AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375970 MtrunA17_Chr4g0077121 96.746 338 9 1 1 338 1 336 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375970 AT2G43950.1 63.295 346 113 3 2 338 3 343 2.71e-153 434
Msa1375970 AT2G43950.2 58.958 307 112 3 2 299 3 304 6.31e-121 352

Find 111 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGCGTGTAATTATT+AGG 0.200366 tig0019777:+40095 None:intergenic
CTGAAAAGATAATTTCAATT+TGG 0.215408 tig0019777:+39905 None:intergenic
CGTGTAATTATTAGGGTTTC+CGG 0.226456 tig0019777:+40103 None:intergenic
AATTGAACTTTCATCTTCAT+TGG 0.277986 tig0019777:+36961 None:intergenic
ATTTGACGGGAGAGAAAGTA+TGG 0.298323 tig0019777:+39223 None:intergenic
CCTTGGCTGGGCATCCCTTT+GGG 0.317934 tig0019777:-37539 Msa1375970:intron
GGAAATCTGAAAGTTGCTTT+TGG 0.321527 tig0019777:+39575 None:intergenic
ATTCGGAGGTTCGCCTTGGC+TGG 0.321634 tig0019777:-37552 Msa1375970:CDS
ATATAAATTGCAGGAAATTT+CGG 0.321891 tig0019777:+36852 None:intergenic
GCCTTGGCTGGGCATCCCTT+TGG 0.333645 tig0019777:-37540 Msa1375970:CDS
ACAATTGCGATTCGAACTAT+TGG 0.339553 tig0019777:-37630 Msa1375970:CDS
TATGGAGCGTGTAATTATTA+GGG 0.342261 tig0019777:+40096 None:intergenic
AGCACCAGTGAGTTTGAATC+TGG 0.355796 tig0019777:+39764 None:intergenic
AGAAGAGATGGGACATTTGA+TGG 0.358516 tig0019777:-36882 Msa1375970:exon
ATAATTGACATATAAATTGC+AGG 0.362902 tig0019777:+36843 None:intergenic
TTCTTCTGATAACTATAATT+CGG 0.366285 tig0019777:+36647 None:intergenic
TCTGTCAGTGGGATTCTTAA+AGG 0.372625 tig0019777:-39476 Msa1375970:CDS
CTAGAGCACTGTGGTCTTCA+AGG 0.384543 tig0019777:+39811 None:intergenic
TTCCTTCAGGTTGGTGATGA+AGG 0.388318 tig0019777:-37003 Msa1375970:intron
TACTCGGAAATGACAAGATA+TGG 0.407168 tig0019777:+40015 None:intergenic
TAATTCCTTGGCGGTGTGGC+TGG 0.415947 tig0019777:-36755 Msa1375970:three_prime_UTR
TATTCTGCAAAGGTGACATT+TGG 0.416630 tig0019777:-36804 Msa1375970:three_prime_UTR
ATTTAAAGCTGGTTATGATT+CGG 0.428310 tig0019777:-37569 Msa1375970:CDS
AAGACCAAACCTACGCTTGA+AGG 0.430680 tig0019777:+39187 None:intergenic
TTGGTCTTTCTGACAAGTTA+AGG 0.431557 tig0019777:-39172 Msa1375970:intron
TTTGTTGACGGCGGCGGCGG+CGG 0.438275 tig0019777:+40038 None:intergenic
AGAGAAAGAGGAGGAGCAGC+AGG 0.441827 tig0019777:-39531 Msa1375970:CDS
CAACTACCGCCGGTGAGGAT+TGG 0.444311 tig0019777:+40069 None:intergenic
TCCAAGTCCATCTAATTCCT+TGG 0.447483 tig0019777:-36767 Msa1375970:three_prime_UTR
TGACTAGTGGGTGGTGGAGA+TGG 0.451110 tig0019777:-40135 Msa1375970:exon
AAAATTTACAGGAAACTTTG+TGG 0.453050 tig0019777:+39940 None:intergenic
AGAGGAGGAGCAGCAGGAGG+AGG 0.453391 tig0019777:-39525 Msa1375970:CDS
TGCGCTTTCGCTGTCGAACT+CGG 0.456394 tig0019777:+39971 None:intergenic
TTTGCCTTCAAGCGTAGGTT+TGG 0.457188 tig0019777:-39191 Msa1375970:CDS
GAGTGAGATAAGTGACTAGT+GGG 0.464137 tig0019777:-40147 Msa1375970:five_prime_UTR
TGGTTTGTTGACGGCGGCGG+CGG 0.466893 tig0019777:+40035 None:intergenic
GAAGATTTCAAATTTAAAGC+TGG 0.470602 tig0019777:-37580 Msa1375970:CDS
TGATAGTTGAAGTGCATAGC+CGG 0.474867 tig0019777:+39686 None:intergenic
ATATGGTTTGTTGACGGCGG+CGG 0.478912 tig0019777:+40032 None:intergenic
GTGGAGATGGATTCAGCAAC+CGG 0.479701 tig0019777:-40122 Msa1375970:exon
TTCGGAGGTTCGCCTTGGCT+GGG 0.481241 tig0019777:-37551 Msa1375970:CDS
GCCACTTCCATCCGCTGGAT+TGG 0.483583 tig0019777:-39661 Msa1375970:intron
ATTCTGAGGGCAGGCCTACT+CGG 0.483618 tig0019777:+39999 None:intergenic
TATGATTCGGAGGTTCGCCT+TGG 0.485674 tig0019777:-37556 Msa1375970:CDS
CACACCGCCAAGGAATTAGA+TGG 0.488597 tig0019777:+36760 None:intergenic
GCCAAGGAATTAGATGGACT+TGG 0.502941 tig0019777:+36766 None:intergenic
GATAGTTGAAGTGCATAGCC+GGG 0.505267 tig0019777:+39687 None:intergenic
