Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372810 | XP_013464840.1 | 97.436 | 312 | 6 | 2 | 3 | 314 | 4 | 313 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372810 | sp|Q0V7X4|FIT_ARATH | 52.252 | 333 | 120 | 10 | 1 | 314 | 5 | 317 | 7.37e-103 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372810 | A0A072VL86 | 97.436 | 312 | 6 | 2 | 3 | 314 | 4 | 313 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1372810 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643230 | Msa1372810 | 0.803201 | 3.902992e-49 | -8.615850e-47 |
| Msa0784780 | Msa1372810 | -0.814650 | 1.383023e-51 | -8.615850e-47 |
| Msa0162170 | Msa1372810 | -0.802881 | 4.545725e-49 | -8.615850e-47 |
| Msa0163690 | Msa1372810 | 0.804110 | 2.527663e-49 | -8.615850e-47 |
| Msa1259570 | Msa1372810 | 0.829942 | 3.882144e-55 | -8.615850e-47 |
| Msa0395220 | Msa1372810 | 0.804861 | 1.762766e-49 | -8.615850e-47 |
| Msa1007900 | Msa1372810 | 0.828221 | 1.014103e-54 | -8.615850e-47 |
| Msa1049380 | Msa1372810 | 0.810602 | 1.062372e-50 | -8.615850e-47 |
| Msa1092310 | Msa1372810 | 0.808016 | 3.809463e-50 | -8.615850e-47 |
| Msa0257760 | Msa1372810 | 0.811086 | 8.345582e-51 | -8.615850e-47 |
| Msa0282830 | Msa1372810 | 0.839369 | 1.651388e-57 | -8.615850e-47 |
| Msa0297030 | Msa1372810 | 0.995661 | 1.504442e-218 | -8.615850e-47 |
| Msa0321240 | Msa1372810 | 0.833151 | 6.289202e-56 | -8.615850e-47 |
| Msa0345050 | Msa1372810 | 0.800745 | 1.247849e-48 | -8.615850e-47 |
| Msa0357550 | Msa1372810 | 0.812378 | 4.369591e-51 | -8.615850e-47 |
| Msa0357560 | Msa1372810 | 0.802384 | 5.755311e-49 | -8.615850e-47 |
| Msa1136690 | Msa1372810 | 0.821450 | 4.012297e-53 | -8.615850e-47 |
| Msa1136760 | Msa1372810 | 0.805126 | 1.551382e-49 | -8.615850e-47 |
| Msa0566280 | Msa1372810 | 0.814885 | 1.226572e-51 | -8.615850e-47 |
| Msa0858250 | Msa1372810 | -0.809518 | 1.818546e-50 | -8.615850e-47 |
| Msa0873910 | Msa1372810 | 0.800183 | 1.624204e-48 | -8.615850e-47 |
| Msa0896930 | Msa1372810 | 0.835449 | 1.667389e-56 | -8.615850e-47 |
| Msa0906660 | Msa1372810 | 0.805427 | 1.341687e-49 | -8.615850e-47 |
| Msa0910170 | Msa1372810 | 0.809588 | 1.757073e-50 | -8.615850e-47 |
| Msa0925940 | Msa1372810 | 0.805844 | 1.096981e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372810 | MtrunA17_Chr2g0320291 | 97.436 | 312 | 6 | 2 | 3 | 314 | 4 | 313 | 0.0 | 618 |
| Msa1372810 | MtrunA17_Chr4g0028071 | 64.526 | 327 | 93 | 10 | 2 | 314 | 16 | 333 | 3.77e-131 | 376 |
| Msa1372810 | MtrunA17_Chr8g0365711 | 34.591 | 159 | 83 | 3 | 126 | 270 | 236 | 387 | 2.27e-20 | 90.9 |
| Msa1372810 | MtrunA17_Chr1g0211081 | 29.362 | 235 | 128 | 7 | 63 | 259 | 239 | 473 | 1.67e-19 | 89.0 |
| Msa1372810 | MtrunA17_Chr3g0131691 | 30.645 | 186 | 108 | 4 | 89 | 259 | 257 | 436 | 2.25e-17 | 82.4 |
| Msa1372810 | MtrunA17_Chr2g0298751 | 26.203 | 187 | 117 | 3 | 133 | 301 | 51 | 234 | 1.70e-16 | 77.4 |
| Msa1372810 | MtrunA17_Chr8g0366751 | 30.864 | 162 | 93 | 5 | 138 | 283 | 466 | 624 | 7.31e-15 | 75.1 |
| Msa1372810 | MtrunA17_Chr4g0048851 | 31.548 | 168 | 108 | 4 | 122 | 288 | 37 | 198 | 1.19e-14 | 71.6 |
| Msa1372810 | MtrunA17_Chr4g0054571 | 29.825 | 171 | 97 | 3 | 98 | 258 | 127 | 284 | 2.83e-14 | 72.4 |
| Msa1372810 | MtrunA17_Chr5g0411341 | 30.488 | 164 | 91 | 5 | 138 | 283 | 497 | 655 | 4.08e-14 | 72.8 |
| Msa1372810 | MtrunA17_Chr7g0275821 | 30.464 | 151 | 97 | 4 | 138 | 287 | 256 | 399 | 6.85e-14 | 71.6 |
| Msa1372810 | MtrunA17_Chr7g0252041 | 28.859 | 149 | 90 | 2 | 133 | 266 | 285 | 432 | 9.48e-14 | 71.6 |
| Msa1372810 | MtrunA17_Chr4g0049331 | 26.404 | 178 | 124 | 5 | 97 | 270 | 99 | 273 | 6.69e-12 | 65.1 |
