AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484560 MtrunA17_Chr2g0313901 87.544 281 16 3 1 266 1 277 1.43e-165 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484560 AT1G53520.1 57.965 226 81 2 54 265 61 286 9.80e-87 260

Find 58 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTGATGGTAAAACTTTC+TGG 0.189488 3_4:-1977197 Msa0484560:CDS
AGAAAAGCTTACAAGCAATT+TGG 0.250679 3_4:+1977032 None:intergenic
AAAGAGGGAACATAGTTTAA+TGG 0.283024 3_4:+1979989 None:intergenic
AAATGAAAGTTCCTTTCTTA+AGG 0.288163 3_4:+1977076 None:intergenic
GAAATTGTTACATTGGAAAA+TGG 0.299638 3_4:+1977521 None:intergenic
GGCGTCAAGGTCTATGCTTC+TGG 0.323231 3_4:-1977636 Msa0484560:CDS
TCAGACTCATTAACATTGTT+TGG 0.328011 3_4:-1978349 Msa0484560:CDS
TCAGACATCTTTGAGTTTCC+CGG 0.335505 3_4:-1978377 Msa0484560:CDS
AATGAAAGTTCCTTTCTTAA+GGG 0.338163 3_4:+1977077 None:intergenic
TGAAATTTCACATTTGTTGC+TGG 0.346422 3_4:+1978397 None:intergenic
TGGTGATATGGCATCACTTA+AGG 0.366207 3_4:+1977170 None:intergenic
TTGAGCCACTGAAGCTTTCA+AGG 0.383492 3_4:+1976752 None:intergenic
GCTTTCAAGGAGGGAGAAAC+AGG 0.388227 3_4:+1976765 None:intergenic
AAGCAGCTTGTGGAAGGAAA+TGG 0.391258 3_4:+1979906 None:intergenic
TCATTAACATTGTTTGGAAC+TGG 0.398099 3_4:-1978343 Msa0484560:intron
AGCAGCTTGTGGAAGGAAAT+GGG 0.432559 3_4:+1979907 None:intergenic
CAGGTTTCTGTCTCGTCAGA+GGG 0.437885 3_4:-1976867 Msa0484560:CDS
TCATCTTCATCTTCATCTGC+TGG 0.442683 3_4:-1979884 Msa0484560:intron
GCAGTTTCATCTGCAGTTGT+TGG 0.451903 3_4:+1977135 None:intergenic
ACTCTTGTAAGAGATGTTGA+TGG 0.451968 3_4:-1977210 Msa0484560:intron
ATGAAAGTTCCTTTCTTAAG+GGG 0.452657 3_4:+1977078 None:intergenic
TTGAGAGAGAAATGCAGAGA+GGG 0.456436 3_4:+1979950 None:intergenic
TCCCTCCTTGAAAGCTTCAG+TGG 0.496514 3_4:-1976757 Msa0484560:CDS
TCAACTCATTTACGATAGAC+TGG 0.499366 3_4:+1977601 None:intergenic
AGAGAGAAATGCAGAGAGGG+GGG 0.500233 3_4:+1979953 None:intergenic
CAGTCGAAAGATGTTATTCA+AGG 0.515053 3_4:-1977564 Msa0484560:CDS
GCCACTGAAGCTTTCAAGGA+GGG 0.518744 3_4:+1976756 None:intergenic
CAGACATCTTTGAGTTTCCC+GGG 0.519909 3_4:-1978376 Msa0484560:CDS
GGGTGTGAATAGTGAGAAAG+AGG 0.523811 3_4:+1979973 None:intergenic
TGTTGATGGTAAAACTTTCT+GGG 0.525779 3_4:-1977196 Msa0484560:CDS
GAGAGAGAAATGCAGAGAGG+GGG 0.528252 3_4:+1979952 None:intergenic
TCAGGTTTCTGTCTCGTCAG+AGG 0.541897 3_4:-1976868 Msa0484560:intron
AAAGCTTACAAGCAATTTGG+AGG 0.544044 3_4:+1977035 None:intergenic
ATCGTGGCATCTGCGGTGGA+TGG 0.548221 3_4:+1976840 None:intergenic
TTCAATCGTGGCATCTGCGG+TGG 0.552672 3_4:+1976836 None:intergenic
TCGTAAATGAGTTGAATGCT+TGG 0.553867 3_4:-1977593 Msa0484560:CDS
