Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0484560 | XP_013464449.1 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 1.55e-161 | 459 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0484560 | sp|Q9C8L2|FAP3_ARATH | 57.965 | 226 | 81 | 2 | 54 | 265 | 61 | 286 | 9.64e-86 | 260 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0484560 | A0A072V8X6 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 7.41e-162 | 459 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035050 | Msa0484560 | 0.842243 | 2.913009e-58 | -8.615850e-47 |
Msa0035510 | Msa0484560 | 0.804558 | 2.038991e-49 | -8.615850e-47 |
Msa0037780 | Msa0484560 | 0.824999 | 5.951394e-54 | -8.615850e-47 |
Msa0039140 | Msa0484560 | 0.813231 | 2.841933e-51 | -8.615850e-47 |
Msa0046020 | Msa0484560 | 0.800464 | 1.423746e-48 | -8.615850e-47 |
Msa0069150 | Msa0484560 | 0.818373 | 2.027230e-52 | -8.615850e-47 |
Msa0081400 | Msa0484560 | 0.815543 | 8.758108e-52 | -8.615850e-47 |
Msa0081440 | Msa0484560 | 0.849209 | 3.745525e-60 | -8.615850e-47 |
Msa0092480 | Msa0484560 | 0.810527 | 1.102721e-50 | -8.615850e-47 |
Msa0112880 | Msa0484560 | 0.832437 | 9.460459e-56 | -8.615850e-47 |
Msa0167160 | Msa0484560 | 0.801198 | 1.008135e-48 | -8.615850e-47 |
Msa0173700 | Msa0484560 | 0.822729 | 2.027377e-53 | -8.615850e-47 |
Msa0174100 | Msa0484560 | -0.817478 | 3.230487e-52 | -8.615850e-47 |
Msa0187590 | Msa0484560 | 0.820222 | 7.686016e-53 | -8.615850e-47 |
Msa0195810 | Msa0484560 | 0.814615 | 1.407587e-51 | -8.615850e-47 |
Msa0237650 | Msa0484560 | 0.810284 | 1.244329e-50 | -8.615850e-47 |
Msa0367540 | Msa0484560 | 0.858640 | 7.172578e-63 | -8.615850e-47 |
Msa0373120 | Msa0484560 | 0.812564 | 3.979811e-51 | -8.615850e-47 |
Msa0380270 | Msa0484560 | 0.825783 | 3.883230e-54 | -8.615850e-47 |
Msa0383870 | Msa0484560 | 0.853622 | 2.115854e-61 | -8.615850e-47 |
Msa0415160 | Msa0484560 | 0.875972 | 2.020413e-68 | -8.615850e-47 |
Msa0419150 | Msa0484560 | 0.826909 | 2.094353e-54 | -8.615850e-47 |
Msa0460170 | Msa0484560 | 0.872553 | 2.911500e-67 | -8.615850e-47 |
Msa0464980 | Msa0484560 | 0.826954 | 2.042733e-54 | -8.615850e-47 |
Msa0480090 | Msa0484560 | 0.836681 | 8.114904e-57 | -8.615850e-47 |
Msa0275250 | Msa0484560 | 0.806682 | 7.307744e-50 | -8.615850e-47 |
Msa0293030 | Msa0484560 | 0.971665 | 1.601848e-133 | -8.615850e-47 |
Msa0310730 | Msa0484560 | 0.800576 | 1.350789e-48 | -8.615850e-47 |
Msa0315720 | Msa0484560 | 0.836183 | 1.086123e-56 | -8.615850e-47 |
Msa0326630 | Msa0484560 | 0.858481 | 7.998785e-63 | -8.615850e-47 |
Msa0327990 | Msa0484560 | 0.844448 | 7.514754e-59 | -8.615850e-47 |
Msa0329360 | Msa0484560 | 0.800644 | 1.308336e-48 | -8.615850e-47 |
Msa0484560 | Msa0500610 | 0.817390 | 3.380953e-52 | -8.615850e-47 |
Msa0484560 | Msa0500700 | 0.820585 | 6.345993e-53 | -8.615850e-47 |
Msa0484560 | Msa0512950 | 0.817186 | 3.757926e-52 | -8.615850e-47 |
Msa0484560 | Msa0524470 | 0.821579 | 3.746241e-53 | -8.615850e-47 |
Msa0484560 | Msa0526930 | 0.812220 | 4.731142e-51 | -8.615850e-47 |
Msa0484560 | Msa0532870 | 0.802904 | 4.496896e-49 | -8.615850e-47 |
Msa0484560 | Msa0536970 | 0.814265 | 1.682299e-51 | -8.615850e-47 |
Msa0484560 | Msa0548650 | 0.820036 | 8.479784e-53 | -8.615850e-47 |
Msa0484560 | Msa0557440 | 0.814144 | 1.788970e-51 | -8.615850e-47 |
Msa0484560 | Msa0569580 | 0.815363 | 9.604701e-52 | -8.615850e-47 |
Msa0484560 | Msa0574930 | -0.807716 | 4.412483e-50 | -8.615850e-47 |
Msa0484560 | Msa0576020 | 0.819925 | 8.989608e-53 | -8.615850e-47 |
Msa0484560 | Msa0576080 | 0.807638 | 4.584261e-50 | -8.615850e-47 |
Msa0484560 | Msa0576090 | 0.830296 | 3.181909e-55 | -8.615850e-47 |
Msa0484560 | Msa0580890 | 0.800910 | 1.154721e-48 | -8.615850e-47 |