| Msa1372810 | MtrunA17_Chr8g0346151 | 33.708 | 89 | 54 | 1 | 138 | 221 | 283 | 371 | 8.99e-12 | 65.5 |
| Msa1372810 | MtrunA17_Chr8g0346161 | 28.421 | 190 | 98 | 9 | 113 | 276 | 259 | 436 | 1.97e-11 | 64.3 |
| Msa1372810 | MtrunA17_Chr1g0153241 | 32.143 | 112 | 64 | 3 | 79 | 186 | 44 | 147 | 2.02e-11 | 63.5 |
| Msa1372810 | MtrunA17_Chr7g0260841 | 48.077 | 52 | 27 | 0 | 138 | 189 | 359 | 410 | 2.59e-11 | 64.3 |
| Msa1372810 | MtrunA17_Chr5g0400671 | 30.435 | 138 | 85 | 4 | 136 | 268 | 156 | 287 | 9.04e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372810 | AT2G28160.1 | 52.252 | 333 | 120 | 10 | 1 | 314 | 5 | 317 | 7.49e-104 | 306 |
| Msa1372810 | AT2G28160.2 | 51.682 | 327 | 119 | 10 | 1 | 308 | 5 | 311 | 9.67e-100 | 296 |
| Msa1372810 | AT4G29930.6 | 34.682 | 173 | 108 | 3 | 133 | 305 | 53 | 220 | 3.02e-24 | 99.0 |
| Msa1372810 | AT4G29930.2 | 34.682 | 173 | 105 | 4 | 133 | 305 | 53 | 217 | 4.02e-23 | 95.9 |
| Msa1372810 | AT5G57150.1 | 33.333 | 192 | 107 | 6 | 122 | 297 | 40 | 226 | 9.32e-23 | 95.1 |
| Msa1372810 | AT4G29930.5 | 35.099 | 151 | 92 | 3 | 133 | 283 | 53 | 197 | 2.97e-22 | 93.6 |
| Msa1372810 | AT5G57150.2 | 34.078 | 179 | 99 | 5 | 122 | 284 | 41 | 216 | 3.19e-22 | 93.2 |
| Msa1372810 | AT5G57150.5 | 35.758 | 165 | 87 | 5 | 122 | 270 | 40 | 201 | 3.95e-22 | 92.8 |
| Msa1372810 | AT5G57150.3 | 35.758 | 165 | 87 | 5 | 122 | 270 | 41 | 202 | 5.30e-22 | 92.4 |
| Msa1372810 | AT5G57150.4 | 35.758 | 165 | 87 | 5 | 122 | 270 | 41 | 202 | 1.59e-21 | 92.4 |
| Msa1372810 | AT2G16910.1 | 36.025 | 161 | 77 | 4 | 132 | 267 | 312 | 471 | 3.51e-21 | 94.4 |
| Msa1372810 | AT4G29930.1 | 31.156 | 199 | 106 | 5 | 133 | 305 | 53 | 246 | 4.80e-20 | 87.8 |
| Msa1372810 | AT4G29930.3 | 31.073 | 177 | 93 | 4 | 133 | 283 | 53 | 226 | 5.55e-19 | 85.1 |
| Msa1372810 | AT4G29930.7 | 31.073 | 177 | 93 | 4 | 133 | 283 | 53 | 226 | 5.55e-19 | 85.1 |
| Msa1372810 | AT2G46510.1 | 30.726 | 179 | 99 | 6 | 119 | 288 | 372 | 534 | 1.14e-17 | 84.0 |
| Msa1372810 | AT1G01260.1 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
| Msa1372810 | AT1G01260.2 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
| Msa1372810 | AT1G01260.3 | 33.155 | 187 | 103 | 4 | 95 | 281 | 396 | 560 | 1.47e-16 | 80.5 |
| Msa1372810 | AT4G29930.4 | 47.143 | 70 | 37 | 0 | 133 | 202 | 53 | 122 | 1.56e-15 | 73.9 |
| Msa1372810 | AT4G17880.1 | 28.188 | 149 | 103 | 3 | 138 | 283 | 420 | 567 | 2.22e-14 | 73.9 |
| Msa1372810 | AT1G12860.2 | 29.932 | 147 | 85 | 4 | 133 | 266 | 266 | 407 | 1.71e-13 | 70.9 |
| Msa1372810 | AT1G12860.1 | 29.932 | 147 | 85 | 4 | 133 | 266 | 266 | 407 | 2.07e-13 | 70.9 |
| Msa1372810 | AT3G26744.1 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
| Msa1372810 | AT3G26744.4 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
| Msa1372810 | AT3G26744.2 | 30.612 | 147 | 88 | 3 | 133 | 266 | 306 | 451 | 2.97e-13 | 70.5 |
| Msa1372810 | AT3G26744.6 | 31.293 | 147 | 87 | 4 | 133 | 266 | 306 | 451 | 3.02e-13 | 70.5 |
| Msa1372810 | AT1G32640.1 | 30.000 | 150 | 100 | 4 | 138 | 283 | 456 | 604 | 2.79e-12 | 67.8 |
| Msa1372810 | AT5G46760.1 | 29.091 | 165 | 85 | 6 | 138 | 283 | 419 | 570 | 7.98e-12 | 66.2 |
| Msa1372810 | AT2G22750.1 | 26.582 | 158 | 105 | 3 | 127 | 275 | 119 | 274 | 2.62e-11 | 63.9 |
| Msa1372810 | AT2G22750.4 | 26.582 | 158 | 105 | 3 | 127 | 275 | 147 | 302 | 2.69e-11 | 63.9 |
| Msa1372810 | AT2G22750.5 | 26.582 | 158 | 105 | 3 | 127 | 275 | 143 | 298 | 2.80e-11 | 63.9 |
| Msa1372810 | AT2G22750.3 | 26.582 | 158 | 105 | 3 | 127 | 275 | 147 | 302 | 3.11e-11 | 63.9 |
| Msa1372810 | AT2G22750.2 | 26.582 | 158 | 105 | 3 | 127 | 275 | 119 | 274 | 3.15e-11 | 63.5 |
| Msa1372810 | AT1G10610.3 | 45.161 | 62 | 34 | 0 | 132 | 193 | 165 | 226 | 6.85e-11 | 62.8 |
