AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297030 MtrunA17_Chr2g0320291 97.436 312 6 2 3 314 4 313 0.0 618
Msa0297030 MtrunA17_Chr4g0028071 64.526 327 93 10 2 314 16 333 3.77e-131 376
Msa0297030 MtrunA17_Chr8g0365711 34.591 159 83 3 126 270 236 387 2.27e-20 90.9
Msa0297030 MtrunA17_Chr1g0211081 29.362 235 128 7 63 259 239 473 1.67e-19 89.0
Msa0297030 MtrunA17_Chr3g0131691 30.645 186 108 4 89 259 257 436 2.25e-17 82.4
Msa0297030 MtrunA17_Chr2g0298751 26.203 187 117 3 133 301 51 234 1.70e-16 77.4
Msa0297030 MtrunA17_Chr8g0366751 30.864 162 93 5 138 283 466 624 7.31e-15 75.1
Msa0297030 MtrunA17_Chr4g0048851 31.548 168 108 4 122 288 37 198 1.19e-14 71.6
Msa0297030 MtrunA17_Chr4g0054571 29.825 171 97 3 98 258 127 284 2.83e-14 72.4
Msa0297030 MtrunA17_Chr5g0411341 30.488 164 91 5 138 283 497 655 4.08e-14 72.8
Msa0297030 MtrunA17_Chr7g0275821 30.464 151 97 4 138 287 256 399 6.85e-14 71.6
Msa0297030 MtrunA17_Chr7g0252041 28.859 149 90 2 133 266 285 432 9.48e-14 71.6
Msa0297030 MtrunA17_Chr4g0049331 26.404 178 124 5 97 270 99 273 6.69e-12 65.1
Msa0297030 MtrunA17_Chr8g0346151 33.708 89 54 1 138 221 283 371 8.99e-12 65.5
Msa0297030 MtrunA17_Chr8g0346161 28.421 190 98 9 113 276 259 436 1.97e-11 64.3
Msa0297030 MtrunA17_Chr1g0153241 32.143 112 64 3 79 186 44 147 2.02e-11 63.5
Msa0297030 MtrunA17_Chr7g0260841 48.077 52 27 0 138 189 359 410 2.59e-11 64.3
Msa0297030 MtrunA17_Chr5g0400671 30.435 138 85 4 136 268 156 287 9.04e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297030 AT2G28160.1 52.252 333 120 10 1 314 5 317 7.49e-104 306
Msa0297030 AT2G28160.2 51.682 327 119 10 1 308 5 311 9.67e-100 296
Msa0297030 AT4G29930.6 34.682 173 108 3 133 305 53 220 3.02e-24 99.0
Msa0297030 AT4G29930.2 34.682 173 105 4 133 305 53 217 4.02e-23 95.9
Msa0297030 AT5G57150.1 33.333 192 107 6 122 297 40 226 9.32e-23 95.1
Msa0297030 AT4G29930.5 35.099 151 92 3 133 283 53 197 2.97e-22 93.6
Msa0297030 AT5G57150.2 34.078 179 99 5 122 284 41 216 3.19e-22 93.2
Msa0297030 AT5G57150.5 35.758 165 87 5 122 270 40 201 3.95e-22 92.8
Msa0297030 AT5G57150.3 35.758 165 87 5 122 270 41 202 5.30e-22 92.4
Msa0297030 AT5G57150.4 35.758 165 87 5 122 270 41 202 1.59e-21 92.4
Msa0297030 AT2G16910.1 36.025 161 77 4 132 267 312 471 3.51e-21 94.4
Msa0297030 AT4G29930.1 31.156 199 106 5 133 305 53 246 4.80e-20 87.8
Msa0297030 AT4G29930.3 31.073 177 93 4 133 283 53 226 5.55e-19 85.1
Msa0297030 AT4G29930.7 31.073 177 93 4 133 283 53 226 5.55e-19 85.1
Msa0297030 AT2G46510.1 30.726 179 99 6 119 288 372 534 1.14e-17 84.0
Msa0297030 AT1G01260.1 33.155 187 103 4 95 281 396 560 1.47e-16 80.5
Msa0297030 AT1G01260.2 33.155 187 103 4 95 281 396 560 1.47e-16 80.5
Msa0297030 AT1G01260.3 33.155 187 103 4 95 281 396 560 1.47e-16 80.5
Msa0297030 AT4G29930.4 47.143 70 37 0 133 202 53 122 1.56e-15 73.9
Msa0297030 AT4G17880.1 28.188 149 103 3 138 283 420 567 2.22e-14 73.9
Msa0297030 AT1G12860.2 29.932 147 85 4 133 266 266 407 1.71e-13 70.9
Msa0297030 AT1G12860.1 29.932 147 85 4 133 266 266 407 2.07e-13 70.9
