AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643230 MtrunA17_Chr4g0029341 92.661 218 16 0 1 218 1 218 1.22e-151 419
Msa0643230 MtrunA17_Chr1g0196661 69.302 215 66 0 4 218 3 217 1.31e-112 321
Msa0643230 MtrunA17_Chr1g0196721 68.224 214 68 0 5 218 3 216 1.78e-107 308
Msa0643230 MtrunA17_Chr1g0196711 66.512 215 72 0 4 218 3 217 4.40e-103 297
Msa0643230 MtrunA17_Chr1g0196691 64.352 216 76 1 4 218 28 243 7.17e-103 297
Msa0643230 MtrunA17_Chr1g0212301 49.767 215 104 3 1 213 1 213 5.29e-67 205
Msa0643230 MtrunA17_Chr1g0196771 48.341 211 108 1 3 213 2 211 1.40e-66 204
Msa0643230 MtrunA17_Chr4g0008791 46.698 212 109 2 4 214 7 215 2.57e-63 196
Msa0643230 MtrunA17_Chr4g0008781 46.544 217 112 3 3 218 7 220 1.17e-61 192
Msa0643230 MtrunA17_Chr7g0240641 47.418 213 108 2 3 214 6 215 1.22e-60 189
Msa0643230 MtrunA17_Chr7g0240691 45.327 214 112 2 3 214 36 246 2.32e-59 187
Msa0643230 MtrunA17_Chr7g0240511 46.296 216 107 3 3 217 6 213 4.61e-59 185
Msa0643230 MtrunA17_Chr7g0240631 45.540 213 112 2 3 214 6 215 4.81e-59 185
Msa0643230 MtrunA17_Chr7g0240681 45.327 214 112 2 3 214 6 216 6.13e-58 182
Msa0643230 MtrunA17_Chr5g0417011 44.091 220 117 4 2 216 5 223 2.18e-57 181
Msa0643230 MtrunA17_Chr3g0132581 45.070 213 113 3 3 214 4 213 3.74e-57 180
Msa0643230 MtrunA17_Chr7g0240561 42.991 214 116 3 3 214 6 215 1.99e-56 178
Msa0643230 MtrunA17_Chr8g0379581 44.651 215 113 2 2 214 3 213 7.01e-55 174
Msa0643230 MtrunA17_Chr2g0312721 43.192 213 116 3 1 212 1 209 8.44e-54 172
Msa0643230 MtrunA17_Chr2g0312771 45.000 220 114 4 1 218 1 215 1.45e-53 171
Msa0643230 MtrunA17_Chr8g0379561 46.396 222 110 5 1 218 2 218 2.80e-53 171
Msa0643230 MtrunA17_Chr7g0240581 40.845 213 122 2 3 214 6 215 9.68e-53 169
Msa0643230 MtrunA17_Chr7g0240541 42.991 214 116 4 3 214 6 215 1.11e-52 169
Msa0643230 MtrunA17_Chr2g0312751 45.327 214 110 4 1 212 1 209 1.27e-52 169
Msa0643230 MtrunA17_Chr7g0240611 41.315 213 117 3 3 214 6 211 3.74e-51 165
Msa0643230 MtrunA17_Chr7g0240551 41.315 213 121 2 3 214 6 215 4.60e-51 165
Msa0643230 MtrunA17_Chr8g0363751 43.578 218 115 6 5 215 6 222 8.56e-51 164
Msa0643230 MtrunA17_Chr7g0240671 42.326 215 114 4 1 213 1 207 1.09e-50 164
Msa0643230 MtrunA17_Chr6g0483141 43.434 198 106 3 18 213 17 210 2.32e-50 163
Msa0643230 MtrunA17_Chr7g0240531 41.784 213 120 2 3 214 6 215 4.53e-50 162
Msa0643230 MtrunA17_Chr2g0312791 43.243 222 117 6 1 218 1 217 6.90e-50 162
Msa0643230 MtrunA17_Chr7g0240661 42.991 214 114 3 1 213 4 210 1.05e-49 161
Msa0643230 MtrunA17_Chr2g0312731 41.148 209 118 3 1 208 1 205 1.11e-48 159
Msa0643230 MtrunA17_Chr2g0312781 42.857 210 113 4 1 208 18 222 2.71e-48 158
Msa0643230 MtrunA17_Chr7g0240521 44.186 215 113 5 3 214 13 223 3.94e-48 157
Msa0643230 MtrunA17_Chr2g0312811 41.204 216 118 5 1 212 1 211 1.91e-47 155
Msa0643230 MtrunA17_Chr7g0240651 40.845 213 118 3 3 214 6 211 1.76e-45 150
Msa0643230 MtrunA17_Chr8g0357241 40.376 213 122 3 1 212 1 209 3.43e-45 149
Msa0643230 MtrunA17_Chr5g0415411 39.111 225 128 4 3 218 4 228 2.21e-44 148
Msa0643230 MtrunA17_Chr3g0107731 40.952 210 119 3 10 218 15 220 2.59e-44 147
Msa0643230 MtrunA17_Chr8g0357211 39.906 213 123 3 1 212 1 209 4.30e-44 147
Msa0643230 MtrunA17_Chr3g0107741 40.092 217 125 3 3 218 8 220 2.85e-43 145
