AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411930 MtrunA17_Chr4g0004251 95.686 255 11 0 1 255 1 255 4.02e-178 489
Msa1411930 MtrunA17_Chr2g0323811 32.547 212 134 3 43 251 55 260 2.66e-37 132
Msa1411930 MtrunA17_Chr5g0407481 34.351 131 83 1 124 251 2 132 1.52e-22 90.1
Msa1411930 MtrunA17_Chr2g0323801 31.538 130 82 2 124 251 2 126 1.14e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411930 AT1G04940.1 63.750 240 80 2 22 255 36 274 1.78e-105 307
Msa1411930 AT1G04945.3 60.633 221 80 2 22 236 36 255 6.78e-86 268
Msa1411930 AT4G03320.1 35.000 220 130 5 38 251 59 271 3.67e-40 140

Find 80 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTGGAATGCATTTC+TGG 0.102228 tig0023857:+29323 Msa1411930:CDS
TTCACCCTTCATATGGTATT+TGG 0.132090 tig0023857:-29450 None:intergenic
TCTCAAGTTTCCGAAGTTTA+TGG 0.173905 tig0023857:+26878 Msa1411930:CDS
GATGCCACTGGGGTTCTATT+GGG 0.221927 tig0023857:+29300 Msa1411930:CDS
GGATGCCACTGGGGTTCTAT+TGG 0.233429 tig0023857:+29299 Msa1411930:CDS
TCAAATTTGTGTCATTATTC+AGG 0.234665 tig0023857:+26651 Msa1411930:five_prime_UTR
GGGTTCTATTGGGGTAAAAT+TGG 0.263490 tig0023857:+29310 Msa1411930:CDS
GAGATAGCCTTGCAAGTTAC+AGG 0.289946 tig0023857:+29262 Msa1411930:CDS
CTTCGCTGCGCAAGTCTTGT+AGG 0.317793 tig0023857:+28915 Msa1411930:CDS
CAAACTGATTAGCCATTCTA+TGG 0.327158 tig0023857:-29543 None:intergenic
CTCAAGTTTCCGAAGTTTAT+GGG 0.327570 tig0023857:+26879 Msa1411930:CDS
TGCGTTAGGTGTGCCCTTAC+TGG 0.339865 tig0023857:+29385 Msa1411930:CDS
ACTAGTGATTCAAGCATGAT+TGG 0.342277 tig0023857:+26787 Msa1411930:intron
ATCAAATTTATCTGTATTCT+CGG 0.358270 tig0023857:+29632 Msa1411930:three_prime_UTR
GGCACACCTAACGCACTCTA+TGG 0.372183 tig0023857:-29377 None:intergenic
CTATGGAAGTAAAGAGATAA+AGG 0.374679 tig0023857:-29360 None:intergenic
AACTCGAATGCCTCAATAAA+CGG 0.375295 tig0023857:-29094 None:intergenic
TACATATTTCACCCTTCATA+TGG 0.376846 tig0023857:-29457 None:intergenic
TGTGAGCCGTTGGATGCCAC+TGG 0.406570 tig0023857:+29288 Msa1411930:CDS
AGTGTTCTCCACCACCATCT+TGG 0.422947 tig0023857:-29001 None:intergenic
TTACTTCCATAGAGTGCGTT+AGG 0.425451 tig0023857:+29371 Msa1411930:CDS
TTATCTCTTGCCTATCCATC+AGG 0.444896 tig0023857:+29036 Msa1411930:CDS
GATGGATAGGCAAGAGATAA+GGG 0.454516 tig0023857:-29033 None:intergenic
CGCTTGTCAAATGCCTGCTA+AGG 0.455039 tig0023857:+26849 Msa1411930:CDS
ATGCCACTGGGGTTCTATTG+GGG 0.470377 tig0023857:+29301 Msa1411930:CDS
GTGAGCCGTTGGATGCCACT+GGG 0.473897 tig0023857:+29289 Msa1411930:CDS
CAATCTTCACCCGTTTATTG+AGG 0.476868 tig0023857:+29084 Msa1411930:CDS
ACTCGAATGCCTCAATAAAC+GGG 0.477425 tig0023857:-29093 None:intergenic
TCAAATTTATCTGTATTCTC+GGG 0.482206 tig0023857:+29633 Msa1411930:three_prime_UTR
TATGCTGCATCACAGACAAA+AGG 0.482262 tig0023857:-29424 None:intergenic
