268-59967287 None:intergenic 60.0%
! GTCCTCATCCGTCGACTGTG+TGG - chr1_2:59967272-59967291 Msa0081440:CDS 60.0%
TGGGAAATTGAGGCCGGTGC+CGG - chr1_2:59968314-59968333 Msa0081440:CDS 60.0%
!! TCAGTTGGCTTTCCCGGCAC+CGG + chr1_2:59968330-59968349 None:intergenic 60.0%
!! GGCAAGATCAGGGCTGGCTT+TGG - chr1_2:59968381-59968400 Msa0081440:intron 60.0%
!! AGGGCTGGCTTTGGAGCACT+TGG - chr1_2:59968390-59968409 Msa0081440:intron 60.0%
GTTTGCACTCCTTGGCTCCG+TGG + chr1_2:59971471-59971490 None:intergenic 60.0%
TTCCCTAACCGAGCACCACC+TGG - chr1_2:59971680-59971699 Msa0081440:intron 60.0%
CTTCCAGGTGGTGCTCGGTT+AGG + chr1_2:59971686-59971705 None:intergenic 60.0%
CTAACCGAGCACCACCTGGA+AGG - chr1_2:59971684-59971703 Msa0081440:intron 60.0%
GAACCCTTCCAGGTGGTGCT+CGG + chr1_2:59971691-59971710 None:intergenic 60.0%
GGGAAATTGAGGCCGGTGCC+GGG - chr1_2:59968315-59968334 Msa0081440:CDS 65.0%
GCGTCGAAATCTTGGGGCCG+AGG - chr1_2:59968599-59968618 Msa0081440:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59966938 59972792 59966938 ID=Msa0081440;Name=Msa0081440
chr1_2 mRNA 59966938 59972792 59966938 ID=Msa0081440-mRNA-1;Parent=Msa0081440;Name=Msa0081440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=134|0.87|0.88|1|1|1|9|244|545
chr1_2 exon 59966938 59967481 59966938 ID=Msa0081440-mRNA-1:exon:19519;Parent=Msa0081440-mRNA-1
chr1_2 exon 59967970 59968073 59967970 ID=Msa0081440-mRNA-1:exon:19518;Parent=Msa0081440-mRNA-1
chr1_2 exon 59968235 59968394 59968235 ID=Msa0081440-mRNA-1:exon:19517;Parent=Msa0081440-mRNA-1
chr1_2 exon 59969376 59969547 59969376 ID=Msa0081440-mRNA-1:exon:19516;Parent=Msa0081440-mRNA-1
chr1_2 exon 59969645 59969725 59969645 ID=Msa0081440-mRNA-1:exon:19515;Parent=Msa0081440-mRNA-1
chr1_2 exon 59969806 59969953 59969806 ID=Msa0081440-mRNA-1:exon:19514;Parent=Msa0081440-mRNA-1
chr1_2 exon 59971076 59971160 59971076 ID=Msa0081440-mRNA-1:exon:19513;Parent=Msa0081440-mRNA-1
chr1_2 exon 59971299 59971466 59971299 ID=Msa0081440-mRNA-1:exon:19512;Parent=Msa0081440-mRNA-1
chr1_2 exon 59972239 59972792 59972239 ID=Msa0081440-mRNA-1:exon:19511;Parent=Msa0081440-mRNA-1
chr1_2 five_prime_UTR 59972659 59972792 59972659 ID=Msa0081440-mRNA-1:five_prime_utr;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59972239 59972658 59972239 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59971299 59971466 59971299 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59971076 59971160 59971076 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59969806 59969953 59969806 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59969645 59969725 59969645 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59969376 59969547 59969376 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59968235 59968394 59968235 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59967970 59968073 59967970 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 CDS 59967182 59967481 59967182 ID=Msa0081440-mRNA-1:cds;Parent=Msa0081440-mRNA-1
chr1_2 three_prime_UTR 59966938 59967181 59966938 ID=Msa0081440-mRNA-1:three_prime_utr;Parent=Msa0081440-mRNA-1
Gene Sequence

