Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896930 | KEH26885.1 | 89.744 | 78 | 8 | 0 | 1 | 78 | 1 | 78 | 7.89e-40 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896930 | sp|P26204|BGLS_TRIRP | 60.000 | 75 | 22 | 2 | 11 | 78 | 4 | 77 | 2.96e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011450 | Msa0896930 | -0.834051 | 3.746629e-56 | -8.615850e-47 |
| Msa0047660 | Msa0896930 | -0.807335 | 5.314347e-50 | -8.615850e-47 |
| Msa0637590 | Msa0896930 | 0.811124 | 8.190509e-51 | -8.615850e-47 |
| Msa0658190 | Msa0896930 | 0.813956 | 1.968581e-51 | -8.615850e-47 |
| Msa0725580 | Msa0896930 | 0.810585 | 1.071493e-50 | -8.615850e-47 |
| Msa0753590 | Msa0896930 | -0.805600 | 1.234709e-49 | -8.615850e-47 |
| Msa0784780 | Msa0896930 | -0.816689 | 4.858756e-52 | -8.615850e-47 |
| Msa0126000 | Msa0896930 | -0.823096 | 1.665057e-53 | -8.615850e-47 |
| Msa0129620 | Msa0896930 | 0.816925 | 4.300961e-52 | -8.615850e-47 |
| Msa0164490 | Msa0896930 | 0.822849 | 1.900462e-53 | -8.615850e-47 |
| Msa0167570 | Msa0896930 | -0.810738 | 9.925789e-51 | -8.615850e-47 |
| Msa0225190 | Msa0896930 | -0.828511 | 8.634281e-55 | -8.615850e-47 |
| Msa0368210 | Msa0896930 | -0.807635 | 4.590405e-50 | -8.615850e-47 |
| Msa0415100 | Msa0896930 | 0.828638 | 8.045889e-55 | -8.615850e-47 |
| Msa0241750 | Msa0896930 | 0.809374 | 1.953054e-50 | -8.615850e-47 |
| Msa0262350 | Msa0896930 | -0.815572 | 8.630636e-52 | -8.615850e-47 |
| Msa0297030 | Msa0896930 | 0.832648 | 8.384860e-56 | -8.615850e-47 |
| Msa0345050 | Msa0896930 | 0.801706 | 7.934015e-49 | -8.615850e-47 |
| Msa0592650 | Msa0896930 | 0.805883 | 1.076758e-49 | -8.615850e-47 |
| Msa0845670 | Msa0896930 | 0.804079 | 2.565595e-49 | -8.615850e-47 |
| Msa0858250 | Msa0896930 | -0.819235 | 1.292177e-52 | -8.615850e-47 |
| Msa0882480 | Msa0896930 | -0.843208 | 1.614087e-58 | -8.615850e-47 |
| Msa0896930 | Msa0925940 | 0.823454 | 1.373029e-53 | -8.615850e-47 |
| Msa0896930 | Msa1007900 | 0.820712 | 5.934912e-53 | -8.615850e-47 |
| Msa0896930 | Msa1019420 | 0.802239 | 6.164579e-49 | -8.615850e-47 |
| Msa0896930 | Msa1035190 | 0.832783 | 7.760028e-56 | -8.615850e-47 |
| Msa0896930 | Msa1089880 | -0.802977 | 4.343128e-49 | -8.615850e-47 |
| Msa0896930 | Msa1091460 | -0.803091 | 4.113672e-49 | -8.615850e-47 |
| Msa0896930 | Msa1092310 | 0.850285 | 1.874891e-60 | -8.615850e-47 |
| Msa0896930 | Msa1114670 | 0.805336 | 1.402140e-49 | -8.615850e-47 |
| Msa0896930 | Msa1116090 | 0.804785 | 1.828021e-49 | -8.615850e-47 |
| Msa0896930 | Msa1116840 | 0.816142 | 6.440458e-52 | -8.615850e-47 |
| Msa0896930 | Msa1136760 | 0.826541 | 2.564242e-54 | -8.615850e-47 |
| Msa0896930 | Msa1159170 | 0.807168 | 5.767590e-50 | -8.615850e-47 |
| Msa0896930 | Msa1162520 | 0.806482 | 8.053344e-50 | -8.615850e-47 |
| Msa0896930 | Msa1184930 | 0.813738 | 2.198202e-51 | -8.615850e-47 |