| Msa1372810 | AT4G37850.2 | 25.909 | 220 | 123 | 9 | 61 | 258 | 80 | 281 | 7.51e-11 | 62.8 |
| Msa1372810 | AT4G37850.1 | 25.909 | 220 | 123 | 9 | 61 | 258 | 80 | 281 | 7.51e-11 | 62.8 |
| Msa1372810 | AT1G10610.2 | 45.161 | 62 | 34 | 0 | 132 | 193 | 232 | 293 | 8.71e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTGAATGCTGAGGTTTC+TGG | 0.189821 | tig0019325:+21256 | Msa1372810:CDS |
| TGTTATGATGGAGAGGTTAA+AGG | 0.231584 | tig0019325:+20830 | Msa1372810:CDS |
| TATTGTTGTGATCAAATAAT+AGG | 0.246719 | tig0019325:-20739 | None:intergenic |
| GCTTTATGCATTGCGTTCTT+TGG | 0.304101 | tig0019325:+21000 | Msa1372810:CDS |
| ATGGATAAGGCCTCTATAAT+TGG | 0.313859 | tig0019325:+21190 | Msa1372810:CDS |
| TCGATAAATTGATCAAAGTT+TGG | 0.327610 | tig0019325:-20608 | None:intergenic |
| GTCATGCAGCTCAAAGTTAT+TGG | 0.328211 | tig0019325:-20573 | None:intergenic |
| CTAATTACCTTTGTAATGTT+GGG | 0.360034 | tig0019325:-21025 | None:intergenic |
| ACTAATTACCTTTGTAATGT+TGG | 0.365158 | tig0019325:-21026 | None:intergenic |
| ACTTCCTAGCTTGTGCTTGA+AGG | 0.382012 | tig0019325:-21237 | None:intergenic |
| ACCTTCAAAATTTGAAGCTA+TGG | 0.386796 | tig0019325:+22013 | Msa1372810:CDS |
| GGCTCCTTCTCTTGTTATGA+TGG | 0.389333 | tig0019325:+20818 | Msa1372810:CDS |
| GAGCCAATTGTTGTAGGGCT+TGG | 0.390918 | tig0019325:-20800 | None:intergenic |
| CAATGTTCAAAATTCAAACT+TGG | 0.395586 | tig0019325:+21820 | Msa1372810:CDS |
| TTGTGATCAAATAATAGGTT+TGG | 0.409993 | tig0019325:-20734 | None:intergenic |
| TTGGAGGAATTGAAAGAAGT+TGG | 0.410526 | tig0019325:-20715 | None:intergenic |
| CAATTTATCGATTTAATTCG+AGG | 0.430612 | tig0019325:+20620 | Msa1372810:CDS |
| AATCCAAGCCCTACAACAAT+TGG | 0.433423 | tig0019325:+20797 | Msa1372810:CDS |
| GAGGAGGAGAGGCAGGATGA+AGG | 0.445153 | tig0019325:+20973 | Msa1372810:CDS |
| CTGAGAGGAGGAGGAGAGGC+AGG | 0.453081 | tig0019325:+20966 | Msa1372810:CDS |
| GAGAAGGAGCCAATTGTTGT+AGG | 0.453789 | tig0019325:-20806 | None:intergenic |
| GAAGATGCAATATCTAACTT+TGG | 0.471684 | tig0019325:+20650 | Msa1372810:CDS |
| CCTTCAAAATTTGAAGCTAT+GGG | 0.474141 | tig0019325:+22014 | Msa1372810:CDS |
| CCTCTCAGAAATGAGAGTCT+TGG | 0.475407 | tig0019325:-20951 | None:intergenic |
| CTCTCATTTCTGAGAGGAGG+AGG | 0.478718 | tig0019325:+20957 | Msa1372810:CDS |
| AATTTGCAAGAAAATTATCC+AGG | 0.484959 | tig0019325:+21354 | Msa1372810:CDS |
| TCAGTGTCTGAAAATTATCA+AGG | 0.485823 | tig0019325:+21295 | Msa1372810:CDS |
| GATGGAGAGGTTAAAGGAGA+AGG | 0.491246 | tig0019325:+20836 | Msa1372810:CDS |
| CAATGAAGCAATCATTGATA+AGG | 0.492027 | tig0019325:-20679 | None:intergenic |
| TGATCAAATAATAGGTTTGG+AGG | 0.499808 | tig0019325:-20731 | None:intergenic |
| CTTCTCTTGTTATGATGGAG+AGG | 0.500496 | tig0019325:+20823 | Msa1372810:CDS |
| ATGGCATGAATTCAAAGCCT+TGG | 0.500719 | tig0019325:-22056 | None:intergenic |
| CATGCAGTGGCTCAAAATGA+TGG | 0.501968 | tig0019325:-22075 | None:intergenic |
| TACTGCATCTCCAATTATAG+AGG | 0.518020 | tig0019325:-21200 | None:intergenic |
| AATAACCTCTTTCCTCCACT+TGG | 0.518798 | tig0019325:-21721 | None:intergenic |
| TATCCACGTACAGATGGATA+AGG | 0.530307 | tig0019325:+21177 | Msa1372810:intron |
| AGAAGGAGCCAATTGTTGTA+GGG | 0.535853 | tig0019325:-20805 | None:intergenic |
| AAAGGAGAAGGAGAAAATGA+TGG | 0.542463 | tig0019325:+20848 | Msa1372810:CDS |
| GAAGGAGAAAATGATGGAGG+TGG | 0.543991 | tig0019325:+20854 | Msa1372810:CDS |
| CTCTCCATCATAACAAGAGA+AGG | 0.545524 | tig0019325:-20822 | None:intergenic |
| CAATCGATGATGCTAACCCT+AGG | 0.549718 | tig0019325:+20912 | Msa1372810:CDS |
| ACCCTAGGGCTAAAACTGAT+AGG | 0.553134 | tig0019325:+20927 | Msa1372810:CDS |
| AATTTGAAGCTATGGGTGGC+TGG | 0.562736 | tig0019325:+22021 | Msa1372810:CDS |
