Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297030 | XP_013464840.1 | 97.436 | 312 | 6 | 2 | 3 | 314 | 4 | 313 | 0.0 | 618 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297030 | sp|Q0V7X4|FIT_ARATH | 52.252 | 333 | 120 | 10 | 1 | 314 | 5 | 317 | 7.37e-103 | 306 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0297030 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0163690 | Msa0297030 | 0.804107 | 2.531801e-49 | -8.615850e-47 |
Msa0257760 | Msa0297030 | 0.816197 | 6.260576e-52 | -8.615850e-47 |
Msa0282830 | Msa0297030 | 0.836564 | 8.691615e-57 | -8.615850e-47 |
Msa0297030 | Msa0321240 | 0.832090 | 1.152650e-55 | -8.615850e-47 |
Msa0297030 | Msa0345050 | 0.801307 | 9.578040e-49 | -8.615850e-47 |
Msa0297030 | Msa0357550 | 0.812041 | 5.175339e-51 | -8.615850e-47 |
Msa0297030 | Msa0357560 | 0.804320 | 2.286284e-49 | -8.615850e-47 |
Msa0297030 | Msa0395220 | 0.802588 | 5.223738e-49 | -8.615850e-47 |
Msa0297030 | Msa0566280 | 0.816443 | 5.515783e-52 | -8.615850e-47 |
Msa0297030 | Msa0643230 | 0.802155 | 6.415387e-49 | -8.615850e-47 |
Msa0297030 | Msa0709140 | 0.800890 | 1.165806e-48 | -8.615850e-47 |
Msa0297030 | Msa0784780 | -0.813067 | 3.088190e-51 | -8.615850e-47 |
Msa0297030 | Msa0858250 | -0.809053 | 2.288419e-50 | -8.615850e-47 |
Msa0297030 | Msa0873910 | 0.800186 | 1.621576e-48 | -8.615850e-47 |
Msa0297030 | Msa0896930 | 0.832648 | 8.384860e-56 | -8.615850e-47 |
Msa0297030 | Msa0906660 | 0.806273 | 8.911693e-50 | -8.615850e-47 |
Msa0297030 | Msa0910170 | 0.808232 | 3.426755e-50 | -8.615850e-47 |
Msa0297030 | Msa0925940 | 0.802740 | 4.860513e-49 | -8.615850e-47 |
Msa0297030 | Msa1007900 | 0.824981 | 6.011776e-54 | -8.615850e-47 |
Msa0297030 | Msa1049380 | 0.806075 | 9.810805e-50 | -8.615850e-47 |
Msa0297030 | Msa1092310 | 0.814140 | 1.793169e-51 | -8.615850e-47 |
Msa0297030 | Msa1136690 | 0.819673 | 1.026445e-52 | -8.615850e-47 |
Msa0297030 | Msa1136760 | 0.804434 | 2.164362e-49 | -8.615850e-47 |
Msa0297030 | Msa1259570 | 0.824933 | 6.169884e-54 | -8.615850e-47 |
Msa0297030 | Msa1307530 | 0.800280 | 1.552232e-48 | -8.615850e-47 |
Msa0297030 | Msa1372810 | 0.995661 | 1.504442e-218 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297030 | MtrunA17_Chr2g0320291 | 97.436 | 312 | 6 | 2 | 3 | 314 | 4 | 313 | 0.0 | 618 |
Msa0297030 | MtrunA17_Chr4g0028071 | 64.526 | 327 | 93 | 10 | 2 | 314 | 16 | 333 | 3.77e-131 | 376 |
Msa0297030 | MtrunA17_Chr8g0365711 | 34.591 | 159 | 83 | 3 | 126 | 270 | 236 | 387 | 2.27e-20 | 90.9 |
Msa0297030 | MtrunA17_Chr1g0211081 | 29.362 | 235 | 128 | 7 | 63 | 259 | 239 | 473 | 1.67e-19 | 89.0 |
Msa0297030 | MtrunA17_Chr3g0131691 | 30.645 | 186 | 108 | 4 | 89 | 259 | 257 | 436 | 2.25e-17 | 82.4 |
Msa0297030 | MtrunA17_Chr2g0298751 | 26.203 | 187 | 117 | 3 | 133 | 301 | 51 | 234 | 1.70e-16 | 77.4 |
Msa0297030 | MtrunA17_Chr8g0366751 | 30.864 | 162 | 93 | 5 | 138 | 283 | 466 | 624 | 7.31e-15 | 75.1 |
Msa0297030 | MtrunA17_Chr4g0048851 | 31.548 | 168 | 108 | 4 | 122 | 288 | 37 | 198 | 1.19e-14 | 71.6 |
Msa0297030 | MtrunA17_Chr4g0054571 | 29.825 | 171 | 97 | 3 | 98 | 258 | 127 | 284 | 2.83e-14 | 72.4 |
Msa0297030 | MtrunA17_Chr5g0411341 | 30.488 | 164 | 91 | 5 | 138 | 283 | 497 | 655 | 4.08e-14 | 72.8 |
Msa0297030 | MtrunA17_Chr7g0275821 | 30.464 | 151 | 97 | 4 | 138 | 287 | 256 | 399 | 6.85e-14 | 71.6 |
Msa0297030 | MtrunA17_Chr7g0252041 | 28.859 | 149 | 90 | 2 | 133 | 266 | 285 | 432 | 9.48e-14 | 71.6 |
Msa0297030 | MtrunA17_Chr4g0049331 | 26.404 | 178 | 124 | 5 | 97 | 270 | 99 | 273 | 6.69e-12 | 65.1 |
Msa0297030 | MtrunA17_Chr8g0346151 | 33.708 | 89 | 54 | 1 | 138 | 221 | 283 | 371 | 8.99e-12 | 65.5 |