GAATCTGGGACCAACGTCAA+TGG 0.510577 tig0019777:+39779 None:intergenic
ACCAATCCAGCGGATGGAAG+TGG 0.512331 tig0019777:+39660 None:intergenic
CTTCAGGTTGGTGATGAAGG+TGG 0.513813 tig0019777:-37000 Msa1375970:intron
AGAGTGAGATAAGTGACTAG+TGG 0.514533 tig0019777:-40148 Msa1375970:five_prime_UTR
GACAAGATATGGTTTGTTGA+CGG 0.514737 tig0019777:+40026 None:intergenic
AGTTTCGTTACAAGAGAAAG+AGG 0.517878 tig0019777:-39543 Msa1375970:CDS
AAATTTGAAATCTTCACCAT+AGG 0.521461 tig0019777:+37588 None:intergenic
TGTCATTTGCCTTCAAGCGT+AGG 0.530223 tig0019777:-39196 Msa1375970:CDS
TGTTTCGGATTAAGAAGAGA+TGG 0.531407 tig0019777:-36894 Msa1375970:CDS
GCAAATGACAAATCATTTGA+CGG 0.532446 tig0019777:+39209 None:intergenic
CACTGGTGCTCATGATGTCA+AGG 0.533292 tig0019777:-39751 Msa1375970:CDS
TCAACGCCACTTCCATCCGC+TGG 0.542399 tig0019777:-39666 Msa1375970:CDS
TCAATTCATCATCCTTGTAG+TGG 0.542879 tig0019777:+39426 None:intergenic
GCAACTTTCAGATTTCCTCT+AGG 0.543233 tig0019777:-39569 Msa1375970:CDS
AAGTCCATCTAATTCCTTGG+CGG 0.545533 tig0019777:-36764 Msa1375970:three_prime_UTR
AAAATTCCTTGTCTGTCAGT+GGG 0.547827 tig0019777:-39487 Msa1375970:CDS
GCTGTCTACAAGCATACCTA+TGG 0.550366 tig0019777:-37604 Msa1375970:CDS
CAAGGTCGTAGTGGAGGCTA+AGG 0.551757 tig0019777:+39829 None:intergenic
CAAATGACAAATCATTTGAC+GGG 0.553334 tig0019777:+39210 None:intergenic
TTCAGGTTGGTGATGAAGGT+GGG 0.556339 tig0019777:-36999 Msa1375970:intron
GTTTCGGATTAAGAAGAGAT+GGG 0.558012 tig0019777:-36893 Msa1375970:CDS
AAATGAGACACGTACCCAAA+GGG 0.561109 tig0019777:+37525 None:intergenic
CAATTCATCATCCTTGTAGT+GGG 0.563611 tig0019777:+39427 None:intergenic
CGAACTCGGTGGTAATTCTG+AGG 0.569969 tig0019777:+39985 None:intergenic
GGTCCCAGATTCAAACTCAC+TGG 0.571945 tig0019777:-39768 Msa1375970:CDS
GATAAGTGACTAGTGGGTGG+TGG 0.572597 tig0019777:-40141 Msa1375970:five_prime_UTR
AAAATATGGGTATTCTGCAA+AGG 0.573738 tig0019777:-36814 Msa1375970:three_prime_UTR
GAAAGAGGAGGAGCAGCAGG+AGG 0.574367 tig0019777:-39528 Msa1375970:CDS
ATATCTTGTCATTTCCGAGT+AGG 0.574605 tig0019777:-40013 Msa1375970:CDS
TCGGTGGTAATTCTGAGGGC+AGG 0.578370 tig0019777:+39990 None:intergenic
CCCAAAGGGATGCCCAGCCA+AGG 0.579829 tig0019777:+37539 None:intergenic
GAACATACCAATCCAGCGGA+TGG 0.588139 tig0019777:+39654 None:intergenic
CATCTAATTCCTTGGCGGTG+TGG 0.594202 tig0019777:-36759 Msa1375970:three_prime_UTR
AAGATAATTTCAATTTGGCG+AGG 0.598597 tig0019777:+39910 None:intergenic
TGTCTGCACTGCCCACTACA+AGG 0.599268 tig0019777:-39438 Msa1375970:CDS
TAAAGCTGGTTATGATTCGG+AGG 0.600014 tig0019777:-37566 Msa1375970:CDS
GAAGTTAAGATACCGCTACA+AGG 0.605149 tig0019777:-39405 Msa1375970:intron
GTTGCTAATATCGCTGACCC+CGG 0.605885 tig0019777:-39705 Msa1375970:CDS
GTTAAGAGTTCCATTGACGT+TGG 0.609020 tig0019777:-39789 Msa1375970:CDS
TATGAAGCTGATCTGAGGCT+CGG 0.610187 tig0019777:+39860 None:intergenic
CCATAAAATCCAATCCTCAC+CGG 0.611947 tig0019777:-40078 Msa1375970:CDS
CATGATGTCAAGGCTCAACA+AGG 0.612893 tig0019777:-39741 Msa1375970:CDS
GGTCTTCAAGGTCGTAGTGG+AGG 0.622677 tig0019777:+39823 None:intergenic
AAGAATCCCACTGACAGACA+AGG 0.625574 tig0019777:+39481 None:intergenic
TGTGGTCTTCAAGGTCGTAG+TGG 0.626033 tig0019777:+39820 None:intergenic
GGCAGAGGATCAACTACCGC+CGG 0.628335 tig0019777:+40059 None:intergenic
AAATTGCAGGAAATTTCGGT+AGG 0.630272 tig0019777:+36856 None:intergenic
TTCGATATGAAGCTGATCTG+AGG 0.636620 tig0019777:+39855 None:intergenic
GCACCAGTGAGTTTGAATCT+GGG 0.638299 tig0019777:+39765 None:intergenic
GAACTCGGTGGTAATTCTGA+GGG 0.640245 tig0019777:+39986 None:intergenic
AGGATCAACTACCGCCGGTG+AGG 0.644689 tig0019777:+40064 None:intergenic
TTCGTTACAAGAGAAAGAGG+AGG 0.646802 tig0019777:-39540 Msa1375970:CDS