AGCTTACAAGCAATTTGGAG+GGG 0.555652 3_4:+1977037 None:intergenic
TGAGAGAGAAATGCAGAGAG+GGG 0.557502 3_4:+1979951 None:intergenic
GTTAATGAGTCTGAGCAACC+CGG 0.566583 3_4:+1978358 None:intergenic
ATGAGTTGAATGCTTGGAAA+GGG 0.574681 3_4:-1977587 Msa0484560:CDS
AAGATGAAGCAGCTTGTGGA+AGG 0.576752 3_4:+1979900 None:intergenic
AAGCTTACAAGCAATTTGGA+GGG 0.578278 3_4:+1977036 None:intergenic
TTGGAAAATGGTCTTGAACA+AGG 0.586433 3_4:+1977533 None:intergenic
TGAAAGTTCCTTTCTTAAGG+GGG 0.594314 3_4:+1977079 None:intergenic
AATGAGTTGAATGCTTGGAA+AGG 0.600633 3_4:-1977588 Msa0484560:CDS
GGCGATCTTGAAAGACGCTA+CGG 0.603802 3_4:+1977100 None:intergenic
GATGAAGATGAAGCAGCTTG+TGG 0.611762 3_4:+1979896 None:intergenic
GCAGCTTGTGGAAGGAAATG+GGG 0.619730 3_4:+1979908 None:intergenic
CACATTTGCAGATTCAATCG+TGG 0.621754 3_4:+1976824 None:intergenic
GTTGAGAGAGAAATGCAGAG+AGG 0.624225 3_4:+1979949 None:intergenic
CAGCTTGTGGAAGGAAATGG+GGG 0.640930 3_4:+1979909 None:intergenic
GGCAAATGCTGAATACATTG+AGG 0.643782 3_4:-1978422 Msa0484560:CDS
AGTCGAAAGATGTTATTCAA+GGG 0.643960 3_4:-1977563 Msa0484560:CDS
AGATTCAATCGTGGCATCTG+CGG 0.655352 3_4:+1976833 None:intergenic
TTAATGAGTCTGAGCAACCC+GGG 0.664480 3_4:+1978359 None:intergenic
AGCCACTGAAGCTTTCAAGG+AGG 0.667896 3_4:+1976755 None:intergenic
AGGTTTCTGTCTCGTCAGAG+GGG 0.677404 3_4:-1976866 Msa0484560:CDS
GGTGTGAATAGTGAGAAAGA+GGG 0.686116 3_4:+1979974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAAAAAGAAATAAA+TGG + chr3_4:1979307-1979326 None:intergenic 10.0%
!! AAGAAAAAAAATATCTTAAA+TGG + chr3_4:1979815-1979834 None:intergenic 10.0%
!! TGAATGCATAAAATAATATA+TGG - chr3_4:1977327-1977346 Msa0484560:intron 15.0%
!! GAATGCATAAAATAATATAT+GGG - chr3_4:1977328-1977347 Msa0484560:intron 15.0%
!!! TGCATTTTTTTTTACTTTTT+TGG - chr3_4:1977419-1977438 Msa0484560:intron 15.0%
!!! ATAATATAATTTTATCCTAC+CGG + chr3_4:1978047-1978066 None:intergenic 15.0%
!! AAATATCTAATTCTACAAAA+TGG + chr3_4:1978901-1978920 None:intergenic 15.0%
!! TGAAAACATTATGTTTATAA+TGG - chr3_4:1978975-1978994 Msa0484560:intron 15.0%
!!! TTTTTATTTTTTGTGATTTC+AGG - chr3_4:1979912-1979931 Msa0484560:CDS 15.0%
!! ATTCATTTAATAATGCAGAA+TGG - chr3_4:1976986-1977005 Msa0484560:intron 20.0%
!! AAAATAAGAGATTTCTTCAA+TGG - chr3_4:1977681-1977700 Msa0484560:intron 20.0%
!!! GAAAAAGTTTTTGCTATTAT+TGG - chr3_4:1979141-1979160 Msa0484560:intron 20.0%
!! AATTTGCAATAATTTCTCAA+GGG + chr3_4:1979568-1979587 None:intergenic 20.0%
!!! TAATTTGCAATAATTTCTCA+AGG + chr3_4:1979569-1979588 None:intergenic 20.0%
!! TAAACTTTTGCAGATTGAAT+TGG - chr3_4:1977148-1977167 Msa0484560:CDS 25.0%
!!! AAAATATTCGCCTTTTTTGA+AGG - chr3_4:1977223-1977242 Msa0484560:intron 25.0%