Msa0297030 | MtrunA17_Chr8g0346161 | 28.421 | 190 | 98 | 9 | 113 | 276 | 259 | 436 | 1.97e-11 | 64.3 |
Msa0297030 | MtrunA17_Chr1g0153241 | 32.143 | 112 | 64 | 3 | 79 | 186 | 44 | 147 | 2.02e-11 | 63.5 |
Msa0297030 | MtrunA17_Chr7g0260841 | 48.077 | 52 | 27 | 0 | 138 | 189 | 359 | 410 | 2.59e-11 | 64.3 |
Msa0297030 | MtrunA17_Chr5g0400671 | 30.435 | 138 | 85 | 4 | 136 | 268 | 156 | 287 | 9.04e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0297030 | AT2G28160.1 | 52.252 | 333 | 120 | 10 | 1 | 314 | 5 | 317 | 7.49e-104 | 306 |
Msa0297030 | AT2G28160.2 | 51.682 | 327 | 119 | 10 | 1 | 308 | 5 | 311 | 9.67e-100 | 296 |
Msa0297030 | AT4G29930.6 | 34.682 | 173 | 108 | 3 | 133 | 305 | 53 | 220 | 3.02e-24 | 99.0 |
Msa0297030 | AT4G29930.2 | 34.682 | 173 | 105 | 4 | 133 | 305 | 53 | 217 | 4.02e-23 | 95.9 |
Msa0297030 | AT5G57150.1 | 33.333 | 192 | 107 | 6 | 122 | 297 | 40 | 226 | 9.32e-23 | 95.1 |
Msa0297030 | AT4G29930.5 | 35.099 | 151 | 92 | 3 | 133 | 283 | 53 | 197 | 2.97e-22 | 93.6 |
Msa0297030 | AT5G57150.2 | 34.078 | 179 | 99 | 5 | 122 | 284 | 41 | 216 | 3.19e-22 | 93.2 |
Msa0297030 | AT5G57150.5 | 35.758 | 165 | 87 | 5 | 122 | 270 | 40 | 201 | 3.95e-22 | 92.8 |
Msa0297030 | AT5G57150.3 | 35.758 | 165 | 87 | 5 | 122 | 270 | 41 | 202 | 5.30e-22 | 92.4 |
Msa0297030 | AT5G57150.4 | 35.758 | 165 | 87 | 5 | 122 | 270 | 41 | 202 | 1.59e-21 | 92.4 |
Msa0297030 | AT2G16910.1 | 36.025 | 161 | 77 | 4 | 132 | 267 | 312 | 471 | 3.51e-21 | 94.4 |
Msa0297030 | AT4G29930.1 | 31.156 | 199 | 106 | 5 | 133 | 305 | 53 | 246 | 4.80e-20 | 87.8 |
Msa0297030 | AT4G29930.3 | 31.073 | 177 | 93 | 4 | 133 | 283 | 53 | 226 | 5.55e-19 | 85.1 |
Msa0297030 | AT4G29930.7 | 31.073 | 177 | 93 | 4 | 133 | 283 | 53 | 226 | 5.55e-19 | 85.1 |
Msa0297030 | AT2G46510.1 | 30.726 | 179 | 99 | 6 | 119 | 288 | 372 | 534 | 1.14e-17 | 84.0 |
Msa0297030 | AT1G01260.1 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
Msa0297030 | AT1G01260.2 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
Msa0297030 | AT1G01260.3 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
Msa0297030 | AT4G29930.4 | 47.143 | 70 | 37 | 0 | 133 | 202 | 53 | 122 | 1.56e-15 | 73.9 |
Msa0297030 | AT4G17880.1 | 28.188 | 149 | 103 | 3 | 138 | 283 | 420 | 567 | 2.22e-14 | 73.9 |
Msa0297030 | AT1G12860.2 | 29.932 | 147 | 85 | 4 | 133 | 266 | 266 | 407 | 1.71e-13 | 70.9 |
Msa0297030 | AT1G12860.1 | 29.932 | 147 | 85 | 4 | 133 | 266 | 266 | 407 | 2.07e-13 | 70.9 |
Msa0297030 | AT3G26744.1 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
Msa0297030 | AT3G26744.4 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
Msa0297030 | AT3G26744.2 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
Msa0297030 | AT3G26744.6 | 31.293 | 147 | 87 | 4 | 133 | 266 | 306 | 451 | 3.02e-13 | 70.5 |
Msa0297030 | AT1G32640.1 | 30.000 | 150 | 100 | 4 | 138 | 283 | 456 | 604 | 2.79e-12 | 67.8 |
Msa0297030 | AT5G46760.1 | 29.091 | 165 | 85 | 6 | 138 | 283 | 419 | 570 | 7.98e-12 | 66.2 |
Msa0297030 | AT2G22750.1 | 26.582 | 158 | 105 | 3 | 127 | 275 | 119 | 274 | 2.62e-11 | 63.9 |
Msa0297030 | AT2G22750.4 | 26.582 | 158 | 105 | 3 | 127 | 275 | 147 | 302 | 2.69e-11 | 63.9 |
Msa0297030 | AT2G22750.5 | 26.582 | 158 | 105 | 3 | 127 | 275 | 143 | 298 | 2.80e-11 | 63.9 |
Msa0297030 | AT2G22750.3 | 26.582 | 158 | 105 | 3 | 127 | 275 | 147 | 302 | 3.11e-11 | 63.9 |
Msa0297030 | AT2G22750.2 | 26.582 | 158 | 105 | 3 | 127 | 275 | 119 | 274 | 3.15e-11 | 63.5 |
Msa0297030 | AT1G10610.3 | 45.161 | 62 | 34 | 0 | 132 | 193 | 165 | 226 | 6.85e-11 | 62.8 |
Msa0297030 | AT4G37850.2 | 25.909 | 220 | 123 | 9 | 61 | 258 | 80 | 281 | 7.51e-11 | 62.8 |
