AlfalfaGEDB | Msa0896930

M. sativa cultivar zhongmu-4 / Msa0896930

KEGG: -
GO: -
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896930	KEH26885.1	89.744	78	8	0	1	78	1	78	7.89e-40	149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896930	sp\|P26204\|BGLS_TRIRP	60.000	75	22	2	11	78	4	77	2.96e-19	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011450	Msa0896930	-0.834051	3.746629e-56	-8.615850e-47
Msa0047660	Msa0896930	-0.807335	5.314347e-50	-8.615850e-47
Msa0126000	Msa0896930	-0.823096	1.665057e-53	-8.615850e-47
Msa0129620	Msa0896930	0.816925	4.300961e-52	-8.615850e-47
Msa0164490	Msa0896930	0.822849	1.900462e-53	-8.615850e-47
Msa0167570	Msa0896930	-0.810738	9.925789e-51	-8.615850e-47
Msa0225190	Msa0896930	-0.828511	8.634281e-55	-8.615850e-47
Msa0241750	Msa0896930	0.809374	1.953054e-50	-8.615850e-47
Msa0262350	Msa0896930	-0.815572	8.630636e-52	-8.615850e-47
Msa0297030	Msa0896930	0.832648	8.384860e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896930	MtrunA17_Chr6g0482081	88.608	79	9	0	1	79	1	79	2.49e-43	149
Msa0896930	MtrunA17_Chr6g0482131	89.744	78	8	0	1	78	1	78	3.47e-43	149
Msa0896930	MtrunA17_Chr6g0482071	71.429	77	20	2	3	78	4	79	9.14e-29	110
Msa0896930	MtrunA17_Chr8g0388651	65.385	78	13	1	86	149	74	151	1.54e-23	95.5
Msa0896930	MtrunA17_Chr4g0033321	57.895	76	27	2	3	78	5	75	1.98e-22	92.0
Msa0896930	MtrunA17_Chr4g0033401	55.263	76	30	1	3	78	5	76	5.59e-21	88.2
Msa0896930	MtrunA17_Chr4g0033261	62.121	66	25	0	13	78	18	83	6.70e-21	87.8
Msa0896930	MtrunA17_Chr3g0087191	84.091	44	7	0	35	78	21	64	1.25e-20	82.8
Msa0896930	MtrunA17_Chr4g0033331	84.091	44	7	0	35	78	38	81	1.99e-20	86.7
Msa0896930	MtrunA17_Chr2g0329201	53.750	80	28	4	1	78	1	73	5.01e-20	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0896930	AT3G60120.1	68.889	45	14	0	34	78	12	56	2.86e-16	75.1
Msa0896930	AT2G44480.1	70.213	47	14	0	32	78	31	77	3.00e-16	75.1
Msa0896930	AT2G44480.3	70.213	47	14	0	32	78	62	108	3.23e-16	74.7
Msa0896930	AT5G24550.1	74.419	43	11	0	36	78	32	74	6.81e-16	73.9
Msa0896930	AT2G44450.1	57.407	54	23	0	25	78	20	73	8.07e-16	73.6
Msa0896930	AT2G44480.4	70.213	47	14	0	32	78	62	108	1.07e-15	73.2
Msa0896930	AT1G26560.1	66.667	42	14	0	36	77	32	73	1.68e-15	72.8
Msa0896930	AT1G52400.3	46.667	75	39	1	5	78	7	81	2.48e-15	72.4
Msa0896930	AT1G52400.1	46.667	75	39	1	5	78	7	81	2.48e-15	72.4
Msa0896930	AT2G44490.1	65.909	44	15	0	35	78	13	56	2.53e-15	72.4