TGATGGATAGGCAAGAGATA+AGG 0.482592 tig0023857:-29034 None:intergenic
TTCGCTGCGCAAGTCTTGTA+GGG 0.489910 tig0023857:+28916 Msa1411930:CDS
TATGAAGGGTGAAATATGTA+AGG 0.493929 tig0023857:+29460 Msa1411930:exon
TATATCCAAATACCATATGA+AGG 0.493979 tig0023857:+29445 Msa1411930:CDS
ATGAAGGAAGGCTCATCTGC+TGG 0.500226 tig0023857:+28950 Msa1411930:CDS
TTCAGATTTCACGTTGCCGT+CGG 0.502375 tig0023857:+29229 Msa1411930:CDS
ATATAACTAAAATGTACTCA+AGG 0.510206 tig0023857:-29605 None:intergenic
TAGGGCCCCTCGAGCAATGA+AGG 0.513500 tig0023857:+28934 Msa1411930:CDS
TGTTAAGCAGAACCATAGAA+TGG 0.514387 tig0023857:+29531 Msa1411930:three_prime_UTR
CAATTGGCAGTCTACCTAGA+TGG 0.514868 tig0023857:+29140 Msa1411930:CDS
GAGCCTTCCTTCATTGCTCG+AGG 0.525595 tig0023857:-28941 None:intergenic
TCAAGCATGATTGGAAATGT+TGG 0.526715 tig0023857:+26796 Msa1411930:exon
TATCCGCATACATACCAGTA+AGG 0.527566 tig0023857:-29399 None:intergenic
AAGGGTGAAATATGTAAGGA+AGG 0.534388 tig0023857:+29464 Msa1411930:exon
GTAACACAAAACAGAACCTT+GGG 0.535984 tig0023857:-26827 None:intergenic
AGCCTTCCTTCATTGCTCGA+GGG 0.536520 tig0023857:-28940 None:intergenic
ATGCTGCATCACAGACAAAA+GGG 0.543856 tig0023857:-29423 None:intergenic
CTACAAGACTTGCGCAGCGA+AGG 0.549633 tig0023857:-28914 None:intergenic
TTACAGGGCTTGTGAGCCGT+TGG 0.554372 tig0023857:+29278 Msa1411930:CDS
TAGCATACATCCACACCTGA+TGG 0.557726 tig0023857:-29051 None:intergenic
CGTAACACAAAACAGAACCT+TGG 0.561329 tig0023857:-26828 None:intergenic
CTTGAGACAGAAACCTTAGC+AGG 0.566926 tig0023857:-26862 None:intergenic
AGATAGCCTTGCAAGTTACA+GGG 0.572582 tig0023857:+29263 Msa1411930:CDS
AAGTATGTCCCCATAAACTT+CGG 0.579692 tig0023857:-26888 None:intergenic
TACATCCACACCTGATGGAT+AGG 0.579710 tig0023857:-29046 None:intergenic
CCAGAAAACCAAGATGGTGG+TGG 0.582114 tig0023857:+28993 Msa1411930:CDS
TATGCTATGAGAGACCATCT+AGG 0.591244 tig0023857:-29154 None:intergenic
CACAAGCCCTGTAACTTGCA+AGG 0.594415 tig0023857:-29269 None:intergenic
TCAAGTTTCCGAAGTTTATG+GGG 0.594717 tig0023857:+26880 Msa1411930:CDS
ACGTGAAATCTGAAGAAATG+AGG 0.595610 tig0023857:-29220 None:intergenic
TTGCGCAGCGAAGGTAACAC+AGG 0.597116 tig0023857:-28905 None:intergenic
TTGCGTATCTTACCATTGTG+AGG 0.599587 tig0023857:+29185 Msa1411930:CDS
GCCTTCCTTCATTGCTCGAG+GGG 0.601540 tig0023857:-28939 None:intergenic
TCTTGCCTATCCATCAGGTG+TGG 0.604602 tig0023857:+29041 Msa1411930:CDS
TATAACTAAAATGTACTCAA+GGG 0.614178 tig0023857:-29604 None:intergenic
GCCCCTCGAGCAATGAAGGA+AGG 0.617175 tig0023857:+28938 Msa1411930:CDS
AATGTTGGCACTATATCCCA+AGG 0.625899 tig0023857:+26811 Msa1411930:CDS
ATATCCAAATACCATATGAA+GGG 0.626189 tig0023857:+29446 Msa1411930:CDS
CGATGACCAGAAAACCAAGA+TGG 0.627736 tig0023857:+28987 Msa1411930:CDS
CTCAAGGGAAAATATCAAAG+AGG 0.636624 tig0023857:-29589 None:intergenic