Msa0643230 MtrunA17_Chr4g0069471 45.506 178 93 3 1 176 22 197 3.73e-42 141
Msa0643230 MtrunA17_Chr2g0312681 37.963 216 129 3 1 215 1 212 4.24e-42 142
Msa0643230 MtrunA17_Chr2g0312691 39.906 213 123 3 1 212 1 209 1.03e-41 140
Msa0643230 MtrunA17_Chr2g0312711 40.000 215 119 5 1 212 1 208 5.17e-40 136
Msa0643230 MtrunA17_Chr5g0433801 36.792 212 129 3 2 212 4 211 2.56e-38 132
Msa0643230 MtrunA17_Chr8g0391631 44.654 159 79 7 1 152 19 175 4.20e-36 125
Msa0643230 MtrunA17_Chr2g0313561 60.714 56 21 1 48 102 2 57 2.57e-19 79.0
Msa0643230 MtrunA17_Chr5g0415421 43.590 78 41 1 24 98 7 84 8.46e-12 60.5
Msa0643230 MtrunA17_Chr4g0076691 27.907 215 135 7 4 206 15 221 1.98e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643230 AT3G09270.1 46.512 215 111 3 3 215 5 217 1.58e-59 187
Msa0643230 AT2G29460.1 43.318 217 120 2 3 218 6 220 1.14e-55 177
Msa0643230 AT2G29450.1 42.661 218 121 3 3 218 5 220 1.63e-55 176
Msa0643230 AT2G29490.1 43.981 216 118 2 3 217 6 219 2.66e-55 176
Msa0643230 AT1G10370.1 43.694 222 120 3 2 218 3 224 4.74e-55 175
Msa0643230 AT2G29420.1 40.553 217 127 1 2 218 7 221 7.08e-55 175
Msa0643230 AT2G29470.1 42.661 218 121 3 3 218 6 221 1.81e-54 174
Msa0643230 AT2G29480.1 43.779 217 119 2 3 218 6 220 1.22e-53 172
Msa0643230 AT1G17180.1 41.553 219 123 3 1 218 1 215 1.29e-49 161
Msa0643230 AT1G78340.1 42.453 212 117 3 1 211 1 208 6.84e-49 159
Msa0643230 AT1G10360.1 41.176 221 125 3 3 218 4 224 6.66e-48 157
Msa0643230 AT2G29440.1 39.171 217 129 2 3 218 5 219 7.13e-48 157
Msa0643230 AT1G27130.1 40.553 217 123 4 3 213 5 221 9.02e-48 157
Msa0643230 AT1G74590.1 38.813 219 131 2 3 218 6 224 2.17e-47 156
Msa0643230 AT1G78320.1 41.038 212 116 6 1 209 1 206 1.40e-46 154
Msa0643230 AT1G78370.1 40.094 212 122 3 1 211 1 208 2.86e-46 152
Msa0643230 AT5G62480.1 36.842 228 129 5 1 217 5 228 5.55e-46 152
Msa0643230 AT1G69930.1 38.140 215 129 3 3 213 11 225 1.04e-45 152
Msa0643230 AT1G59670.1 39.631 217 125 4 3 213 5 221 2.33e-45 151
Msa0643230 AT1G27140.1 39.910 223 127 4 3 218 5 227 1.32e-44 149
Msa0643230 AT1G78380.1 40.183 219 126 3 1 218 1 215 2.70e-44 147
Msa0643230 AT1G17170.1 40.376 213 121 4 1 212 1 208 1.14e-43 146
Msa0643230 AT1G59700.1 37.788 217 129 4 3 213 5 221 1.85e-42 143
Msa0643230 AT1G17190.1 35.484 217 135 3 3 218 4 216 5.92e-41 139
Msa0643230 AT1G69920.1 36.744 215 130 4 5 213 35 249 3.38e-39 135
Msa0643230 AT1G78360.1 37.850 214 127 4 1 212 1 210 3.79e-39 134
Msa0643230 AT1G53680.1 38.614 202 117 4 10 208 13 210 1.59e-38 133
Msa0643230 AT3G43800.1 38.182 220 127 5 3 217 4 219 1.20e-37 131
Msa0643230 AT5G62480.3 30.667 225 116 5 3 217 7 201 6.53e-30 110
Msa0643230 AT5G62480.2 30.667 225 117 5 3 217 7 202 9.32e-30 110
Msa0643230 AT1G78320.2 33.175 211 107 6 1 209 1 179 4.89e-28 105
Msa0643230 AT2G02390.1 27.315 216 136 6 3 206 7 213 1.32e-11 62.0

Find 47 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCCCAAGCTCGGTTC+TGG 0.280479 4_3:+45785059 Msa0643230:CDS
AAGTGAAGCTACATGGATTT+TGG 0.302285 4_3:+45784801 Msa0643230:CDS
AATACTACCCTCAAAGTAAA+AGG 0.302524 4_3:-45784830 None:intergenic
ATATAAGCTACCCCTTTCTT+AGG 0.310777 4_3:-45785765 None:intergenic
CCGAGCTTGGGCTCTCTCAT+AGG 0.329353 4_3:-45785053 None:intergenic