| GGTGTTCTCTAGTGAGTCCA+TGG | 0.563816 | tig0019325:-20552 | None:intergenic |
| ATGACCTTCAAGCACAAGCT+AGG | 0.564350 | tig0019325:+21233 | Msa1372810:CDS |
| ATTTCTGAGAGGAGGAGGAG+AGG | 0.573269 | tig0019325:+20962 | Msa1372810:CDS |
| AGTAGCTGCTTCATTGTACA+AGG | 0.575970 | tig0019325:+21775 | Msa1372810:CDS |
| ATGTTCCAAGTGGAGGAAAG+AGG | 0.591850 | tig0019325:+21716 | Msa1372810:CDS |
| TTTGGTTCCCAACATTACAA+AGG | 0.593392 | tig0019325:+21018 | Msa1372810:CDS |
| AGACTCTCATTTCTGAGAGG+AGG | 0.604951 | tig0019325:+20954 | Msa1372810:CDS |
| GGAGAAGGAGAAAATGATGG+AGG | 0.607003 | tig0019325:+20851 | Msa1372810:CDS |
| AGCTAGGAAGTTGAATGCTG+AGG | 0.609235 | tig0019325:+21249 | Msa1372810:CDS |
| TCAAAATTTGAAGCTATGGG+TGG | 0.609799 | tig0019325:+22017 | Msa1372810:CDS |
| ATATTGTGCAATAAAGGAGA+AGG | 0.612090 | tig0019325:+21752 | Msa1372810:CDS |
| AGGGTTAGCATCATCGATTG+TGG | 0.612799 | tig0019325:-20909 | None:intergenic |
| GGTGGACATGTTCCAAGTGG+AGG | 0.635415 | tig0019325:+21709 | Msa1372810:intron |
| AATCGATGATGCTAACCCTA+GGG | 0.641884 | tig0019325:+20913 | Msa1372810:CDS |
| CCAAGACTCTCATTTCTGAG+AGG | 0.669057 | tig0019325:+20951 | Msa1372810:CDS |
| GTAGGTGGACATGTTCCAAG+TGG | 0.684360 | tig0019325:+21706 | Msa1372810:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAGATAAAATTTTTGTTA+GGG | + | tig0019325:21068-21087 | Msa1372810:intron | 15.0% |
| !!! | ATATGCTTAATATTAATTTG+AGG | + | tig0019325:21116-21135 | Msa1372810:intron | 15.0% |
| !!! | CAAAGATAAAATTTTTGTTA+GGG | + | tig0019325:21068-21087 | Msa1372810:intron | 15.0% |
| !!! | ATATGCTTAATATTAATTTG+AGG | + | tig0019325:21116-21135 | Msa1372810:intron | 15.0% |
| !! | TATTGTTGTGATCAAATAAT+AGG | - | tig0019325:20742-20761 | None:intergenic | 20.0% |
| !!! | GCAAAGATAAAATTTTTGTT+AGG | + | tig0019325:21067-21086 | Msa1372810:intron | 20.0% |
| !! | AATGAAAAATTAATCAAACC+TGG | - | tig0019325:21375-21394 | None:intergenic | 20.0% |
| !! | AGCATTAATCAATGAATTAA+TGG | - | tig0019325:21908-21927 | None:intergenic | 20.0% |
| !!! | TAATTCATTGATTAATGCTT+AGG | + | tig0019325:21909-21928 | Msa1372810:intron | 20.0% |
| !!! | AATTCATTGATTAATGCTTA+GGG | + | tig0019325:21910-21929 | Msa1372810:intron | 20.0% |
| !! | ATTGTTGTGTTGAAAAATAT+AGG | + | tig0019325:21966-21985 | Msa1372810:intron | 20.0% |
| !! | TGTTGAAAAATATAGGTAAA+CGG | + | tig0019325:21973-21992 | Msa1372810:intron | 20.0% |
| !! | TATTGTTGTGATCAAATAAT+AGG | - | tig0019325:20742-20761 | None:intergenic | 20.0% |
| !!! | GCAAAGATAAAATTTTTGTT+AGG | + | tig0019325:21067-21086 | Msa1372810:intron | 20.0% |
| !! | AATGAAAAATTAATCAAACC+TGG | - | tig0019325:21375-21394 | None:intergenic | 20.0% |
| !! | AGCATTAATCAATGAATTAA+TGG | - | tig0019325:21908-21927 | None:intergenic | 20.0% |
| !!! | TAATTCATTGATTAATGCTT+AGG | + | tig0019325:21909-21928 | Msa1372810:intron | 20.0% |
| !!! | AATTCATTGATTAATGCTTA+GGG | + | tig0019325:21910-21929 | Msa1372810:intron | 20.0% |
| !! | ATTGTTGTGTTGAAAAATAT+AGG | + | tig0019325:21966-21985 | Msa1372810:intron | 20.0% |
| !! | TGTTGAAAAATATAGGTAAA+CGG | + | tig0019325:21973-21992 | Msa1372810:intron | 20.0% |
| ! | TCGATAAATTGATCAAAGTT+TGG | - | tig0019325:20611-20630 | None:intergenic | 25.0% |
| !!! | CAATTTATCGATTTAATTCG+AGG | + | tig0019325:20620-20639 | Msa1372810:CDS | 25.0% |
| ! | TTGTGATCAAATAATAGGTT+TGG | - | tig0019325:20737-20756 | None:intergenic | 25.0% |
| ! | CTAATTACCTTTGTAATGTT+GGG | - | tig0019325:21028-21047 | None:intergenic | 25.0% |
| ! | ACTAATTACCTTTGTAATGT+TGG | - | tig0019325:21029-21048 | None:intergenic | 25.0% |
| ! | TCTTTGCAACTAATTGAAAA+AGG | - | tig0019325:21054-21073 | None:intergenic | 25.0% |