Msa0484560 | Msa0588110 | 0.801009 | 1.101920e-48 | -8.615850e-47 |
Msa0484560 | Msa0628440 | 0.822283 | 2.573690e-53 | -8.615850e-47 |
Msa0484560 | Msa0638010 | 0.809931 | 1.482255e-50 | -8.615850e-47 |
Msa0484560 | Msa0649160 | 0.801399 | 9.173039e-49 | -8.615850e-47 |
Msa0484560 | Msa0651000 | 0.812288 | 4.572173e-51 | -8.615850e-47 |
Msa0484560 | Msa0693050 | 0.814591 | 1.424860e-51 | -8.615850e-47 |
Msa0484560 | Msa0695250 | 0.805527 | 1.278723e-49 | -8.615850e-47 |
Msa0484560 | Msa0754880 | 0.801171 | 1.021380e-48 | -8.615850e-47 |
Msa0484560 | Msa0793130 | 0.801561 | 8.496303e-49 | -8.615850e-47 |
Msa0484560 | Msa0860630 | 0.806946 | 6.424870e-50 | -8.615850e-47 |
Msa0484560 | Msa0866060 | 0.815399 | 9.432802e-52 | -8.615850e-47 |
Msa0484560 | Msa0945160 | 0.804409 | 2.190848e-49 | -8.615850e-47 |
Msa0484560 | Msa0968470 | 0.811499 | 6.789312e-51 | -8.615850e-47 |
Msa0484560 | Msa1041570 | 0.805410 | 1.352958e-49 | -8.615850e-47 |
Msa0484560 | Msa1063590 | 0.804419 | 2.180280e-49 | -8.615850e-47 |
Msa0484560 | Msa1080610 | 0.817089 | 3.951383e-52 | -8.615850e-47 |
Msa0484560 | Msa1080680 | 0.818680 | 1.727878e-52 | -8.615850e-47 |
Msa0484560 | Msa1083620 | 0.802435 | 5.617982e-49 | -8.615850e-47 |
Msa0484560 | Msa1085610 | 0.809294 | 2.031616e-50 | -8.615850e-47 |
Msa0484560 | Msa1128610 | 0.811677 | 6.211864e-51 | -8.615850e-47 |
Msa0484560 | Msa1129300 | 0.836049 | 1.175165e-56 | -8.615850e-47 |
Msa0484560 | Msa1143810 | 0.842542 | 2.425944e-58 | -8.615850e-47 |
Msa0484560 | Msa1159160 | -0.814062 | 1.864961e-51 | -8.615850e-47 |
Msa0484560 | Msa1166470 | 0.810529 | 1.101890e-50 | -8.615850e-47 |
Msa0484560 | Msa1167150 | 0.820629 | 6.199768e-53 | -8.615850e-47 |
Msa0484560 | Msa1190510 | 0.860730 | 1.684339e-63 | -8.615850e-47 |
Msa0484560 | Msa1211060 | 0.818986 | 1.472285e-52 | -8.615850e-47 |
Msa0484560 | Msa1229670 | 0.808798 | 2.594762e-50 | -8.615850e-47 |
Msa0484560 | Msa1244430 | 0.822285 | 2.571072e-53 | -8.615850e-47 |
Msa0484560 | Msa1249630 | 0.835109 | 2.031509e-56 | -8.615850e-47 |
Msa0484560 | Msa1258030 | 0.808758 | 2.646755e-50 | -8.615850e-47 |
Msa0484560 | Msa1294600 | 0.831210 | 1.899458e-55 | -8.615850e-47 |
Msa0484560 | Msa1298390 | 0.808410 | 3.140106e-50 | -8.615850e-47 |
Msa0484560 | Msa1315880 | 0.804693 | 1.910925e-49 | -8.615850e-47 |
Msa0484560 | Msa1325560 | 0.808195 | 3.490268e-50 | -8.615850e-47 |
Msa0484560 | Msa1341710 | 0.802766 | 4.801674e-49 | -8.615850e-47 |
Msa0484560 | Msa1361670 | 0.802461 | 5.547921e-49 | -8.615850e-47 |
Msa0484560 | Msa1367560 | 0.820741 | 5.842769e-53 | -8.615850e-47 |
Msa0484560 | Msa1375970 | 0.844569 | 6.970855e-59 | -8.615850e-47 |
Msa0484560 | Msa1403840 | 0.828887 | 7.000345e-55 | -8.615850e-47 |
Msa0484560 | Msa1408230 | 0.804657 | 1.944752e-49 | -8.615850e-47 |
Msa0484560 | Msa1408750 | 0.819544 | 1.098785e-52 | -8.615850e-47 |
Msa0484560 | Msa1411930 | 0.846725 | 1.813203e-59 | -8.615850e-47 |
Msa0484560 | Msa1415510 | 0.806373 | 8.488039e-50 | -8.615850e-47 |
Msa0484560 | Msa1431510 | 0.805213 | 1.487642e-49 | -8.615850e-47 |
Msa0484560 | Msa1444770 | 0.805801 | 1.120102e-49 | -8.615850e-47 |
Msa0484560 | Msa1457390 | 0.830084 | 3.583811e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0484560 | MtrunA17_Chr2g0313901 | 87.544 | 281 | 16 | 3 | 1 | 266 | 1 | 277 | 1.43e-165 | 459 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0484560 | AT1G53520.1 | 57.965 | 226 | 81 | 2 | 54 | 265 | 61 | 286 | 9.80e-87 | 260 |
Find 58 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTTGATGGTAAAACTTTC+TGG | 0.189488 | 3_4:-1977197 | Msa0484560:CDS |
AGAAAAGCTTACAAGCAATT+TGG | 0.250679 | 3_4:+1977032 | None:intergenic |