AGAATACCATAGCGAAAATC+TGG 0.331408 4_3:+45785457 Msa0643230:CDS
TATGTTACCAACCTAGGGTT+TGG 0.360197 4_3:+45785839 Msa0643230:three_prime_UTR
GTATTGACCCTTAAGCTAAA+AGG 0.363440 4_3:+45784848 Msa0643230:CDS
TTGAATATATTGATGAGATA+TGG 0.397859 4_3:+45785002 Msa0643230:CDS
TCTTCTTCTATGTTCTCATA+TGG 0.416671 4_3:-45784875 None:intergenic
AACATTGTGGACATAGCTCT+TGG 0.424866 4_3:+45785549 Msa0643230:CDS
TATAGCATCTTCCTAAGAAA+GGG 0.430711 4_3:+45785754 Msa0643230:three_prime_UTR
AAAACTCCGGTGTTGGTTCA+TGG 0.434187 4_3:+45784947 Msa0643230:CDS
CTTCTTTATGTTACCAACCT+AGG 0.434614 4_3:+45785833 Msa0643230:three_prime_UTR
GCTATCAGTTTCTCATGATC+AGG 0.440168 4_3:-45785702 None:intergenic
GCTCTCTCATAGGGATCAAC+AGG 0.444906 4_3:-45785043 None:intergenic
AATTCCCTCACTTGCATGCA+TGG 0.474769 4_3:+45785637 Msa0643230:CDS
TTCAAGAATGTACCTGTCAT+AGG 0.475029 4_3:+45785669 Msa0643230:CDS
GAGAGCCCAAGCTCGGTTCT+GGG 0.483641 4_3:+45785060 Msa0643230:CDS
TTATAGCATCTTCCTAAGAA+AGG 0.485520 4_3:+45785753 Msa0643230:three_prime_UTR
AAAGTAATAAAATTCTAAGA+TGG 0.486615 4_3:+45785881 Msa0643230:three_prime_UTR
TTCTTTATGTTACCAACCTA+GGG 0.487900 4_3:+45785834 Msa0643230:three_prime_UTR
CGAGCTTGGGCTCTCTCATA+GGG 0.521012 4_3:-45785052 None:intergenic
GATTGTATTGAAGAAGTTGA+GGG 0.534705 4_3:-45784913 None:intergenic
TCAAACCATGCATGCAAGTG+AGG 0.535813 4_3:-45785642 None:intergenic
GCAGATCAAGTGAAGCTACA+TGG 0.559561 4_3:+45784794 Msa0643230:CDS
GAGGGAATTTCTCAGCTGCT+AGG 0.567585 4_3:-45785623 None:intergenic
CAAACCATGCATGCAAGTGA+GGG 0.568010 4_3:-45785641 None:intergenic
GGATTGTATTGAAGAAGTTG+AGG 0.571991 4_3:-45784914 None:intergenic
TAGGGATCAACAGGAAGCAA+AGG 0.573576 4_3:-45785034 None:intergenic
GCACAAGAAAACTCCGGTGT+TGG 0.576241 4_3:+45784940 Msa0643230:CDS
AGGGATCAACAGGAAGCAAA+GGG 0.577972 4_3:-45785033 None:intergenic
CTAACGAGTGCACCAACTGC+AGG 0.579048 4_3:-45785411 None:intergenic
GAATACCATAGCGAAAATCT+GGG 0.582158 4_3:+45785458 Msa0643230:CDS
AGACAAACCAAACCCTAGGT+TGG 0.608754 4_3:-45785846 None:intergenic
GGTGCACTCGTTAGTAGCGG+TGG 0.611355 4_3:+45785420 Msa0643230:CDS
AGGAGACACTATTAACATTG+TGG 0.617662 4_3:+45785536 Msa0643230:CDS
CCTATGAGAGAGCCCAAGCT+CGG 0.617875 4_3:+45785053 Msa0643230:CDS
AGCTAGACAAACCAAACCCT+AGG 0.620297 4_3:-45785850 None:intergenic
TTTCCACCATGAACCAACAC+CGG 0.639081 4_3:-45784953 None:intergenic
ATGATCATAGACTCACATAG+AGG 0.640551 4_3:-45784977 None:intergenic
GTAGCGGTGGCGATGAAGAG+CGG 0.649339 4_3:+45785433 Msa0643230:CDS
TCCAGTGCACAAGAAAACTC+CGG 0.653047 4_3:+45784934 Msa0643230:CDS
ATAGCATCTTCCTAAGAAAG+GGG 0.653667 4_3:+45785755 Msa0643230:three_prime_UTR
ACTCCGGTGTTGGTTCATGG+TGG 0.663999 4_3:+45784950 Msa0643230:CDS
GTTGGTGCACTCGTTAGTAG+CGG 0.664719 4_3:+45785417 Msa0643230:CDS
ACAGGAAGCAAAGGGTACTG+TGG 0.666663 4_3:-45785025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAACATATTATTT+AGG + chr4_3:45785213-45785232 Msa0643230:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_3:45785347-45785366 None:intergenic 10.0%
!! ATTTAATCAACATATTATTT+AGG + chr4_3:45785213-45785232 Msa0643230:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_3:45785347-45785366 None:intergenic 10.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_3:45785150-45785169 None:intergenic 15.0%