| !! | TAATTTTCTTGCAAATTGGA+TGG | - | tig0019325:21351-21370 | None:intergenic | 25.0% |
| !! | TGGATAATTTTCTTGCAAAT+TGG | - | tig0019325:21355-21374 | None:intergenic | 25.0% |
| ! | AATTTGCAAGAAAATTATCC+AGG | + | tig0019325:21354-21373 | Msa1372810:CDS | 25.0% |
| ! | AGACTCATGAAATTATAACT+TGG | - | tig0019325:21425-21444 | None:intergenic | 25.0% |
| !! | AAAAATGTTGGTCTAAGATA+AGG | - | tig0019325:21496-21515 | None:intergenic | 25.0% |
| ! | TGCTGTTAAAGAAAAAATGT+TGG | - | tig0019325:21508-21527 | None:intergenic | 25.0% |
| ! | AAGATAGAAAACTACAAACA+AGG | + | tig0019325:21574-21593 | Msa1372810:intron | 25.0% |
| ! | AGATAGAAAACTACAAACAA+GGG | + | tig0019325:21575-21594 | Msa1372810:intron | 25.0% |
| ! | TTAGACAAACACTTTATAGT+TGG | + | tig0019325:21631-21650 | Msa1372810:intron | 25.0% |
| ! | GCAAAAATATTGTGCAATAA+AGG | + | tig0019325:21746-21765 | Msa1372810:CDS | 25.0% |
| ! | CAATGTTCAAAATTCAAACT+TGG | + | tig0019325:21820-21839 | Msa1372810:CDS | 25.0% |
| ! | ATCAATGAATTAATGGAAGA+GGG | - | tig0019325:21901-21920 | None:intergenic | 25.0% |
| ! | AATCAATGAATTAATGGAAG+AGG | - | tig0019325:21902-21921 | None:intergenic | 25.0% |
| !!! | AAATTTTGAAGGTTCATTTC+TGG | - | tig0019325:22006-22025 | None:intergenic | 25.0% |
| ! | TCGATAAATTGATCAAAGTT+TGG | - | tig0019325:20611-20630 | None:intergenic | 25.0% |
| !!! | CAATTTATCGATTTAATTCG+AGG | + | tig0019325:20620-20639 | Msa1372810:CDS | 25.0% |
| ! | TTGTGATCAAATAATAGGTT+TGG | - | tig0019325:20737-20756 | None:intergenic | 25.0% |
| ! | CTAATTACCTTTGTAATGTT+GGG | - | tig0019325:21028-21047 | None:intergenic | 25.0% |
| ! | ACTAATTACCTTTGTAATGT+TGG | - | tig0019325:21029-21048 | None:intergenic | 25.0% |
| ! | TCTTTGCAACTAATTGAAAA+AGG | - | tig0019325:21054-21073 | None:intergenic | 25.0% |
| !! | TAATTTTCTTGCAAATTGGA+TGG | - | tig0019325:21351-21370 | None:intergenic | 25.0% |
| !! | TGGATAATTTTCTTGCAAAT+TGG | - | tig0019325:21355-21374 | None:intergenic | 25.0% |
| ! | AATTTGCAAGAAAATTATCC+AGG | + | tig0019325:21354-21373 | Msa1372810:CDS | 25.0% |
| ! | AGACTCATGAAATTATAACT+TGG | - | tig0019325:21425-21444 | None:intergenic | 25.0% |
| !! | AAAAATGTTGGTCTAAGATA+AGG | - | tig0019325:21496-21515 | None:intergenic | 25.0% |
| ! | TGCTGTTAAAGAAAAAATGT+TGG | - | tig0019325:21508-21527 | None:intergenic | 25.0% |
| ! | AAGATAGAAAACTACAAACA+AGG | + | tig0019325:21574-21593 | Msa1372810:intron | 25.0% |
| ! | AGATAGAAAACTACAAACAA+GGG | + | tig0019325:21575-21594 | Msa1372810:intron | 25.0% |
| ! | TTAGACAAACACTTTATAGT+TGG | + | tig0019325:21631-21650 | Msa1372810:intron | 25.0% |
| ! | GCAAAAATATTGTGCAATAA+AGG | + | tig0019325:21746-21765 | Msa1372810:CDS | 25.0% |
| ! | CAATGTTCAAAATTCAAACT+TGG | + | tig0019325:21820-21839 | Msa1372810:CDS | 25.0% |
| ! | ATCAATGAATTAATGGAAGA+GGG | - | tig0019325:21901-21920 | None:intergenic | 25.0% |
| ! | AATCAATGAATTAATGGAAG+AGG | - | tig0019325:21902-21921 | None:intergenic | 25.0% |
| !!! | AAATTTTGAAGGTTCATTTC+TGG | - | tig0019325:22006-22025 | None:intergenic | 25.0% |
| GAAGATGCAATATCTAACTT+TGG | + | tig0019325:20650-20669 | Msa1372810:CDS | 30.0% | |
| CAATGAAGCAATCATTGATA+AGG | - | tig0019325:20682-20701 | None:intergenic | 30.0% | |
| TGATCAAATAATAGGTTTGG+AGG | - | tig0019325:20734-20753 | None:intergenic | 30.0% | |
| TTTATATATCCACGTACAGA+TGG | + | tig0019325:21171-21190 | Msa1372810:intron | 30.0% | |
| TCAGTGTCTGAAAATTATCA+AGG | + | tig0019325:21295-21314 | Msa1372810:CDS | 30.0% | |
| GATAGAAAACTACAAACAAG+GGG | + | tig0019325:21576-21595 | Msa1372810:intron | 30.0% | |
| TGTTGTGCATTATGATATGT+AGG | + | tig0019325:21688-21707 | Msa1372810:intron | 30.0% | |
| ATATTGTGCAATAAAGGAGA+AGG | + | tig0019325:21752-21771 | Msa1372810:CDS | 30.0% | |