| Msa0896930 | Msa1268390 | 0.801463 | 8.897075e-49 | -8.615850e-47 |
| Msa0896930 | Msa1362850 | 0.811192 | 7.916481e-51 | -8.615850e-47 |
| Msa0896930 | Msa1372810 | 0.835449 | 1.667389e-56 | -8.615850e-47 |
| Msa0896930 | Msa1398140 | 0.823875 | 1.094164e-53 | -8.615850e-47 |
| Msa0896930 | Msa1412430 | 0.815702 | 8.075217e-52 | -8.615850e-47 |
| Msa0896930 | Msa1427880 | 0.809895 | 1.508977e-50 | -8.615850e-47 |
| Msa0896930 | Msa1455200 | 0.801432 | 9.028112e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896930 | MtrunA17_Chr6g0482081 | 88.608 | 79 | 9 | 0 | 1 | 79 | 1 | 79 | 2.49e-43 | 149 |
| Msa0896930 | MtrunA17_Chr6g0482131 | 89.744 | 78 | 8 | 0 | 1 | 78 | 1 | 78 | 3.47e-43 | 149 |
| Msa0896930 | MtrunA17_Chr6g0482071 | 71.429 | 77 | 20 | 2 | 3 | 78 | 4 | 79 | 9.14e-29 | 110 |
| Msa0896930 | MtrunA17_Chr8g0388651 | 65.385 | 78 | 13 | 1 | 86 | 149 | 74 | 151 | 1.54e-23 | 95.5 |
| Msa0896930 | MtrunA17_Chr4g0033321 | 57.895 | 76 | 27 | 2 | 3 | 78 | 5 | 75 | 1.98e-22 | 92.0 |
| Msa0896930 | MtrunA17_Chr4g0033401 | 55.263 | 76 | 30 | 1 | 3 | 78 | 5 | 76 | 5.59e-21 | 88.2 |
| Msa0896930 | MtrunA17_Chr4g0033261 | 62.121 | 66 | 25 | 0 | 13 | 78 | 18 | 83 | 6.70e-21 | 87.8 |
| Msa0896930 | MtrunA17_Chr3g0087191 | 84.091 | 44 | 7 | 0 | 35 | 78 | 21 | 64 | 1.25e-20 | 82.8 |
| Msa0896930 | MtrunA17_Chr4g0033331 | 84.091 | 44 | 7 | 0 | 35 | 78 | 38 | 81 | 1.99e-20 | 86.7 |
| Msa0896930 | MtrunA17_Chr2g0329201 | 53.750 | 80 | 28 | 4 | 1 | 78 | 1 | 73 | 5.01e-20 | 85.5 |
| Msa0896930 | MtrunA17_Chr4g0010501 | 84.091 | 44 | 7 | 0 | 35 | 78 | 23 | 66 | 9.72e-20 | 84.3 |
| Msa0896930 | MtrunA17_Chr3g0088441 | 77.273 | 44 | 10 | 0 | 35 | 78 | 37 | 80 | 4.14e-19 | 82.8 |
| Msa0896930 | MtrunA17_Chr2g0329321 | 77.778 | 45 | 10 | 0 | 34 | 78 | 36 | 80 | 6.19e-19 | 82.0 |
| Msa0896930 | MtrunA17_Chr4g0033201 | 50.667 | 75 | 32 | 2 | 5 | 78 | 8 | 78 | 6.89e-19 | 82.0 |
| Msa0896930 | MtrunA17_Chr4g0033311 | 52.632 | 76 | 34 | 1 | 5 | 78 | 6 | 81 | 1.58e-18 | 81.3 |
| Msa0896930 | MtrunA17_Chr2g0329191 | 73.333 | 45 | 12 | 0 | 34 | 78 | 32 | 76 | 3.90e-18 | 80.1 |
| Msa0896930 | MtrunA17_Chr4g0033341 | 70.588 | 51 | 14 | 1 | 28 | 78 | 62 | 111 | 4.89e-18 | 79.7 |
| Msa0896930 | MtrunA17_Chr4g0033271 | 53.846 | 78 | 35 | 1 | 1 | 78 | 1 | 77 | 8.31e-18 | 79.0 |
| Msa0896930 | MtrunA17_Chr5g0430451 | 72.727 | 44 | 12 | 0 | 35 | 78 | 38 | 81 | 3.99e-17 | 77.0 |
| Msa0896930 | MtrunA17_Chr4g0033191 | 71.111 | 45 | 13 | 0 | 34 | 78 | 41 | 85 | 8.98e-17 | 76.3 |
| Msa0896930 | MtrunA17_Chr6g0482231 | 54.430 | 79 | 18 | 1 | 1 | 79 | 1 | 61 | 1.16e-16 | 75.5 |
| Msa0896930 | MtrunA17_Chr4g0033231 | 53.731 | 67 | 31 | 0 | 12 | 78 | 17 | 83 | 1.76e-16 | 75.1 |
| Msa0896930 | MtrunA17_Chr4g0043091 | 49.254 | 67 | 30 | 1 | 11 | 77 | 7 | 69 | 2.08e-16 | 75.1 |