Msa0297030 AT3G26744.1 30.612 147 88 3 133 266 306 451 2.97e-13 70.5
Msa0297030 AT3G26744.4 30.612 147 88 3 133 266 306 451 2.97e-13 70.5
Msa0297030 AT3G26744.2 30.612 147 88 3 133 266 306 451 2.97e-13 70.5
Msa0297030 AT3G26744.6 31.293 147 87 4 133 266 306 451 3.02e-13 70.5
Msa0297030 AT1G32640.1 30.000 150 100 4 138 283 456 604 2.79e-12 67.8
Msa0297030 AT5G46760.1 29.091 165 85 6 138 283 419 570 7.98e-12 66.2
Msa0297030 AT2G22750.1 26.582 158 105 3 127 275 119 274 2.62e-11 63.9
Msa0297030 AT2G22750.4 26.582 158 105 3 127 275 147 302 2.69e-11 63.9
Msa0297030 AT2G22750.5 26.582 158 105 3 127 275 143 298 2.80e-11 63.9
Msa0297030 AT2G22750.3 26.582 158 105 3 127 275 147 302 3.11e-11 63.9
Msa0297030 AT2G22750.2 26.582 158 105 3 127 275 119 274 3.15e-11 63.5
Msa0297030 AT1G10610.3 45.161 62 34 0 132 193 165 226 6.85e-11 62.8
Msa0297030 AT4G37850.2 25.909 220 123 9 61 258 80 281 7.51e-11 62.8
Msa0297030 AT4G37850.1 25.909 220 123 9 61 258 80 281 7.51e-11 62.8
Msa0297030 AT1G10610.2 45.161 62 34 0 132 193 232 293 8.71e-11 62.8

Find 59 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTGAATGCTGAGGTTTC+TGG 0.189821 2_3:+50649528 Msa0297030:CDS
TGTTATGATGGAGAGGTTAA+AGG 0.231584 2_3:+50649102 Msa0297030:CDS
TATTGTTGTGATCAAATAAT+AGG 0.246719 2_3:-50649011 None:intergenic
GCTTTATGCATTGCGTTCTT+TGG 0.304101 2_3:+50649272 Msa0297030:CDS
ATGGATAAGGCCTCTATAAT+TGG 0.313859 2_3:+50649462 Msa0297030:CDS
TCGATAAATTGATCAAAGTT+TGG 0.327610 2_3:-50648880 None:intergenic
GTCATGCAGCTCAAAGTTAT+TGG 0.328211 2_3:-50648845 None:intergenic
CTAATTACCTTTGTAATGTT+GGG 0.360034 2_3:-50649297 None:intergenic
ACTAATTACCTTTGTAATGT+TGG 0.365158 2_3:-50649298 None:intergenic
ACTTCCTAGCTTGTGCTTGA+AGG 0.382012 2_3:-50649509 None:intergenic
ACCTTCAAAATTTGAAGCTA+TGG 0.386796 2_3:+50650285 Msa0297030:CDS
GGCTCCTTCTCTTGTTATGA+TGG 0.389333 2_3:+50649090 Msa0297030:CDS
GAGCCAATTGTTGTAGGGCT+TGG 0.390918 2_3:-50649072 None:intergenic
CAATGTTCAAAATTCAAACT+TGG 0.395586 2_3:+50650092 Msa0297030:CDS
TTGTGATCAAATAATAGGTT+TGG 0.409993 2_3:-50649006 None:intergenic
TTGGAGGAATTGAAAGAAGT+TGG 0.410526 2_3:-50648987 None:intergenic
CAATTTATCGATTTAATTCG+AGG 0.430612 2_3:+50648892 Msa0297030:CDS
AATCCAAGCCCTACAACAAT+TGG 0.433423 2_3:+50649069 Msa0297030:CDS
GAGGAGGAGAGGCAGGATGA+AGG 0.445153 2_3:+50649245 Msa0297030:CDS
CTGAGAGGAGGAGGAGAGGC+AGG 0.453081 2_3:+50649238 Msa0297030:CDS
GAGAAGGAGCCAATTGTTGT+AGG 0.453789 2_3:-50649078 None:intergenic
GAAGATGCAATATCTAACTT+TGG 0.471684 2_3:+50648922 Msa0297030:CDS
CCTTCAAAATTTGAAGCTAT+GGG 0.474141 2_3:+50650286 Msa0297030:CDS
CCTCTCAGAAATGAGAGTCT+TGG 0.475407 2_3:-50649223 None:intergenic
CTCTCATTTCTGAGAGGAGG+AGG 0.478718 2_3:+50649229 Msa0297030:CDS
AATTTGCAAGAAAATTATCC+AGG 0.484959 2_3:+50649626 Msa0297030:CDS
TCAGTGTCTGAAAATTATCA+AGG 0.485823 2_3:+50649567 Msa0297030:CDS
GATGGAGAGGTTAAAGGAGA+AGG 0.491246 2_3:+50649108 Msa0297030:CDS
CAATGAAGCAATCATTGATA+AGG 0.492027 2_3:-50648951 None:intergenic
TGATCAAATAATAGGTTTGG+AGG 0.499808 2_3:-50649003 None:intergenic