| GTTATTGATGTCTTTGCTTA+AGG | + | tig0019325:21932-21951 | Msa1372810:intron | 30.0% | |
| ! | ACCTTCAAAATTTGAAGCTA+TGG | + | tig0019325:22013-22032 | Msa1372810:CDS | 30.0% |
| ! | CCTTCAAAATTTGAAGCTAT+GGG | + | tig0019325:22014-22033 | Msa1372810:CDS | 30.0% |
| GAAGATGCAATATCTAACTT+TGG | + | tig0019325:20650-20669 | Msa1372810:CDS | 30.0% | |
| CAATGAAGCAATCATTGATA+AGG | - | tig0019325:20682-20701 | None:intergenic | 30.0% | |
| TGATCAAATAATAGGTTTGG+AGG | - | tig0019325:20734-20753 | None:intergenic | 30.0% | |
| TTTATATATCCACGTACAGA+TGG | + | tig0019325:21171-21190 | Msa1372810:intron | 30.0% | |
| TCAGTGTCTGAAAATTATCA+AGG | + | tig0019325:21295-21314 | Msa1372810:CDS | 30.0% | |
| GATAGAAAACTACAAACAAG+GGG | + | tig0019325:21576-21595 | Msa1372810:intron | 30.0% | |
| TGTTGTGCATTATGATATGT+AGG | + | tig0019325:21688-21707 | Msa1372810:intron | 30.0% | |
| ATATTGTGCAATAAAGGAGA+AGG | + | tig0019325:21752-21771 | Msa1372810:CDS | 30.0% | |
| GTTATTGATGTCTTTGCTTA+AGG | + | tig0019325:21932-21951 | Msa1372810:intron | 30.0% | |
| ! | ACCTTCAAAATTTGAAGCTA+TGG | + | tig0019325:22013-22032 | Msa1372810:CDS | 30.0% |
| ! | CCTTCAAAATTTGAAGCTAT+GGG | + | tig0019325:22014-22033 | Msa1372810:CDS | 30.0% |
| TTGGAGGAATTGAAAGAAGT+TGG | - | tig0019325:20718-20737 | None:intergenic | 35.0% | |
| ! | TGTTATGATGGAGAGGTTAA+AGG | + | tig0019325:20830-20849 | Msa1372810:CDS | 35.0% |
| AAAGGAGAAGGAGAAAATGA+TGG | + | tig0019325:20848-20867 | Msa1372810:CDS | 35.0% | |
| ! | TTTGGTTCCCAACATTACAA+AGG | + | tig0019325:21018-21037 | Msa1372810:CDS | 35.0% |
| ATGGATAAGGCCTCTATAAT+TGG | + | tig0019325:21190-21209 | Msa1372810:CDS | 35.0% | |
| TACTGCATCTCCAATTATAG+AGG | - | tig0019325:21203-21222 | None:intergenic | 35.0% | |
| TGTGCATTATGATATGTAGG+TGG | + | tig0019325:21691-21710 | Msa1372810:intron | 35.0% | |
| ! | CCCATAGCTTCAAATTTTGA+AGG | - | tig0019325:22017-22036 | None:intergenic | 35.0% |
| ! | TCAAAATTTGAAGCTATGGG+TGG | + | tig0019325:22017-22036 | Msa1372810:CDS | 35.0% |
| TTGGAGGAATTGAAAGAAGT+TGG | - | tig0019325:20718-20737 | None:intergenic | 35.0% | |
| ! | TGTTATGATGGAGAGGTTAA+AGG | + | tig0019325:20830-20849 | Msa1372810:CDS | 35.0% |
| AAAGGAGAAGGAGAAAATGA+TGG | + | tig0019325:20848-20867 | Msa1372810:CDS | 35.0% | |
| ! | TTTGGTTCCCAACATTACAA+AGG | + | tig0019325:21018-21037 | Msa1372810:CDS | 35.0% |
| ATGGATAAGGCCTCTATAAT+TGG | + | tig0019325:21190-21209 | Msa1372810:CDS | 35.0% | |
| TACTGCATCTCCAATTATAG+AGG | - | tig0019325:21203-21222 | None:intergenic | 35.0% | |
| TGTGCATTATGATATGTAGG+TGG | + | tig0019325:21691-21710 | Msa1372810:intron | 35.0% | |
| ! | CCCATAGCTTCAAATTTTGA+AGG | - | tig0019325:22017-22036 | None:intergenic | 35.0% |
| ! | TCAAAATTTGAAGCTATGGG+TGG | + | tig0019325:22017-22036 | Msa1372810:CDS | 35.0% |
| GTCATGCAGCTCAAAGTTAT+TGG | - | tig0019325:20576-20595 | None:intergenic | 40.0% | |
| AATCCAAGCCCTACAACAAT+TGG | + | tig0019325:20797-20816 | Msa1372810:CDS | 40.0% | |
| AGAAGGAGCCAATTGTTGTA+GGG | - | tig0019325:20808-20827 | None:intergenic | 40.0% | |
| CTCTCCATCATAACAAGAGA+AGG | - | tig0019325:20825-20844 | None:intergenic | 40.0% | |
| ! | CTTCTCTTGTTATGATGGAG+AGG | + | tig0019325:20823-20842 | Msa1372810:CDS | 40.0% |
| AATCGATGATGCTAACCCTA+GGG | + | tig0019325:20913-20932 | Msa1372810:CDS | 40.0% | |
| !! | ACCTATCAGTTTTAGCCCTA+GGG | - | tig0019325:20931-20950 | None:intergenic | 40.0% |
| GCTTTATGCATTGCGTTCTT+TGG | + | tig0019325:21000-21019 | Msa1372810:CDS | 40.0% | |
| TATCCACGTACAGATGGATA+AGG | + | tig0019325:21177-21196 | Msa1372810:intron | 40.0% | |
| AAGTTGAATGCTGAGGTTTC+TGG | + | tig0019325:21256-21275 | Msa1372810:CDS | 40.0% | |