AGCAGTAATATACCTTGTAG+CGG 0.666629 tig0019777:+39393 None:intergenic
TGTCAAGGCTCAACAAGGAG+AGG 0.670822 tig0019777:-39736 Msa1375970:CDS
AAGATATGGTTTGTTGACGG+CGG 0.675992 tig0019777:+40029 None:intergenic
GCTTTCGCTGTCGAACTCGG+TGG 0.680041 tig0019777:+39974 None:intergenic
TTTGACGGGAGAGAAAGTAT+GGG 0.685254 tig0019777:+39224 None:intergenic
TGAGATAAGTGACTAGTGGG+TGG 0.689966 tig0019777:-40144 Msa1375970:five_prime_UTR
ATAGTTGAAGTGCATAGCCG+GGG 0.690042 tig0019777:+39688 None:intergenic
AAAAGAACATACCAATCCAG+CGG 0.697521 tig0019777:+39650 None:intergenic
TCAACAAGGAGAGGTTACAA+TGG 0.698086 tig0019777:-39727 Msa1375970:CDS
TGTAACGAAACTTCACCTAG+AGG 0.699865 tig0019777:+39554 None:intergenic
TAAAATCCAATCCTCACCGG+CGG 0.708233 tig0019777:-40075 Msa1375970:CDS
AACTCTTAACTAGAGCACTG+TGG 0.799938 tig0019777:+39802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAAAATGATAAAAATT+GGG + tig0019777:37363-37382 None:intergenic 10.0%
!! ATAGATAAAATGATAAAAAT+TGG + tig0019777:37364-37383 None:intergenic 10.0%
!!! TTTGTTTATTTTAAATTACA+AGG + tig0019777:38478-38497 None:intergenic 10.0%
!!! TAAATTTTTCAAATAAATGC+AGG - tig0019777:37457-37476 Msa1375970:intron 15.0%
!! TAAATCTTAGAAAATGAAAA+TGG - tig0019777:38225-38244 Msa1375970:intron 15.0%
!! AAATCTTAGAAAATGAAAAT+GGG - tig0019777:38226-38245 Msa1375970:intron 15.0%
!! TCAAATATCATAAAAGAAAA+TGG + tig0019777:38332-38351 None:intergenic 15.0%
!! CACAACAAATAAAAAAATTA+GGG + tig0019777:38545-38564 None:intergenic 15.0%
!! TCACAACAAATAAAAAAATT+AGG + tig0019777:38546-38565 None:intergenic 15.0%
!! AAATTAATGTTTCATGTAAA+AGG + tig0019777:38614-38633 None:intergenic 15.0%
!! CAAAAAAAATTCAAGTAAAA+AGG + tig0019777:39545-39564 None:intergenic 15.0%
!! CTGAAAAGATAATTTCAATT+TGG + tig0019777:36822-36841 None:intergenic 20.0%
!! AAATAAATGAATGATAGTAG+AGG + tig0019777:37118-37137 None:intergenic 20.0%
!! TAGGAAAAAAATTCTTAAGA+GGG + tig0019777:37593-37612 None:intergenic 20.0%
!! ATAGGAAAAAAATTCTTAAG+AGG + tig0019777:37594-37613 None:intergenic 20.0%
!!! TTTAACATAACATTTCTAGA+TGG + tig0019777:37637-37656 None:intergenic 20.0%
!!! GTTAAAATTGTTTTATCAAG+TGG - tig0019777:37651-37670 Msa1375970:intron 20.0%
!!! TCTTTCTTATTTATCTCATA+GGG + tig0019777:37922-37941 None:intergenic 20.0%
!!! TTCTTTCTTATTTATCTCAT+AGG + tig0019777:37923-37942 None:intergenic 20.0%
!! AATGATTTCACAAAGTAAAT+GGG + tig0019777:37971-37990 None:intergenic 20.0%
!! AAATGATTTCACAAAGTAAA+TGG + tig0019777:37972-37991 None:intergenic 20.0%
!!! AAATTTTCAGAAACTTTTAG+TGG - tig0019777:38356-38375 Msa1375970:intron 20.0%
!!! TATTTTAAATTACAAGGAGA+TGG + tig0019777:38472-38491 None:intergenic 20.0%
!! TTCTAATGAGATTATATTGA+GGG + tig0019777:38582-38601 None:intergenic 20.0%
!! ATTCTAATGAGATTATATTG+AGG + tig0019777:38583-38602 None:intergenic 20.0%
!!! ATTGTTAGCATTTTCTTTTT+TGG - tig0019777:38819-38838 Msa1375970:intron 20.0%
!!! TTTTAAAAGCCATATTAGTA+AGG + tig0019777:39052-39071 None:intergenic 20.0%
!! ATAATGTTATACTGAACAAA+CGG + tig0019777:39500-39519 None:intergenic 20.0%
!! ATATAAATTGCAGGAAATTT+CGG + tig0019777:39875-39894 None:intergenic 20.0%
!! ATAATTGACATATAAATTGC+AGG + tig0019777:39884-39903 None:intergenic 20.0%
!! TTCTTCTGATAACTATAATT+CGG + tig0019777:40080-40099 None:intergenic 20.0%
!! CTAAAAATATATTTGCAAGA+CGG + tig0019777:40127-40146 None:intergenic 20.0%
! AAAATTTACAGGAAACTTTG+TGG + tig0019777:36787-36806 None:intergenic 25.0%
!! CAAAGTTTCCTGTAAATTTT+TGG - tig0019777:36787-36806 Msa1375970:three_prime_UTR 25.0%
!! CTTAAAGGTCAATTTTTGAA+TGG - tig0019777:37263-37282 Msa1375970:intron 25.0%
! AAGGTAATAAATTGAAGAGA+TGG + tig0019777:37395-37414 None:intergenic 25.0%