CTTCTCTTGTTATGATGGAG+AGG 0.500496 2_3:+50649095 Msa0297030:CDS
ATGGCATGAATTCAAAGCCT+TGG 0.500719 2_3:-50650328 None:intergenic
CATGCAGTGGCTCAAAATGA+TGG 0.501968 2_3:-50650347 None:intergenic
TACTGCATCTCCAATTATAG+AGG 0.518020 2_3:-50649472 None:intergenic
AATAACCTCTTTCCTCCACT+TGG 0.518798 2_3:-50649993 None:intergenic
TATCCACGTACAGATGGATA+AGG 0.530307 2_3:+50649449 Msa0297030:intron
AGAAGGAGCCAATTGTTGTA+GGG 0.535853 2_3:-50649077 None:intergenic
AAAGGAGAAGGAGAAAATGA+TGG 0.542463 2_3:+50649120 Msa0297030:CDS
GAAGGAGAAAATGATGGAGG+TGG 0.543991 2_3:+50649126 Msa0297030:CDS
CTCTCCATCATAACAAGAGA+AGG 0.545524 2_3:-50649094 None:intergenic
CAATCGATGATGCTAACCCT+AGG 0.549718 2_3:+50649184 Msa0297030:CDS
ACCCTAGGGCTAAAACTGAT+AGG 0.553134 2_3:+50649199 Msa0297030:CDS
AATTTGAAGCTATGGGTGGC+TGG 0.562736 2_3:+50650293 Msa0297030:CDS
GGTGTTCTCTAGTGAGTCCA+TGG 0.563816 2_3:-50648824 None:intergenic
ATGACCTTCAAGCACAAGCT+AGG 0.564350 2_3:+50649505 Msa0297030:CDS
ATTTCTGAGAGGAGGAGGAG+AGG 0.573269 2_3:+50649234 Msa0297030:CDS
AGTAGCTGCTTCATTGTACA+AGG 0.575970 2_3:+50650047 Msa0297030:CDS
ATGTTCCAAGTGGAGGAAAG+AGG 0.591850 2_3:+50649988 Msa0297030:CDS
TTTGGTTCCCAACATTACAA+AGG 0.593392 2_3:+50649290 Msa0297030:CDS
AGACTCTCATTTCTGAGAGG+AGG 0.604951 2_3:+50649226 Msa0297030:CDS
GGAGAAGGAGAAAATGATGG+AGG 0.607003 2_3:+50649123 Msa0297030:CDS
AGCTAGGAAGTTGAATGCTG+AGG 0.609235 2_3:+50649521 Msa0297030:CDS
TCAAAATTTGAAGCTATGGG+TGG 0.609799 2_3:+50650289 Msa0297030:CDS
ATATTGTGCAATAAAGGAGA+AGG 0.612090 2_3:+50650024 Msa0297030:CDS
AGGGTTAGCATCATCGATTG+TGG 0.612799 2_3:-50649181 None:intergenic
GGTGGACATGTTCCAAGTGG+AGG 0.635415 2_3:+50649981 Msa0297030:intron
AATCGATGATGCTAACCCTA+GGG 0.641884 2_3:+50649185 Msa0297030:CDS
CCAAGACTCTCATTTCTGAG+AGG 0.669057 2_3:+50649223 Msa0297030:CDS
GTAGGTGGACATGTTCCAAG+TGG 0.684360 2_3:+50649978 Msa0297030:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAGATAAAATTTTTGTTA+GGG + chr2_3:50649340-50649359 Msa0297030:intron 15.0%
!!! ATATGCTTAATATTAATTTG+AGG + chr2_3:50649388-50649407 Msa0297030:intron 15.0%
!!! CAAAGATAAAATTTTTGTTA+GGG + chr2_3:50649340-50649359 Msa0297030:intron 15.0%
!!! ATATGCTTAATATTAATTTG+AGG + chr2_3:50649388-50649407 Msa0297030:intron 15.0%
!! TATTGTTGTGATCAAATAAT+AGG - chr2_3:50649014-50649033 None:intergenic 20.0%
!!! GCAAAGATAAAATTTTTGTT+AGG + chr2_3:50649339-50649358 Msa0297030:intron 20.0%
!! AATGAAAAATTAATCAAACC+TGG - chr2_3:50649647-50649666 None:intergenic 20.0%
!! AGCATTAATCAATGAATTAA+TGG - chr2_3:50650180-50650199 None:intergenic 20.0%
!!! TAATTCATTGATTAATGCTT+AGG + chr2_3:50650181-50650200 Msa0297030:intron 20.0%
!!! AATTCATTGATTAATGCTTA+GGG + chr2_3:50650182-50650201 Msa0297030:intron 20.0%
!! ATTGTTGTGTTGAAAAATAT+AGG + chr2_3:50650238-50650257 Msa0297030:intron 20.0%
!! TGTTGAAAAATATAGGTAAA+CGG + chr2_3:50650245-50650264 Msa0297030:intron 20.0%
!! TATTGTTGTGATCAAATAAT+AGG - chr2_3:50649014-50649033 None:intergenic 20.0%
!!! GCAAAGATAAAATTTTTGTT+AGG + chr2_3:50649339-50649358 Msa0297030:intron 20.0%