!! CACTTTCTCTTTTTCTTTTT+TGG + chr3_4:1977249-1977268 None:intergenic 25.0%
! ATTATTGCAAATCCAACTAA+TGG + chr3_4:1977364-1977383 None:intergenic 25.0%
! ATTAGTTGGATTTGCAATAA+TGG - chr3_4:1977363-1977382 Msa0484560:intron 25.0%
! ACAAGTAATATATCTGAACA+AGG - chr3_4:1977386-1977405 Msa0484560:intron 25.0%
! AATATATCTGAACAAGGTTA+AGG - chr3_4:1977392-1977411 Msa0484560:intron 25.0%
! TGAAGGGCTAAATATATTTA+TGG + chr3_4:1977570-1977589 None:intergenic 25.0%
! TAGCAAATAGTTGTAAAGAT+TGG - chr3_4:1977649-1977668 Msa0484560:CDS 25.0%
! AGCAAATAGTTGTAAAGATT+GGG - chr3_4:1977650-1977669 Msa0484560:CDS 25.0%
! GACAAATATTGACATCTATT+TGG - chr3_4:1978331-1978350 Msa0484560:intron 25.0%
!! TAACATGACAACATTTTACA+TGG - chr3_4:1978525-1978544 Msa0484560:intron 25.0%
!! ATATCTTTTCTCTTAGAACT+TGG + chr3_4:1978561-1978580 None:intergenic 25.0%
! GGAAAAAGAATGTTGAAAAA+TGG - chr3_4:1978825-1978844 Msa0484560:intron 25.0%
!! AATGGATTCATACATATCTA+AGG - chr3_4:1978843-1978862 Msa0484560:intron 25.0%
!! TTGATAATAACACCTATTTC+AGG - chr3_4:1979111-1979130 Msa0484560:intron 25.0%
! GAAATTGTTACATTGGAAAA+TGG + chr3_4:1979280-1979299 None:intergenic 25.0%
! TGGATATGAAATTGTTACAT+TGG + chr3_4:1979287-1979306 None:intergenic 25.0%
! ATTTGCAATAATTTCTCAAG+GGG + chr3_4:1979567-1979586 None:intergenic 25.0%
! AATGAAAGTTCCTTTCTTAA+GGG + chr3_4:1979724-1979743 None:intergenic 25.0%
! AAATGAAAGTTCCTTTCTTA+AGG + chr3_4:1979725-1979744 None:intergenic 25.0%
!!! GAACTTTCATTTTTTTGACT+TGG - chr3_4:1979733-1979752 Msa0484560:intron 25.0%
GTAGAAGATGAAAAACATAG+TGG + chr3_4:1976758-1976777 None:intergenic 30.0%
AAAGAGGGAACATAGTTTAA+TGG + chr3_4:1976812-1976831 None:intergenic 30.0%
!!! TCTTTTTTGGCCTTCAAAAA+AGG + chr3_4:1977236-1977255 None:intergenic 30.0%
AGTGAAAAGTTTGAAGATTC+TGG - chr3_4:1977265-1977284 Msa0484560:intron 30.0%
!! CAATGAGGTAGTATTTTGAA+GGG + chr3_4:1977586-1977605 None:intergenic 30.0%
!! ACAATGAGGTAGTATTTTGA+AGG + chr3_4:1977587-1977606 None:intergenic 30.0%
TAACACAAGTAGAAAAAGTG+AGG - chr3_4:1977750-1977769 Msa0484560:intron 30.0%
TATATGATTGAATACTGCAG+CGG - chr3_4:1978355-1978374 Msa0484560:CDS 30.0%
! TGAAATTTCACATTTGTTGC+TGG + chr3_4:1978404-1978423 None:intergenic 30.0%
TCAGACTCATTAACATTGTT+TGG - chr3_4:1978449-1978468 Msa0484560:intron 30.0%
! TCATTAACATTGTTTGGAAC+TGG - chr3_4:1978455-1978474 Msa0484560:intron 30.0%
TATAATGTCGCAATTTCATG+CGG - chr3_4:1978580-1978599 Msa0484560:intron 30.0%
TCATAACCTTGTCTCTAAAT+TGG - chr3_4:1978640-1978659 Msa0484560:intron 30.0%
TATCAACCAATTTAGAGACA+AGG + chr3_4:1978649-1978668 None:intergenic 30.0%