! CACATATTATTGCAAGTAAT+AGG + tig0019777:37612-37631 None:intergenic 25.0%
!!! AAAATTGTTTTATCAAGTGG+TGG - tig0019777:37654-37673 Msa1375970:intron 25.0%
! GAATTTCTTGAAATACAATC+TGG - tig0019777:37768-37787 Msa1375970:intron 25.0%
! AAGAAAGAAAATGAAGAGAA+CGG - tig0019777:37934-37953 Msa1375970:intron 25.0%
! ATGATTTCACAAAGTAAATG+GGG + tig0019777:37970-37989 None:intergenic 25.0%
!!! CTCAGTTTAACTTGATAATA+CGG - tig0019777:38019-38038 Msa1375970:intron 25.0%
!!! TCAGTTTAACTTGATAATAC+GGG - tig0019777:38020-38039 Msa1375970:intron 25.0%
!!! GTTAATTTTACTTGCTAACA+AGG + tig0019777:38204-38223 None:intergenic 25.0%
! ATCATAAAAGAAAATGGTGA+AGG + tig0019777:38326-38345 None:intergenic 25.0%
! GTTATGAAGAATGTAAGTTT+AGG + tig0019777:38403-38422 None:intergenic 25.0%
! CAATTGTAATAGAGAGAATA+TGG + tig0019777:38433-38452 None:intergenic 25.0%
! TTCATCAACTACTTTACATT+TGG - tig0019777:38647-38666 Msa1375970:intron 25.0%
!!! TATCAAAGGAGCATTTAATT+GGG + tig0019777:38764-38783 None:intergenic 25.0%
!!! ACAATCAATTACTTTTAGGT+TGG + tig0019777:38804-38823 None:intergenic 25.0%
!!! GCTAACAATCAATTACTTTT+AGG + tig0019777:38808-38827 None:intergenic 25.0%
!!! ATGGCTTTTAAAATGCTTTA+TGG - tig0019777:39059-39078 Msa1375970:intron 25.0%
!! AAATTTGAAATCTTCACCAT+AGG + tig0019777:39139-39158 None:intergenic 25.0%
!! GAAGATTTCAAATTTAAAGC+TGG - tig0019777:39144-39163 Msa1375970:intron 25.0%
!! ATTTAAAGCTGGTTATGATT+CGG - tig0019777:39155-39174 Msa1375970:intron 25.0%
! ATTAGAAATGCAAAATCAAC+AGG + tig0019777:39276-39295 None:intergenic 25.0%
!! TGATTTTGCATTTCTAATTG+TGG - tig0019777:39278-39297 Msa1375970:intron 25.0%
! TCAAAAAATCCTTTATATGC+AGG + tig0019777:39436-39455 None:intergenic 25.0%
! CATCATTATACTGAGAAATT+CGG - tig0019777:39641-39660 Msa1375970:intron 25.0%
! AATTGAACTTTCATCTTCAT+TGG + tig0019777:39766-39785 None:intergenic 25.0%
!!! AATCTTCAGTTTTGATGTTT+CGG - tig0019777:39815-39834 Msa1375970:CDS 25.0%
!! ACAATCTTTACAGATTTTGT+AGG + tig0019777:40038-40057 None:intergenic 25.0%
TATGGAGCGTGTAATTATTA+GGG + tig0019777:36631-36650 None:intergenic 30.0%
TTATGGAGCGTGTAATTATT+AGG + tig0019777:36632-36651 None:intergenic 30.0%
AAGATAATTTCAATTTGGCG+AGG + tig0019777:36817-36836 None:intergenic 30.0%
! TCTTTTCAGAACAACAGTAA+AGG - tig0019777:36833-36852 Msa1375970:three_prime_UTR 30.0%
ATTTGGCACTCATATAAGAT+TGG - tig0019777:37431-37450 Msa1375970:intron 30.0%
CAAATGACAAATCATTTGAC+GGG + tig0019777:37517-37536 None:intergenic 30.0%
GCAAATGACAAATCATTTGA+CGG + tig0019777:37518-37537 None:intergenic 30.0%
AAATTTGTGTAGAGTAGCTT+TGG + tig0019777:37854-37873 None:intergenic 30.0%
CAAAACAAAGAAATGTAGCA+AGG + tig0019777:37887-37906 None:intergenic 30.0%
!!! TGAGCACGTATTTTTAGAAA+AGG + tig0019777:38003-38022 None:intergenic 30.0%
!! CAGTTTAACTTGATAATACG+GGG - tig0019777:38021-38040 Msa1375970:intron 30.0%
!!! GAACAATTGTCTGCATTTTT+TGG + tig0019777:38161-38180 None:intergenic 30.0%
ATAGAGAGAATATGGAAGAA+AGG + tig0019777:38425-38444 None:intergenic 30.0%
ATGTTTCATGTAAAAGGAGT+CGG + tig0019777:38608-38627 None:intergenic 30.0%
TGTAGTTGATTACTATGTGT+TGG + tig0019777:38674-38693 None:intergenic 30.0%
!! ATCAAAGGAGCATTTAATTG+GGG + tig0019777:38763-38782 None:intergenic 30.0%
!! CTATCAAAGGAGCATTTAAT+TGG + tig0019777:38765-38784 None:intergenic 30.0%
!!! AGCATTTTCTTTTTTGGCTA+TGG - tig0019777:38825-38844 Msa1375970:intron 30.0%
AAAATACCTTGTTCTCTTGT+CGG + tig0019777:38919-38938 None:intergenic 30.0%
AAGTGGAAACACCAAAATAA+GGG + tig0019777:38963-38982 None:intergenic 30.0%
TAAGTGGAAACACCAAAATA+AGG + tig0019777:38964-38983 None:intergenic 30.0%
! AAATACCTATAGAGCATCTT+TGG + tig0019777:38996-39015 None:intergenic 30.0%