| Msa0896930 | MtrunA17_Chr4g0006111 | 54.839 | 62 | 27 | 1 | 18 | 79 | 47 | 107 | 2.37e-15 | 72.0 |
| Msa0896930 | MtrunA17_Chr3g0087271 | 65.909 | 44 | 15 | 0 | 35 | 78 | 37 | 80 | 1.25e-14 | 70.1 |
| Msa0896930 | MtrunA17_Chr3g0087261 | 65.909 | 44 | 15 | 0 | 35 | 78 | 36 | 79 | 2.41e-14 | 68.9 |
| Msa0896930 | MtrunA17_Chr4g0006131 | 66.667 | 45 | 14 | 1 | 36 | 80 | 42 | 85 | 3.86e-14 | 68.6 |
| Msa0896930 | MtrunA17_Chr3g0090111 | 67.500 | 40 | 13 | 0 | 36 | 75 | 19 | 58 | 3.94e-14 | 68.6 |
| Msa0896930 | MtrunA17_Chr7g0242691 | 65.854 | 41 | 14 | 0 | 35 | 75 | 30 | 70 | 6.05e-14 | 67.8 |
| Msa0896930 | MtrunA17_Chr4g0042171 | 66.667 | 45 | 14 | 1 | 35 | 79 | 23 | 66 | 6.78e-14 | 67.8 |
| Msa0896930 | MtrunA17_Chr2g0301221 | 64.444 | 45 | 15 | 1 | 41 | 85 | 70 | 113 | 1.52e-13 | 63.2 |
| Msa0896930 | MtrunA17_Chr7g0242681 | 65.000 | 40 | 14 | 0 | 36 | 75 | 38 | 77 | 1.84e-12 | 63.5 |
| Msa0896930 | MtrunA17_Chr1g0195611 | 46.875 | 64 | 30 | 1 | 12 | 75 | 7 | 66 | 2.37e-12 | 63.5 |
| Msa0896930 | MtrunA17_Chr6g0482941 | 43.038 | 79 | 39 | 2 | 2 | 80 | 14 | 86 | 3.70e-12 | 62.8 |
| Msa0896930 | MtrunA17_Chr2g0317841 | 49.057 | 53 | 26 | 1 | 28 | 80 | 24 | 75 | 4.92e-12 | 62.4 |
| Msa0896930 | MtrunA17_Chr3g0090131 | 60.000 | 40 | 16 | 0 | 36 | 75 | 21 | 60 | 5.28e-12 | 62.4 |
| Msa0896930 | MtrunA17_Chr6g0482951 | 43.038 | 79 | 39 | 2 | 2 | 80 | 14 | 86 | 6.34e-12 | 62.0 |
| Msa0896930 | MtrunA17_Chr5g0428831 | 59.524 | 42 | 17 | 0 | 34 | 75 | 25 | 66 | 8.97e-12 | 61.6 |
| Msa0896930 | MtrunA17_Chr2g0317821 | 49.057 | 53 | 26 | 1 | 28 | 80 | 24 | 75 | 1.62e-11 | 60.8 |
| Msa0896930 | MtrunA17_Chr4g0006971 | 59.524 | 42 | 17 | 0 | 34 | 75 | 25 | 66 | 2.44e-11 | 60.5 |
| Msa0896930 | MtrunA17_Chr4g0074561 | 62.500 | 40 | 15 | 0 | 41 | 80 | 40 | 79 | 4.90e-11 | 59.7 |
| Msa0896930 | MtrunA17_Chr1g0195641 | 59.524 | 42 | 17 | 0 | 34 | 75 | 25 | 66 | 7.67e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896930 | AT3G60120.1 | 68.889 | 45 | 14 | 0 | 34 | 78 | 12 | 56 | 2.86e-16 | 75.1 |
| Msa0896930 | AT2G44480.1 | 70.213 | 47 | 14 | 0 | 32 | 78 | 31 | 77 | 3.00e-16 | 75.1 |
| Msa0896930 | AT2G44480.3 | 70.213 | 47 | 14 | 0 | 32 | 78 | 62 | 108 | 3.23e-16 | 74.7 |
| Msa0896930 | AT5G24550.1 | 74.419 | 43 | 11 | 0 | 36 | 78 | 32 | 74 | 6.81e-16 | 73.9 |
| Msa0896930 | AT2G44450.1 | 57.407 | 54 | 23 | 0 | 25 | 78 | 20 | 73 | 8.07e-16 | 73.6 |
| Msa0896930 | AT2G44480.4 | 70.213 | 47 | 14 | 0 | 32 | 78 | 62 | 108 | 1.07e-15 | 73.2 |
| Msa0896930 | AT1G26560.1 | 66.667 | 42 | 14 | 0 | 36 | 77 | 32 | 73 | 1.68e-15 | 72.8 |
| Msa0896930 | AT1G52400.3 | 46.667 | 75 | 39 | 1 | 5 | 78 | 7 | 81 | 2.48e-15 | 72.4 |
| Msa0896930 | AT1G52400.1 | 46.667 | 75 | 39 | 1 | 5 | 78 | 7 | 81 | 2.48e-15 | 72.4 |