! ATTCACAGCAAGATTTTGAA+AGG + chr3_4:1978725-1978744 None:intergenic 30.0%
GAAAGATACAGCTTATTATC+AGG + chr3_4:1978776-1978795 None:intergenic 30.0%
CTGTATCTTTCAGTAACTAT+AGG - chr3_4:1978785-1978804 Msa0484560:intron 30.0%
ATAGGCAAAGTGATTCTATT+TGG - chr3_4:1978803-1978822 Msa0484560:intron 30.0%
TAGGCAAAGTGATTCTATTT+GGG - chr3_4:1978804-1978823 Msa0484560:intron 30.0%
! ATATCTAAGGTTAAACTTCG+AGG - chr3_4:1978856-1978875 Msa0484560:intron 30.0%
GCAAAAAAAATCCAAAGGTT+CGG + chr3_4:1979010-1979029 None:intergenic 30.0%
TACTAGACGGAAATAATTAC+GGG + chr3_4:1979032-1979051 None:intergenic 30.0%
CTACTAGACGGAAATAATTA+CGG + chr3_4:1979033-1979052 None:intergenic 30.0%
ACCTACTAAATTCTACTAGA+CGG + chr3_4:1979045-1979064 None:intergenic 30.0%
! TTTTCTCTGTATCCTGAAAT+AGG + chr3_4:1979126-1979145 None:intergenic 30.0%
AGTCGAAAGATGTTATTCAA+GGG - chr3_4:1979235-1979254 Msa0484560:intron 30.0%
ACAACACTTTGCACTAAATT+TGG - chr3_4:1979418-1979437 Msa0484560:intron 30.0%
TTGCACTAAATTTGGTATCA+CGG - chr3_4:1979426-1979445 Msa0484560:intron 30.0%
AATCAGTGTTGTCAAATAAC+CGG + chr3_4:1979500-1979519 None:intergenic 30.0%
!! ATGTTGATGGTAAAACTTTC+TGG - chr3_4:1979601-1979620 Msa0484560:intron 30.0%
!! TGTTGATGGTAAAACTTTCT+GGG - chr3_4:1979602-1979621 Msa0484560:intron 30.0%
!! TTTTGCAATTCTTGGTGATA+TGG + chr3_4:1979643-1979662 None:intergenic 30.0%
ATGAAAGTTCCTTTCTTAAG+GGG + chr3_4:1979723-1979742 None:intergenic 30.0%
AGAAAAGCTTACAAGCAATT+TGG + chr3_4:1979769-1979788 None:intergenic 30.0%
! GCTCTTTTTGATGTATTTCT+TGG - chr3_4:1980003-1980022 Msa0484560:CDS 30.0%
! ACTTTTGCAGATTGAATTGG+AGG - chr3_4:1977151-1977170 Msa0484560:CDS 35.0%
! CTTTTGCAGATTGAATTGGA+GGG - chr3_4:1977152-1977171 Msa0484560:CDS 35.0%
GCAAAAATGCCAAAATTGTC+AGG + chr3_4:1977504-1977523 None:intergenic 35.0%
!! TACCTCATTGTGCTACTTAT+TGG - chr3_4:1977596-1977615 Msa0484560:CDS 35.0%
! ATCCTTTTTGACAGACAAAG+AGG - chr3_4:1977891-1977910 Msa0484560:intron 35.0%
! TCCTTTTTGACAGACAAAGA+GGG - chr3_4:1977892-1977911 Msa0484560:intron 35.0%
! GAGGGCGTAATTTCTAAATT+AGG - chr3_4:1977910-1977929 Msa0484560:intron 35.0%
ATGTTTAGATTTCCATCACG+TGG - chr3_4:1977956-1977975 Msa0484560:intron 35.0%
AAGTGTACTAGTTGGGAATT+GGG - chr3_4:1977997-1978016 Msa0484560:intron 35.0%
AGCTTATTATCAGGCTAGAA+TGG + chr3_4:1978767-1978786 None:intergenic 35.0%
TACGGGCAAAAAAAATCCAA+AGG + chr3_4:1979015-1979034 None:intergenic 35.0%
TCCGTCTAGTAGAATTTAGT+AGG - chr3_4:1979041-1979060 Msa0484560:intron 35.0%
!!! TTTTGCTATTATTGGCGTCA+AGG - chr3_4:1979149-1979168 Msa0484560:intron 35.0%
TCAACTCATTTACGATAGAC+TGG + chr3_4:1979200-1979219 None:intergenic 35.0%