AGACGAGCTTATTATTCTAA+GGG + tig0019777:39029-39048 None:intergenic 30.0%
AATGCTTTATGGATAGTTAC+TGG - tig0019777:39070-39089 Msa1375970:intron 30.0%
ACAGATGGCATTAATGAAAT+CGG + tig0019777:39246-39265 None:intergenic 30.0%
AACAGATAGTTAGTAGTGTA+TGG + tig0019777:39304-39323 None:intergenic 30.0%
!! TACTAACTATCTGTTGCTTT+GGG - tig0019777:39309-39328 Msa1375970:intron 30.0%
AGATATGTTGCACTTACATT+GGG - tig0019777:39372-39391 Msa1375970:intron 30.0%
AAAATCCTTTATATGCAGGA+AGG + tig0019777:39432-39451 None:intergenic 30.0%
! GAAGATTTTATGTCATCTTG+TGG + tig0019777:39802-39821 None:intergenic 30.0%
AAAATATGGGTATTCTGCAA+AGG - tig0019777:39910-39929 Msa1375970:CDS 30.0%
CGTGTAATTATTAGGGTTTC+CGG + tig0019777:36624-36643 None:intergenic 35.0%
!! GACAAGATATGGTTTGTTGA+CGG + tig0019777:36701-36720 None:intergenic 35.0%
TACTCGGAAATGACAAGATA+TGG + tig0019777:36712-36731 None:intergenic 35.0%
! ATATCTTGTCATTTCCGAGT+AGG - tig0019777:36711-36730 Msa1375970:three_prime_UTR 35.0%
AAAAGAACATACCAATCCAG+CGG + tig0019777:37077-37096 None:intergenic 35.0%
!! GGAAATCTGAAAGTTGCTTT+TGG + tig0019777:37152-37171 None:intergenic 35.0%
AGTTTCGTTACAAGAGAAAG+AGG - tig0019777:37181-37200 Msa1375970:intron 35.0%
AAAAATTCCTTGTCTGTCAG+TGG - tig0019777:37236-37255 Msa1375970:intron 35.0%
AAAATTCCTTGTCTGTCAGT+GGG - tig0019777:37237-37256 Msa1375970:intron 35.0%
CAATTCATCATCCTTGTAGT+GGG + tig0019777:37300-37319 None:intergenic 35.0%
TCAATTCATCATCCTTGTAG+TGG + tig0019777:37301-37320 None:intergenic 35.0%
AGCAGTAATATACCTTGTAG+CGG + tig0019777:37334-37353 None:intergenic 35.0%
AATAACTACTCAAGCAGCTA+AGG + tig0019777:37414-37433 None:intergenic 35.0%
TAGCTGCTTGAGTAGTTATT+TGG - tig0019777:37414-37433 Msa1375970:intron 35.0%
! TTGGTCTTTCTGACAAGTTA+AGG - tig0019777:37552-37571 Msa1375970:CDS 35.0%
AAGAAAGAAAATACAGCCTC+AGG - tig0019777:37797-37816 Msa1375970:intron 35.0%
ATGAAGAGAACGGAAAATTG+AGG - tig0019777:37944-37963 Msa1375970:intron 35.0%
CATCTTCTCTTCATCACAAT+GGG + tig0019777:38071-38090 None:intergenic 35.0%
TCATCTTCTCTTCATCACAA+TGG + tig0019777:38072-38091 None:intergenic 35.0%
TAGATTATGCAGTAACCAGT+TGG + tig0019777:38706-38725 None:intergenic 35.0%
CAGTAAGTGTATGCTATCAA+AGG + tig0019777:38778-38797 None:intergenic 35.0%
!!! TCTTTTTTGGCTATGGTTTG+TGG - tig0019777:38832-38851 Msa1375970:intron 35.0%
!!! CTTTTTTGGCTATGGTTTGT+GGG - tig0019777:38833-38852 Msa1375970:intron 35.0%
! TCCTTTGTTTGTCTCTTCAT+TGG - tig0019777:38861-38880 Msa1375970:intron 35.0%
TCCAATGAAGAGACAAACAA+AGG + tig0019777:38865-38884 None:intergenic 35.0%
AGAGTGAAGACACATATTGA+TGG - tig0019777:38884-38903 Msa1375970:intron 35.0%
GAGTGAAGACACATATTGAT+GGG - tig0019777:38885-38904 Msa1375970:intron 35.0%
!! AAGACACATATTGATGGGTT+AGG - tig0019777:38890-38909 Msa1375970:intron 35.0%
!! AGACACATATTGATGGGTTA+GGG - tig0019777:38891-38910 Msa1375970:intron 35.0%
!! GACAAGAGAACAAGGTATTT+TGG - tig0019777:38918-38937 Msa1375970:intron 35.0%
!! ACTCATTTGAGCCCTTATTT+TGG - tig0019777:38949-38968 Msa1375970:intron 35.0%
GAGACGAGCTTATTATTCTA+AGG + tig0019777:39030-39049 None:intergenic 35.0%
ACAATTGCGATTCGAACTAT+TGG - tig0019777:39094-39113 Msa1375970:intron 35.0%
GGCATTAATGAAATCGGTTA+TGG + tig0019777:39240-39259 None:intergenic 35.0%
! CTACTAACTATCTGTTGCTT+TGG - tig0019777:39308-39327 Msa1375970:intron 35.0%
GAGATATGTTGCACTTACAT+TGG - tig0019777:39371-39390 Msa1375970:intron 35.0%
TGTTTCGGATTAAGAAGAGA+TGG - tig0019777:39830-39849 Msa1375970:CDS 35.0%
GTTTCGGATTAAGAAGAGAT+GGG - tig0019777:39831-39850 Msa1375970:CDS 35.0%
AAATTGCAGGAAATTTCGGT+AGG + tig0019777:39871-39890 None:intergenic 35.0%
TATTCTGCAAAGGTGACATT+TGG - tig0019777:39920-39939 Msa1375970:CDS 35.0%