!! AATAATAATATTGTTGGATA+TGG - chr4_3:45785290-45785309 None:intergenic 15.0%
!!! AAAGTAATAAAATTCTAAGA+TGG + chr4_3:45785881-45785900 Msa0643230:three_prime_UTR 15.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_3:45785150-45785169 None:intergenic 15.0%
!! AATAATAATATTGTTGGATA+TGG - chr4_3:45785290-45785309 None:intergenic 15.0%
!! TTGAATATATTGATGAGATA+TGG + chr4_3:45785002-45785021 Msa0643230:CDS 20.0%
!! TTGAATATATTGATGAGATA+TGG + chr4_3:45785002-45785021 Msa0643230:CDS 20.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_3:45785252-45785271 None:intergenic 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_3:45785252-45785271 None:intergenic 25.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_3:45784833-45784852 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_3:45784858-45784877 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_3:45784859-45784878 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_3:45784878-45784897 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_3:45784916-45784935 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_3:45785136-45785155 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_3:45785399-45785418 Msa0643230:intron 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_3:45785713-45785732 Msa0643230:CDS 30.0%
TTATAGCATCTTCCTAAGAA+AGG + chr4_3:45785753-45785772 Msa0643230:three_prime_UTR 30.0%
TATAGCATCTTCCTAAGAAA+GGG + chr4_3:45785754-45785773 Msa0643230:three_prime_UTR 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_3:45785834-45785853 Msa0643230:three_prime_UTR 30.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_3:45784833-45784852 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_3:45784858-45784877 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_3:45784859-45784878 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_3:45784878-45784897 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_3:45784916-45784935 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_3:45785136-45785155 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_3:45785399-45785418 Msa0643230:intron 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_3:45785713-45785732 Msa0643230:CDS 30.0%
TTATAGCATCTTCCTAAGAA+AGG + chr4_3:45785753-45785772 Msa0643230:three_prime_UTR 30.0%
TATAGCATCTTCCTAAGAAA+GGG + chr4_3:45785754-45785773 Msa0643230:three_prime_UTR 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_3:45785834-45785853 Msa0643230:three_prime_UTR 30.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_3:45784801-45784820 Msa0643230:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_3:45784823-45784842 Msa0643230:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_3:45784848-45784867 Msa0643230:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_3:45784917-45784936 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_3:45784980-45784999 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_3:45785275-45785294 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_3:45785457-45785476 Msa0643230:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_3:45785458-45785477 Msa0643230:CDS 35.0%