AAAGAGGGAACATAGTTTAA+TGG | 0.283024 | 3_4:+1979989 | None:intergenic |
AAATGAAAGTTCCTTTCTTA+AGG | 0.288163 | 3_4:+1977076 | None:intergenic |
GAAATTGTTACATTGGAAAA+TGG | 0.299638 | 3_4:+1977521 | None:intergenic |
GGCGTCAAGGTCTATGCTTC+TGG | 0.323231 | 3_4:-1977636 | Msa0484560:CDS |
TCAGACTCATTAACATTGTT+TGG | 0.328011 | 3_4:-1978349 | Msa0484560:CDS |
TCAGACATCTTTGAGTTTCC+CGG | 0.335505 | 3_4:-1978377 | Msa0484560:CDS |
AATGAAAGTTCCTTTCTTAA+GGG | 0.338163 | 3_4:+1977077 | None:intergenic |
TGAAATTTCACATTTGTTGC+TGG | 0.346422 | 3_4:+1978397 | None:intergenic |
TGGTGATATGGCATCACTTA+AGG | 0.366207 | 3_4:+1977170 | None:intergenic |
TTGAGCCACTGAAGCTTTCA+AGG | 0.383492 | 3_4:+1976752 | None:intergenic |
GCTTTCAAGGAGGGAGAAAC+AGG | 0.388227 | 3_4:+1976765 | None:intergenic |
AAGCAGCTTGTGGAAGGAAA+TGG | 0.391258 | 3_4:+1979906 | None:intergenic |
TCATTAACATTGTTTGGAAC+TGG | 0.398099 | 3_4:-1978343 | Msa0484560:intron |
AGCAGCTTGTGGAAGGAAAT+GGG | 0.432559 | 3_4:+1979907 | None:intergenic |
CAGGTTTCTGTCTCGTCAGA+GGG | 0.437885 | 3_4:-1976867 | Msa0484560:CDS |
TCATCTTCATCTTCATCTGC+TGG | 0.442683 | 3_4:-1979884 | Msa0484560:intron |
GCAGTTTCATCTGCAGTTGT+TGG | 0.451903 | 3_4:+1977135 | None:intergenic |
ACTCTTGTAAGAGATGTTGA+TGG | 0.451968 | 3_4:-1977210 | Msa0484560:intron |
ATGAAAGTTCCTTTCTTAAG+GGG | 0.452657 | 3_4:+1977078 | None:intergenic |
TTGAGAGAGAAATGCAGAGA+GGG | 0.456436 | 3_4:+1979950 | None:intergenic |
TCCCTCCTTGAAAGCTTCAG+TGG | 0.496514 | 3_4:-1976757 | Msa0484560:CDS |
TCAACTCATTTACGATAGAC+TGG | 0.499366 | 3_4:+1977601 | None:intergenic |
AGAGAGAAATGCAGAGAGGG+GGG | 0.500233 | 3_4:+1979953 | None:intergenic |
CAGTCGAAAGATGTTATTCA+AGG | 0.515053 | 3_4:-1977564 | Msa0484560:CDS |
GCCACTGAAGCTTTCAAGGA+GGG | 0.518744 | 3_4:+1976756 | None:intergenic |
CAGACATCTTTGAGTTTCCC+GGG | 0.519909 | 3_4:-1978376 | Msa0484560:CDS |
GGGTGTGAATAGTGAGAAAG+AGG | 0.523811 | 3_4:+1979973 | None:intergenic |
TGTTGATGGTAAAACTTTCT+GGG | 0.525779 | 3_4:-1977196 | Msa0484560:CDS |
GAGAGAGAAATGCAGAGAGG+GGG | 0.528252 | 3_4:+1979952 | None:intergenic |
TCAGGTTTCTGTCTCGTCAG+AGG | 0.541897 | 3_4:-1976868 | Msa0484560:intron |
AAAGCTTACAAGCAATTTGG+AGG | 0.544044 | 3_4:+1977035 | None:intergenic |
ATCGTGGCATCTGCGGTGGA+TGG | 0.548221 | 3_4:+1976840 | None:intergenic |
TTCAATCGTGGCATCTGCGG+TGG | 0.552672 | 3_4:+1976836 | None:intergenic |
TCGTAAATGAGTTGAATGCT+TGG | 0.553867 | 3_4:-1977593 | Msa0484560:CDS |
AGCTTACAAGCAATTTGGAG+GGG | 0.555652 | 3_4:+1977037 | None:intergenic |
TGAGAGAGAAATGCAGAGAG+GGG | 0.557502 | 3_4:+1979951 | None:intergenic |
GTTAATGAGTCTGAGCAACC+CGG | 0.566583 | 3_4:+1978358 | None:intergenic |
ATGAGTTGAATGCTTGGAAA+GGG | 0.574681 | 3_4:-1977587 | Msa0484560:CDS |
AAGATGAAGCAGCTTGTGGA+AGG | 0.576752 | 3_4:+1979900 | None:intergenic |
AAGCTTACAAGCAATTTGGA+GGG | 0.578278 | 3_4:+1977036 | None:intergenic |
TTGGAAAATGGTCTTGAACA+AGG | 0.586433 | 3_4:+1977533 | None:intergenic |
TGAAAGTTCCTTTCTTAAGG+GGG | 0.594314 | 3_4:+1977079 | None:intergenic |
AATGAGTTGAATGCTTGGAA+AGG | 0.600633 | 3_4:-1977588 | Msa0484560:CDS |
GGCGATCTTGAAAGACGCTA+CGG | 0.603802 | 3_4:+1977100 | None:intergenic |
GATGAAGATGAAGCAGCTTG+TGG | 0.611762 | 3_4:+1979896 | None:intergenic |
GCAGCTTGTGGAAGGAAATG+GGG | 0.619730 | 3_4:+1979908 | None:intergenic |
CACATTTGCAGATTCAATCG+TGG | 0.621754 | 3_4:+1976824 | None:intergenic |
GTTGAGAGAGAAATGCAGAG+AGG | 0.624225 | 3_4:+1979949 | None:intergenic |
CAGCTTGTGGAAGGAAATGG+GGG | 0.640930 | 3_4:+1979909 | None:intergenic |
GGCAAATGCTGAATACATTG+AGG | 0.643782 | 3_4:-1978422 | Msa0484560:CDS |
AGTCGAAAGATGTTATTCAA+GGG | 0.643960 | 3_4:-1977563 | Msa0484560:CDS |
AGATTCAATCGTGGCATCTG+CGG | 0.655352 | 3_4:+1976833 | None:intergenic |