AGAGTGAGATAAGTGACTAG+TGG - tig0019777:36576-36595 Msa1375970:three_prime_UTR 40.0%
GAGTGAGATAAGTGACTAGT+GGG - tig0019777:36577-36596 Msa1375970:three_prime_UTR 40.0%
CCATAAAATCCAATCCTCAC+CGG - tig0019777:36646-36665 Msa1375970:three_prime_UTR 40.0%
!! AAGATATGGTTTGTTGACGG+CGG + tig0019777:36698-36717 None:intergenic 40.0%
GAGGCTGTCCAAAAATTTAC+AGG + tig0019777:36798-36817 None:intergenic 40.0%
TTCGATATGAAGCTGATCTG+AGG + tig0019777:36872-36891 None:intergenic 40.0%
!! AACTCTTAACTAGAGCACTG+TGG + tig0019777:36925-36944 None:intergenic 40.0%
GTTAAGAGTTCCATTGACGT+TGG - tig0019777:36935-36954 Msa1375970:CDS 40.0%
TCAACAAGGAGAGGTTACAA+TGG - tig0019777:36997-37016 Msa1375970:CDS 40.0%
TGATAGTTGAAGTGCATAGC+CGG + tig0019777:37041-37060 None:intergenic 40.0%
GCAACTTTCAGATTTCCTCT+AGG - tig0019777:37155-37174 Msa1375970:intron 40.0%
TGTAACGAAACTTCACCTAG+AGG + tig0019777:37173-37192 None:intergenic 40.0%
TTCGTTACAAGAGAAAGAGG+AGG - tig0019777:37184-37203 Msa1375970:intron 40.0%
TCTGTCAGTGGGATTCTTAA+AGG - tig0019777:37248-37267 Msa1375970:intron 40.0%
GAAGTTAAGATACCGCTACA+AGG - tig0019777:37319-37338 Msa1375970:intron 40.0%
! TTTGACGGGAGAGAAAGTAT+GGG + tig0019777:37503-37522 None:intergenic 40.0%
ATTTGACGGGAGAGAAAGTA+TGG + tig0019777:37504-37523 None:intergenic 40.0%
AAAATACAGCCTCAGGAAGT+AGG - tig0019777:37804-37823 Msa1375970:intron 40.0%
!! TGTGTAGAGTAGCTTTGGAT+GGG + tig0019777:37849-37868 None:intergenic 40.0%
!! TTGTGTAGAGTAGCTTTGGA+TGG + tig0019777:37850-37869 None:intergenic 40.0%
! AACTTGATAATACGGGGATG+TGG - tig0019777:38027-38046 Msa1375970:intron 40.0%
! ACTTGATAATACGGGGATGT+GGG - tig0019777:38028-38047 Msa1375970:intron 40.0%
! GGTGTTTCCACTTACCTTTT+TGG - tig0019777:38970-38989 Msa1375970:intron 40.0%
TCTTTGGCCAAAAAGGTAAG+TGG + tig0019777:38980-38999 None:intergenic 40.0%
! TAGAGCATCTTTGGCCAAAA+AGG + tig0019777:38987-39006 None:intergenic 40.0%
TTTGGCCAAAGATGCTCTAT+AGG - tig0019777:38988-39007 Msa1375970:intron 40.0%
AGCTCGTCTCCTTACTAATA+TGG - tig0019777:39040-39059 Msa1375970:intron 40.0%
! TAAAGCTGGTTATGATTCGG+AGG - tig0019777:39158-39177 Msa1375970:intron 40.0%
AAATGAGACACGTACCCAAA+GGG + tig0019777:39202-39221 None:intergenic 40.0%
AAAATGAGACACGTACCCAA+AGG + tig0019777:39203-39222 None:intergenic 40.0%
!! TCAACAGGAGTATTCACAGA+TGG + tig0019777:39261-39280 None:intergenic 40.0%
!! TAACTATCTGTTGCTTTGGG+TGG - tig0019777:39312-39331 Msa1375970:intron 40.0%
TGCTTCCTTCCTGCATATAA+AGG - tig0019777:39424-39443 Msa1375970:CDS 40.0%
AGAAGAGATGGGACATTTGA+TGG - tig0019777:39842-39861 Msa1375970:CDS 40.0%
TCCAAGTCCATCTAATTCCT+TGG - tig0019777:39957-39976 Msa1375970:CDS 40.0%
AAGTCCATCTAATTCCTTGG+CGG - tig0019777:39960-39979 Msa1375970:CDS 40.0%
TGAGATAAGTGACTAGTGGG+TGG - tig0019777:36580-36599 Msa1375970:three_prime_UTR 45.0%
! CCGGTGAGGATTGGATTTTA+TGG + tig0019777:36649-36668 None:intergenic 45.0%
TAAAATCCAATCCTCACCGG+CGG - tig0019777:36649-36668 Msa1375970:three_prime_UTR 45.0%
! GAACTCGGTGGTAATTCTGA+GGG + tig0019777:36741-36760 None:intergenic 45.0%
! TATGAAGCTGATCTGAGGCT+CGG + tig0019777:36867-36886 None:intergenic 45.0%
GCACCAGTGAGTTTGAATCT+GGG + tig0019777:36962-36981 None:intergenic 45.0%
AGCACCAGTGAGTTTGAATC+TGG + tig0019777:36963-36982 None:intergenic 45.0%
CATGATGTCAAGGCTCAACA+AGG - tig0019777:36983-37002 Msa1375970:CDS 45.0%
ATAGTTGAAGTGCATAGCCG+GGG + tig0019777:37039-37058 None:intergenic 45.0%
GATAGTTGAAGTGCATAGCC+GGG + tig0019777:37040-37059 None:intergenic 45.0%
AAGAATCCCACTGACAGACA+AGG + tig0019777:37246-37265 None:intergenic 45.0%
! TGTCATTTGCCTTCAAGCGT+AGG - tig0019777:37528-37547 Msa1375970:intron 45.0%