! TCGTAAATGAGTTGAATGCT+TGG - chr3_4:1979205-1979224 Msa0484560:intron 35.0%
! AATGAGTTGAATGCTTGGAA+AGG - chr3_4:1979210-1979229 Msa0484560:intron 35.0%
! ATGAGTTGAATGCTTGGAAA+GGG - chr3_4:1979211-1979230 Msa0484560:intron 35.0%
CAGTCGAAAGATGTTATTCA+AGG - chr3_4:1979234-1979253 Msa0484560:intron 35.0%
! TTGGAAAATGGTCTTGAACA+AGG + chr3_4:1979268-1979287 None:intergenic 35.0%
GTGTTGTCAATAACTGATCA+CGG - chr3_4:1979343-1979362 Msa0484560:intron 35.0%
GATCACGGAAAATAGAAGTT+TGG - chr3_4:1979358-1979377 Msa0484560:intron 35.0%
TGTTGTCAAATAACCGGTTA+TGG + chr3_4:1979494-1979513 None:intergenic 35.0%
ACTCTTGTAAGAGATGTTGA+TGG - chr3_4:1979588-1979607 Msa0484560:intron 35.0%
!!! GTTGTTGGTTTTGCAATTCT+TGG + chr3_4:1979651-1979670 None:intergenic 35.0%
TGAAAGTTCCTTTCTTAAGG+GGG + chr3_4:1979722-1979741 None:intergenic 35.0%
AAGCTTACAAGCAATTTGGA+GGG + chr3_4:1979765-1979784 None:intergenic 35.0%
AAAGCTTACAAGCAATTTGG+AGG + chr3_4:1979766-1979785 None:intergenic 35.0%
TCTTAAATGGCAAATTCTGC+AGG + chr3_4:1979802-1979821 None:intergenic 35.0%
!!! CATTTTTTGCAAGATAGCGA+AGG + chr3_4:1979878-1979897 None:intergenic 35.0%
CTTCGCTATCTTGCAAAAAA+TGG - chr3_4:1979876-1979895 Msa0484560:intron 35.0%
GGTGTGAATAGTGAGAAAGA+GGG + chr3_4:1976827-1976846 None:intergenic 40.0%
TTGAGAGAGAAATGCAGAGA+GGG + chr3_4:1976851-1976870 None:intergenic 40.0%
TCATCTTCATCTTCATCTGC+TGG - chr3_4:1976914-1976933 Msa0484560:intron 40.0%
ATTGAATTGGAGGGCTAACA+TGG - chr3_4:1977161-1977180 Msa0484560:CDS 40.0%
GGTGAATTGTCTCCATTAGT+TGG - chr3_4:1977349-1977368 Msa0484560:intron 40.0%
AAATGCCAAAATTGTCAGGC+CGG + chr3_4:1977500-1977519 None:intergenic 40.0%
CACCAATAAGTAGCACAATG+AGG + chr3_4:1977601-1977620 None:intergenic 40.0%
TGACTGCTAGGAATGAAGTT+TGG - chr3_4:1977786-1977805 Msa0484560:intron 40.0%
TCAGTACGAAGTGTACTAGT+TGG - chr3_4:1977989-1978008 Msa0484560:intron 40.0%
CAGTACGAAGTGTACTAGTT+GGG - chr3_4:1977990-1978009 Msa0484560:intron 40.0%
GAAGTGTACTAGTTGGGAAT+TGG - chr3_4:1977996-1978015 Msa0484560:intron 40.0%
GTTCAACCAAGACCTTTGTA+CGG + chr3_4:1978153-1978172 None:intergenic 40.0%
GGCAAATGCTGAATACATTG+AGG - chr3_4:1978376-1978395 Msa0484560:CDS 40.0%
! TCAGACATCTTTGAGTTTCC+CGG - chr3_4:1978421-1978440 Msa0484560:CDS 40.0%
! TATGCTGAGATCACTGATTG+TGG - chr3_4:1978604-1978623 Msa0484560:intron 40.0%
TGGTGATATGGCATCACTTA+AGG + chr3_4:1979631-1979650 None:intergenic 40.0%
AGCTTACAAGCAATTTGGAG+GGG + chr3_4:1979764-1979783 None:intergenic 40.0%
CACATTTGCAGATTCAATCG+TGG + chr3_4:1979977-1979996 None:intergenic 40.0%
GGGTGTGAATAGTGAGAAAG+AGG + chr3_4:1976828-1976847 None:intergenic 45.0%