>Msa0081440

ATGGTTACACTCACCTTCTTCCCACCCTCTCAAACCCTTCTCCGCCCTCATCTCCATTCCCCTTTCCCCTCCTCCAATTCAAAATCAAAATTCATTCGCAATCGCAGTCACCATAACCCCATTCTCCGTCTCCGTTGCTCCATTGCGGAGGAATCCACCGCATCTCCGACTAAAACCACCTCAAAATCAAATTCCGGAGAGTCCTCATCCGTCGACTGTGTGGTTGTTGGTGGTGGCATCAGTGGACTATGTATTGCTCAGGCTCTTTCTACAAAGCATGCTGATGGTGTCCCCAATGTTGTTGTTACCGAGGCGAAAGATCGAGTTGGTGGGAATATTATTACCGTGGAGAGAGATGGGTTTCTTTGGGAAGAAGGTCCTAATAGTTTTCAACCTTCTGATCCTATGCTCACCATGGTGGACGATCTTGTTTTGGGTGATCCTGATGCACCTAGATTTGTGTTGTGGAATGGGAAATTGAGGCCGGTGCCGGGAAAGCCAACTGATTTGCCTTTCTTTGACTTAATGAGTATTGGTGGCAAGATCAGGGCTGGCTTTGGAGCACTTGGAATTCGCCCTCCTCCTCCAGGTCATGAGGAATCGGTTGAAGAGTTCGTGCGTCGAAATCTTGGGGCCGAGGTTTTTGAACGCCTGATAGAGCCTTTTTGTTCAGGTGTCTATGCCGGCGATCCTTCAAAATTAAGTATGAAAGCAGCTTTTGGGAAAGTGTGGAGGCTCGAACAAAATGGTGGTAGCATTATTGGTGGAGCCTTCAAAGCAATACAGGAGAGAAATAAAGCTTCAAAACCACCCCGTGATCCGCGTCTGCCAAAGCCAAAGGGTCAAACTGTTGGATCATTCCGGAAGGGACTTACCATGTTGCCAAACGCAATTTCTGCTAGGTTAGGTAACAAGGTGAAGTTATCTTGGAAGCTTTTAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACGTATGAAACCCCAGAAGGAGTTGTTTCTTTGCAAAGCAAGACTGTTATCATGACCATTCCTTCCCATGTTGCTAGTCCATTGCTGCAACCACTGTCTCCTGCTGCTGCAGATGCACTTTCAAAGTTTTATTATCCTCCAGTTGCGGCAGTTTCCATTTCCTATCCAAAAGAAGCCATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGATTTGGTCAATTGCATCCACGGAGCCAAGGAGTGCAAACATTAGGAACTATATACAGCTCATCCCTTTTCCCTAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGGGCTACCAATTCTGGGATTTTATCAAAGACGGAGGGTGAACTTGTTGAAGCAGTTGACCGAGATTTGAGAAAAATCCTTATAAATCCAAATGCTCAGGATCCAATTGTTTTGGGGGTTAGAGTGTGGCCTCAAGCTATTCCACAGTTCTTAGTTGGACATCTTGATCTTCTAGATGCTGCTAAAGTTTCTCTTAAAAATACCGGATTTGAGGGGCTGTTCCTTGGGGGCAACTATGTGTCTGGTGTTGCCTTGGGAAGGTGTGTTGAGGGAGCCTACGAGATAGCAGCTGAAGTAAATGATTTTCTCTTGCAGAGAGTGTACAAGTAG
Protein sequence

>Msa0081440

MVTLTFFPPSQTLLRPHLHSPFPSSNSKSKFIRNRSHHNPILRLRCSIAEESTASPTKTTSKSNSGESSSVDCVVVGGGISGLCIAQALSTKHADGVPNVVVTEAKDRVGGNIITVERDGFLWEEGPNSFQPSDPMLTMVDDLVLGDPDAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKIRAGFGALGIRPPPPGHEESVEEFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEQNGGSIIGGAFKAIQERNKASKPPRDPRLPKPKGQTVGSFRKGLTMLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASPLLQPLSPAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVQTLGTIYSSSLFPNRAPPGRVLLLNYIGGATNSGILSKTEGELVEAVDRDLRKILINPNAQDPIVLGVRVWPQAIPQFLVGHLDLLDAAKVSLKNTGFEGLFLGGNYVSGVALGRCVEGAYEIAAEVNDFLLQRVYK*