| !! | AAACAAGGGGCATCAGATAT+AGG | + | tig0019325:21589-21608 | Msa1372810:intron | 40.0% |
| AATAACCTCTTTCCTCCACT+TGG | - | tig0019325:21724-21743 | None:intergenic | 40.0% | |
| AGTAGCTGCTTCATTGTACA+AGG | + | tig0019325:21775-21794 | Msa1372810:CDS | 40.0% | |
| ATGGCATGAATTCAAAGCCT+TGG | - | tig0019325:22059-22078 | None:intergenic | 40.0% | |
| GTCATGCAGCTCAAAGTTAT+TGG | - | tig0019325:20576-20595 | None:intergenic | 40.0% | |
| AATCCAAGCCCTACAACAAT+TGG | + | tig0019325:20797-20816 | Msa1372810:CDS | 40.0% | |
| AGAAGGAGCCAATTGTTGTA+GGG | - | tig0019325:20808-20827 | None:intergenic | 40.0% | |
| CTCTCCATCATAACAAGAGA+AGG | - | tig0019325:20825-20844 | None:intergenic | 40.0% | |
| ! | CTTCTCTTGTTATGATGGAG+AGG | + | tig0019325:20823-20842 | Msa1372810:CDS | 40.0% |
| AATCGATGATGCTAACCCTA+GGG | + | tig0019325:20913-20932 | Msa1372810:CDS | 40.0% | |
| !! | ACCTATCAGTTTTAGCCCTA+GGG | - | tig0019325:20931-20950 | None:intergenic | 40.0% |
| GCTTTATGCATTGCGTTCTT+TGG | + | tig0019325:21000-21019 | Msa1372810:CDS | 40.0% | |
| TATCCACGTACAGATGGATA+AGG | + | tig0019325:21177-21196 | Msa1372810:intron | 40.0% | |
| AAGTTGAATGCTGAGGTTTC+TGG | + | tig0019325:21256-21275 | Msa1372810:CDS | 40.0% | |
| !! | AAACAAGGGGCATCAGATAT+AGG | + | tig0019325:21589-21608 | Msa1372810:intron | 40.0% |
| AATAACCTCTTTCCTCCACT+TGG | - | tig0019325:21724-21743 | None:intergenic | 40.0% | |
| AGTAGCTGCTTCATTGTACA+AGG | + | tig0019325:21775-21794 | Msa1372810:CDS | 40.0% | |
| ATGGCATGAATTCAAAGCCT+TGG | - | tig0019325:22059-22078 | None:intergenic | 40.0% | |
| GAGAAGGAGCCAATTGTTGT+AGG | - | tig0019325:20809-20828 | None:intergenic | 45.0% | |
| ! | GGCTCCTTCTCTTGTTATGA+TGG | + | tig0019325:20818-20837 | Msa1372810:CDS | 45.0% |
| GATGGAGAGGTTAAAGGAGA+AGG | + | tig0019325:20836-20855 | Msa1372810:CDS | 45.0% | |
| GGAGAAGGAGAAAATGATGG+AGG | + | tig0019325:20851-20870 | Msa1372810:CDS | 45.0% | |
| ! | GAAGGAGAAAATGATGGAGG+TGG | + | tig0019325:20854-20873 | Msa1372810:CDS | 45.0% |
| ! | AGGGTTAGCATCATCGATTG+TGG | - | tig0019325:20912-20931 | None:intergenic | 45.0% |
| CAATCGATGATGCTAACCCT+AGG | + | tig0019325:20912-20931 | Msa1372810:CDS | 45.0% | |
| ACCCTAGGGCTAAAACTGAT+AGG | + | tig0019325:20927-20946 | Msa1372810:CDS | 45.0% | |
| !! | GACCTATCAGTTTTAGCCCT+AGG | - | tig0019325:20932-20951 | None:intergenic | 45.0% |
| CCTCTCAGAAATGAGAGTCT+TGG | - | tig0019325:20954-20973 | None:intergenic | 45.0% | |
| CCAAGACTCTCATTTCTGAG+AGG | + | tig0019325:20951-20970 | Msa1372810:CDS | 45.0% | |
| ! | AGACTCTCATTTCTGAGAGG+AGG | + | tig0019325:20954-20973 | Msa1372810:CDS | 45.0% |
| ATGACCTTCAAGCACAAGCT+AGG | + | tig0019325:21233-21252 | Msa1372810:CDS | 45.0% | |
| ! | ACTTCCTAGCTTGTGCTTGA+AGG | - | tig0019325:21240-21259 | None:intergenic | 45.0% |
| AGCTAGGAAGTTGAATGCTG+AGG | + | tig0019325:21249-21268 | Msa1372810:CDS | 45.0% | |
| TGTTCGTCTTGTGCATAGAC+TGG | - | tig0019325:21545-21564 | None:intergenic | 45.0% | |
| ATGTTCCAAGTGGAGGAAAG+AGG | + | tig0019325:21716-21735 | Msa1372810:CDS | 45.0% | |
| ! | AATTTGAAGCTATGGGTGGC+TGG | + | tig0019325:22021-22040 | Msa1372810:CDS | 45.0% |
| GAGAAGGAGCCAATTGTTGT+AGG | - | tig0019325:20809-20828 | None:intergenic | 45.0% | |
| ! | GGCTCCTTCTCTTGTTATGA+TGG | + | tig0019325:20818-20837 | Msa1372810:CDS | 45.0% |
| GATGGAGAGGTTAAAGGAGA+AGG | + | tig0019325:20836-20855 | Msa1372810:CDS | 45.0% | |
| GGAGAAGGAGAAAATGATGG+AGG | + | tig0019325:20851-20870 | Msa1372810:CDS | 45.0% | |
| ! | GAAGGAGAAAATGATGGAGG+TGG | + | tig0019325:20854-20873 | Msa1372810:CDS | 45.0% |
| ! | AGGGTTAGCATCATCGATTG+TGG | - | tig0019325:20912-20931 | None:intergenic | 45.0% |
| CAATCGATGATGCTAACCCT+AGG | + | tig0019325:20912-20931 | Msa1372810:CDS | 45.0% | |