TTTGCCTTCAAGCGTAGGTT+TGG - tig0019777:37533-37552 Msa1375970:intron 45.0%
AAGACCAAACCTACGCTTGA+AGG + tig0019777:37540-37559 None:intergenic 45.0%
TTGTTCCTACCTACTTCCTG+AGG + tig0019777:37816-37835 None:intergenic 45.0%
! CTTGATAATACGGGGATGTG+GGG - tig0019777:38029-38048 Msa1375970:intron 45.0%
ACTACAATGCAAGCACCAAC+TGG - tig0019777:38688-38707 Msa1375970:intron 45.0%
AGGGCTCAAATGAGTGTCTT+AGG + tig0019777:38944-38963 None:intergenic 45.0%
GCTGTCTACAAGCATACCTA+TGG - tig0019777:39120-39139 Msa1375970:intron 45.0%
! GTGACACATTAGCTTCCTTC+AGG - tig0019777:39708-39727 Msa1375970:CDS 45.0%
! CACATTAGCTTCCTTCAGGT+TGG - tig0019777:39712-39731 Msa1375970:CDS 45.0%
!! TTCCTTCAGGTTGGTGATGA+AGG - tig0019777:39721-39740 Msa1375970:CDS 45.0%
!! TTCAGGTTGGTGATGAAGGT+GGG - tig0019777:39725-39744 Msa1375970:CDS 45.0%
! GCCAAGGAATTAGATGGACT+TGG + tig0019777:39961-39980 None:intergenic 45.0%
!! TCAATTATTAAAAAAAAATA+TGG - tig0019777:39896-39915 Msa1375970:CDS 5.0%
!! CAATTATTAAAAAAAAATAT+GGG - tig0019777:39897-39916 Msa1375970:CDS 5.0%
! GATAAGTGACTAGTGGGTGG+TGG - tig0019777:36583-36602 Msa1375970:three_prime_UTR 50.0%
! GTGGAGATGGATTCAGCAAC+CGG - tig0019777:36602-36621 Msa1375970:three_prime_UTR 50.0%
!! ATATGGTTTGTTGACGGCGG+CGG + tig0019777:36695-36714 None:intergenic 50.0%
! CGAACTCGGTGGTAATTCTG+AGG + tig0019777:36742-36761 None:intergenic 50.0%
TGTGGTCTTCAAGGTCGTAG+TGG + tig0019777:36907-36926 None:intergenic 50.0%
!! CTAGAGCACTGTGGTCTTCA+AGG + tig0019777:36916-36935 None:intergenic 50.0%
! GAATCTGGGACCAACGTCAA+TGG + tig0019777:36948-36967 None:intergenic 50.0%
GGTCCCAGATTCAAACTCAC+TGG - tig0019777:36956-36975 Msa1375970:CDS 50.0%
CACTGGTGCTCATGATGTCA+AGG - tig0019777:36973-36992 Msa1375970:CDS 50.0%
TGTCAAGGCTCAACAAGGAG+AGG - tig0019777:36988-37007 Msa1375970:CDS 50.0%
GTTGCTAATATCGCTGACCC+CGG - tig0019777:37019-37038 Msa1375970:intron 50.0%
GAACATACCAATCCAGCGGA+TGG + tig0019777:37073-37092 None:intergenic 50.0%
TACAGCCTCAGGAAGTAGGT+AGG - tig0019777:37808-37827 Msa1375970:intron 50.0%
! TATGATTCGGAGGTTCGCCT+TGG - tig0019777:39168-39187 Msa1375970:intron 50.0%
CACCTTCATCACCAACCTGA+AGG + tig0019777:39726-39745 None:intergenic 50.0%
!! CTTCAGGTTGGTGATGAAGG+TGG - tig0019777:39724-39743 Msa1375970:CDS 50.0%
CACACCGCCAAGGAATTAGA+TGG + tig0019777:39967-39986 None:intergenic 50.0%
CATCTAATTCCTTGGCGGTG+TGG - tig0019777:39965-39984 Msa1375970:CDS 50.0%
!! TGACTAGTGGGTGGTGGAGA+TGG - tig0019777:36589-36608 Msa1375970:three_prime_UTR 55.0%
! ATTCTGAGGGCAGGCCTACT+CGG + tig0019777:36728-36747 None:intergenic 55.0%
! TCGGTGGTAATTCTGAGGGC+AGG + tig0019777:36737-36756 None:intergenic 55.0%
TGCGCTTTCGCTGTCGAACT+CGG + tig0019777:36756-36775 None:intergenic 55.0%
! CAAGGTCGTAGTGGAGGCTA+AGG + tig0019777:36898-36917 None:intergenic 55.0%
GGTCTTCAAGGTCGTAGTGG+AGG + tig0019777:36904-36923 None:intergenic 55.0%
ACCAATCCAGCGGATGGAAG+TGG + tig0019777:37067-37086 None:intergenic 55.0%
AGAGAAAGAGGAGGAGCAGC+AGG - tig0019777:37193-37212 Msa1375970:intron 55.0%
TGTCTGCACTGCCCACTACA+AGG - tig0019777:37286-37305 Msa1375970:intron 55.0%
!! AGGGCACCGACAAGAGAACA+AGG - tig0019777:38910-38929 Msa1375970:intron 55.0%
TAATTCCTTGGCGGTGTGGC+TGG - tig0019777:39969-39988 Msa1375970:CDS 55.0%
CAACTACCGCCGGTGAGGAT+TGG + tig0019777:36658-36677 None:intergenic 60.0%
AGGATCAACTACCGCCGGTG+AGG + tig0019777:36663-36682 None:intergenic 60.0%
GGCAGAGGATCAACTACCGC+CGG + tig0019777:36668-36687 None:intergenic 60.0%
GCTTTCGCTGTCGAACTCGG+TGG + tig0019777:36753-36772 None:intergenic 60.0%
TCAACGCCACTTCCATCCGC+TGG - tig0019777:37058-37077 Msa1375970:intron 60.0%
GCCACTTCCATCCGCTGGAT+TGG - tig0019777:37063-37082 Msa1375970:intron 60.0%