AGAACCCCAGTGGCATCCAA+CGG 0.641127 tig0023857:-29294 None:intergenic
CCATTGTGAGGAGAAAAGAA+TGG 0.645047 tig0023857:+29197 Msa1411930:CDS
TGCCCTTACTGGTATGTATG+CGG 0.645316 tig0023857:+29396 Msa1411930:CDS
ATCCGCATACATACCAGTAA+GGG 0.651307 tig0023857:-29398 None:intergenic
TGACCAGAAAACCAAGATGG+TGG 0.673799 tig0023857:+28990 Msa1411930:CDS
ACTTTAGAGATTAAACCAAG+AGG 0.685569 tig0023857:+26907 Msa1411930:CDS
TGCGCAGCGAAGGTAACACA+GGG 0.711989 tig0023857:-28904 None:intergenic
TATCTCGATTAACATTCCGA+CGG 0.723472 tig0023857:-29245 None:intergenic
TGAGCCGTTGGATGCCACTG+GGG 0.729430 tig0023857:+29290 Msa1411930:CDS
TTACCCCAATAGAACCCCAG+TGG 0.740833 tig0023857:-29304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAATAATAAAAAAAC+TGG + tig0023857:26753-26772 Msa1411930:intron 10.0%
!!! TTTTGAATAATAAAAAAACT+GGG + tig0023857:26754-26773 Msa1411930:intron 10.0%
!!! TTTTTTTTTCATATGTTTTA+TGG + tig0023857:28080-28099 Msa1411930:intron 10.0%
!!! TTTTTTTTCATATGTTTTAT+GGG + tig0023857:28081-28100 Msa1411930:intron 10.0%
!! AATACAATTCATAGAAAAAT+GGG - tig0023857:26700-26719 None:intergenic 15.0%
!! AAATACAATTCATAGAAAAA+TGG - tig0023857:26701-26720 None:intergenic 15.0%
!! TCAATTTCTCAAATTAATAT+CGG + tig0023857:27179-27198 Msa1411930:intron 15.0%
!! CATAGATATATTAATTAACT+AGG - tig0023857:27819-27838 None:intergenic 15.0%
!! TTTACTAAATATGATACATA+AGG + tig0023857:28243-28262 Msa1411930:intron 15.0%
!! TTACTAAATATGATACATAA+GGG + tig0023857:28244-28263 Msa1411930:intron 15.0%
!! ATAAGTTGTTTATCCAAATA+GGG + tig0023857:27507-27526 Msa1411930:intron 20.0%
!!! CCATTTTCTCAAATTATTAT+CGG + tig0023857:27749-27768 Msa1411930:intron 20.0%
!! ACATACTTTATGTACTAATT+AGG - tig0023857:27908-27927 None:intergenic 20.0%
!! TATTTAGTAAAATTACACCA+AGG - tig0023857:28234-28253 None:intergenic 20.0%
!! TACTAAATATGATACATAAG+GGG + tig0023857:28245-28264 Msa1411930:intron 20.0%
!! CAAAGATAGTAATATTACAT+AGG - tig0023857:28348-28367 None:intergenic 20.0%
!! TATAACTAAAATGTACTCAA+GGG - tig0023857:29607-29626 None:intergenic 20.0%
!! ATATAACTAAAATGTACTCA+AGG - tig0023857:29608-29627 None:intergenic 20.0%
!! ATCAAATTTATCTGTATTCT+CGG + tig0023857:29632-29651 Msa1411930:three_prime_UTR 20.0%
!! TCAAATTTGTGTCATTATTC+AGG + tig0023857:26651-26670 Msa1411930:five_prime_UTR 25.0%
!! GGATTTTGTAAAAACAATCA+TGG - tig0023857:26679-26698 None:intergenic 25.0%
! GATAAGTTGTTTATCCAAAT+AGG + tig0023857:27506-27525 Msa1411930:intron 25.0%
! CGAAAAATTGTCATATACTT+CGG - tig0023857:27603-27622 None:intergenic 25.0%
! CCGATAATAATTTGAGAAAA+TGG - tig0023857:27752-27771 None:intergenic 25.0%
! ATACTTGAGATTTACTTGAA+TGG - tig0023857:27875-27894 None:intergenic 25.0%
!! AGACGAATTTTCATATACTT+CGG - tig0023857:27983-28002 None:intergenic 25.0%
!!! GTTAGTTCTTAGGATTTTAA+CGG + tig0023857:28004-28023 Msa1411930:intron 25.0%