TTAATGAGTCTGAGCAACCC+GGG | 0.664480 | 3_4:+1978359 | None:intergenic |
AGCCACTGAAGCTTTCAAGG+AGG | 0.667896 | 3_4:+1976755 | None:intergenic |
AGGTTTCTGTCTCGTCAGAG+GGG | 0.677404 | 3_4:-1976866 | Msa0484560:CDS |
GGTGTGAATAGTGAGAAAGA+GGG | 0.686116 | 3_4:+1979974 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTAAAAAGAAATAAA+TGG | + | chr3_4:1979307-1979326 | None:intergenic | 10.0% |
!! | AAGAAAAAAAATATCTTAAA+TGG | + | chr3_4:1979815-1979834 | None:intergenic | 10.0% |
!! | TGAATGCATAAAATAATATA+TGG | - | chr3_4:1977327-1977346 | Msa0484560:intron | 15.0% |
!! | GAATGCATAAAATAATATAT+GGG | - | chr3_4:1977328-1977347 | Msa0484560:intron | 15.0% |
!!! | TGCATTTTTTTTTACTTTTT+TGG | - | chr3_4:1977419-1977438 | Msa0484560:intron | 15.0% |
!!! | ATAATATAATTTTATCCTAC+CGG | + | chr3_4:1978047-1978066 | None:intergenic | 15.0% |
!! | AAATATCTAATTCTACAAAA+TGG | + | chr3_4:1978901-1978920 | None:intergenic | 15.0% |
!! | TGAAAACATTATGTTTATAA+TGG | - | chr3_4:1978975-1978994 | Msa0484560:intron | 15.0% |
!!! | TTTTTATTTTTTGTGATTTC+AGG | - | chr3_4:1979912-1979931 | Msa0484560:CDS | 15.0% |
!! | ATTCATTTAATAATGCAGAA+TGG | - | chr3_4:1976986-1977005 | Msa0484560:intron | 20.0% |
!! | AAAATAAGAGATTTCTTCAA+TGG | - | chr3_4:1977681-1977700 | Msa0484560:intron | 20.0% |
!!! | GAAAAAGTTTTTGCTATTAT+TGG | - | chr3_4:1979141-1979160 | Msa0484560:intron | 20.0% |
!! | AATTTGCAATAATTTCTCAA+GGG | + | chr3_4:1979568-1979587 | None:intergenic | 20.0% |
!!! | TAATTTGCAATAATTTCTCA+AGG | + | chr3_4:1979569-1979588 | None:intergenic | 20.0% |
!! | TAAACTTTTGCAGATTGAAT+TGG | - | chr3_4:1977148-1977167 | Msa0484560:CDS | 25.0% |
!!! | AAAATATTCGCCTTTTTTGA+AGG | - | chr3_4:1977223-1977242 | Msa0484560:intron | 25.0% |
!! | CACTTTCTCTTTTTCTTTTT+TGG | + | chr3_4:1977249-1977268 | None:intergenic | 25.0% |
! | ATTATTGCAAATCCAACTAA+TGG | + | chr3_4:1977364-1977383 | None:intergenic | 25.0% |
! | ATTAGTTGGATTTGCAATAA+TGG | - | chr3_4:1977363-1977382 | Msa0484560:intron | 25.0% |
! | ACAAGTAATATATCTGAACA+AGG | - | chr3_4:1977386-1977405 | Msa0484560:intron | 25.0% |
! | AATATATCTGAACAAGGTTA+AGG | - | chr3_4:1977392-1977411 | Msa0484560:intron | 25.0% |
! | TGAAGGGCTAAATATATTTA+TGG | + | chr3_4:1977570-1977589 | None:intergenic | 25.0% |
! | TAGCAAATAGTTGTAAAGAT+TGG | - | chr3_4:1977649-1977668 | Msa0484560:CDS | 25.0% |
! | AGCAAATAGTTGTAAAGATT+GGG | - | chr3_4:1977650-1977669 | Msa0484560:CDS | 25.0% |
! | GACAAATATTGACATCTATT+TGG | - | chr3_4:1978331-1978350 | Msa0484560:intron | 25.0% |
!! | TAACATGACAACATTTTACA+TGG | - | chr3_4:1978525-1978544 | Msa0484560:intron | 25.0% |
!! | ATATCTTTTCTCTTAGAACT+TGG | + | chr3_4:1978561-1978580 | None:intergenic | 25.0% |
! | GGAAAAAGAATGTTGAAAAA+TGG | - | chr3_4:1978825-1978844 | Msa0484560:intron | 25.0% |
!! | AATGGATTCATACATATCTA+AGG | - | chr3_4:1978843-1978862 | Msa0484560:intron | 25.0% |
!! | TTGATAATAACACCTATTTC+AGG | - | chr3_4:1979111-1979130 | Msa0484560:intron | 25.0% |
! | GAAATTGTTACATTGGAAAA+TGG | + | chr3_4:1979280-1979299 | None:intergenic | 25.0% |
! | TGGATATGAAATTGTTACAT+TGG | + | chr3_4:1979287-1979306 | None:intergenic | 25.0% |
! | ATTTGCAATAATTTCTCAAG+GGG | + | chr3_4:1979567-1979586 | None:intergenic | 25.0% |
! | AATGAAAGTTCCTTTCTTAA+GGG | + | chr3_4:1979724-1979743 | None:intergenic | 25.0% |
! | AAATGAAAGTTCCTTTCTTA+AGG | + | chr3_4:1979725-1979744 | None:intergenic | 25.0% |
!!! | GAACTTTCATTTTTTTGACT+TGG | - | chr3_4:1979733-1979752 | Msa0484560:intron | 25.0% |
GTAGAAGATGAAAAACATAG+TGG | + | chr3_4:1976758-1976777 | None:intergenic | 30.0% | |
AAAGAGGGAACATAGTTTAA+TGG | + | chr3_4:1976812-1976831 | None:intergenic | 30.0% | |