| Msa0896930 | AT2G44490.1 | 65.909 | 44 | 15 | 0 | 35 | 78 | 13 | 56 | 2.53e-15 | 72.4 |
| Msa0896930 | AT1G52400.2 | 46.667 | 75 | 39 | 1 | 5 | 78 | 7 | 81 | 2.72e-15 | 72.0 |
| Msa0896930 | AT3G21370.1 | 63.636 | 44 | 16 | 0 | 35 | 78 | 32 | 75 | 2.89e-15 | 72.0 |
| Msa0896930 | AT5G54570.1 | 61.702 | 47 | 18 | 0 | 33 | 79 | 27 | 73 | 2.90e-15 | 72.0 |
| Msa0896930 | AT2G44460.1 | 44.872 | 78 | 36 | 3 | 1 | 78 | 1 | 71 | 4.47e-15 | 71.6 |
| Msa0896930 | AT5G42260.1 | 69.767 | 43 | 13 | 0 | 36 | 78 | 31 | 73 | 6.20e-15 | 71.2 |
| Msa0896930 | AT2G25630.1 | 47.059 | 68 | 30 | 1 | 17 | 78 | 5 | 72 | 1.34e-14 | 70.1 |
| Msa0896930 | AT5G44640.1 | 46.377 | 69 | 30 | 1 | 17 | 78 | 5 | 73 | 1.76e-14 | 69.7 |
| Msa0896930 | AT5G24540.1 | 72.093 | 43 | 12 | 0 | 36 | 78 | 32 | 74 | 2.40e-14 | 69.7 |
| Msa0896930 | AT2G44470.3 | 62.791 | 43 | 16 | 0 | 36 | 78 | 29 | 71 | 3.02e-14 | 69.3 |
| Msa0896930 | AT5G54570.3 | 61.702 | 47 | 18 | 0 | 33 | 79 | 27 | 73 | 3.08e-14 | 69.3 |
| Msa0896930 | AT3G60140.2 | 50.000 | 64 | 31 | 1 | 16 | 78 | 5 | 68 | 3.22e-14 | 68.9 |
| Msa0896930 | AT3G60140.1 | 50.000 | 64 | 31 | 1 | 16 | 78 | 5 | 68 | 3.41e-14 | 68.9 |
| Msa0896930 | AT3G60130.1 | 62.791 | 43 | 16 | 0 | 36 | 78 | 30 | 72 | 6.00e-14 | 68.6 |
| Msa0896930 | AT3G18070.1 | 68.182 | 44 | 13 | 1 | 36 | 79 | 30 | 72 | 6.96e-14 | 68.2 |
| Msa0896930 | AT1G75940.1 | 60.465 | 43 | 17 | 0 | 36 | 78 | 37 | 79 | 7.71e-14 | 68.2 |
| Msa0896930 | AT3G18070.3 | 68.182 | 44 | 13 | 1 | 36 | 79 | 30 | 72 | 8.26e-14 | 67.8 |
| Msa0896930 | AT3G03640.1 | 44.737 | 76 | 36 | 2 | 1 | 74 | 1 | 72 | 8.56e-14 | 67.8 |
| Msa0896930 | AT3G09260.1 | 56.522 | 46 | 20 | 0 | 33 | 78 | 32 | 77 | 1.03e-13 | 67.8 |
| Msa0896930 | AT5G24540.2 | 72.093 | 43 | 12 | 0 | 36 | 78 | 32 | 74 | 2.07e-13 | 66.6 |
| Msa0896930 | AT2G44470.2 | 62.791 | 43 | 16 | 0 | 36 | 78 | 29 | 71 | 2.58e-13 | 66.2 |
| Msa0896930 | AT2G44470.1 | 62.791 | 43 | 16 | 0 | 36 | 78 | 29 | 71 | 2.71e-13 | 66.6 |
| Msa0896930 | AT1G66280.1 | 39.506 | 81 | 43 | 2 | 1 | 78 | 1 | 78 | 3.26e-13 | 66.2 |
| Msa0896930 | AT3G18070.4 | 73.684 | 38 | 10 | 0 | 36 | 73 | 30 | 67 | 5.81e-13 | 65.5 |
| Msa0896930 | AT3G18070.5 | 73.684 | 38 | 10 | 0 | 36 | 73 | 30 | 67 | 7.71e-13 | 65.1 |
| Msa0896930 | AT3G18070.2 | 73.684 | 38 | 10 | 0 | 36 | 73 | 30 | 67 | 7.89e-13 | 65.1 |
| Msa0896930 | AT3G18080.1 | 63.636 | 44 | 15 | 1 | 36 | 79 | 39 | 81 | 1.04e-12 | 64.7 |
| Msa0896930 | AT4G27830.1 | 42.188 | 64 | 35 | 1 | 14 | 77 | 3 | 64 | 1.43e-12 | 64.3 |
| Msa0896930 | AT5G28510.1 | 52.174 | 46 | 22 | 0 | 33 | 78 | 36 | 81 | 1.85e-12 | 63.9 |
| Msa0896930 | AT3G62750.4 | 54.348 | 46 | 21 | 0 | 34 | 79 | 47 | 92 | 2.01e-12 | 63.9 |
| Msa0896930 | AT4G22100.1 | 64.103 | 39 | 14 | 0 | 37 | 75 | 23 | 61 | 2.12e-12 | 63.9 |
| Msa0896930 | AT1G45191.1 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.24e-12 | 63.9 |