! AGTAATATTACATAGGAACT+TGG - tig0023857:28341-28360 None:intergenic 25.0%
!! CAATTTTCTCAATCTATTAG+TGG - tig0023857:28523-28542 None:intergenic 25.0%
!! CATCCTTGAAAAATTTGTTT+CGG + tig0023857:28772-28791 Msa1411930:intron 25.0%
! ATTATCAATCTTTCTGTGAT+AGG + tig0023857:28806-28825 Msa1411930:intron 25.0%
!!! TACCCTTTTTTTATGTCAAT+TGG + tig0023857:29124-29143 Msa1411930:CDS 25.0%
! TGCCAATTGACATAAAAAAA+GGG - tig0023857:29129-29148 None:intergenic 25.0%
! TATATCCAAATACCATATGA+AGG + tig0023857:29445-29464 Msa1411930:CDS 25.0%
! ATATCCAAATACCATATGAA+GGG + tig0023857:29446-29465 Msa1411930:CDS 25.0%
! ACTTTAGAGATTAAACCAAG+AGG + tig0023857:26907-26926 Msa1411930:CDS 30.0%
GTATCTTAACATGTAACTAG+TGG + tig0023857:27633-27652 Msa1411930:intron 30.0%
GTATGGTGTTTGGTAAAAAA+TGG + tig0023857:28208-28227 Msa1411930:intron 30.0%
!!! TGTCACTTTTTAGACTTTTG+AGG + tig0023857:28298-28317 Msa1411930:intron 30.0%
!!! CGAAACAAATTTTTCAAGGA+TGG - tig0023857:28774-28793 None:intergenic 30.0%
! AAGCCGAAACAAATTTTTCA+AGG - tig0023857:28778-28797 None:intergenic 30.0%
CTGCCAATTGACATAAAAAA+AGG - tig0023857:29130-29149 None:intergenic 30.0%
GTAAAATTGGAATGCATTTC+TGG + tig0023857:29323-29342 Msa1411930:CDS 30.0%
CTATGGAAGTAAAGAGATAA+AGG - tig0023857:29363-29382 None:intergenic 30.0%
TACATATTTCACCCTTCATA+TGG - tig0023857:29460-29479 None:intergenic 30.0%
TATGAAGGGTGAAATATGTA+AGG + tig0023857:29460-29479 Msa1411930:exon 30.0%
CACGAGTAGCAAAAATATAA+AGG - tig0023857:29495-29514 None:intergenic 30.0%
! ATTGTTCTGTGAGTTTTCAG+AGG - tig0023857:26632-26651 None:intergenic 35.0%
ACTAGTGATTCAAGCATGAT+TGG + tig0023857:26787-26806 Msa1411930:intron 35.0%
TCAAGCATGATTGGAAATGT+TGG + tig0023857:26796-26815 Msa1411930:exon 35.0%
GTAACACAAAACAGAACCTT+GGG - tig0023857:26830-26849 None:intergenic 35.0%
TCTCAAGTTTCCGAAGTTTA+TGG + tig0023857:26878-26897 Msa1411930:CDS 35.0%
CTCAAGTTTCCGAAGTTTAT+GGG + tig0023857:26879-26898 Msa1411930:CDS 35.0%
TCAAGTTTCCGAAGTTTATG+GGG + tig0023857:26880-26899 Msa1411930:CDS 35.0%
AAGTATGTCCCCATAAACTT+CGG - tig0023857:26891-26910 None:intergenic 35.0%
! ACTTCTTCGATTTGAAGCAT+TGG - tig0023857:27097-27116 None:intergenic 35.0%
ATACTTGAGATTTACTCGCA+CGG - tig0023857:27283-27302 None:intergenic 35.0%
TTAGAGACTAAGTCCCTATT+TGG - tig0023857:27523-27542 None:intergenic 35.0%
! AATTCGTCTCGTTAGTTCTT+AGG + tig0023857:27994-28013 Msa1411930:intron 35.0%
!! GTTCTTAGGATTTTAACGGT+AGG + tig0023857:28008-28027 Msa1411930:intron 35.0%
TAGGCTAGGGATTAATATGA+TGG + tig0023857:28027-28046 Msa1411930:intron 35.0%
!! TTTTATGGGCTAAGTAAGTG+AGG + tig0023857:28095-28114 Msa1411930:intron 35.0%
ATATTCGAGGAACTAAATCG+AGG + tig0023857:28123-28142 Msa1411930:intron 35.0%
TATTCGAGGAACTAAATCGA+GGG + tig0023857:28124-28143 Msa1411930:intron 35.0%