Msa0297030 | AT4G37850.1 | 25.909 | 220 | 123 | 9 | 61 | 258 | 80 | 281 | 7.51e-11 | 62.8 |
Msa0297030 | AT1G10610.2 | 45.161 | 62 | 34 | 0 | 132 | 193 | 232 | 293 | 8.71e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTTGAATGCTGAGGTTTC+TGG | 0.189821 | 2_3:+50649528 | Msa0297030:CDS |
TGTTATGATGGAGAGGTTAA+AGG | 0.231584 | 2_3:+50649102 | Msa0297030:CDS |
TATTGTTGTGATCAAATAAT+AGG | 0.246719 | 2_3:-50649011 | None:intergenic |
GCTTTATGCATTGCGTTCTT+TGG | 0.304101 | 2_3:+50649272 | Msa0297030:CDS |
ATGGATAAGGCCTCTATAAT+TGG | 0.313859 | 2_3:+50649462 | Msa0297030:CDS |
TCGATAAATTGATCAAAGTT+TGG | 0.327610 | 2_3:-50648880 | None:intergenic |
GTCATGCAGCTCAAAGTTAT+TGG | 0.328211 | 2_3:-50648845 | None:intergenic |
CTAATTACCTTTGTAATGTT+GGG | 0.360034 | 2_3:-50649297 | None:intergenic |
ACTAATTACCTTTGTAATGT+TGG | 0.365158 | 2_3:-50649298 | None:intergenic |
ACTTCCTAGCTTGTGCTTGA+AGG | 0.382012 | 2_3:-50649509 | None:intergenic |
ACCTTCAAAATTTGAAGCTA+TGG | 0.386796 | 2_3:+50650285 | Msa0297030:CDS |
GGCTCCTTCTCTTGTTATGA+TGG | 0.389333 | 2_3:+50649090 | Msa0297030:CDS |
GAGCCAATTGTTGTAGGGCT+TGG | 0.390918 | 2_3:-50649072 | None:intergenic |
CAATGTTCAAAATTCAAACT+TGG | 0.395586 | 2_3:+50650092 | Msa0297030:CDS |
TTGTGATCAAATAATAGGTT+TGG | 0.409993 | 2_3:-50649006 | None:intergenic |
TTGGAGGAATTGAAAGAAGT+TGG | 0.410526 | 2_3:-50648987 | None:intergenic |
CAATTTATCGATTTAATTCG+AGG | 0.430612 | 2_3:+50648892 | Msa0297030:CDS |
AATCCAAGCCCTACAACAAT+TGG | 0.433423 | 2_3:+50649069 | Msa0297030:CDS |
GAGGAGGAGAGGCAGGATGA+AGG | 0.445153 | 2_3:+50649245 | Msa0297030:CDS |
CTGAGAGGAGGAGGAGAGGC+AGG | 0.453081 | 2_3:+50649238 | Msa0297030:CDS |
GAGAAGGAGCCAATTGTTGT+AGG | 0.453789 | 2_3:-50649078 | None:intergenic |
GAAGATGCAATATCTAACTT+TGG | 0.471684 | 2_3:+50648922 | Msa0297030:CDS |
CCTTCAAAATTTGAAGCTAT+GGG | 0.474141 | 2_3:+50650286 | Msa0297030:CDS |
CCTCTCAGAAATGAGAGTCT+TGG | 0.475407 | 2_3:-50649223 | None:intergenic |
CTCTCATTTCTGAGAGGAGG+AGG | 0.478718 | 2_3:+50649229 | Msa0297030:CDS |
AATTTGCAAGAAAATTATCC+AGG | 0.484959 | 2_3:+50649626 | Msa0297030:CDS |
TCAGTGTCTGAAAATTATCA+AGG | 0.485823 | 2_3:+50649567 | Msa0297030:CDS |
GATGGAGAGGTTAAAGGAGA+AGG | 0.491246 | 2_3:+50649108 | Msa0297030:CDS |
CAATGAAGCAATCATTGATA+AGG | 0.492027 | 2_3:-50648951 | None:intergenic |
TGATCAAATAATAGGTTTGG+AGG | 0.499808 | 2_3:-50649003 | None:intergenic |
CTTCTCTTGTTATGATGGAG+AGG | 0.500496 | 2_3:+50649095 | Msa0297030:CDS |
ATGGCATGAATTCAAAGCCT+TGG | 0.500719 | 2_3:-50650328 | None:intergenic |
CATGCAGTGGCTCAAAATGA+TGG | 0.501968 | 2_3:-50650347 | None:intergenic |
TACTGCATCTCCAATTATAG+AGG | 0.518020 | 2_3:-50649472 | None:intergenic |
AATAACCTCTTTCCTCCACT+TGG | 0.518798 | 2_3:-50649993 | None:intergenic |
TATCCACGTACAGATGGATA+AGG | 0.530307 | 2_3:+50649449 | Msa0297030:intron |
AGAAGGAGCCAATTGTTGTA+GGG | 0.535853 | 2_3:-50649077 | None:intergenic |
AAAGGAGAAGGAGAAAATGA+TGG | 0.542463 | 2_3:+50649120 | Msa0297030:CDS |
GAAGGAGAAAATGATGGAGG+TGG | 0.543991 | 2_3:+50649126 | Msa0297030:CDS |
CTCTCCATCATAACAAGAGA+AGG | 0.545524 | 2_3:-50649094 | None:intergenic |
CAATCGATGATGCTAACCCT+AGG | 0.549718 | 2_3:+50649184 | Msa0297030:CDS |
ACCCTAGGGCTAAAACTGAT+AGG | 0.553134 | 2_3:+50649199 | Msa0297030:CDS |
AATTTGAAGCTATGGGTGGC+TGG | 0.562736 | 2_3:+50650293 | Msa0297030:CDS |
GGTGTTCTCTAGTGAGTCCA+TGG | 0.563816 | 2_3:-50648824 | None:intergenic |
ATGACCTTCAAGCACAAGCT+AGG | 0.564350 | 2_3:+50649505 | Msa0297030:CDS |
ATTTCTGAGAGGAGGAGGAG+AGG | 0.573269 | 2_3:+50649234 | Msa0297030:CDS |
AGTAGCTGCTTCATTGTACA+AGG | 0.575970 | 2_3:+50650047 | Msa0297030:CDS |