TGAGAGAGAAATGCAGAGAG+GGG + chr3_4:1976850-1976869 None:intergenic 45.0%
GTTGAGAGAGAAATGCAGAG+AGG + chr3_4:1976852-1976871 None:intergenic 45.0%
!! GAAATGGGGGTGTGTTTTAG+AGG + chr3_4:1976879-1976898 None:intergenic 45.0%
AGCAGCTTGTGGAAGGAAAT+GGG + chr3_4:1976894-1976913 None:intergenic 45.0%
AAGCAGCTTGTGGAAGGAAA+TGG + chr3_4:1976895-1976914 None:intergenic 45.0%
AAGATGAAGCAGCTTGTGGA+AGG + chr3_4:1976901-1976920 None:intergenic 45.0%
GATGAAGATGAAGCAGCTTG+TGG + chr3_4:1976905-1976924 None:intergenic 45.0%
GAGGGCTAACATGGTTAGAT+TGG - chr3_4:1977170-1977189 Msa0484560:CDS 45.0%
! GCATTTTTGCCAGTTGAGCT+AGG - chr3_4:1977514-1977533 Msa0484560:intron 45.0%
GTAGAAAAAGTGAGGCAGTG+AGG - chr3_4:1977758-1977777 Msa0484560:intron 45.0%
AGTGAGGATATCTGACTGCT+AGG - chr3_4:1977774-1977793 Msa0484560:intron 45.0%
GATGCTGTCATATGAGACTC+AGG + chr3_4:1977874-1977893 None:intergenic 45.0%
GCCCTCTTTGTCTGTCAAAA+AGG + chr3_4:1977896-1977915 None:intergenic 45.0%
CTCCAGTTGCTTGAAAGTTC+CGG - chr3_4:1978025-1978044 Msa0484560:intron 45.0%
TACCGGAACTTTCAAGCAAC+TGG + chr3_4:1978030-1978049 None:intergenic 45.0%
AGTTGCTTGAAAGTTCCGGT+AGG - chr3_4:1978029-1978048 Msa0484560:intron 45.0%
TGTGTCTTACACTCTCCTAC+CGG - chr3_4:1978097-1978116 Msa0484560:intron 45.0%
!! AATCTTCTAGCGTTGACGCT+TGG + chr3_4:1978178-1978197 None:intergenic 45.0%
TTGTCTCGTATTCCAAGCTG+TGG - chr3_4:1978227-1978246 Msa0484560:intron 45.0%
TCGTATTCCAAGCTGTGGAT+AGG - chr3_4:1978232-1978251 Msa0484560:intron 45.0%
CAGAAATCCTATCCACAGCT+TGG + chr3_4:1978242-1978261 None:intergenic 45.0%
! CAGACATCTTTGAGTTTCCC+GGG - chr3_4:1978422-1978441 Msa0484560:CDS 45.0%
TTAATGAGTCTGAGCAACCC+GGG + chr3_4:1978442-1978461 None:intergenic 45.0%
GTTAATGAGTCTGAGCAACC+CGG + chr3_4:1978443-1978462 None:intergenic 45.0%
GGTATTGTATGCCGAACCTT+TGG - chr3_4:1978996-1979015 Msa0484560:intron 45.0%
TATGGCAACGCTATAGCGTA+GGG + chr3_4:1979476-1979495 None:intergenic 45.0%
TTATGGCAACGCTATAGCGT+AGG + chr3_4:1979477-1979496 None:intergenic 45.0%
GCAGTTTCATCTGCAGTTGT+TGG + chr3_4:1979666-1979685 None:intergenic 45.0%
TGGCAAATTCTGCAGGTTGT+AGG + chr3_4:1979795-1979814 None:intergenic 45.0%
AGATTCAATCGTGGCATCTG+CGG + chr3_4:1979968-1979987 None:intergenic 45.0%
TTGAGCCACTGAAGCTTTCA+AGG + chr3_4:1980049-1980068 None:intergenic 45.0%
!! AAAAATCAAATATAAATAAA+TGG + chr3_4:1976959-1976978 None:intergenic 5.0%
AGAGAGAAATGCAGAGAGGG+GGG + chr3_4:1976848-1976867 None:intergenic 50.0%
GAGAGAGAAATGCAGAGAGG+GGG + chr3_4:1976849-1976868 None:intergenic 50.0%
CAGCTTGTGGAAGGAAATGG+GGG + chr3_4:1976892-1976911 None:intergenic 50.0%
GCAGCTTGTGGAAGGAAATG+GGG + chr3_4:1976893-1976912 None:intergenic 50.0%