!!! | TCTTTTTTGGCCTTCAAAAA+AGG | + | chr3_4:1977236-1977255 | None:intergenic | 30.0% |
AGTGAAAAGTTTGAAGATTC+TGG | - | chr3_4:1977265-1977284 | Msa0484560:intron | 30.0% | |
!! | CAATGAGGTAGTATTTTGAA+GGG | + | chr3_4:1977586-1977605 | None:intergenic | 30.0% |
!! | ACAATGAGGTAGTATTTTGA+AGG | + | chr3_4:1977587-1977606 | None:intergenic | 30.0% |
TAACACAAGTAGAAAAAGTG+AGG | - | chr3_4:1977750-1977769 | Msa0484560:intron | 30.0% | |
TATATGATTGAATACTGCAG+CGG | - | chr3_4:1978355-1978374 | Msa0484560:CDS | 30.0% | |
! | TGAAATTTCACATTTGTTGC+TGG | + | chr3_4:1978404-1978423 | None:intergenic | 30.0% |
TCAGACTCATTAACATTGTT+TGG | - | chr3_4:1978449-1978468 | Msa0484560:intron | 30.0% | |
! | TCATTAACATTGTTTGGAAC+TGG | - | chr3_4:1978455-1978474 | Msa0484560:intron | 30.0% |
TATAATGTCGCAATTTCATG+CGG | - | chr3_4:1978580-1978599 | Msa0484560:intron | 30.0% | |
TCATAACCTTGTCTCTAAAT+TGG | - | chr3_4:1978640-1978659 | Msa0484560:intron | 30.0% | |
TATCAACCAATTTAGAGACA+AGG | + | chr3_4:1978649-1978668 | None:intergenic | 30.0% | |
! | ATTCACAGCAAGATTTTGAA+AGG | + | chr3_4:1978725-1978744 | None:intergenic | 30.0% |
GAAAGATACAGCTTATTATC+AGG | + | chr3_4:1978776-1978795 | None:intergenic | 30.0% | |
CTGTATCTTTCAGTAACTAT+AGG | - | chr3_4:1978785-1978804 | Msa0484560:intron | 30.0% | |
ATAGGCAAAGTGATTCTATT+TGG | - | chr3_4:1978803-1978822 | Msa0484560:intron | 30.0% | |
TAGGCAAAGTGATTCTATTT+GGG | - | chr3_4:1978804-1978823 | Msa0484560:intron | 30.0% | |
! | ATATCTAAGGTTAAACTTCG+AGG | - | chr3_4:1978856-1978875 | Msa0484560:intron | 30.0% |
GCAAAAAAAATCCAAAGGTT+CGG | + | chr3_4:1979010-1979029 | None:intergenic | 30.0% | |
TACTAGACGGAAATAATTAC+GGG | + | chr3_4:1979032-1979051 | None:intergenic | 30.0% | |
CTACTAGACGGAAATAATTA+CGG | + | chr3_4:1979033-1979052 | None:intergenic | 30.0% | |
ACCTACTAAATTCTACTAGA+CGG | + | chr3_4:1979045-1979064 | None:intergenic | 30.0% | |
! | TTTTCTCTGTATCCTGAAAT+AGG | + | chr3_4:1979126-1979145 | None:intergenic | 30.0% |
AGTCGAAAGATGTTATTCAA+GGG | - | chr3_4:1979235-1979254 | Msa0484560:intron | 30.0% | |
ACAACACTTTGCACTAAATT+TGG | - | chr3_4:1979418-1979437 | Msa0484560:intron | 30.0% | |
TTGCACTAAATTTGGTATCA+CGG | - | chr3_4:1979426-1979445 | Msa0484560:intron | 30.0% | |
AATCAGTGTTGTCAAATAAC+CGG | + | chr3_4:1979500-1979519 | None:intergenic | 30.0% | |
!! | ATGTTGATGGTAAAACTTTC+TGG | - | chr3_4:1979601-1979620 | Msa0484560:intron | 30.0% |
!! | TGTTGATGGTAAAACTTTCT+GGG | - | chr3_4:1979602-1979621 | Msa0484560:intron | 30.0% |
!! | TTTTGCAATTCTTGGTGATA+TGG | + | chr3_4:1979643-1979662 | None:intergenic | 30.0% |
ATGAAAGTTCCTTTCTTAAG+GGG | + | chr3_4:1979723-1979742 | None:intergenic | 30.0% | |
AGAAAAGCTTACAAGCAATT+TGG | + | chr3_4:1979769-1979788 | None:intergenic | 30.0% | |
! | GCTCTTTTTGATGTATTTCT+TGG | - | chr3_4:1980003-1980022 | Msa0484560:CDS | 30.0% |
! | ACTTTTGCAGATTGAATTGG+AGG | - | chr3_4:1977151-1977170 | Msa0484560:CDS | 35.0% |
! | CTTTTGCAGATTGAATTGGA+GGG | - | chr3_4:1977152-1977171 | Msa0484560:CDS | 35.0% |
GCAAAAATGCCAAAATTGTC+AGG | + | chr3_4:1977504-1977523 | None:intergenic | 35.0% | |
!! | TACCTCATTGTGCTACTTAT+TGG | - | chr3_4:1977596-1977615 | Msa0484560:CDS | 35.0% |
! | ATCCTTTTTGACAGACAAAG+AGG | - | chr3_4:1977891-1977910 | Msa0484560:intron | 35.0% |
! | TCCTTTTTGACAGACAAAGA+GGG | - | chr3_4:1977892-1977911 | Msa0484560:intron | 35.0% |
! | GAGGGCGTAATTTCTAAATT+AGG | - | chr3_4:1977910-1977929 | Msa0484560:intron | 35.0% |
ATGTTTAGATTTCCATCACG+TGG | - | chr3_4:1977956-1977975 | Msa0484560:intron | 35.0% | |
AAGTGTACTAGTTGGGAATT+GGG | - | chr3_4:1977997-1978016 | Msa0484560:intron | 35.0% | |
AGCTTATTATCAGGCTAGAA+TGG | + | chr3_4:1978767-1978786 | None:intergenic | 35.0% | |