!! AATGAAAAATTAATCAAACC+TGG - chr2_3:50649647-50649666 None:intergenic 20.0%
!! AGCATTAATCAATGAATTAA+TGG - chr2_3:50650180-50650199 None:intergenic 20.0%
!!! TAATTCATTGATTAATGCTT+AGG + chr2_3:50650181-50650200 Msa0297030:intron 20.0%
!!! AATTCATTGATTAATGCTTA+GGG + chr2_3:50650182-50650201 Msa0297030:intron 20.0%
!! ATTGTTGTGTTGAAAAATAT+AGG + chr2_3:50650238-50650257 Msa0297030:intron 20.0%
!! TGTTGAAAAATATAGGTAAA+CGG + chr2_3:50650245-50650264 Msa0297030:intron 20.0%
! TCGATAAATTGATCAAAGTT+TGG - chr2_3:50648883-50648902 None:intergenic 25.0%
!!! CAATTTATCGATTTAATTCG+AGG + chr2_3:50648892-50648911 Msa0297030:CDS 25.0%
! TTGTGATCAAATAATAGGTT+TGG - chr2_3:50649009-50649028 None:intergenic 25.0%
! CTAATTACCTTTGTAATGTT+GGG - chr2_3:50649300-50649319 None:intergenic 25.0%
! ACTAATTACCTTTGTAATGT+TGG - chr2_3:50649301-50649320 None:intergenic 25.0%
! TCTTTGCAACTAATTGAAAA+AGG - chr2_3:50649326-50649345 None:intergenic 25.0%
!! TAATTTTCTTGCAAATTGGA+TGG - chr2_3:50649623-50649642 None:intergenic 25.0%
!! TGGATAATTTTCTTGCAAAT+TGG - chr2_3:50649627-50649646 None:intergenic 25.0%
! AATTTGCAAGAAAATTATCC+AGG + chr2_3:50649626-50649645 Msa0297030:CDS 25.0%
! AGACTCATGAAATTATAACT+TGG - chr2_3:50649697-50649716 None:intergenic 25.0%
!! AAAAATGTTGGTCTAAGATA+AGG - chr2_3:50649768-50649787 None:intergenic 25.0%
! TGCTGTTAAAGAAAAAATGT+TGG - chr2_3:50649780-50649799 None:intergenic 25.0%
! AAGATAGAAAACTACAAACA+AGG + chr2_3:50649846-50649865 Msa0297030:intron 25.0%
! AGATAGAAAACTACAAACAA+GGG + chr2_3:50649847-50649866 Msa0297030:intron 25.0%
! TTAGACAAACACTTTATAGT+TGG + chr2_3:50649903-50649922 Msa0297030:intron 25.0%
! GCAAAAATATTGTGCAATAA+AGG + chr2_3:50650018-50650037 Msa0297030:CDS 25.0%
! CAATGTTCAAAATTCAAACT+TGG + chr2_3:50650092-50650111 Msa0297030:CDS 25.0%
! ATCAATGAATTAATGGAAGA+GGG - chr2_3:50650173-50650192 None:intergenic 25.0%
! AATCAATGAATTAATGGAAG+AGG - chr2_3:50650174-50650193 None:intergenic 25.0%
!!! AAATTTTGAAGGTTCATTTC+TGG - chr2_3:50650278-50650297 None:intergenic 25.0%
! TCGATAAATTGATCAAAGTT+TGG - chr2_3:50648883-50648902 None:intergenic 25.0%
!!! CAATTTATCGATTTAATTCG+AGG + chr2_3:50648892-50648911 Msa0297030:CDS 25.0%
! TTGTGATCAAATAATAGGTT+TGG - chr2_3:50649009-50649028 None:intergenic 25.0%
! CTAATTACCTTTGTAATGTT+GGG - chr2_3:50649300-50649319 None:intergenic 25.0%
! ACTAATTACCTTTGTAATGT+TGG - chr2_3:50649301-50649320 None:intergenic 25.0%
! TCTTTGCAACTAATTGAAAA+AGG - chr2_3:50649326-50649345 None:intergenic 25.0%
!! TAATTTTCTTGCAAATTGGA+TGG - chr2_3:50649623-50649642 None:intergenic 25.0%
!! TGGATAATTTTCTTGCAAAT+TGG - chr2_3:50649627-50649646 None:intergenic 25.0%
! AATTTGCAAGAAAATTATCC+AGG + chr2_3:50649626-50649645 Msa0297030:CDS 25.0%
! AGACTCATGAAATTATAACT+TGG - chr2_3:50649697-50649716 None:intergenic 25.0%
!! AAAAATGTTGGTCTAAGATA+AGG - chr2_3:50649768-50649787 None:intergenic 25.0%
! TGCTGTTAAAGAAAAAATGT+TGG - chr2_3:50649780-50649799 None:intergenic 25.0%