| Msa0896930 | AT1G45191.2 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.27e-12 | 63.9 |
| Msa0896930 | AT1G45191.6 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.28e-12 | 63.9 |
| Msa0896930 | AT3G62750.2 | 54.348 | 46 | 21 | 0 | 34 | 79 | 47 | 92 | 2.54e-12 | 63.5 |
| Msa0896930 | AT1G45191.4 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.88e-12 | 63.5 |
| Msa0896930 | AT1G60090.1 | 54.545 | 44 | 20 | 0 | 33 | 76 | 21 | 64 | 5.56e-12 | 62.8 |
| Msa0896930 | AT3G62750.3 | 54.348 | 46 | 21 | 0 | 34 | 79 | 47 | 92 | 5.71e-12 | 62.8 |
| Msa0896930 | AT1G60090.2 | 54.545 | 44 | 20 | 0 | 33 | 76 | 21 | 64 | 5.93e-12 | 62.8 |
| Msa0896930 | AT3G62750.7 | 54.348 | 46 | 21 | 0 | 34 | 79 | 21 | 66 | 6.46e-12 | 62.4 |
| Msa0896930 | AT3G62750.8 | 54.348 | 46 | 21 | 0 | 34 | 79 | 21 | 66 | 6.46e-12 | 62.4 |
| Msa0896930 | AT3G62750.1 | 54.348 | 46 | 21 | 0 | 34 | 79 | 21 | 66 | 8.68e-12 | 62.0 |
| Msa0896930 | AT1G02850.2 | 61.538 | 39 | 15 | 0 | 37 | 75 | 27 | 65 | 2.01e-11 | 61.2 |
| Msa0896930 | AT1G02850.1 | 61.538 | 39 | 15 | 0 | 37 | 75 | 27 | 65 | 2.20e-11 | 60.8 |
| Msa0896930 | AT5G36890.1 | 64.103 | 39 | 14 | 0 | 37 | 75 | 17 | 55 | 2.20e-11 | 60.8 |
| Msa0896930 | AT5G36890.2 | 64.103 | 39 | 14 | 0 | 37 | 75 | 17 | 55 | 2.26e-11 | 60.8 |
| Msa0896930 | AT1G45191.5 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.31e-11 | 60.8 |
| Msa0896930 | AT1G02850.5 | 61.538 | 39 | 15 | 0 | 37 | 75 | 27 | 65 | 2.39e-11 | 60.8 |
| Msa0896930 | AT1G02850.4 | 61.538 | 39 | 15 | 0 | 37 | 75 | 27 | 65 | 2.39e-11 | 60.8 |
| Msa0896930 | AT1G45191.3 | 64.103 | 39 | 14 | 0 | 37 | 75 | 30 | 68 | 2.50e-11 | 60.8 |
| Msa0896930 | AT4G27820.1 | 51.111 | 45 | 22 | 0 | 33 | 77 | 20 | 64 | 3.11e-11 | 60.5 |
| Msa0896930 | AT1G02850.3 | 61.538 | 39 | 15 | 0 | 37 | 75 | 27 | 65 | 9.14e-11 | 59.3 |
| Msa0896930 | AT1G66270.2 | 51.111 | 45 | 22 | 0 | 34 | 78 | 34 | 78 | 9.82e-11 | 59.3 |
| Msa0896930 | AT1G66270.1 | 51.111 | 45 | 22 | 0 | 34 | 78 | 34 | 78 | 9.83e-11 | 59.3 |
Find 43 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGGAGATTTGGTGGGGT+GGG | 0.292846 | 6_1:-88140680 | Msa0896930:CDS |
| GTTCCAAAGATAAAACCTTC+TGG | 0.302143 | 6_1:+88141937 | None:intergenic |
| TTGGTTTAGAGGGGAAGATT+TGG | 0.314646 | 6_1:-88140764 | Msa0896930:CDS |
| TGGCTTGCGTTTCATCAATA+TGG | 0.322150 | 6_1:-88140641 | Msa0896930:CDS |
| GGTGGAGATTTGGTGGGGTG+GGG | 0.322711 | 6_1:-88140679 | Msa0896930:CDS |
| GTGGAAGAGGACCAAGTATA+TGG | 0.323224 | 6_1:-88141210 | Msa0896930:CDS |
| AAGGTGTTGTGGTGGAGATT+TGG | 0.332973 | 6_1:-88140689 | Msa0896930:CDS |
| GTGGTGGAGATTTGGTGGGG+TGG | 0.361157 | 6_1:-88140681 | Msa0896930:CDS |
| CTAAGAATCACAACGATTCC+TGG | 0.367802 | 6_1:+88142036 | None:intergenic |
| GATGAAATATGTTGGTTTAG+AGG | 0.380450 | 6_1:-88140775 | Msa0896930:CDS |