TACGGGCAAAAAAAATCCAA+AGG | + | chr3_4:1979015-1979034 | None:intergenic | 35.0% | |
TCCGTCTAGTAGAATTTAGT+AGG | - | chr3_4:1979041-1979060 | Msa0484560:intron | 35.0% | |
!!! | TTTTGCTATTATTGGCGTCA+AGG | - | chr3_4:1979149-1979168 | Msa0484560:intron | 35.0% |
TCAACTCATTTACGATAGAC+TGG | + | chr3_4:1979200-1979219 | None:intergenic | 35.0% | |
! | TCGTAAATGAGTTGAATGCT+TGG | - | chr3_4:1979205-1979224 | Msa0484560:intron | 35.0% |
! | AATGAGTTGAATGCTTGGAA+AGG | - | chr3_4:1979210-1979229 | Msa0484560:intron | 35.0% |
! | ATGAGTTGAATGCTTGGAAA+GGG | - | chr3_4:1979211-1979230 | Msa0484560:intron | 35.0% |
CAGTCGAAAGATGTTATTCA+AGG | - | chr3_4:1979234-1979253 | Msa0484560:intron | 35.0% | |
! | TTGGAAAATGGTCTTGAACA+AGG | + | chr3_4:1979268-1979287 | None:intergenic | 35.0% |
GTGTTGTCAATAACTGATCA+CGG | - | chr3_4:1979343-1979362 | Msa0484560:intron | 35.0% | |
GATCACGGAAAATAGAAGTT+TGG | - | chr3_4:1979358-1979377 | Msa0484560:intron | 35.0% | |
TGTTGTCAAATAACCGGTTA+TGG | + | chr3_4:1979494-1979513 | None:intergenic | 35.0% | |
ACTCTTGTAAGAGATGTTGA+TGG | - | chr3_4:1979588-1979607 | Msa0484560:intron | 35.0% | |
!!! | GTTGTTGGTTTTGCAATTCT+TGG | + | chr3_4:1979651-1979670 | None:intergenic | 35.0% |
TGAAAGTTCCTTTCTTAAGG+GGG | + | chr3_4:1979722-1979741 | None:intergenic | 35.0% | |
AAGCTTACAAGCAATTTGGA+GGG | + | chr3_4:1979765-1979784 | None:intergenic | 35.0% | |
AAAGCTTACAAGCAATTTGG+AGG | + | chr3_4:1979766-1979785 | None:intergenic | 35.0% | |
TCTTAAATGGCAAATTCTGC+AGG | + | chr3_4:1979802-1979821 | None:intergenic | 35.0% | |
!!! | CATTTTTTGCAAGATAGCGA+AGG | + | chr3_4:1979878-1979897 | None:intergenic | 35.0% |
CTTCGCTATCTTGCAAAAAA+TGG | - | chr3_4:1979876-1979895 | Msa0484560:intron | 35.0% | |
GGTGTGAATAGTGAGAAAGA+GGG | + | chr3_4:1976827-1976846 | None:intergenic | 40.0% | |
TTGAGAGAGAAATGCAGAGA+GGG | + | chr3_4:1976851-1976870 | None:intergenic | 40.0% | |
TCATCTTCATCTTCATCTGC+TGG | - | chr3_4:1976914-1976933 | Msa0484560:intron | 40.0% | |
ATTGAATTGGAGGGCTAACA+TGG | - | chr3_4:1977161-1977180 | Msa0484560:CDS | 40.0% | |
GGTGAATTGTCTCCATTAGT+TGG | - | chr3_4:1977349-1977368 | Msa0484560:intron | 40.0% | |
AAATGCCAAAATTGTCAGGC+CGG | + | chr3_4:1977500-1977519 | None:intergenic | 40.0% | |
CACCAATAAGTAGCACAATG+AGG | + | chr3_4:1977601-1977620 | None:intergenic | 40.0% | |
TGACTGCTAGGAATGAAGTT+TGG | - | chr3_4:1977786-1977805 | Msa0484560:intron | 40.0% | |
TCAGTACGAAGTGTACTAGT+TGG | - | chr3_4:1977989-1978008 | Msa0484560:intron | 40.0% | |
CAGTACGAAGTGTACTAGTT+GGG | - | chr3_4:1977990-1978009 | Msa0484560:intron | 40.0% | |
GAAGTGTACTAGTTGGGAAT+TGG | - | chr3_4:1977996-1978015 | Msa0484560:intron | 40.0% | |
GTTCAACCAAGACCTTTGTA+CGG | + | chr3_4:1978153-1978172 | None:intergenic | 40.0% | |
GGCAAATGCTGAATACATTG+AGG | - | chr3_4:1978376-1978395 | Msa0484560:CDS | 40.0% | |
! | TCAGACATCTTTGAGTTTCC+CGG | - | chr3_4:1978421-1978440 | Msa0484560:CDS | 40.0% |
! | TATGCTGAGATCACTGATTG+TGG | - | chr3_4:1978604-1978623 | Msa0484560:intron | 40.0% |
TGGTGATATGGCATCACTTA+AGG | + | chr3_4:1979631-1979650 | None:intergenic | 40.0% | |
AGCTTACAAGCAATTTGGAG+GGG | + | chr3_4:1979764-1979783 | None:intergenic | 40.0% | |
CACATTTGCAGATTCAATCG+TGG | + | chr3_4:1979977-1979996 | None:intergenic | 40.0% | |
GGGTGTGAATAGTGAGAAAG+AGG | + | chr3_4:1976828-1976847 | None:intergenic | 45.0% | |
TGAGAGAGAAATGCAGAGAG+GGG | + | chr3_4:1976850-1976869 | None:intergenic | 45.0% | |
GTTGAGAGAGAAATGCAGAG+AGG | + | chr3_4:1976852-1976871 | None:intergenic | 45.0% | |
!! | GAAATGGGGGTGTGTTTTAG+AGG | + | chr3_4:1976879-1976898 | None:intergenic | 45.0% |
AGCAGCTTGTGGAAGGAAAT+GGG | + | chr3_4:1976894-1976913 | None:intergenic | 45.0% | |