TAGAAACTCACACGCACCGA+TGG - chr3_4:1977442-1977461 Msa0484560:intron 50.0%
! GATGTCCGGCCTGACAATTT+TGG - chr3_4:1977492-1977511 Msa0484560:intron 50.0%
TCCAGAAGTCCTAGCTCAAC+TGG + chr3_4:1977526-1977545 None:intergenic 50.0%
TTGAGCTAGGACTTCTGGAC+TGG - chr3_4:1977527-1977546 Msa0484560:intron 50.0%
AGATTTCCATCACGTGGCTG+AGG - chr3_4:1977962-1977981 Msa0484560:intron 50.0%
GAGGATCCAAGACCGTACAA+AGG - chr3_4:1978138-1978157 Msa0484560:intron 50.0%
CCAAGACCTTTGTACGGTCT+TGG + chr3_4:1978147-1978166 None:intergenic 50.0%
CCAAGACCGTACAAAGGTCT+TGG - chr3_4:1978144-1978163 Msa0484560:intron 50.0%
ATGGCAACGCTATAGCGTAG+GGG + chr3_4:1979475-1979494 None:intergenic 50.0%
CGCTATAGCGTTGCCATAAC+CGG - chr3_4:1979478-1979497 Msa0484560:intron 50.0%
GGCGATCTTGAAAGACGCTA+CGG + chr3_4:1979701-1979720 None:intergenic 50.0%
CAAGATCGCCCCCTTAAGAA+AGG - chr3_4:1979711-1979730 Msa0484560:intron 50.0%
TCAGGTTTCTGTCTCGTCAG+AGG - chr3_4:1979930-1979949 Msa0484560:CDS 50.0%
CAGGTTTCTGTCTCGTCAGA+GGG - chr3_4:1979931-1979950 Msa0484560:CDS 50.0%
AGGTTTCTGTCTCGTCAGAG+GGG - chr3_4:1979932-1979951 Msa0484560:CDS 50.0%
GCTTTCAAGGAGGGAGAAAC+AGG + chr3_4:1980036-1980055 None:intergenic 50.0%
TCCCTCCTTGAAAGCTTCAG+TGG - chr3_4:1980041-1980060 Msa0484560:CDS 50.0%
GCCACTGAAGCTTTCAAGGA+GGG + chr3_4:1980045-1980064 None:intergenic 50.0%
AGCCACTGAAGCTTTCAAGG+AGG + chr3_4:1980046-1980065 None:intergenic 50.0%
TCAAACCCCGGCTCTTCCAT+CGG + chr3_4:1977461-1977480 None:intergenic 55.0%
TGAACCCCGGTCATGATGTC+CGG - chr3_4:1977478-1977497 Msa0484560:intron 55.0%
GCCAGTTGAGCTAGGACTTC+TGG - chr3_4:1977522-1977541 Msa0484560:intron 55.0%
GATAGACCTCAGCCACGTGA+TGG + chr3_4:1977971-1977990 None:intergenic 55.0%
AGTCAGCGGAAAGTTCCGGT+AGG + chr3_4:1978115-1978134 None:intergenic 55.0%
TACCGGAACTTTCCGCTGAC+TGG - chr3_4:1978114-1978133 Msa0484560:intron 55.0%
CTCCAGTCAGCGGAAAGTTC+CGG + chr3_4:1978119-1978138 None:intergenic 55.0%
! GAACTTTCCGCTGACTGGAG+AGG - chr3_4:1978119-1978138 Msa0484560:intron 55.0%
CTTGGATCCTCTCCAGTCAG+CGG + chr3_4:1978129-1978148 None:intergenic 55.0%
GGCGTCAAGGTCTATGCTTC+TGG - chr3_4:1979162-1979181 Msa0484560:intron 55.0%
TTCAATCGTGGCATCTGCGG+TGG + chr3_4:1979965-1979984 None:intergenic 55.0%
! ACACGCACCGATGGAAGAGC+CGG - chr3_4:1977451-1977470 Msa0484560:intron 60.0%
AAGAGCCGGGGTTTGAACCC+CGG - chr3_4:1977465-1977484 Msa0484560:intron 60.0%
CATGACCGGGGTTCAAACCC+CGG + chr3_4:1977473-1977492 None:intergenic 60.0%
TCAGGCCGGACATCATGACC+GGG + chr3_4:1977486-1977505 None:intergenic 60.0%
GTCAGGCCGGACATCATGAC+CGG + chr3_4:1977487-1977506 None:intergenic 60.0%