| AACAATAACATCATCGCCTT+CGG | 0.383549 | 6_1:+88140738 | None:intergenic |
| TTGAAAGCGCTTGTTGTTGC+GGG | 0.388049 | 6_1:-88140717 | Msa0896930:CDS |
| TTAATACAAACAATGGATAA+AGG | 0.388334 | 6_1:+88141154 | None:intergenic |
| GTGTTGTGGTGGAGATTTGG+TGG | 0.392986 | 6_1:-88140686 | Msa0896930:CDS |
| TTCCAAAGATAAAACCTTCT+GGG | 0.421602 | 6_1:+88141938 | None:intergenic |
| ATGAAATATGTTGGTTTAGA+GGG | 0.430643 | 6_1:-88140774 | Msa0896930:CDS |
| CGTTGTGATTCTTAGTTATG+TGG | 0.440160 | 6_1:-88142028 | Msa0896930:CDS |
| AACAGCTTCATCAGCTTACC+AGG | 0.455098 | 6_1:-88141917 | Msa0896930:intron |
| GCAGCAAATGTTGGTGGAAG+AGG | 0.456824 | 6_1:-88141223 | Msa0896930:CDS |
| TGTTGTGGTGGAGATTTGGT+GGG | 0.469843 | 6_1:-88140685 | Msa0896930:CDS |
| AGCGCTTGTTGTTGCGGGTG+TGG | 0.474039 | 6_1:-88140712 | Msa0896930:CDS |
| CTTGTTGTTGCGGGTGTGGA+AGG | 0.498810 | 6_1:-88140708 | Msa0896930:CDS |
| TGCGGGTGTGGAAGGTGTTG+TGG | 0.503992 | 6_1:-88140700 | Msa0896930:CDS |
| CTGGGAAACTACTACGATTG+AGG | 0.507712 | 6_1:+88141956 | None:intergenic |
| GTTTAGAGGGGAAGATTTGG+AGG | 0.510688 | 6_1:-88140761 | Msa0896930:CDS |
| TGGGAAACTACTACGATTGA+GGG | 0.515856 | 6_1:+88141957 | None:intergenic |
| TCTCCACAGCGTCGTAGATG+TGG | 0.529344 | 6_1:-88140822 | Msa0896930:intron |
| TAAGAATCACAACGATTCCT+GGG | 0.535402 | 6_1:+88142037 | None:intergenic |
| GTTGAAAGCGCTTGTTGTTG+CGG | 0.542179 | 6_1:-88140718 | Msa0896930:CDS |
| TGGAAGAGGACCAAGTATAT+GGG | 0.544729 | 6_1:-88141209 | Msa0896930:CDS |
| ATCGGAAGCGTGACGAACAT+CGG | 0.545203 | 6_1:+88140795 | None:intergenic |
| TTTCATCAATATGGCACTGA+TGG | 0.565296 | 6_1:-88140632 | None:intergenic |
| GTGAAAGTATCCCATATACT+TGG | 0.571422 | 6_1:+88141199 | None:intergenic |
| GTTGTGGTGGAGATTTGGTG+GGG | 0.574564 | 6_1:-88140684 | Msa0896930:CDS |
| TCTAAACCAACATATTTCAT+CGG | 0.578335 | 6_1:+88140777 | None:intergenic |
| ACGCTTCCGATGAAATATGT+TGG | 0.581759 | 6_1:-88140783 | Msa0896930:CDS |
| AATCGTAGTAGTTTCCCAGA+AGG | 0.583112 | 6_1:-88141952 | Msa0896930:CDS |
| GAAGGTGCAGCAAATGTTGG+TGG | 0.594191 | 6_1:-88141229 | Msa0896930:CDS |
| TGAAATATGTTGGTTTAGAG+GGG | 0.601872 | 6_1:-88140773 | Msa0896930:CDS |
| TGGGGTTGAACTTGTTACGA+TGG | 0.608700 | 6_1:-88140661 | Msa0896930:CDS |
| GGGGAAGATTTGGAGGCCGA+AGG | 0.616896 | 6_1:-88140754 | Msa0896930:CDS |
| TATGAAGGTGCAGCAAATGT+TGG | 0.622181 | 6_1:-88141232 | Msa0896930:CDS |
| GGGTGTGGAAGGTGTTGTGG+TGG | 0.643276 | 6_1:-88140697 | Msa0896930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTCATTTAAAGAAA+GGG | - | chr6_1:88141659-88141678 | Msa0896930:intron | 10.0% |
| !! | AATTATTTCATTTAAAGAAA+GGG | - | chr6_1:88141659-88141678 | Msa0896930:intron | 10.0% |
| !! | AAACTAATTAATACAAACAA+TGG | + | chr6_1:88141551-88141570 | None:intergenic | 15.0% |
| !! | GAATTATTTCATTTAAAGAA+AGG | - | chr6_1:88141658-88141677 | Msa0896930:intron | 15.0% |