! TTTTACCAAACACCATACAC+AGG - tig0023857:28206-28225 None:intergenic 35.0%
TGTTTGGTAAAAAATGGCCT+TGG + tig0023857:28214-28233 Msa1411930:intron 35.0%
AAGTCAAGCTCTCCTTAAAT+GGG + tig0023857:28419-28438 Msa1411930:intron 35.0%
CTGAAATCCATTCCCATTTA+AGG - tig0023857:28434-28453 None:intergenic 35.0%
AATCACTACCTATGAAGCAT+TGG + tig0023857:28463-28482 Msa1411930:intron 35.0%
ACTATGACAGATCAGATACT+GGG - tig0023857:28654-28673 None:intergenic 35.0%
CAATCTTTCTGTGATAGGAA+TGG + tig0023857:28811-28830 Msa1411930:intron 35.0%
!! CATCAAGCCTACTTTTAAGT+GGG + tig0023857:28855-28874 Msa1411930:CDS 35.0%
!! ATCAAGCCTACTTTTAAGTG+GGG + tig0023857:28856-28875 Msa1411930:CDS 35.0%
AACTCGAATGCCTCAATAAA+CGG - tig0023857:29097-29116 None:intergenic 35.0%
ACGTGAAATCTGAAGAAATG+AGG - tig0023857:29223-29242 None:intergenic 35.0%
TATCTCGATTAACATTCCGA+CGG - tig0023857:29248-29267 None:intergenic 35.0%
TTCACCCTTCATATGGTATT+TGG - tig0023857:29453-29472 None:intergenic 35.0%
AAGGGTGAAATATGTAAGGA+AGG + tig0023857:29464-29483 Msa1411930:exon 35.0%
TGTTAAGCAGAACCATAGAA+TGG + tig0023857:29531-29550 Msa1411930:three_prime_UTR 35.0%
! CAAACTGATTAGCCATTCTA+TGG - tig0023857:29546-29565 None:intergenic 35.0%
CTCAAGGGAAAATATCAAAG+AGG - tig0023857:29592-29611 None:intergenic 35.0%
AATGTTGGCACTATATCCCA+AGG + tig0023857:26811-26830 Msa1411930:CDS 40.0%
CGTAACACAAAACAGAACCT+TGG - tig0023857:26831-26850 None:intergenic 40.0%
! AAACCAAGAGGTATGTTGCT+TGG + tig0023857:26919-26938 Msa1411930:intron 40.0%
! ACACCTTCGATCTGAAATGT+CGG - tig0023857:26997-27016 None:intergenic 40.0%
TTAACTACATGTGCCAGTGT+CGG - tig0023857:27143-27162 None:intergenic 40.0%
TATCACTCAGTCTCCTACTT+AGG + tig0023857:27300-27319 Msa1411930:intron 40.0%
ATCACTCAGTCTCCTACTTA+GGG + tig0023857:27301-27320 Msa1411930:intron 40.0%
ACTTCAAAGAGACCCTAAGT+AGG - tig0023857:27316-27335 None:intergenic 40.0%
GTGGACTTCAGATAGATAGA+AGG + tig0023857:27652-27671 Msa1411930:intron 40.0%
!! TAGGATTTTAACGGTAGGCT+AGG + tig0023857:28013-28032 Msa1411930:intron 40.0%
!! AGGATTTTAACGGTAGGCTA+GGG + tig0023857:28014-28033 Msa1411930:intron 40.0%
CTAAATGTCATTGCAGAGCA+TGG - tig0023857:28161-28180 None:intergenic 40.0%
GACCATTGTTTACCTGTGTA+TGG + tig0023857:28191-28210 Msa1411930:intron 40.0%
CACCATACACAGGTAAACAA+TGG - tig0023857:28196-28215 None:intergenic 40.0%
GTTTACCTGTGTATGGTGTT+TGG + tig0023857:28198-28217 Msa1411930:intron 40.0%
! ATATGATACATAAGGGGCAC+TGG + tig0023857:28251-28270 Msa1411930:intron 40.0%
ATTATATATCCGTGCCTCTG+GGG - tig0023857:28386-28405 None:intergenic 40.0%
CATTATATATCCGTGCCTCT+GGG - tig0023857:28387-28406 None:intergenic 40.0%
ACATTATATATCCGTGCCTC+TGG - tig0023857:28388-28407 None:intergenic 40.0%
GAAGTCAAGCTCTCCTTAAA+TGG + tig0023857:28418-28437 Msa1411930:intron 40.0%