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Find 43 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATAACATCATCGCCTT+CGG	0.383549	6_1:+88140738	None:intergenic
AACAGCTTCATCAGCTTACC+AGG	0.455098	6_1:-88141917	Msa0896930:intron
AAGGTGTTGTGGTGGAGATT+TGG	0.332973	6_1:-88140689	Msa0896930:CDS
AATCGTAGTAGTTTCCCAGA+AGG	0.583112	6_1:-88141952	Msa0896930:CDS
ACGCTTCCGATGAAATATGT+TGG	0.581759	6_1:-88140783	Msa0896930:CDS
AGCGCTTGTTGTTGCGGGTG+TGG	0.474039	6_1:-88140712	Msa0896930:CDS
ATCGGAAGCGTGACGAACAT+CGG	0.545203	6_1:+88140795	None:intergenic
ATGAAATATGTTGGTTTAGA+GGG	0.430643	6_1:-88140774	Msa0896930:CDS
CGTTGTGATTCTTAGTTATG+TGG	0.440160	6_1:-88142028	Msa0896930:CDS
CTAAGAATCACAACGATTCC+TGG	0.367802	6_1:+88142036	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCAAAGATAAAACCTTCT+GGG	+	chr6_1:88140760-88140779	None:intergenic	30.0%
ACAATTAACAAAAGATAGGG+GGG	+	chr6_1:88141028-88141047	None:intergenic	30.0%
CACAATTAACAAAAGATAGG+GGG	+	chr6_1:88141029-88141048	None:intergenic	30.0%
GCACAATTAACAAAAGATAG+GGG	+	chr6_1:88141030-88141049	None:intergenic	30.0%
CGCACAATTAACAAAAGATA+GGG	+	chr6_1:88141031-88141050	None:intergenic	30.0%
TCGCACAATTAACAAAAGAT+AGG	+	chr6_1:88141032-88141051	None:intergenic	30.0%
AAACACAACTGACAAAAGAT+GGG	+	chr6_1:88141092-88141111	None:intergenic	30.0%
AAAACACAACTGACAAAAGA+TGG	+	chr6_1:88141093-88141112	None:intergenic	30.0%
TCACTAAAAAAGAAGAAGAG+GGG	-	chr6_1:88141166-88141185	Msa0896930:CDS	30.0%
TGCACAATTGACAAAAAGAT+AGG	-	chr6_1:88141198-88141217	Msa0896930:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	88140635	88142082	88140635	ID=Msa0896930;Name=Msa0896930
chr6_1	mRNA	88140635	88142082	88140635	ID=Msa0896930-mRNA-1;Parent=Msa0896930;Name=Msa0896930-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|1\|1\|3\|0\|151
chr6_1	exon	88141918	88142082	88141918	ID=Msa0896930-mRNA-1:exon:14919;Parent=Msa0896930-mRNA-1
chr6_1	exon	88141165	88141254	88141165	ID=Msa0896930-mRNA-1:exon:14918;Parent=Msa0896930-mRNA-1
chr6_1	exon	88140635	88140835	88140635	ID=Msa0896930-mRNA-1:exon:14917;Parent=Msa0896930-mRNA-1
chr6_1	CDS	88141918	88142082	88141918	ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1
chr6_1	CDS	88141165	88141254	88141165	ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1
chr6_1	CDS	88140635	88140835	88140635	ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1

Gene Sequence

>Msa0896930

ATGGCACTATATGTTTTTCTTCTCCCAGGAATCGTTGTGATTCTTAGTTATGTGGCTATAATTGAAGCTACAATATTGTTAACTAATGATGATATTAACAATTCCCTCAATCGTAGTAGTTTCCCAGAAGGTTTTATCTTTGGAACAGCTTCATCAGCTTACCAGTATGAAGGTGCAGCAAATGTTGGTGGAAGAGGACCAAGTATATGGGATACTTTCACACATAATTTTCCAGGTCTTTTTCCTTTATCCATTCGTCGTAGATGTGGATCGCCGATGTTCGTCACGCTTCCGATGAAATATGTTGGTTTAGAGGGGAAGATTTGGAGGCCGAAGGCGATGATGTTATTGTTGAAAGCGCTTGTTGTTGCGGGTGTGGAAGGTGTTGTGGTGGAGATTTGGTGGGGTGGGGTTGAACTTGTTACGATGGCTTGCGTTTCATCAATATGGCACTGA

Protein sequence

>Msa0896930

MALYVFLLPGIVVILSYVAIIEATILLTNDDINNSLNRSSFPEGFIFGTASSAYQYEGAANVGGRGPSIWDTFTHNFPGLFPLSIRRRCGSPMFVTLPMKYVGLEGKIWRPKAMMLLLKALVVAGVEGVVVEIWWGGVELVTMACVSSIWH*