| !! | AAAACATTTATTGAAATGTA+AGG | + | chr6_1:88141732-88141751 | None:intergenic | 15.0% |
| !! | AAACTAATTAATACAAACAA+TGG | + | chr6_1:88141551-88141570 | None:intergenic | 15.0% |
| !! | GAATTATTTCATTTAAAGAA+AGG | - | chr6_1:88141658-88141677 | Msa0896930:intron | 15.0% |
| !! | AAAACATTTATTGAAATGTA+AGG | + | chr6_1:88141732-88141751 | None:intergenic | 15.0% |
| !! | TATACAAAGTAGAAGAATAT+TGG | + | chr6_1:88140818-88140837 | None:intergenic | 20.0% |
| !! | AAATCGCTAAAAAAAAAAGA+GGG | + | chr6_1:88141064-88141083 | None:intergenic | 20.0% |
| !! | AAAATCGCTAAAAAAAAAAG+AGG | + | chr6_1:88141065-88141084 | None:intergenic | 20.0% |
| !! | TTCAAAATCATCATTAAAAG+AGG | - | chr6_1:88141114-88141133 | Msa0896930:intron | 20.0% |
| !!! | ATGAACAATTTTTAGTATGA+AGG | - | chr6_1:88141448-88141467 | Msa0896930:intron | 20.0% |
| !! | TTAATACAAACAATGGATAA+AGG | + | chr6_1:88141544-88141563 | None:intergenic | 20.0% |
| !! | TTGAAAGATGCATAAAATAA+AGG | - | chr6_1:88141595-88141614 | Msa0896930:intron | 20.0% |
| !! | TATACAAAGTAGAAGAATAT+TGG | + | chr6_1:88140818-88140837 | None:intergenic | 20.0% |
| !! | AAATCGCTAAAAAAAAAAGA+GGG | + | chr6_1:88141064-88141083 | None:intergenic | 20.0% |
| !! | AAAATCGCTAAAAAAAAAAG+AGG | + | chr6_1:88141065-88141084 | None:intergenic | 20.0% |
| !! | TTCAAAATCATCATTAAAAG+AGG | - | chr6_1:88141114-88141133 | Msa0896930:intron | 20.0% |
| !!! | ATGAACAATTTTTAGTATGA+AGG | - | chr6_1:88141448-88141467 | Msa0896930:intron | 20.0% |
| !! | TTAATACAAACAATGGATAA+AGG | + | chr6_1:88141544-88141563 | None:intergenic | 20.0% |
| !! | TTGAAAGATGCATAAAATAA+AGG | - | chr6_1:88141595-88141614 | Msa0896930:intron | 20.0% |
| ! | AGAAGAATATTGGAAATGAT+TGG | + | chr6_1:88140808-88140827 | None:intergenic | 25.0% |
| ! | ATCATTAAAAGAGGAGAAAT+TGG | - | chr6_1:88141123-88141142 | Msa0896930:intron | 25.0% |
| ! | TCATTAAAAGAGGAGAAATT+GGG | - | chr6_1:88141124-88141143 | Msa0896930:intron | 25.0% |
| ! | AATCACTAAAAAAGAAGAAG+AGG | - | chr6_1:88141164-88141183 | Msa0896930:intron | 25.0% |
| ! | ATCACTAAAAAAGAAGAAGA+GGG | - | chr6_1:88141165-88141184 | Msa0896930:CDS | 25.0% |
| ! | AAAATCGCTCAAAAAATAAG+AGG | - | chr6_1:88141287-88141306 | Msa0896930:intron | 25.0% |
| ! | AAATCGCTCAAAAAATAAGA+GGG | - | chr6_1:88141288-88141307 | Msa0896930:intron | 25.0% |
| !! | TTTTCGACTGAATTTGATTA+AGG | + | chr6_1:88141365-88141384 | None:intergenic | 25.0% |
| ! | AGATGCATAAAATAAAGGAA+TGG | - | chr6_1:88141600-88141619 | Msa0896930:intron | 25.0% |
| !! | GAAAGGGTTAAATATGTTTT+TGG | - | chr6_1:88141675-88141694 | Msa0896930:intron | 25.0% |
| ! | ACGTTAGAAATTTGACAATA+GGG | + | chr6_1:88141793-88141812 | None:intergenic | 25.0% |
| ! | TCTAAACCAACATATTTCAT+CGG | + | chr6_1:88141921-88141940 | None:intergenic | 25.0% |