ATCGTGGCATCTGCGGTGGA+TGG + chr3_4:1979961-1979980 None:intergenic 60.0%
! CACGCACCGATGGAAGAGCC+GGG - chr3_4:1977452-1977471 Msa0484560:intron 65.0%
! ACGCACCGATGGAAGAGCCG+GGG - chr3_4:1977453-1977472 Msa0484560:intron 65.0%
CAGGCCGGACATCATGACCG+GGG + chr3_4:1977485-1977504 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 1976728 1980092 1976728 ID=Msa0484560;Name=Msa0484560
chr3_4 mRNA 1976728 1980092 1976728 ID=Msa0484560-mRNA-1;Parent=Msa0484560;Name=Msa0484560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|266
chr3_4 exon 1979885 1980092 1979885 ID=Msa0484560-mRNA-1:exon:616;Parent=Msa0484560-mRNA-1
chr3_4 exon 1978344 1978445 1978344 ID=Msa0484560-mRNA-1:exon:615;Parent=Msa0484560-mRNA-1
chr3_4 exon 1977532 1977687 1977532 ID=Msa0484560-mRNA-1:exon:614;Parent=Msa0484560-mRNA-1
chr3_4 exon 1977044 1977219 1977044 ID=Msa0484560-mRNA-1:exon:613;Parent=Msa0484560-mRNA-1
chr3_4 exon 1976728 1976886 1976728 ID=Msa0484560-mRNA-1:exon:612;Parent=Msa0484560-mRNA-1
chr3_4 CDS 1979885 1980092 1979885 ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1
chr3_4 CDS 1978344 1978445 1978344 ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1
chr3_4 CDS 1977532 1977687 1977532 ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1
chr3_4 CDS 1977044 1977219 1977044 ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1
chr3_4 CDS 1976728 1976886 1976728 ID=Msa0484560-mRNA-1:cds;Parent=Msa0484560-mRNA-1
Gene Sequence

>Msa0484560

ATGTTCACAACTGTTGCAGCTTCAGCACCACTATGTTTTTCATCTTCTACAAGATTCTATGTTGACAAAAGAATCTCAAAGCCATTAAACTATGTTCCCTCTTTCTCACTATTCACACCCCCCTCTCTGCATTTCTCTCTCAACAACACCTCTAAAACACACCCCCATTTCCTTCCACAAGCTGCTTCATCTTCATCTTCATCTGCTGCGGCAAATGCTGAATACATTGAGGAACCAGCAACAAATGTGAAATTTCAGACATCTTTGAGTTTCCCGGGTTGCTCAGACTCATTAACATTGTTTGGAACTGGATACAGAGAAAAAGTTTTTGCTATTATTGGCGTCAAGGTCTATGCTTCTGGACTGTATCTAAACCAGTCTATCGTAAATGAGTTGAATGCTTGGAAAGGGCAGTCGAAAGATGTTATTCAAGGGAACTCTTCCTTGTTCAAGACCATTTTCCAATATGTTGATGGTAAAACTTTCTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTGCAAAACCAACAACTGCAGATGAAACTGCTTTGACTACTTTCCGTAGCGTCTTTCAAGATCGCCCCCTTAAGAAAGGAACTTTCATTTTTTTGACTTGGTTAAACCCCTCCAAATTGCTTGTTTCTGTCTCGTCAGAGGGGATACCATCCACCGCAGATGCCACGATTGAATCTGCAAATGTGACTTATGCTCTTTTTGATGTATTTCTTGGAGACAGTCCTGTTTCTCCCTCCTTGAAAGCTTCAGTGGCTCAAAGCTTGTCAAAAGTACTCGAGTAA

Protein sequence

>Msa0484560

MFTTVAASAPLCFSSSTRFYVDKRISKPLNYVPSFSLFTPPSLHFSLNNTSKTHPHFLPQAASSSSSSAAANAEYIEEPATNVKFQTSLSFPGCSDSLTLFGTGYREKVFAIIGVKVYASGLYLNQSIVNELNAWKGQSKDVIQGNSSLFKTIFQYVDGKTFWDALSDAISPRIAKPTTADETALTTFRSVFQDRPLKKGTFIFLTWLNPSKLLVSVSSEGIPSTADATIESANVTYALFDVFLGDSPVSPSLKASVAQSLSKVLE*