AAGCAGCTTGTGGAAGGAAA+TGG | + | chr3_4:1976895-1976914 | None:intergenic | 45.0% | |
AAGATGAAGCAGCTTGTGGA+AGG | + | chr3_4:1976901-1976920 | None:intergenic | 45.0% | |
GATGAAGATGAAGCAGCTTG+TGG | + | chr3_4:1976905-1976924 | None:intergenic | 45.0% | |
GAGGGCTAACATGGTTAGAT+TGG | - | chr3_4:1977170-1977189 | Msa0484560:CDS | 45.0% | |
! | GCATTTTTGCCAGTTGAGCT+AGG | - | chr3_4:1977514-1977533 | Msa0484560:intron | 45.0% |
GTAGAAAAAGTGAGGCAGTG+AGG | - | chr3_4:1977758-1977777 | Msa0484560:intron | 45.0% | |
AGTGAGGATATCTGACTGCT+AGG | - | chr3_4:1977774-1977793 | Msa0484560:intron | 45.0% | |
GATGCTGTCATATGAGACTC+AGG | + | chr3_4:1977874-1977893 | None:intergenic | 45.0% | |
GCCCTCTTTGTCTGTCAAAA+AGG | + | chr3_4:1977896-1977915 | None:intergenic | 45.0% | |
CTCCAGTTGCTTGAAAGTTC+CGG | - | chr3_4:1978025-1978044 | Msa0484560:intron | 45.0% | |
TACCGGAACTTTCAAGCAAC+TGG | + | chr3_4:1978030-1978049 | None:intergenic | 45.0% | |
AGTTGCTTGAAAGTTCCGGT+AGG | - | chr3_4:1978029-1978048 | Msa0484560:intron | 45.0% | |
TGTGTCTTACACTCTCCTAC+CGG | - | chr3_4:1978097-1978116 | Msa0484560:intron | 45.0% | |
!! | AATCTTCTAGCGTTGACGCT+TGG | + | chr3_4:1978178-1978197 | None:intergenic | 45.0% |
TTGTCTCGTATTCCAAGCTG+TGG | - | chr3_4:1978227-1978246 | Msa0484560:intron | 45.0% | |
TCGTATTCCAAGCTGTGGAT+AGG | - | chr3_4:1978232-1978251 | Msa0484560:intron | 45.0% | |
CAGAAATCCTATCCACAGCT+TGG | + | chr3_4:1978242-1978261 | None:intergenic | 45.0% | |
! | CAGACATCTTTGAGTTTCCC+GGG | - | chr3_4:1978422-1978441 | Msa0484560:CDS | 45.0% |
TTAATGAGTCTGAGCAACCC+GGG | + | chr3_4:1978442-1978461 | None:intergenic | 45.0% | |
GTTAATGAGTCTGAGCAACC+CGG | + | chr3_4:1978443-1978462 | None:intergenic | 45.0% | |
GGTATTGTATGCCGAACCTT+TGG | - | chr3_4:1978996-1979015 | Msa0484560:intron | 45.0% | |
TATGGCAACGCTATAGCGTA+GGG | + | chr3_4:1979476-1979495 | None:intergenic | 45.0% | |
TTATGGCAACGCTATAGCGT+AGG | + | chr3_4:1979477-1979496 | None:intergenic | 45.0% | |
GCAGTTTCATCTGCAGTTGT+TGG | + | chr3_4:1979666-1979685 | None:intergenic | 45.0% | |
TGGCAAATTCTGCAGGTTGT+AGG | + | chr3_4:1979795-1979814 | None:intergenic | 45.0% | |
AGATTCAATCGTGGCATCTG+CGG | + | chr3_4:1979968-1979987 | None:intergenic | 45.0% | |
TTGAGCCACTGAAGCTTTCA+AGG | + | chr3_4:1980049-1980068 | None:intergenic | 45.0% | |
!! | AAAAATCAAATATAAATAAA+TGG | + | chr3_4:1976959-1976978 | None:intergenic | 5.0% |
AGAGAGAAATGCAGAGAGGG+GGG | + | chr3_4:1976848-1976867 | None:intergenic | 50.0% | |
GAGAGAGAAATGCAGAGAGG+GGG | + | chr3_4:1976849-1976868 | None:intergenic | 50.0% | |
CAGCTTGTGGAAGGAAATGG+GGG | + | chr3_4:1976892-1976911 | None:intergenic | 50.0% | |
GCAGCTTGTGGAAGGAAATG+GGG | + | chr3_4:1976893-1976912 | None:intergenic | 50.0% | |
TAGAAACTCACACGCACCGA+TGG | - | chr3_4:1977442-1977461 | Msa0484560:intron | 50.0% | |
! | GATGTCCGGCCTGACAATTT+TGG | - | chr3_4:1977492-1977511 | Msa0484560:intron | 50.0% |
TCCAGAAGTCCTAGCTCAAC+TGG | + | chr3_4:1977526-1977545 | None:intergenic | 50.0% | |
TTGAGCTAGGACTTCTGGAC+TGG | - | chr3_4:1977527-1977546 | Msa0484560:intron | 50.0% | |
AGATTTCCATCACGTGGCTG+AGG | - | chr3_4:1977962-1977981 | Msa0484560:intron | 50.0% | |
GAGGATCCAAGACCGTACAA+AGG | - | chr3_4:1978138-1978157 | Msa0484560:intron | 50.0% | |
CCAAGACCTTTGTACGGTCT+TGG | + | chr3_4:1978147-1978166 | None:intergenic | 50.0% | |
CCAAGACCGTACAAAGGTCT+TGG | - | chr3_4:1978144-1978163 | Msa0484560:intron | 50.0% | |
ATGGCAACGCTATAGCGTAG+GGG | + | chr3_4:1979475-1979494 | None:intergenic | 50.0% | |
CGCTATAGCGTTGCCATAAC+CGG | - | chr3_4:1979478-1979497 | Msa0484560:intron | 50.0% | |
GGCGATCTTGAAAGACGCTA+CGG | + | chr3_4:1979701-1979720 | None:intergenic | 50.0% | |