ATGTTCCAAGTGGAGGAAAG+AGG | 0.591850 | 2_3:+50649988 | Msa0297030:CDS |
TTTGGTTCCCAACATTACAA+AGG | 0.593392 | 2_3:+50649290 | Msa0297030:CDS |
AGACTCTCATTTCTGAGAGG+AGG | 0.604951 | 2_3:+50649226 | Msa0297030:CDS |
GGAGAAGGAGAAAATGATGG+AGG | 0.607003 | 2_3:+50649123 | Msa0297030:CDS |
AGCTAGGAAGTTGAATGCTG+AGG | 0.609235 | 2_3:+50649521 | Msa0297030:CDS |
TCAAAATTTGAAGCTATGGG+TGG | 0.609799 | 2_3:+50650289 | Msa0297030:CDS |
ATATTGTGCAATAAAGGAGA+AGG | 0.612090 | 2_3:+50650024 | Msa0297030:CDS |
AGGGTTAGCATCATCGATTG+TGG | 0.612799 | 2_3:-50649181 | None:intergenic |
GGTGGACATGTTCCAAGTGG+AGG | 0.635415 | 2_3:+50649981 | Msa0297030:intron |
AATCGATGATGCTAACCCTA+GGG | 0.641884 | 2_3:+50649185 | Msa0297030:CDS |
CCAAGACTCTCATTTCTGAG+AGG | 0.669057 | 2_3:+50649223 | Msa0297030:CDS |
GTAGGTGGACATGTTCCAAG+TGG | 0.684360 | 2_3:+50649978 | Msa0297030:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAAAGATAAAATTTTTGTTA+GGG | + | chr2_3:50649340-50649359 | Msa0297030:intron | 15.0% |
!!! | ATATGCTTAATATTAATTTG+AGG | + | chr2_3:50649388-50649407 | Msa0297030:intron | 15.0% |
!!! | CAAAGATAAAATTTTTGTTA+GGG | + | chr2_3:50649340-50649359 | Msa0297030:intron | 15.0% |
!!! | ATATGCTTAATATTAATTTG+AGG | + | chr2_3:50649388-50649407 | Msa0297030:intron | 15.0% |
!! | TATTGTTGTGATCAAATAAT+AGG | - | chr2_3:50649014-50649033 | None:intergenic | 20.0% |
!!! | GCAAAGATAAAATTTTTGTT+AGG | + | chr2_3:50649339-50649358 | Msa0297030:intron | 20.0% |
!! | AATGAAAAATTAATCAAACC+TGG | - | chr2_3:50649647-50649666 | None:intergenic | 20.0% |
!! | AGCATTAATCAATGAATTAA+TGG | - | chr2_3:50650180-50650199 | None:intergenic | 20.0% |
!!! | TAATTCATTGATTAATGCTT+AGG | + | chr2_3:50650181-50650200 | Msa0297030:intron | 20.0% |
!!! | AATTCATTGATTAATGCTTA+GGG | + | chr2_3:50650182-50650201 | Msa0297030:intron | 20.0% |
!! | ATTGTTGTGTTGAAAAATAT+AGG | + | chr2_3:50650238-50650257 | Msa0297030:intron | 20.0% |
!! | TGTTGAAAAATATAGGTAAA+CGG | + | chr2_3:50650245-50650264 | Msa0297030:intron | 20.0% |
!! | TATTGTTGTGATCAAATAAT+AGG | - | chr2_3:50649014-50649033 | None:intergenic | 20.0% |
!!! | GCAAAGATAAAATTTTTGTT+AGG | + | chr2_3:50649339-50649358 | Msa0297030:intron | 20.0% |
!! | AATGAAAAATTAATCAAACC+TGG | - | chr2_3:50649647-50649666 | None:intergenic | 20.0% |
!! | AGCATTAATCAATGAATTAA+TGG | - | chr2_3:50650180-50650199 | None:intergenic | 20.0% |
!!! | TAATTCATTGATTAATGCTT+AGG | + | chr2_3:50650181-50650200 | Msa0297030:intron | 20.0% |
!!! | AATTCATTGATTAATGCTTA+GGG | + | chr2_3:50650182-50650201 | Msa0297030:intron | 20.0% |
!! | ATTGTTGTGTTGAAAAATAT+AGG | + | chr2_3:50650238-50650257 | Msa0297030:intron | 20.0% |
!! | TGTTGAAAAATATAGGTAAA+CGG | + | chr2_3:50650245-50650264 | Msa0297030:intron | 20.0% |
! | TCGATAAATTGATCAAAGTT+TGG | - | chr2_3:50648883-50648902 | None:intergenic | 25.0% |
!!! | CAATTTATCGATTTAATTCG+AGG | + | chr2_3:50648892-50648911 | Msa0297030:CDS | 25.0% |
! | TTGTGATCAAATAATAGGTT+TGG | - | chr2_3:50649009-50649028 | None:intergenic | 25.0% |
! | CTAATTACCTTTGTAATGTT+GGG | - | chr2_3:50649300-50649319 | None:intergenic | 25.0% |
! | ACTAATTACCTTTGTAATGT+TGG | - | chr2_3:50649301-50649320 | None:intergenic | 25.0% |
! | TCTTTGCAACTAATTGAAAA+AGG | - | chr2_3:50649326-50649345 | None:intergenic | 25.0% |
!! | TAATTTTCTTGCAAATTGGA+TGG | - | chr2_3:50649623-50649642 | None:intergenic | 25.0% |
!! | TGGATAATTTTCTTGCAAAT+TGG | - | chr2_3:50649627-50649646 | None:intergenic | 25.0% |
! | AATTTGCAAGAAAATTATCC+AGG | + | chr2_3:50649626-50649645 | Msa0297030:CDS | 25.0% |
! | AGACTCATGAAATTATAACT+TGG | - | chr2_3:50649697-50649716 | None:intergenic | 25.0% |