! AAGATAGAAAACTACAAACA+AGG + chr2_3:50649846-50649865 Msa0297030:intron 25.0%
! AGATAGAAAACTACAAACAA+GGG + chr2_3:50649847-50649866 Msa0297030:intron 25.0%
! TTAGACAAACACTTTATAGT+TGG + chr2_3:50649903-50649922 Msa0297030:intron 25.0%
! GCAAAAATATTGTGCAATAA+AGG + chr2_3:50650018-50650037 Msa0297030:CDS 25.0%
! CAATGTTCAAAATTCAAACT+TGG + chr2_3:50650092-50650111 Msa0297030:CDS 25.0%
! ATCAATGAATTAATGGAAGA+GGG - chr2_3:50650173-50650192 None:intergenic 25.0%
! AATCAATGAATTAATGGAAG+AGG - chr2_3:50650174-50650193 None:intergenic 25.0%
!!! AAATTTTGAAGGTTCATTTC+TGG - chr2_3:50650278-50650297 None:intergenic 25.0%
GAAGATGCAATATCTAACTT+TGG + chr2_3:50648922-50648941 Msa0297030:CDS 30.0%
CAATGAAGCAATCATTGATA+AGG - chr2_3:50648954-50648973 None:intergenic 30.0%
TGATCAAATAATAGGTTTGG+AGG - chr2_3:50649006-50649025 None:intergenic 30.0%
TTTATATATCCACGTACAGA+TGG + chr2_3:50649443-50649462 Msa0297030:intron 30.0%
TCAGTGTCTGAAAATTATCA+AGG + chr2_3:50649567-50649586 Msa0297030:CDS 30.0%
GATAGAAAACTACAAACAAG+GGG + chr2_3:50649848-50649867 Msa0297030:intron 30.0%
TGTTGTGCATTATGATATGT+AGG + chr2_3:50649960-50649979 Msa0297030:intron 30.0%
ATATTGTGCAATAAAGGAGA+AGG + chr2_3:50650024-50650043 Msa0297030:CDS 30.0%
GTTATTGATGTCTTTGCTTA+AGG + chr2_3:50650204-50650223 Msa0297030:intron 30.0%
! ACCTTCAAAATTTGAAGCTA+TGG + chr2_3:50650285-50650304 Msa0297030:CDS 30.0%
! CCTTCAAAATTTGAAGCTAT+GGG + chr2_3:50650286-50650305 Msa0297030:CDS 30.0%
GAAGATGCAATATCTAACTT+TGG + chr2_3:50648922-50648941 Msa0297030:CDS 30.0%
CAATGAAGCAATCATTGATA+AGG - chr2_3:50648954-50648973 None:intergenic 30.0%
TGATCAAATAATAGGTTTGG+AGG - chr2_3:50649006-50649025 None:intergenic 30.0%
TTTATATATCCACGTACAGA+TGG + chr2_3:50649443-50649462 Msa0297030:intron 30.0%
TCAGTGTCTGAAAATTATCA+AGG + chr2_3:50649567-50649586 Msa0297030:CDS 30.0%
GATAGAAAACTACAAACAAG+GGG + chr2_3:50649848-50649867 Msa0297030:intron 30.0%
TGTTGTGCATTATGATATGT+AGG + chr2_3:50649960-50649979 Msa0297030:intron 30.0%
ATATTGTGCAATAAAGGAGA+AGG + chr2_3:50650024-50650043 Msa0297030:CDS 30.0%
GTTATTGATGTCTTTGCTTA+AGG + chr2_3:50650204-50650223 Msa0297030:intron 30.0%
! ACCTTCAAAATTTGAAGCTA+TGG + chr2_3:50650285-50650304 Msa0297030:CDS 30.0%
! CCTTCAAAATTTGAAGCTAT+GGG + chr2_3:50650286-50650305 Msa0297030:CDS 30.0%
TTGGAGGAATTGAAAGAAGT+TGG - chr2_3:50648990-50649009 None:intergenic 35.0%
! TGTTATGATGGAGAGGTTAA+AGG + chr2_3:50649102-50649121 Msa0297030:CDS 35.0%
AAAGGAGAAGGAGAAAATGA+TGG + chr2_3:50649120-50649139 Msa0297030:CDS 35.0%
! TTTGGTTCCCAACATTACAA+AGG + chr2_3:50649290-50649309 Msa0297030:CDS 35.0%
ATGGATAAGGCCTCTATAAT+TGG + chr2_3:50649462-50649481 Msa0297030:CDS 35.0%
TACTGCATCTCCAATTATAG+AGG - chr2_3:50649475-50649494 None:intergenic 35.0%
TGTGCATTATGATATGTAGG+TGG + chr2_3:50649963-50649982 Msa0297030:intron 35.0%
! CCCATAGCTTCAAATTTTGA+AGG - chr2_3:50650289-50650308 None:intergenic 35.0%
! TCAAAATTTGAAGCTATGGG+TGG + chr2_3:50650289-50650308 Msa0297030:CDS 35.0%
TTGGAGGAATTGAAAGAAGT+TGG - chr2_3:50648990-50649009 None:intergenic 35.0%