! GACCACAAGAAGAAACTTTT+TGG + chr4_3:45785513-45785532 Msa0643230:CDS 35.0%
CTCCAAAAAGTTTCTTCTTG+TGG - chr4_3:45785518-45785537 None:intergenic 35.0%
! CACAAGAAGAAACTTTTTGG+AGG + chr4_3:45785516-45785535 Msa0643230:CDS 35.0%
AGGAGACACTATTAACATTG+TGG + chr4_3:45785536-45785555 Msa0643230:CDS 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_3:45785669-45785688 Msa0643230:CDS 35.0%
ATAGCATCTTCCTAAGAAAG+GGG + chr4_3:45785755-45785774 Msa0643230:three_prime_UTR 35.0%
ATATAAGCTACCCCTTTCTT+AGG - chr4_3:45785768-45785787 None:intergenic 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_3:45785833-45785852 Msa0643230:three_prime_UTR 35.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_3:45784801-45784820 Msa0643230:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_3:45784823-45784842 Msa0643230:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_3:45784848-45784867 Msa0643230:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_3:45784917-45784936 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_3:45784980-45784999 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_3:45785275-45785294 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_3:45785457-45785476 Msa0643230:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_3:45785458-45785477 Msa0643230:CDS 35.0%
! GACCACAAGAAGAAACTTTT+TGG + chr4_3:45785513-45785532 Msa0643230:CDS 35.0%
CTCCAAAAAGTTTCTTCTTG+TGG - chr4_3:45785518-45785537 None:intergenic 35.0%
! CACAAGAAGAAACTTTTTGG+AGG + chr4_3:45785516-45785535 Msa0643230:CDS 35.0%
AGGAGACACTATTAACATTG+TGG + chr4_3:45785536-45785555 Msa0643230:CDS 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_3:45785669-45785688 Msa0643230:CDS 35.0%
ATAGCATCTTCCTAAGAAAG+GGG + chr4_3:45785755-45785774 Msa0643230:three_prime_UTR 35.0%
ATATAAGCTACCCCTTTCTT+AGG - chr4_3:45785768-45785787 None:intergenic 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_3:45785833-45785852 Msa0643230:three_prime_UTR 35.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_3:45784822-45784841 Msa0643230:CDS 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_3:45785466-45785485 None:intergenic 40.0%
AACATTGTGGACATAGCTCT+TGG + chr4_3:45785549-45785568 Msa0643230:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_3:45785684-45785703 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_3:45785705-45785724 None:intergenic 40.0%
TATGTTACCAACCTAGGGTT+TGG + chr4_3:45785839-45785858 Msa0643230:three_prime_UTR 40.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_3:45784822-45784841 Msa0643230:CDS 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_3:45785466-45785485 None:intergenic 40.0%
AACATTGTGGACATAGCTCT+TGG + chr4_3:45785549-45785568 Msa0643230:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_3:45785684-45785703 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_3:45785705-45785724 None:intergenic 40.0%
TATGTTACCAACCTAGGGTT+TGG + chr4_3:45785839-45785858 Msa0643230:three_prime_UTR 40.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_3:45784794-45784813 Msa0643230:CDS 45.0%
TCCAGTGCACAAGAAAACTC+CGG + chr4_3:45784934-45784953 Msa0643230:CDS 45.0%
!! AAAACTCCGGTGTTGGTTCA+TGG + chr4_3:45784947-45784966 Msa0643230:CDS 45.0%