!! | AAAAATGTTGGTCTAAGATA+AGG | - | chr2_3:50649768-50649787 | None:intergenic | 25.0% |
! | TGCTGTTAAAGAAAAAATGT+TGG | - | chr2_3:50649780-50649799 | None:intergenic | 25.0% |
! | AAGATAGAAAACTACAAACA+AGG | + | chr2_3:50649846-50649865 | Msa0297030:intron | 25.0% |
! | AGATAGAAAACTACAAACAA+GGG | + | chr2_3:50649847-50649866 | Msa0297030:intron | 25.0% |
! | TTAGACAAACACTTTATAGT+TGG | + | chr2_3:50649903-50649922 | Msa0297030:intron | 25.0% |
! | GCAAAAATATTGTGCAATAA+AGG | + | chr2_3:50650018-50650037 | Msa0297030:CDS | 25.0% |
! | CAATGTTCAAAATTCAAACT+TGG | + | chr2_3:50650092-50650111 | Msa0297030:CDS | 25.0% |
! | ATCAATGAATTAATGGAAGA+GGG | - | chr2_3:50650173-50650192 | None:intergenic | 25.0% |
! | AATCAATGAATTAATGGAAG+AGG | - | chr2_3:50650174-50650193 | None:intergenic | 25.0% |
!!! | AAATTTTGAAGGTTCATTTC+TGG | - | chr2_3:50650278-50650297 | None:intergenic | 25.0% |
! | TCGATAAATTGATCAAAGTT+TGG | - | chr2_3:50648883-50648902 | None:intergenic | 25.0% |
!!! | CAATTTATCGATTTAATTCG+AGG | + | chr2_3:50648892-50648911 | Msa0297030:CDS | 25.0% |
! | TTGTGATCAAATAATAGGTT+TGG | - | chr2_3:50649009-50649028 | None:intergenic | 25.0% |
! | CTAATTACCTTTGTAATGTT+GGG | - | chr2_3:50649300-50649319 | None:intergenic | 25.0% |
! | ACTAATTACCTTTGTAATGT+TGG | - | chr2_3:50649301-50649320 | None:intergenic | 25.0% |
! | TCTTTGCAACTAATTGAAAA+AGG | - | chr2_3:50649326-50649345 | None:intergenic | 25.0% |
!! | TAATTTTCTTGCAAATTGGA+TGG | - | chr2_3:50649623-50649642 | None:intergenic | 25.0% |
!! | TGGATAATTTTCTTGCAAAT+TGG | - | chr2_3:50649627-50649646 | None:intergenic | 25.0% |
! | AATTTGCAAGAAAATTATCC+AGG | + | chr2_3:50649626-50649645 | Msa0297030:CDS | 25.0% |
! | AGACTCATGAAATTATAACT+TGG | - | chr2_3:50649697-50649716 | None:intergenic | 25.0% |
!! | AAAAATGTTGGTCTAAGATA+AGG | - | chr2_3:50649768-50649787 | None:intergenic | 25.0% |
! | TGCTGTTAAAGAAAAAATGT+TGG | - | chr2_3:50649780-50649799 | None:intergenic | 25.0% |
! | AAGATAGAAAACTACAAACA+AGG | + | chr2_3:50649846-50649865 | Msa0297030:intron | 25.0% |
! | AGATAGAAAACTACAAACAA+GGG | + | chr2_3:50649847-50649866 | Msa0297030:intron | 25.0% |
! | TTAGACAAACACTTTATAGT+TGG | + | chr2_3:50649903-50649922 | Msa0297030:intron | 25.0% |
! | GCAAAAATATTGTGCAATAA+AGG | + | chr2_3:50650018-50650037 | Msa0297030:CDS | 25.0% |
! | CAATGTTCAAAATTCAAACT+TGG | + | chr2_3:50650092-50650111 | Msa0297030:CDS | 25.0% |
! | ATCAATGAATTAATGGAAGA+GGG | - | chr2_3:50650173-50650192 | None:intergenic | 25.0% |
! | AATCAATGAATTAATGGAAG+AGG | - | chr2_3:50650174-50650193 | None:intergenic | 25.0% |
!!! | AAATTTTGAAGGTTCATTTC+TGG | - | chr2_3:50650278-50650297 | None:intergenic | 25.0% |
GAAGATGCAATATCTAACTT+TGG | + | chr2_3:50648922-50648941 | Msa0297030:CDS | 30.0% | |
CAATGAAGCAATCATTGATA+AGG | - | chr2_3:50648954-50648973 | None:intergenic | 30.0% | |
TGATCAAATAATAGGTTTGG+AGG | - | chr2_3:50649006-50649025 | None:intergenic | 30.0% | |
TTTATATATCCACGTACAGA+TGG | + | chr2_3:50649443-50649462 | Msa0297030:intron | 30.0% | |
TCAGTGTCTGAAAATTATCA+AGG | + | chr2_3:50649567-50649586 | Msa0297030:CDS | 30.0% | |
GATAGAAAACTACAAACAAG+GGG | + | chr2_3:50649848-50649867 | Msa0297030:intron | 30.0% | |
TGTTGTGCATTATGATATGT+AGG | + | chr2_3:50649960-50649979 | Msa0297030:intron | 30.0% | |
ATATTGTGCAATAAAGGAGA+AGG | + | chr2_3:50650024-50650043 | Msa0297030:CDS | 30.0% | |
GTTATTGATGTCTTTGCTTA+AGG | + | chr2_3:50650204-50650223 | Msa0297030:intron | 30.0% | |
! | ACCTTCAAAATTTGAAGCTA+TGG | + | chr2_3:50650285-50650304 | Msa0297030:CDS | 30.0% |
! | CCTTCAAAATTTGAAGCTAT+GGG | + | chr2_3:50650286-50650305 | Msa0297030:CDS | 30.0% |