AAGCTCTCCTTAAATGGGAA+TGG + tig0023857:28424-28443 Msa1411930:intron 40.0%
TCTCTATGCCAATGCTTCAT+AGG - tig0023857:28474-28493 None:intergenic 40.0%
CTATAGCGAACTACATGCAT+CGG + tig0023857:28553-28572 Msa1411930:intron 40.0%
GACTATGACAGATCAGATAC+TGG - tig0023857:28655-28674 None:intergenic 40.0%
! ACTGTAGGAATTGTTGACTG+CGG + tig0023857:28729-28748 Msa1411930:intron 40.0%
TTGACTGCGGTGCTTATATT+TGG + tig0023857:28742-28761 Msa1411930:intron 40.0%
!! GCATCAAGCCTACTTTTAAG+TGG + tig0023857:28854-28873 Msa1411930:CDS 40.0%
!! TCAAGCCTACTTTTAAGTGG+GGG + tig0023857:28857-28876 Msa1411930:CDS 40.0%
TTTGACCCCCACTTAAAAGT+AGG - tig0023857:28865-28884 None:intergenic 40.0%
!! CATCTTGGTTTTCTGGTCAT+CGG - tig0023857:28989-29008 None:intergenic 40.0%
GATGGATAGGCAAGAGATAA+GGG - tig0023857:29036-29055 None:intergenic 40.0%
! TGATGGATAGGCAAGAGATA+AGG - tig0023857:29037-29056 None:intergenic 40.0%
TTATCTCTTGCCTATCCATC+AGG + tig0023857:29036-29055 Msa1411930:CDS 40.0%
CAATCTTCACCCGTTTATTG+AGG + tig0023857:29084-29103 Msa1411930:CDS 40.0%
ACTCGAATGCCTCAATAAAC+GGG - tig0023857:29096-29115 None:intergenic 40.0%
TATGCTATGAGAGACCATCT+AGG - tig0023857:29157-29176 None:intergenic 40.0%
TTGCGTATCTTACCATTGTG+AGG + tig0023857:29185-29204 Msa1411930:CDS 40.0%
! CCATTCTTTTCTCCTCACAA+TGG - tig0023857:29200-29219 None:intergenic 40.0%
CCATTGTGAGGAGAAAAGAA+TGG + tig0023857:29197-29216 Msa1411930:CDS 40.0%
! AGATAGCCTTGCAAGTTACA+GGG + tig0023857:29263-29282 Msa1411930:CDS 40.0%
GGGTTCTATTGGGGTAAAAT+TGG + tig0023857:29310-29329 Msa1411930:CDS 40.0%
TTACTTCCATAGAGTGCGTT+AGG + tig0023857:29371-29390 Msa1411930:CDS 40.0%
ATCCGCATACATACCAGTAA+GGG - tig0023857:29401-29420 None:intergenic 40.0%
TATCCGCATACATACCAGTA+AGG - tig0023857:29402-29421 None:intergenic 40.0%
ATGCTGCATCACAGACAAAA+GGG - tig0023857:29426-29445 None:intergenic 40.0%
TATGCTGCATCACAGACAAA+AGG - tig0023857:29427-29446 None:intergenic 40.0%
CTTGAGACAGAAACCTTAGC+AGG - tig0023857:26865-26884 None:intergenic 45.0%
CAACCAAGCAACATACCTCT+TGG - tig0023857:26925-26944 None:intergenic 45.0%
AGTGTCTGATGTCTGAGTGT+CGG + tig0023857:27114-27133 Msa1411930:intron 45.0%
! ATCGGTGTTCATGTGAGTGT+TGG + tig0023857:27197-27216 Msa1411930:intron 45.0%
CTCGCACGGTAAATCTAGTA+TGG - tig0023857:27269-27288 None:intergenic 45.0%
! AGATAGATAGAAGGCGTGTC+CGG + tig0023857:27661-27680 Msa1411930:intron 45.0%
!! GTCAGTGTAGTGTTGATGTC+CGG - tig0023857:27697-27716 None:intergenic 45.0%
! CGAAGTGTGAGTGTTGTGTT+TGG + tig0023857:27776-27795 Msa1411930:intron 45.0%
AAGTGAGGAAGCGATATTCG+AGG + tig0023857:28110-28129 Msa1411930:intron 45.0%
!! ATCGGTGTCTTCTGAAGTGT+CGG + tig0023857:28571-28590 Msa1411930:intron 45.0%
AGTCAGCTGATCAAAGTCGT+TGG - tig0023857:28703-28722 None:intergenic 45.0%