TTTCCACCATGAACCAACAC+CGG - chr4_3:45784956-45784975 None:intergenic 45.0%
AGGGATCAACAGGAAGCAAA+GGG - chr4_3:45785036-45785055 None:intergenic 45.0%
TAGGGATCAACAGGAAGCAA+AGG - chr4_3:45785037-45785056 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_3:45785068-45785087 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_3:45785069-45785088 None:intergenic 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_3:45785637-45785656 Msa0643230:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_3:45785644-45785663 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_3:45785645-45785664 None:intergenic 45.0%
AGACAAACCAAACCCTAGGT+TGG - chr4_3:45785849-45785868 None:intergenic 45.0%
AGCTAGACAAACCAAACCCT+AGG - chr4_3:45785853-45785872 None:intergenic 45.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_3:45784794-45784813 Msa0643230:CDS 45.0%
TCCAGTGCACAAGAAAACTC+CGG + chr4_3:45784934-45784953 Msa0643230:CDS 45.0%
!! AAAACTCCGGTGTTGGTTCA+TGG + chr4_3:45784947-45784966 Msa0643230:CDS 45.0%
TTTCCACCATGAACCAACAC+CGG - chr4_3:45784956-45784975 None:intergenic 45.0%
AGGGATCAACAGGAAGCAAA+GGG - chr4_3:45785036-45785055 None:intergenic 45.0%
TAGGGATCAACAGGAAGCAA+AGG - chr4_3:45785037-45785056 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_3:45785068-45785087 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_3:45785069-45785088 None:intergenic 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_3:45785637-45785656 Msa0643230:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_3:45785644-45785663 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_3:45785645-45785664 None:intergenic 45.0%
AGACAAACCAAACCCTAGGT+TGG - chr4_3:45785849-45785868 None:intergenic 45.0%
AGCTAGACAAACCAAACCCT+AGG - chr4_3:45785853-45785872 None:intergenic 45.0%
!! AAAAAAAATAATAATATTGT+TGG - chr4_3:45785296-45785315 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_3:45785371-45785390 Msa0643230:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_3:45785372-45785391 Msa0643230:intron 5.0%
!! AAAAAAAATAATAATATTGT+TGG - chr4_3:45785296-45785315 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_3:45785371-45785390 Msa0643230:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_3:45785372-45785391 Msa0643230:intron 5.0%
! ACCGGAGTTTTCTTGTGCAC+TGG - chr4_3:45784938-45784957 None:intergenic 50.0%
GCACAAGAAAACTCCGGTGT+TGG + chr4_3:45784940-45784959 Msa0643230:CDS 50.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_3:45785028-45785047 None:intergenic 50.0%
GCTCTCTCATAGGGATCAAC+AGG - chr4_3:45785046-45785065 None:intergenic 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_3:45785417-45785436 Msa0643230:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_3:45785626-45785645 None:intergenic 50.0%
! ACCGGAGTTTTCTTGTGCAC+TGG - chr4_3:45784938-45784957 None:intergenic 50.0%
GCACAAGAAAACTCCGGTGT+TGG + chr4_3:45784940-45784959 Msa0643230:CDS 50.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_3:45785028-45785047 None:intergenic 50.0%
GCTCTCTCATAGGGATCAAC+AGG - chr4_3:45785046-45785065 None:intergenic 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_3:45785417-45785436 Msa0643230:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_3:45785626-45785645 None:intergenic 50.0%