GAAGATGCAATATCTAACTT+TGG | + | chr2_3:50648922-50648941 | Msa0297030:CDS | 30.0% | |
CAATGAAGCAATCATTGATA+AGG | - | chr2_3:50648954-50648973 | None:intergenic | 30.0% | |
TGATCAAATAATAGGTTTGG+AGG | - | chr2_3:50649006-50649025 | None:intergenic | 30.0% | |
TTTATATATCCACGTACAGA+TGG | + | chr2_3:50649443-50649462 | Msa0297030:intron | 30.0% | |
TCAGTGTCTGAAAATTATCA+AGG | + | chr2_3:50649567-50649586 | Msa0297030:CDS | 30.0% | |
GATAGAAAACTACAAACAAG+GGG | + | chr2_3:50649848-50649867 | Msa0297030:intron | 30.0% | |
TGTTGTGCATTATGATATGT+AGG | + | chr2_3:50649960-50649979 | Msa0297030:intron | 30.0% | |
ATATTGTGCAATAAAGGAGA+AGG | + | chr2_3:50650024-50650043 | Msa0297030:CDS | 30.0% | |
GTTATTGATGTCTTTGCTTA+AGG | + | chr2_3:50650204-50650223 | Msa0297030:intron | 30.0% | |
! | ACCTTCAAAATTTGAAGCTA+TGG | + | chr2_3:50650285-50650304 | Msa0297030:CDS | 30.0% |
! | CCTTCAAAATTTGAAGCTAT+GGG | + | chr2_3:50650286-50650305 | Msa0297030:CDS | 30.0% |
TTGGAGGAATTGAAAGAAGT+TGG | - | chr2_3:50648990-50649009 | None:intergenic | 35.0% | |
! | TGTTATGATGGAGAGGTTAA+AGG | + | chr2_3:50649102-50649121 | Msa0297030:CDS | 35.0% |
AAAGGAGAAGGAGAAAATGA+TGG | + | chr2_3:50649120-50649139 | Msa0297030:CDS | 35.0% | |
! | TTTGGTTCCCAACATTACAA+AGG | + | chr2_3:50649290-50649309 | Msa0297030:CDS | 35.0% |
ATGGATAAGGCCTCTATAAT+TGG | + | chr2_3:50649462-50649481 | Msa0297030:CDS | 35.0% | |
TACTGCATCTCCAATTATAG+AGG | - | chr2_3:50649475-50649494 | None:intergenic | 35.0% | |
TGTGCATTATGATATGTAGG+TGG | + | chr2_3:50649963-50649982 | Msa0297030:intron | 35.0% | |
! | CCCATAGCTTCAAATTTTGA+AGG | - | chr2_3:50650289-50650308 | None:intergenic | 35.0% |
! | TCAAAATTTGAAGCTATGGG+TGG | + | chr2_3:50650289-50650308 | Msa0297030:CDS | 35.0% |
TTGGAGGAATTGAAAGAAGT+TGG | - | chr2_3:50648990-50649009 | None:intergenic | 35.0% | |
! | TGTTATGATGGAGAGGTTAA+AGG | + | chr2_3:50649102-50649121 | Msa0297030:CDS | 35.0% |
AAAGGAGAAGGAGAAAATGA+TGG | + | chr2_3:50649120-50649139 | Msa0297030:CDS | 35.0% | |
! | TTTGGTTCCCAACATTACAA+AGG | + | chr2_3:50649290-50649309 | Msa0297030:CDS | 35.0% |
ATGGATAAGGCCTCTATAAT+TGG | + | chr2_3:50649462-50649481 | Msa0297030:CDS | 35.0% | |
TACTGCATCTCCAATTATAG+AGG | - | chr2_3:50649475-50649494 | None:intergenic | 35.0% | |
TGTGCATTATGATATGTAGG+TGG | + | chr2_3:50649963-50649982 | Msa0297030:intron | 35.0% | |
! | CCCATAGCTTCAAATTTTGA+AGG | - | chr2_3:50650289-50650308 | None:intergenic | 35.0% |
! | TCAAAATTTGAAGCTATGGG+TGG | + | chr2_3:50650289-50650308 | Msa0297030:CDS | 35.0% |
GTCATGCAGCTCAAAGTTAT+TGG | - | chr2_3:50648848-50648867 | None:intergenic | 40.0% | |
AATCCAAGCCCTACAACAAT+TGG | + | chr2_3:50649069-50649088 | Msa0297030:CDS | 40.0% | |
AGAAGGAGCCAATTGTTGTA+GGG | - | chr2_3:50649080-50649099 | None:intergenic | 40.0% | |
CTCTCCATCATAACAAGAGA+AGG | - | chr2_3:50649097-50649116 | None:intergenic | 40.0% | |
! | CTTCTCTTGTTATGATGGAG+AGG | + | chr2_3:50649095-50649114 | Msa0297030:CDS | 40.0% |
AATCGATGATGCTAACCCTA+GGG | + | chr2_3:50649185-50649204 | Msa0297030:CDS | 40.0% | |
!! | ACCTATCAGTTTTAGCCCTA+GGG | - | chr2_3:50649203-50649222 | None:intergenic | 40.0% |
GCTTTATGCATTGCGTTCTT+TGG | + | chr2_3:50649272-50649291 | Msa0297030:CDS | 40.0% | |
TATCCACGTACAGATGGATA+AGG | + | chr2_3:50649449-50649468 | Msa0297030:intron | 40.0% | |
AAGTTGAATGCTGAGGTTTC+TGG | + | chr2_3:50649528-50649547 | Msa0297030:CDS | 40.0% | |
!! | AAACAAGGGGCATCAGATAT+AGG | + | chr2_3:50649861-50649880 | Msa0297030:intron | 40.0% |
AATAACCTCTTTCCTCCACT+TGG | - | chr2_3:50649996-50650015 | None:intergenic | 40.0% | |