! TGTTATGATGGAGAGGTTAA+AGG + chr2_3:50649102-50649121 Msa0297030:CDS 35.0%
AAAGGAGAAGGAGAAAATGA+TGG + chr2_3:50649120-50649139 Msa0297030:CDS 35.0%
! TTTGGTTCCCAACATTACAA+AGG + chr2_3:50649290-50649309 Msa0297030:CDS 35.0%
ATGGATAAGGCCTCTATAAT+TGG + chr2_3:50649462-50649481 Msa0297030:CDS 35.0%
TACTGCATCTCCAATTATAG+AGG - chr2_3:50649475-50649494 None:intergenic 35.0%
TGTGCATTATGATATGTAGG+TGG + chr2_3:50649963-50649982 Msa0297030:intron 35.0%
! CCCATAGCTTCAAATTTTGA+AGG - chr2_3:50650289-50650308 None:intergenic 35.0%
! TCAAAATTTGAAGCTATGGG+TGG + chr2_3:50650289-50650308 Msa0297030:CDS 35.0%
GTCATGCAGCTCAAAGTTAT+TGG - chr2_3:50648848-50648867 None:intergenic 40.0%
AATCCAAGCCCTACAACAAT+TGG + chr2_3:50649069-50649088 Msa0297030:CDS 40.0%
AGAAGGAGCCAATTGTTGTA+GGG - chr2_3:50649080-50649099 None:intergenic 40.0%
CTCTCCATCATAACAAGAGA+AGG - chr2_3:50649097-50649116 None:intergenic 40.0%
! CTTCTCTTGTTATGATGGAG+AGG + chr2_3:50649095-50649114 Msa0297030:CDS 40.0%
AATCGATGATGCTAACCCTA+GGG + chr2_3:50649185-50649204 Msa0297030:CDS 40.0%
!! ACCTATCAGTTTTAGCCCTA+GGG - chr2_3:50649203-50649222 None:intergenic 40.0%
GCTTTATGCATTGCGTTCTT+TGG + chr2_3:50649272-50649291 Msa0297030:CDS 40.0%
TATCCACGTACAGATGGATA+AGG + chr2_3:50649449-50649468 Msa0297030:intron 40.0%
AAGTTGAATGCTGAGGTTTC+TGG + chr2_3:50649528-50649547 Msa0297030:CDS 40.0%
!! AAACAAGGGGCATCAGATAT+AGG + chr2_3:50649861-50649880 Msa0297030:intron 40.0%
AATAACCTCTTTCCTCCACT+TGG - chr2_3:50649996-50650015 None:intergenic 40.0%
AGTAGCTGCTTCATTGTACA+AGG + chr2_3:50650047-50650066 Msa0297030:CDS 40.0%
ATGGCATGAATTCAAAGCCT+TGG - chr2_3:50650331-50650350 None:intergenic 40.0%
GTCATGCAGCTCAAAGTTAT+TGG - chr2_3:50648848-50648867 None:intergenic 40.0%
AATCCAAGCCCTACAACAAT+TGG + chr2_3:50649069-50649088 Msa0297030:CDS 40.0%
AGAAGGAGCCAATTGTTGTA+GGG - chr2_3:50649080-50649099 None:intergenic 40.0%
CTCTCCATCATAACAAGAGA+AGG - chr2_3:50649097-50649116 None:intergenic 40.0%
! CTTCTCTTGTTATGATGGAG+AGG + chr2_3:50649095-50649114 Msa0297030:CDS 40.0%
AATCGATGATGCTAACCCTA+GGG + chr2_3:50649185-50649204 Msa0297030:CDS 40.0%
!! ACCTATCAGTTTTAGCCCTA+GGG - chr2_3:50649203-50649222 None:intergenic 40.0%
GCTTTATGCATTGCGTTCTT+TGG + chr2_3:50649272-50649291 Msa0297030:CDS 40.0%
TATCCACGTACAGATGGATA+AGG + chr2_3:50649449-50649468 Msa0297030:intron 40.0%
AAGTTGAATGCTGAGGTTTC+TGG + chr2_3:50649528-50649547 Msa0297030:CDS 40.0%
!! AAACAAGGGGCATCAGATAT+AGG + chr2_3:50649861-50649880 Msa0297030:intron 40.0%
AATAACCTCTTTCCTCCACT+TGG - chr2_3:50649996-50650015 None:intergenic 40.0%
AGTAGCTGCTTCATTGTACA+AGG + chr2_3:50650047-50650066 Msa0297030:CDS 40.0%
ATGGCATGAATTCAAAGCCT+TGG - chr2_3:50650331-50650350 None:intergenic 40.0%
GAGAAGGAGCCAATTGTTGT+AGG - chr2_3:50649081-50649100 None:intergenic 45.0%
! GGCTCCTTCTCTTGTTATGA+TGG + chr2_3:50649090-50649109 Msa0297030:CDS 45.0%
GATGGAGAGGTTAAAGGAGA+AGG + chr2_3:50649108-50649127 Msa0297030:CDS 45.0%
GGAGAAGGAGAAAATGATGG+AGG + chr2_3:50649123-50649142 Msa0297030:CDS 45.0%