!! ACTCCGGTGTTGGTTCATGG+TGG + chr4_3:45784950-45784969 Msa0643230:CDS 55.0%
CGAGCTTGGGCTCTCTCATA+GGG - chr4_3:45785055-45785074 None:intergenic 55.0%
CCTATGAGAGAGCCCAAGCT+CGG + chr4_3:45785053-45785072 Msa0643230:CDS 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_3:45785414-45785433 None:intergenic 55.0%
!! ACTCCGGTGTTGGTTCATGG+TGG + chr4_3:45784950-45784969 Msa0643230:CDS 55.0%
CGAGCTTGGGCTCTCTCATA+GGG - chr4_3:45785055-45785074 None:intergenic 55.0%
CCTATGAGAGAGCCCAAGCT+CGG + chr4_3:45785053-45785072 Msa0643230:CDS 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_3:45785414-45785433 None:intergenic 55.0%
CCGAGCTTGGGCTCTCTCAT+AGG - chr4_3:45785056-45785075 None:intergenic 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_3:45785059-45785078 Msa0643230:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_3:45785060-45785079 Msa0643230:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_3:45785420-45785439 Msa0643230:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_3:45785433-45785452 Msa0643230:CDS 60.0%
CCGAGCTTGGGCTCTCTCAT+AGG - chr4_3:45785056-45785075 None:intergenic 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_3:45785059-45785078 Msa0643230:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_3:45785060-45785079 Msa0643230:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_3:45785420-45785439 Msa0643230:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_3:45785433-45785452 Msa0643230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45784791 45785903 45784791 ID=Msa0643230;Name=Msa0643230
chr4_3 mRNA 45784791 45785903 45784791 ID=Msa0643230-mRNA-1;Parent=Msa0643230;Name=Msa0643230-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.5|1|1|1|2|151|218
chr4_3 exon 45784791 45785102 45784791 ID=Msa0643230-mRNA-1:exon:10631;Parent=Msa0643230-mRNA-1
chr4_3 exon 45785408 45785903 45785408 ID=Msa0643230-mRNA-1:exon:10632;Parent=Msa0643230-mRNA-1
chr4_3 CDS 45784791 45785102 45784791 ID=Msa0643230-mRNA-1:cds;Parent=Msa0643230-mRNA-1
chr4_3 CDS 45785408 45785752 45785408 ID=Msa0643230-mRNA-1:cds;Parent=Msa0643230-mRNA-1
chr4_3 three_prime_UTR 45785753 45785903 45785753 ID=Msa0643230-mRNA-1:three_prime_utr;Parent=Msa0643230-mRNA-1
Gene Sequence

>Msa0643230

ATGGCAGATCAAGTGAAGCTACATGGATTTTGGTACAGTCCTTTTACTTTGAGGGTAGTATTGACCCTTAAGCTAAAAGGTATACCATATGAGAACATAGAAGAAGATCGTTTCAACAAGAGCCCTCAACTTCTTCAATACAATCCAGTGCACAAGAAAACTCCGGTGTTGGTTCATGGTGGAAAACCTCTATGTGAGTCTATGATCATTGTTGAATATATTGATGAGATATGGCCACAGTACCCTTTGCTTCCTGTTGATCCCTATGAGAGAGCCCAAGCTCGGTTCTGGGTAAAATATGTTGATGACATTATTCCTGCAGTTGGTGCACTCGTTAGTAGCGGTGGCGATGAAGAGCGGAAGAATACCATAGCGAAAATCTGGGAACATCTTAGAGTTGTTGAAGAACAATGCATTGACCACAAGAAGAAACTTTTTGGAGGAGACACTATTAACATTGTGGACATAGCTCTTGGATCAACTATCAAGTTTCTTGTAACTATTGAAGATATCATTGAATTTAAGATCCTAGCAGCTGAGAAATTCCCTCACTTGCATGCATGGTTTGAAAATTTCAAGAATGTACCTGTCATAGGTGAAAATCTTCCTGATCATGAGAAACTGATAGCTTTTATGAAGGCTGTCATACAAAAGTAG

Protein sequence

>Msa0643230

MADQVKLHGFWYSPFTLRVVLTLKLKGIPYENIEEDRFNKSPQLLQYNPVHKKTPVLVHGGKPLCESMIIVEYIDEIWPQYPLLPVDPYERAQARFWVKYVDDIIPAVGALVSSGGDEERKNTIAKIWEHLRVVEEQCIDHKKKLFGGDTINIVDIALGSTIKFLVTIEDIIEFKILAAEKFPHLHAWFENFKNVPVIGENLPDHEKLIAFMKAVIQK*