CGATGACCAGAAAACCAAGA+TGG + tig0023857:28987-29006 Msa1411930:CDS 45.0%
TGACCAGAAAACCAAGATGG+TGG + tig0023857:28990-29009 Msa1411930:CDS 45.0%
! TACATCCACACCTGATGGAT+AGG - tig0023857:29049-29068 None:intergenic 45.0%
TAGCATACATCCACACCTGA+TGG - tig0023857:29054-29073 None:intergenic 45.0%
CAATTGGCAGTCTACCTAGA+TGG + tig0023857:29140-29159 Msa1411930:CDS 45.0%
TTCAGATTTCACGTTGCCGT+CGG + tig0023857:29229-29248 Msa1411930:CDS 45.0%
! GAGATAGCCTTGCAAGTTAC+AGG + tig0023857:29262-29281 Msa1411930:CDS 45.0%
TGCCCTTACTGGTATGTATG+CGG + tig0023857:29396-29415 Msa1411930:CDS 45.0%
CGCTTGTCAAATGCCTGCTA+AGG + tig0023857:26849-26868 Msa1411930:CDS 50.0%
! GCACCGACATTTCAGATCGA+AGG + tig0023857:26991-27010 Msa1411930:intron 50.0%
TTCCTTAACCAATGCCCCAG+AGG + tig0023857:28369-28388 Msa1411930:intron 50.0%
CAGCTGACTGTAGTGACTGT+AGG + tig0023857:28714-28733 Msa1411930:intron 50.0%
! TTCGCTGCGCAAGTCTTGTA+GGG + tig0023857:28916-28935 Msa1411930:CDS 50.0%
AGCCTTCCTTCATTGCTCGA+GGG - tig0023857:28943-28962 None:intergenic 50.0%
ATGAAGGAAGGCTCATCTGC+TGG + tig0023857:28950-28969 Msa1411930:CDS 50.0%
!! CTTGGTTTTCTGGTCATCGG+AGG - tig0023857:28986-29005 None:intergenic 50.0%
!! CCACCACCATCTTGGTTTTC+TGG - tig0023857:28996-29015 None:intergenic 50.0%
! CCAGAAAACCAAGATGGTGG+TGG + tig0023857:28993-29012 Msa1411930:CDS 50.0%
AGTGTTCTCCACCACCATCT+TGG - tig0023857:29004-29023 None:intergenic 50.0%
TCTTGCCTATCCATCAGGTG+TGG + tig0023857:29041-29060 Msa1411930:CDS 50.0%
! CACAAGCCCTGTAACTTGCA+AGG - tig0023857:29272-29291 None:intergenic 50.0%
GATGCCACTGGGGTTCTATT+GGG + tig0023857:29300-29319 Msa1411930:CDS 50.0%
ATGCCACTGGGGTTCTATTG+GGG + tig0023857:29301-29320 Msa1411930:CDS 50.0%
TTACCCCAATAGAACCCCAG+TGG - tig0023857:29307-29326 None:intergenic 50.0%
!! TGCCTCTGGGGCATTGGTTA+AGG - tig0023857:28374-28393 None:intergenic 55.0%
TAACCAATGCCCCAGAGGCA+CGG + tig0023857:28374-28393 Msa1411930:intron 55.0%
TGCGCAGCGAAGGTAACACA+GGG - tig0023857:28907-28926 None:intergenic 55.0%
TTGCGCAGCGAAGGTAACAC+AGG - tig0023857:28908-28927 None:intergenic 55.0%
CTACAAGACTTGCGCAGCGA+AGG - tig0023857:28917-28936 None:intergenic 55.0%
! CTTCGCTGCGCAAGTCTTGT+AGG + tig0023857:28915-28934 Msa1411930:CDS 55.0%
GCCTTCCTTCATTGCTCGAG+GGG - tig0023857:28942-28961 None:intergenic 55.0%
GAGCCTTCCTTCATTGCTCG+AGG - tig0023857:28944-28963 None:intergenic 55.0%
TTACAGGGCTTGTGAGCCGT+TGG + tig0023857:29278-29297 Msa1411930:CDS 55.0%
AGAACCCCAGTGGCATCCAA+CGG - tig0023857:29297-29316 None:intergenic 55.0%
GGATGCCACTGGGGTTCTAT+TGG + tig0023857:29299-29318 Msa1411930:CDS 55.0%
GGCACACCTAACGCACTCTA+TGG - tig0023857:29380-29399 None:intergenic 55.0%
TGCGTTAGGTGTGCCCTTAC+TGG + tig0023857:29385-29404 Msa1411930:CDS 55.0%
!! TGAGTGTCGGACACCGACAC+TGG + tig0023857:27127-27146 Msa1411930:intron 60.0%