AGTAGCTGCTTCATTGTACA+AGG | + | chr2_3:50650047-50650066 | Msa0297030:CDS | 40.0% | |
ATGGCATGAATTCAAAGCCT+TGG | - | chr2_3:50650331-50650350 | None:intergenic | 40.0% | |
GTCATGCAGCTCAAAGTTAT+TGG | - | chr2_3:50648848-50648867 | None:intergenic | 40.0% | |
AATCCAAGCCCTACAACAAT+TGG | + | chr2_3:50649069-50649088 | Msa0297030:CDS | 40.0% | |
AGAAGGAGCCAATTGTTGTA+GGG | - | chr2_3:50649080-50649099 | None:intergenic | 40.0% | |
CTCTCCATCATAACAAGAGA+AGG | - | chr2_3:50649097-50649116 | None:intergenic | 40.0% | |
! | CTTCTCTTGTTATGATGGAG+AGG | + | chr2_3:50649095-50649114 | Msa0297030:CDS | 40.0% |
AATCGATGATGCTAACCCTA+GGG | + | chr2_3:50649185-50649204 | Msa0297030:CDS | 40.0% | |
!! | ACCTATCAGTTTTAGCCCTA+GGG | - | chr2_3:50649203-50649222 | None:intergenic | 40.0% |
GCTTTATGCATTGCGTTCTT+TGG | + | chr2_3:50649272-50649291 | Msa0297030:CDS | 40.0% | |
TATCCACGTACAGATGGATA+AGG | + | chr2_3:50649449-50649468 | Msa0297030:intron | 40.0% | |
AAGTTGAATGCTGAGGTTTC+TGG | + | chr2_3:50649528-50649547 | Msa0297030:CDS | 40.0% | |
!! | AAACAAGGGGCATCAGATAT+AGG | + | chr2_3:50649861-50649880 | Msa0297030:intron | 40.0% |
AATAACCTCTTTCCTCCACT+TGG | - | chr2_3:50649996-50650015 | None:intergenic | 40.0% | |
AGTAGCTGCTTCATTGTACA+AGG | + | chr2_3:50650047-50650066 | Msa0297030:CDS | 40.0% | |
ATGGCATGAATTCAAAGCCT+TGG | - | chr2_3:50650331-50650350 | None:intergenic | 40.0% | |
GAGAAGGAGCCAATTGTTGT+AGG | - | chr2_3:50649081-50649100 | None:intergenic | 45.0% | |
! | GGCTCCTTCTCTTGTTATGA+TGG | + | chr2_3:50649090-50649109 | Msa0297030:CDS | 45.0% |
GATGGAGAGGTTAAAGGAGA+AGG | + | chr2_3:50649108-50649127 | Msa0297030:CDS | 45.0% | |
GGAGAAGGAGAAAATGATGG+AGG | + | chr2_3:50649123-50649142 | Msa0297030:CDS | 45.0% | |
! | GAAGGAGAAAATGATGGAGG+TGG | + | chr2_3:50649126-50649145 | Msa0297030:CDS | 45.0% |
! | AGGGTTAGCATCATCGATTG+TGG | - | chr2_3:50649184-50649203 | None:intergenic | 45.0% |
CAATCGATGATGCTAACCCT+AGG | + | chr2_3:50649184-50649203 | Msa0297030:CDS | 45.0% | |
ACCCTAGGGCTAAAACTGAT+AGG | + | chr2_3:50649199-50649218 | Msa0297030:CDS | 45.0% | |
!! | GACCTATCAGTTTTAGCCCT+AGG | - | chr2_3:50649204-50649223 | None:intergenic | 45.0% |
CCTCTCAGAAATGAGAGTCT+TGG | - | chr2_3:50649226-50649245 | None:intergenic | 45.0% | |
CCAAGACTCTCATTTCTGAG+AGG | + | chr2_3:50649223-50649242 | Msa0297030:CDS | 45.0% | |
! | AGACTCTCATTTCTGAGAGG+AGG | + | chr2_3:50649226-50649245 | Msa0297030:CDS | 45.0% |
ATGACCTTCAAGCACAAGCT+AGG | + | chr2_3:50649505-50649524 | Msa0297030:CDS | 45.0% | |
! | ACTTCCTAGCTTGTGCTTGA+AGG | - | chr2_3:50649512-50649531 | None:intergenic | 45.0% |
AGCTAGGAAGTTGAATGCTG+AGG | + | chr2_3:50649521-50649540 | Msa0297030:CDS | 45.0% | |
TGTTCGTCTTGTGCATAGAC+TGG | - | chr2_3:50649817-50649836 | None:intergenic | 45.0% | |
ATGTTCCAAGTGGAGGAAAG+AGG | + | chr2_3:50649988-50650007 | Msa0297030:CDS | 45.0% | |
! | AATTTGAAGCTATGGGTGGC+TGG | + | chr2_3:50650293-50650312 | Msa0297030:CDS | 45.0% |
GAGAAGGAGCCAATTGTTGT+AGG | - | chr2_3:50649081-50649100 | None:intergenic | 45.0% | |
! | GGCTCCTTCTCTTGTTATGA+TGG | + | chr2_3:50649090-50649109 | Msa0297030:CDS | 45.0% |
GATGGAGAGGTTAAAGGAGA+AGG | + | chr2_3:50649108-50649127 | Msa0297030:CDS | 45.0% | |
GGAGAAGGAGAAAATGATGG+AGG | + | chr2_3:50649123-50649142 | Msa0297030:CDS | 45.0% | |
! | GAAGGAGAAAATGATGGAGG+TGG | + | chr2_3:50649126-50649145 | Msa0297030:CDS | 45.0% |
! | AGGGTTAGCATCATCGATTG+TGG | - | chr2_3:50649184-50649203 | None:intergenic | 45.0% |
CAATCGATGATGCTAACCCT+AGG | + | chr2_3:50649184-50649203 | Msa0297030:CDS | 45.0% | |
ACCCTAGGGCTAAAACTGAT+AGG | + | chr2_3:50649199-50649218 | Msa0297030:CDS | 45.0% | |