GAAAGAGGAGGAGCAGCAGG+AGG - tig0019777:37196-37215 Msa1375970:intron 60.0%
ATTCGGAGGTTCGCCTTGGC+TGG - tig0019777:39172-39191 Msa1375970:intron 60.0%
TTCGGAGGTTCGCCTTGGCT+GGG - tig0019777:39173-39192 Msa1375970:CDS 60.0%
CCTTGGCTGGGCATCCCTTT+GGG - tig0019777:39185-39204 Msa1375970:CDS 60.0%
!! TGGTTTGTTGACGGCGGCGG+CGG + tig0019777:36692-36711 None:intergenic 65.0%
AGAGGAGGAGCAGCAGGAGG+AGG - tig0019777:37199-37218 Msa1375970:intron 65.0%
GCCTTGGCTGGGCATCCCTT+TGG - tig0019777:39184-39203 Msa1375970:CDS 65.0%
CCCAAAGGGATGCCCAGCCA+AGG + tig0019777:39188-39207 None:intergenic 65.0%
TCTAGCCAGCCACACCGCCA+AGG + tig0019777:39977-39996 None:intergenic 65.0%
TTTGTTGACGGCGGCGGCGG+CGG + tig0019777:36689-36708 None:intergenic 70.0%
! GACGGCGGCGGCGGCGGCAG+AGG + tig0019777:36683-36702 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0019777 gene 36548 40198 36548 ID=Msa1375970;Name=Msa1375970
tig0019777 mRNA 36548 40198 36548 ID=Msa1375970-mRNA-1;Parent=Msa1375970;Name=Msa1375970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=60|1|1|1|1|1|5|337|338
tig0019777 exon 36548 37016 36548 ID=Msa1375970-mRNA-1:exon:4889;Parent=Msa1375970-mRNA-1
tig0019777 exon 37540 37660 37540 ID=Msa1375970-mRNA-1:exon:4888;Parent=Msa1375970-mRNA-1
tig0019777 exon 39173 39267 39173 ID=Msa1375970-mRNA-1:exon:4887;Parent=Msa1375970-mRNA-1
tig0019777 exon 39406 39597 39406 ID=Msa1375970-mRNA-1:exon:4886;Parent=Msa1375970-mRNA-1
tig0019777 exon 39662 40198 39662 ID=Msa1375970-mRNA-1:exon:4885;Parent=Msa1375970-mRNA-1
tig0019777 five_prime_UTR 40139 40198 40139 ID=Msa1375970-mRNA-1:five_prime_utr;Parent=Msa1375970-mRNA-1
tig0019777 CDS 39662 40138 39662 ID=Msa1375970-mRNA-1:cds;Parent=Msa1375970-mRNA-1
tig0019777 CDS 39406 39597 39406 ID=Msa1375970-mRNA-1:cds;Parent=Msa1375970-mRNA-1
tig0019777 CDS 39173 39267 39173 ID=Msa1375970-mRNA-1:cds;Parent=Msa1375970-mRNA-1
tig0019777 CDS 37540 37660 37540 ID=Msa1375970-mRNA-1:cds;Parent=Msa1375970-mRNA-1
tig0019777 CDS 36885 37016 36885 ID=Msa1375970-mRNA-1:cds;Parent=Msa1375970-mRNA-1
tig0019777 three_prime_UTR 36548 36884 36548 ID=Msa1375970-mRNA-1:three_prime_utr;Parent=Msa1375970-mRNA-1
Gene Sequence

>Msa1375970

ATGGATTCAGCAACCGGAAACCCTAATAATTACACGCTCCATAAAATCCAATCCTCACCGGCGGTAGTTGATCCTCTGCCGCCGCCGCCGCCGTCAACAAACCATATCTTGTCATTTCCGAGTAGGCCTGCCCTCAGAATTACCACCGAGTTCGACAGCGAAAGCGCAAACTTCTTCCACAAAGTTTCCTGTAAATTTTTGGACAGCCTCGCCAAATTGAAATTATCTTTTCAGAACAACAGTAAAGGCGATATCTCCGAGCCTCAGATCAGCTTCATATCGAAGCACCTTAGCCTCCACTACGACCTTGAAGACCACAGTGCTCTAGTTAAGAGTTCCATTGACGTTGGTCCCAGATTCAAACTCACTGGTGCTCATGATGTCAAGGCTCAACAAGGAGAGGTTACAATGGTTGCTAATATCGCTGACCCCGGCTATGCACTTCAACTATCAACGCCACTTCCATCCGCTGGATTGCCAAAAGCAACTTTCAGATTTCCTCTAGGTGAAGTTTCGTTACAAGAGAAAGAGGAGGAGCAGCAGGAGGAGGAACAAGTCAAGATAAAAAATTCCTTGTCTGTCAGTGGGATTCTTAAAGGTCAATTTTTGAATGGTGTCTGCACTGCCCACTACAAGGATGATGAATTGAAGTTAAGATACCGCTACAAGGACGACGAGATGTCATTTCTTCCCATACTTTCTCTCCCGTCAAATGATTTGTCATTTGCCTTCAAGCGTAGGTTTGGTCTTTCTGACAAGTTAAGTTACTGGTACAATTGCGATTCGAACTATTGGAGTGCTGTCTACAAGCATACCTATGGTGAAGATTTCAAATTTAAAGCTGGTTATGATTCGGAGGTTCGCCTTGGCTGGGCATCCCTTTGGGTTGGTGATGAAGGTGGGAAAGCAAAAACAGCTCCAATGAAGATGAAAGTTCAATTCATGCTTCAAGTGCCACAAGATGACATAAAATCTTCAGTTTTGATGTTTCGGATTAAGAAGAGATGGGACATTTGA

Protein sequence

>Msa1375970

MDSATGNPNNYTLHKIQSSPAVVDPLPPPPPSTNHILSFPSRPALRITTEFDSESANFFHKVSCKFLDSLAKLKLSFQNNSKGDISEPQISFISKHLSLHYDLEDHSALVKSSIDVGPRFKLTGAHDVKAQQGEVTMVANIADPGYALQLSTPLPSAGLPKATFRFPLGEVSLQEKEEEQQEEEQVKIKNSLSVSGILKGQFLNGVCTAHYKDDELKLRYRYKDDEMSFLPILSLPSNDLSFAFKRRFGLSDKLSYWYNCDSNYWSAVYKHTYGEDFKFKAGYDSEVRLGWASLWVGDEGGKAKTAPMKMKVQFMLQVPQDDIKSSVLMFRIKKRWDI*