! GAAGGAGAAAATGATGGAGG+TGG + chr2_3:50649126-50649145 Msa0297030:CDS 45.0%
! AGGGTTAGCATCATCGATTG+TGG - chr2_3:50649184-50649203 None:intergenic 45.0%
CAATCGATGATGCTAACCCT+AGG + chr2_3:50649184-50649203 Msa0297030:CDS 45.0%
ACCCTAGGGCTAAAACTGAT+AGG + chr2_3:50649199-50649218 Msa0297030:CDS 45.0%
!! GACCTATCAGTTTTAGCCCT+AGG - chr2_3:50649204-50649223 None:intergenic 45.0%
CCTCTCAGAAATGAGAGTCT+TGG - chr2_3:50649226-50649245 None:intergenic 45.0%
CCAAGACTCTCATTTCTGAG+AGG + chr2_3:50649223-50649242 Msa0297030:CDS 45.0%
! AGACTCTCATTTCTGAGAGG+AGG + chr2_3:50649226-50649245 Msa0297030:CDS 45.0%
ATGACCTTCAAGCACAAGCT+AGG + chr2_3:50649505-50649524 Msa0297030:CDS 45.0%
! ACTTCCTAGCTTGTGCTTGA+AGG - chr2_3:50649512-50649531 None:intergenic 45.0%
AGCTAGGAAGTTGAATGCTG+AGG + chr2_3:50649521-50649540 Msa0297030:CDS 45.0%
TGTTCGTCTTGTGCATAGAC+TGG - chr2_3:50649817-50649836 None:intergenic 45.0%
ATGTTCCAAGTGGAGGAAAG+AGG + chr2_3:50649988-50650007 Msa0297030:CDS 45.0%
! AATTTGAAGCTATGGGTGGC+TGG + chr2_3:50650293-50650312 Msa0297030:CDS 45.0%
GAGAAGGAGCCAATTGTTGT+AGG - chr2_3:50649081-50649100 None:intergenic 45.0%
! GGCTCCTTCTCTTGTTATGA+TGG + chr2_3:50649090-50649109 Msa0297030:CDS 45.0%
GATGGAGAGGTTAAAGGAGA+AGG + chr2_3:50649108-50649127 Msa0297030:CDS 45.0%
GGAGAAGGAGAAAATGATGG+AGG + chr2_3:50649123-50649142 Msa0297030:CDS 45.0%
! GAAGGAGAAAATGATGGAGG+TGG + chr2_3:50649126-50649145 Msa0297030:CDS 45.0%
! AGGGTTAGCATCATCGATTG+TGG - chr2_3:50649184-50649203 None:intergenic 45.0%
CAATCGATGATGCTAACCCT+AGG + chr2_3:50649184-50649203 Msa0297030:CDS 45.0%
ACCCTAGGGCTAAAACTGAT+AGG + chr2_3:50649199-50649218 Msa0297030:CDS 45.0%
!! GACCTATCAGTTTTAGCCCT+AGG - chr2_3:50649204-50649223 None:intergenic 45.0%
CCTCTCAGAAATGAGAGTCT+TGG - chr2_3:50649226-50649245 None:intergenic 45.0%
CCAAGACTCTCATTTCTGAG+AGG + chr2_3:50649223-50649242 Msa0297030:CDS 45.0%
! AGACTCTCATTTCTGAGAGG+AGG + chr2_3:50649226-50649245 Msa0297030:CDS 45.0%
ATGACCTTCAAGCACAAGCT+AGG + chr2_3:50649505-50649524 Msa0297030:CDS 45.0%
! ACTTCCTAGCTTGTGCTTGA+AGG - chr2_3:50649512-50649531 None:intergenic 45.0%
AGCTAGGAAGTTGAATGCTG+AGG + chr2_3:50649521-50649540 Msa0297030:CDS 45.0%
TGTTCGTCTTGTGCATAGAC+TGG - chr2_3:50649817-50649836 None:intergenic 45.0%
ATGTTCCAAGTGGAGGAAAG+AGG + chr2_3:50649988-50650007 Msa0297030:CDS 45.0%
! AATTTGAAGCTATGGGTGGC+TGG + chr2_3:50650293-50650312 Msa0297030:CDS 45.0%
GAGCCAATTGTTGTAGGGCT+TGG - chr2_3:50649075-50649094 None:intergenic 50.0%
! CTCTCATTTCTGAGAGGAGG+AGG + chr2_3:50649229-50649248 Msa0297030:CDS 50.0%
! ATTTCTGAGAGGAGGAGGAG+AGG + chr2_3:50649234-50649253 Msa0297030:CDS 50.0%
! AGGCCTTATCCATCTGTACG+TGG - chr2_3:50649455-50649474 None:intergenic 50.0%
GTAGGTGGACATGTTCCAAG+TGG + chr2_3:50649978-50649997 Msa0297030:intron 50.0%
! GCTGGTGCTCTTTTGAACCA+AGG + chr2_3:50650311-50650330 Msa0297030:CDS 50.0%
GAGCCAATTGTTGTAGGGCT+TGG - chr2_3:50649075-50649094 None:intergenic 50.0%
! CTCTCATTTCTGAGAGGAGG+AGG + chr2_3:50649229-50649248 Msa0297030:CDS 50.0%
! ATTTCTGAGAGGAGGAGGAG+AGG + chr2_3:50649234-50649253 Msa0297030:CDS 50.0%