!! | GACCTATCAGTTTTAGCCCT+AGG | - | chr2_3:50649204-50649223 | None:intergenic | 45.0% |
CCTCTCAGAAATGAGAGTCT+TGG | - | chr2_3:50649226-50649245 | None:intergenic | 45.0% | |
CCAAGACTCTCATTTCTGAG+AGG | + | chr2_3:50649223-50649242 | Msa0297030:CDS | 45.0% | |
! | AGACTCTCATTTCTGAGAGG+AGG | + | chr2_3:50649226-50649245 | Msa0297030:CDS | 45.0% |
ATGACCTTCAAGCACAAGCT+AGG | + | chr2_3:50649505-50649524 | Msa0297030:CDS | 45.0% | |
! | ACTTCCTAGCTTGTGCTTGA+AGG | - | chr2_3:50649512-50649531 | None:intergenic | 45.0% |
AGCTAGGAAGTTGAATGCTG+AGG | + | chr2_3:50649521-50649540 | Msa0297030:CDS | 45.0% | |
TGTTCGTCTTGTGCATAGAC+TGG | - | chr2_3:50649817-50649836 | None:intergenic | 45.0% | |
ATGTTCCAAGTGGAGGAAAG+AGG | + | chr2_3:50649988-50650007 | Msa0297030:CDS | 45.0% | |
! | AATTTGAAGCTATGGGTGGC+TGG | + | chr2_3:50650293-50650312 | Msa0297030:CDS | 45.0% |
GAGCCAATTGTTGTAGGGCT+TGG | - | chr2_3:50649075-50649094 | None:intergenic | 50.0% | |
! | CTCTCATTTCTGAGAGGAGG+AGG | + | chr2_3:50649229-50649248 | Msa0297030:CDS | 50.0% |
! | ATTTCTGAGAGGAGGAGGAG+AGG | + | chr2_3:50649234-50649253 | Msa0297030:CDS | 50.0% |
! | AGGCCTTATCCATCTGTACG+TGG | - | chr2_3:50649455-50649474 | None:intergenic | 50.0% |
GTAGGTGGACATGTTCCAAG+TGG | + | chr2_3:50649978-50649997 | Msa0297030:intron | 50.0% | |
! | GCTGGTGCTCTTTTGAACCA+AGG | + | chr2_3:50650311-50650330 | Msa0297030:CDS | 50.0% |
GAGCCAATTGTTGTAGGGCT+TGG | - | chr2_3:50649075-50649094 | None:intergenic | 50.0% | |
! | CTCTCATTTCTGAGAGGAGG+AGG | + | chr2_3:50649229-50649248 | Msa0297030:CDS | 50.0% |
! | ATTTCTGAGAGGAGGAGGAG+AGG | + | chr2_3:50649234-50649253 | Msa0297030:CDS | 50.0% |
! | AGGCCTTATCCATCTGTACG+TGG | - | chr2_3:50649455-50649474 | None:intergenic | 50.0% |
GTAGGTGGACATGTTCCAAG+TGG | + | chr2_3:50649978-50649997 | Msa0297030:intron | 50.0% | |
! | GCTGGTGCTCTTTTGAACCA+AGG | + | chr2_3:50650311-50650330 | Msa0297030:CDS | 50.0% |
GGTGGACATGTTCCAAGTGG+AGG | + | chr2_3:50649981-50650000 | Msa0297030:intron | 55.0% | |
GGTGGACATGTTCCAAGTGG+AGG | + | chr2_3:50649981-50650000 | Msa0297030:intron | 55.0% | |
GAGGAGGAGAGGCAGGATGA+AGG | + | chr2_3:50649245-50649264 | Msa0297030:CDS | 60.0% | |
GAGGAGGAGAGGCAGGATGA+AGG | + | chr2_3:50649245-50649264 | Msa0297030:CDS | 60.0% | |
CTGAGAGGAGGAGGAGAGGC+AGG | + | chr2_3:50649238-50649257 | Msa0297030:CDS | 65.0% | |
CTGAGAGGAGGAGGAGAGGC+AGG | + | chr2_3:50649238-50649257 | Msa0297030:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 50648826 | 50650358 | 50648826 | ID=Msa0297030;Name=Msa0297030 |
chr2_3 | mRNA | 50648826 | 50650358 | 50648826 | ID=Msa0297030-mRNA-1;Parent=Msa0297030;Name=Msa0297030-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|314 |
chr2_3 | exon | 50648826 | 50649311 | 50648826 | ID=Msa0297030-mRNA-1:exon:15920;Parent=Msa0297030-mRNA-1 |
chr2_3 | exon | 50649462 | 50649647 | 50649462 | ID=Msa0297030-mRNA-1:exon:15921;Parent=Msa0297030-mRNA-1 |
chr2_3 | exon | 50649982 | 50650155 | 50649982 | ID=Msa0297030-mRNA-1:exon:15922;Parent=Msa0297030-mRNA-1 |
chr2_3 | exon | 50650260 | 50650358 | 50650260 | ID=Msa0297030-mRNA-1:exon:15923;Parent=Msa0297030-mRNA-1 |
chr2_3 | CDS | 50648826 | 50649311 | 50648826 | ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1 |
chr2_3 | CDS | 50649462 | 50649647 | 50649462 | ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1 |
chr2_3 | CDS | 50649982 | 50650155 | 50649982 | ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1 |
chr2_3 | CDS | 50650260 | 50650358 | 50650260 | ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1 |
Gene Sequence |
Protein sequence |