| ACCCTAGGGCTAAAACTGAT+AGG | + | tig0019325:20927-20946 | Msa1372810:CDS | 45.0% | |
| !! | GACCTATCAGTTTTAGCCCT+AGG | - | tig0019325:20932-20951 | None:intergenic | 45.0% |
| CCTCTCAGAAATGAGAGTCT+TGG | - | tig0019325:20954-20973 | None:intergenic | 45.0% | |
| CCAAGACTCTCATTTCTGAG+AGG | + | tig0019325:20951-20970 | Msa1372810:CDS | 45.0% | |
| ! | AGACTCTCATTTCTGAGAGG+AGG | + | tig0019325:20954-20973 | Msa1372810:CDS | 45.0% |
| ATGACCTTCAAGCACAAGCT+AGG | + | tig0019325:21233-21252 | Msa1372810:CDS | 45.0% | |
| ! | ACTTCCTAGCTTGTGCTTGA+AGG | - | tig0019325:21240-21259 | None:intergenic | 45.0% |
| AGCTAGGAAGTTGAATGCTG+AGG | + | tig0019325:21249-21268 | Msa1372810:CDS | 45.0% | |
| TGTTCGTCTTGTGCATAGAC+TGG | - | tig0019325:21545-21564 | None:intergenic | 45.0% | |
| ATGTTCCAAGTGGAGGAAAG+AGG | + | tig0019325:21716-21735 | Msa1372810:CDS | 45.0% | |
| ! | AATTTGAAGCTATGGGTGGC+TGG | + | tig0019325:22021-22040 | Msa1372810:CDS | 45.0% |
| GAGCCAATTGTTGTAGGGCT+TGG | - | tig0019325:20803-20822 | None:intergenic | 50.0% | |
| ! | CTCTCATTTCTGAGAGGAGG+AGG | + | tig0019325:20957-20976 | Msa1372810:CDS | 50.0% |
| ! | ATTTCTGAGAGGAGGAGGAG+AGG | + | tig0019325:20962-20981 | Msa1372810:CDS | 50.0% |
| ! | AGGCCTTATCCATCTGTACG+TGG | - | tig0019325:21183-21202 | None:intergenic | 50.0% |
| GTAGGTGGACATGTTCCAAG+TGG | + | tig0019325:21706-21725 | Msa1372810:intron | 50.0% | |
| ! | GCTGGTGCTCTTTTGAACCA+AGG | + | tig0019325:22039-22058 | Msa1372810:CDS | 50.0% |
| GAGCCAATTGTTGTAGGGCT+TGG | - | tig0019325:20803-20822 | None:intergenic | 50.0% | |
| ! | CTCTCATTTCTGAGAGGAGG+AGG | + | tig0019325:20957-20976 | Msa1372810:CDS | 50.0% |
| ! | ATTTCTGAGAGGAGGAGGAG+AGG | + | tig0019325:20962-20981 | Msa1372810:CDS | 50.0% |
| ! | AGGCCTTATCCATCTGTACG+TGG | - | tig0019325:21183-21202 | None:intergenic | 50.0% |
| GTAGGTGGACATGTTCCAAG+TGG | + | tig0019325:21706-21725 | Msa1372810:intron | 50.0% | |
| ! | GCTGGTGCTCTTTTGAACCA+AGG | + | tig0019325:22039-22058 | Msa1372810:CDS | 50.0% |
| GGTGGACATGTTCCAAGTGG+AGG | + | tig0019325:21709-21728 | Msa1372810:intron | 55.0% | |
| GGTGGACATGTTCCAAGTGG+AGG | + | tig0019325:21709-21728 | Msa1372810:intron | 55.0% | |
| GAGGAGGAGAGGCAGGATGA+AGG | + | tig0019325:20973-20992 | Msa1372810:CDS | 60.0% | |
| GAGGAGGAGAGGCAGGATGA+AGG | + | tig0019325:20973-20992 | Msa1372810:CDS | 60.0% | |
| CTGAGAGGAGGAGGAGAGGC+AGG | + | tig0019325:20966-20985 | Msa1372810:CDS | 65.0% | |
| CTGAGAGGAGGAGGAGAGGC+AGG | + | tig0019325:20966-20985 | Msa1372810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019325 | gene | 20554 | 22086 | 20554 | ID=Msa1372810;Name=Msa1372810 |
| tig0019325 | mRNA | 20554 | 22086 | 20554 | ID=Msa1372810-mRNA-1;Parent=Msa1372810;Name=Msa1372810-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|4|0|314 |
| tig0019325 | exon | 20554 | 21039 | 20554 | ID=Msa1372810-mRNA-1:exon:2955;Parent=Msa1372810-mRNA-1 |
| tig0019325 | exon | 21190 | 21375 | 21190 | ID=Msa1372810-mRNA-1:exon:2956;Parent=Msa1372810-mRNA-1 |
| tig0019325 | exon | 21710 | 21883 | 21710 | ID=Msa1372810-mRNA-1:exon:2957;Parent=Msa1372810-mRNA-1 |
| tig0019325 | exon | 21988 | 22086 | 21988 | ID=Msa1372810-mRNA-1:exon:2958;Parent=Msa1372810-mRNA-1 |
| tig0019325 | CDS | 20554 | 21039 | 20554 | ID=Msa1372810-mRNA-1:cds;Parent=Msa1372810-mRNA-1 |
| tig0019325 | CDS | 21190 | 21375 | 21190 | ID=Msa1372810-mRNA-1:cds;Parent=Msa1372810-mRNA-1 |
| tig0019325 | CDS | 21710 | 21883 | 21710 | ID=Msa1372810-mRNA-1:cds;Parent=Msa1372810-mRNA-1 |
| tig0019325 | CDS | 21988 | 22086 | 21988 | ID=Msa1372810-mRNA-1:cds;Parent=Msa1372810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