! AGGCCTTATCCATCTGTACG+TGG - chr2_3:50649455-50649474 None:intergenic 50.0%
GTAGGTGGACATGTTCCAAG+TGG + chr2_3:50649978-50649997 Msa0297030:intron 50.0%
! GCTGGTGCTCTTTTGAACCA+AGG + chr2_3:50650311-50650330 Msa0297030:CDS 50.0%
GGTGGACATGTTCCAAGTGG+AGG + chr2_3:50649981-50650000 Msa0297030:intron 55.0%
GGTGGACATGTTCCAAGTGG+AGG + chr2_3:50649981-50650000 Msa0297030:intron 55.0%
GAGGAGGAGAGGCAGGATGA+AGG + chr2_3:50649245-50649264 Msa0297030:CDS 60.0%
GAGGAGGAGAGGCAGGATGA+AGG + chr2_3:50649245-50649264 Msa0297030:CDS 60.0%
CTGAGAGGAGGAGGAGAGGC+AGG + chr2_3:50649238-50649257 Msa0297030:CDS 65.0%
CTGAGAGGAGGAGGAGAGGC+AGG + chr2_3:50649238-50649257 Msa0297030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50648826 50650358 50648826 ID=Msa0297030;Name=Msa0297030
chr2_3 mRNA 50648826 50650358 50648826 ID=Msa0297030-mRNA-1;Parent=Msa0297030;Name=Msa0297030-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|314
chr2_3 exon 50648826 50649311 50648826 ID=Msa0297030-mRNA-1:exon:15920;Parent=Msa0297030-mRNA-1
chr2_3 exon 50649462 50649647 50649462 ID=Msa0297030-mRNA-1:exon:15921;Parent=Msa0297030-mRNA-1
chr2_3 exon 50649982 50650155 50649982 ID=Msa0297030-mRNA-1:exon:15922;Parent=Msa0297030-mRNA-1
chr2_3 exon 50650260 50650358 50650260 ID=Msa0297030-mRNA-1:exon:15923;Parent=Msa0297030-mRNA-1
chr2_3 CDS 50648826 50649311 50648826 ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1
chr2_3 CDS 50649462 50649647 50649462 ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1
chr2_3 CDS 50649982 50650155 50649982 ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1
chr2_3 CDS 50650260 50650358 50650260 ID=Msa0297030-mRNA-1:cds;Parent=Msa0297030-mRNA-1
Gene Sequence

>Msa0297030

ATGGACTCACTAGAGAACACCAATAACTTTGAGCTGCATGACTTCATTGACGATCCAAACTTTGATCAATTTATCGATTTAATTCGAGGTGAGCATGAAGATGCAATATCTAACTTTGGCTCTGACCTTATCAATGATTGCTTCATTGATAATAATATTAACCAACTTCTTTCAATTCCTCCAAACCTATTATTTGATCACAACAATAACAATATTATTAATAATAATGTTGTCAATGAGTATAATCCAAGCCCTACAACAATTGGCTCCTTCTCTTGTTATGATGGAGAGGTTAAAGGAGAAGGAGAAAATGATGGAGGTGGTTCTTCTGCAACAACGACGACGACGACGACAACCACAATCGATGATGCTAACCCTAGGGCTAAAACTGATAGGTCCAAGACTCTCATTTCTGAGAGGAGGAGGAGAGGCAGGATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAATGCTGAGGTTTCTGGACTTGAAGCATCTTTATCAGTGTCTGAAAATTATCAAGGATCAATTAGTAACACTATTAATGTTCAAAGCCATCCAATTTGCAAGAAAATTATCCAGGTGGACATGTTCCAAGTGGAGGAAAGAGGTTATTATGCAAAAATATTGTGCAATAAAGGAGAAGGAGTAGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCAAATTTCAATGTTCAAAATTCAAACTTGGCTACAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTAAACGGTTCTGAACCAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCATTTTGA

Protein sequence

>Msa0297030

MDSLENTNNFELHDFIDDPNFDQFIDLIRGEHEDAISNFGSDLINDCFIDNNINQLLSIPPNLLFDHNNNNIINNNVVNEYNPSPTTIGSFSCYDGEVKGEGENDGGGSSATTTTTTTTTIDDANPRAKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLNAEVSGLEASLSVSENYQGSISNTINVQSHPICKKIIQVDMFQVEERGYYAKILCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLNVNGSEPEMNLQNLKLWVAGALLNQGFEFMPSF*