GATGTCCGGCACTCAGACAC+CGG - tig0023857:27683-27702 None:intergenic 60.0%
!! TATCCGTGCCTCTGGGGCAT+TGG - tig0023857:28380-28399 None:intergenic 60.0%
TAGGGCCCCTCGAGCAATGA+AGG + tig0023857:28934-28953 Msa1411930:CDS 60.0%
GCCCCTCGAGCAATGAAGGA+AGG + tig0023857:28938-28957 Msa1411930:CDS 60.0%
TGTGAGCCGTTGGATGCCAC+TGG + tig0023857:29288-29307 Msa1411930:CDS 60.0%
GTGAGCCGTTGGATGCCACT+GGG + tig0023857:29289-29308 Msa1411930:CDS 60.0%
TGAGCCGTTGGATGCCACTG+GGG + tig0023857:29290-29309 Msa1411930:CDS 60.0%
CGTGTCCGGTGTCTGAGTGC+CGG + tig0023857:27675-27694 Msa1411930:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023857 gene 26589 29655 26589 ID=Msa1411930;Name=Msa1411930
tig0023857 mRNA 26589 29655 26589 ID=Msa1411930-mRNA-1;Parent=Msa1411930;Name=Msa1411930-mRNA-1;_AED=0.35;_eAED=0.35;_QI=94|1|1|1|0.5|0.66|3|184|256
tig0023857 exon 26589 26672 26589 ID=Msa1411930-mRNA-1:exon:20400;Parent=Msa1411930-mRNA-1
tig0023857 exon 26792 26928 26792 ID=Msa1411930-mRNA-1:exon:20401;Parent=Msa1411930-mRNA-1
tig0023857 exon 28828 29655 28828 ID=Msa1411930-mRNA-1:exon:20402;Parent=Msa1411930-mRNA-1
tig0023857 five_prime_UTR 26589 26672 26589 ID=Msa1411930-mRNA-1:five_prime_utr;Parent=Msa1411930-mRNA-1
tig0023857 five_prime_UTR 26792 26801 26792 ID=Msa1411930-mRNA-1:five_prime_utr;Parent=Msa1411930-mRNA-1
tig0023857 CDS 26802 26928 26802 ID=Msa1411930-mRNA-1:cds;Parent=Msa1411930-mRNA-1
tig0023857 CDS 28828 29471 28828 ID=Msa1411930-mRNA-1:cds;Parent=Msa1411930-mRNA-1
tig0023857 three_prime_UTR 29472 29655 29472 ID=Msa1411930-mRNA-1:three_prime_utr;Parent=Msa1411930-mRNA-1
Gene Sequence

>Msa1411930

ATGATTGGAAATGTTGGCACTATATCCCAAGGTTCTGTTTTGTGTTACGCTTGTCAAATGCCTGCTAAGGTTTCTGTCTCAAGTTTCCGAAGTTTATGGGGACATACTTTAGAGATTAAACCAAGAGGAATGGCATACACAGACATGTCTTCTGCATCAAGCCTACTTTTAAGTGGGGGTCAAAATCTTCTATCTCGTACTATCCCTGTGTTACCTTCGCTGCGCAAGTCTTGTAGGGCCCCTCGAGCAATGAAGGAAGGCTCATCTGCTGGCTTTAAGTTTCCTCCGATGACCAGAAAACCAAGATGGTGGTGGAGAACACTAGCATGCATCCCTTATCTCTTGCCTATCCATCAGGTGTGGATGTATGCTAAGACAGCATACAATCTTCACCCGTTTATTGAGGCATTCGAGTTCTTAACGTACCCTTTTTTTATGTCAATTGGCAGTCTACCTAGATGGTCTCTCATAGCATACTTCTTGATTGCGTATCTTACCATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCACGTTGCCGTCGGAATGTTAATCGAGATAGCCTTGCAAGTTACAGGGCTTGTGAGCCGTTGGATGCCACTGGGGTTCTATTGGGGTAAAATTGGAATGCATTTCTGGACTACTGCATTTTTCCTTTATCTCTTTACTTCCATAGAGTGCGTTAGGTGTGCCCTTACTGGTATGTATGCGGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGAAGGGTGA

Protein sequence

>Msa1411930

MIGNVGTISQGSVLCYACQMPAKVSVSSFRSLWGHTLEIKPRGMAYTDMSSASSLLLSGGQNLLSRTIPVLPSLRKSCRAPRAMKEGSSAGFKFPPMTRKPRWWWRTLACIPYLLPIHQVWMYAKTAYNLHPFIEAFEFLTYPFFMSIGSLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGLVSRWMPLGFYWGKIGMHFWTTAFFLYLFTSIECVRCALTGMYADIPFVCDAAYIQIPYEG*