CAAGATCGCCCCCTTAAGAA+AGG | - | chr3_4:1979711-1979730 | Msa0484560:intron | 50.0% | |
TCAGGTTTCTGTCTCGTCAG+AGG | - | chr3_4:1979930-1979949 | Msa0484560:CDS | 50.0% | |
CAGGTTTCTGTCTCGTCAGA+GGG | - | chr3_4:1979931-1979950 | Msa0484560:CDS | 50.0% | |
AGGTTTCTGTCTCGTCAGAG+GGG | - | chr3_4:1979932-1979951 | Msa0484560:CDS | 50.0% | |
GCTTTCAAGGAGGGAGAAAC+AGG | + | chr3_4:1980036-1980055 | None:intergenic | 50.0% | |
TCCCTCCTTGAAAGCTTCAG+TGG | - | chr3_4:1980041-1980060 | Msa0484560:CDS | 50.0% | |
GCCACTGAAGCTTTCAAGGA+GGG | + | chr3_4:1980045-1980064 | None:intergenic | 50.0% | |
AGCCACTGAAGCTTTCAAGG+AGG | + | chr3_4:1980046-1980065 | None:intergenic | 50.0% | |
TCAAACCCCGGCTCTTCCAT+CGG | + | chr3_4:1977461-1977480 | None:intergenic | 55.0% | |
TGAACCCCGGTCATGATGTC+CGG | - | chr3_4:1977478-1977497 | Msa0484560:intron | 55.0% | |
GCCAGTTGAGCTAGGACTTC+TGG | - | chr3_4:1977522-1977541 | Msa0484560:intron | 55.0% | |
GATAGACCTCAGCCACGTGA+TGG | + | chr3_4:1977971-1977990 | None:intergenic | 55.0% | |
AGTCAGCGGAAAGTTCCGGT+AGG | + | chr3_4:1978115-1978134 | None:intergenic | 55.0% | |
TACCGGAACTTTCCGCTGAC+TGG | - | chr3_4:1978114-1978133 | Msa0484560:intron | 55.0% | |
CTCCAGTCAGCGGAAAGTTC+CGG | + | chr3_4:1978119-1978138 | None:intergenic | 55.0% | |
! | GAACTTTCCGCTGACTGGAG+AGG | - | chr3_4:1978119-1978138 | Msa0484560:intron | 55.0% |
CTTGGATCCTCTCCAGTCAG+CGG | + | chr3_4:1978129-1978148 | None:intergenic | 55.0% | |
GGCGTCAAGGTCTATGCTTC+TGG | - | chr3_4:1979162-1979181 | Msa0484560:intron | 55.0% | |
TTCAATCGTGGCATCTGCGG+TGG | + | chr3_4:1979965-1979984 | None:intergenic | 55.0% | |
! | ACACGCACCGATGGAAGAGC+CGG | - | chr3_4:1977451-1977470 | Msa0484560:intron | 60.0% |
AAGAGCCGGGGTTTGAACCC+CGG | - | chr3_4:1977465-1977484 | Msa0484560:intron | 60.0% | |
CATGACCGGGGTTCAAACCC+CGG | + | chr3_4:1977473-1977492 | None:intergenic | 60.0% | |
TCAGGCCGGACATCATGACC+GGG | + | chr3_4:1977486-1977505 | None:intergenic | 60.0% | |
GTCAGGCCGGACATCATGAC+CGG | + | chr3_4:1977487-1977506 | None:intergenic | 60.0% | |
ATCGTGGCATCTGCGGTGGA+TGG | + | chr3_4:1979961-1979980 | None:intergenic | 60.0% | |
! | CACGCACCGATGGAAGAGCC+GGG | - | chr3_4:1977452-1977471 | Msa0484560:intron | 65.0% |
! | ACGCACCGATGGAAGAGCCG+GGG | - | chr3_4:1977453-1977472 | Msa0484560:intron | 65.0% |
CAGGCCGGACATCATGACCG+GGG | + | chr3_4:1977485-1977504 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 1976728 | 1980092 | 1976728 | ID=Msa0484560;Name=Msa0484560 |
chr3_4 | mRNA | 1976728 | 1980092 | 1976728 | ID=Msa0484560-mRNA-1;Parent=Msa0484560;Name=Msa0484560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|266 |
chr3_4 | exon | 1979885 | 1980092 | 1979885 | ID=Msa0484560-mRNA-1:exon:616;Parent=Msa0484560-mRNA-1 |
chr3_4 | exon | 1978344 | 1978445 | 1978344 | ID=Msa0484560-mRNA-1:exon:615;Parent=Msa0484560-mRNA-1 |
chr3_4 | exon | 1977532 | 1977687 | 1977532 | ID=Msa0484560-mRNA-1:exon:614;Parent=Msa0484560-mRNA-1 |
chr3_4 | exon | 1977044 | 1977219 | 1977044 | ID=Msa0484560-mRNA-1:exon:613;Parent=Msa0484560-mRNA-1 |
chr3_4 | exon | 1976728 | 1976886 | 1976728 | ID=Msa0484560-mRNA-1:exon:612;Parent=Msa0484560-mRNA-1 |
chr3_4 | CDS | 1979885 | 1980092 | 1979885 | ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1 |
chr3_4 | CDS | 1978344 | 1978445 | 1978344 | ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1 |
chr3_4 | CDS | 1977532 | 1977687 | 1977532 | ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1 |
chr3_4 | CDS | 1977044 | 1977219 | 1977044 | ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1 |
chr3_4 | CDS | 1976728 | 1976886 | 1976728 | ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1 |
Gene Sequence |
Protein sequence |