| !!! | ATGAAATATGTTGGTTTAGA+GGG | - | chr6_1:88141921-88141940 | Msa0896930:CDS | 25.0% |
| ! | AGAAGAATATTGGAAATGAT+TGG | + | chr6_1:88140808-88140827 | None:intergenic | 25.0% |
| ! | ATCATTAAAAGAGGAGAAAT+TGG | - | chr6_1:88141123-88141142 | Msa0896930:intron | 25.0% |
| ! | TCATTAAAAGAGGAGAAATT+GGG | - | chr6_1:88141124-88141143 | Msa0896930:intron | 25.0% |
| ! | AATCACTAAAAAAGAAGAAG+AGG | - | chr6_1:88141164-88141183 | Msa0896930:intron | 25.0% |
| ! | ATCACTAAAAAAGAAGAAGA+GGG | - | chr6_1:88141165-88141184 | Msa0896930:CDS | 25.0% |
| ! | AAAATCGCTCAAAAAATAAG+AGG | - | chr6_1:88141287-88141306 | Msa0896930:intron | 25.0% |
| ! | AAATCGCTCAAAAAATAAGA+GGG | - | chr6_1:88141288-88141307 | Msa0896930:intron | 25.0% |
| !! | TTTTCGACTGAATTTGATTA+AGG | + | chr6_1:88141365-88141384 | None:intergenic | 25.0% |
| ! | AGATGCATAAAATAAAGGAA+TGG | - | chr6_1:88141600-88141619 | Msa0896930:intron | 25.0% |
| !! | GAAAGGGTTAAATATGTTTT+TGG | - | chr6_1:88141675-88141694 | Msa0896930:intron | 25.0% |
| ! | ACGTTAGAAATTTGACAATA+GGG | + | chr6_1:88141793-88141812 | None:intergenic | 25.0% |
| ! | TCTAAACCAACATATTTCAT+CGG | + | chr6_1:88141921-88141940 | None:intergenic | 25.0% |
| !!! | ATGAAATATGTTGGTTTAGA+GGG | - | chr6_1:88141921-88141940 | Msa0896930:CDS | 25.0% |
| TTCCAAAGATAAAACCTTCT+GGG | + | chr6_1:88140760-88140779 | None:intergenic | 30.0% | |
| ACAATTAACAAAAGATAGGG+GGG | + | chr6_1:88141028-88141047 | None:intergenic | 30.0% | |
| CACAATTAACAAAAGATAGG+GGG | + | chr6_1:88141029-88141048 | None:intergenic | 30.0% | |
| GCACAATTAACAAAAGATAG+GGG | + | chr6_1:88141030-88141049 | None:intergenic | 30.0% | |
| CGCACAATTAACAAAAGATA+GGG | + | chr6_1:88141031-88141050 | None:intergenic | 30.0% | |
| TCGCACAATTAACAAAAGAT+AGG | + | chr6_1:88141032-88141051 | None:intergenic | 30.0% | |
| AAACACAACTGACAAAAGAT+GGG | + | chr6_1:88141092-88141111 | None:intergenic | 30.0% | |
| AAAACACAACTGACAAAAGA+TGG | + | chr6_1:88141093-88141112 | None:intergenic | 30.0% | |
| TCACTAAAAAAGAAGAAGAG+GGG | - | chr6_1:88141166-88141185 | Msa0896930:CDS | 30.0% | |
| TGCACAATTGACAAAAAGAT+AGG | - | chr6_1:88141198-88141217 | Msa0896930:CDS | 30.0% | |
| GCACAATTGACAAAAAGATA+GGG | - | chr6_1:88141199-88141218 | Msa0896930:CDS | 30.0% | |
| CACAATTGACAAAAAGATAG+GGG | - | chr6_1:88141200-88141219 | Msa0896930:CDS | 30.0% | |
| ACAATTGACAAAAAGATAGG+GGG | - | chr6_1:88141201-88141220 | Msa0896930:CDS | 30.0% | |
| AAGTGCAATTAAACACAAGA+AGG | - | chr6_1:88141227-88141246 | Msa0896930:CDS | 30.0% | |
| AAGGTTCATCTAACTAGAAA+GGG | - | chr6_1:88141246-88141265 | Msa0896930:intron | 30.0% | |
| AATCGCTCAAAAAATAAGAG+GGG | - | chr6_1:88141289-88141308 | Msa0896930:intron | 30.0% | |
| ! | ACTTTCACACATAATTTTCC+AGG | - | chr6_1:88141511-88141530 | Msa0896930:intron | 30.0% |
| CACGTTAGAAATTTGACAAT+AGG | + | chr6_1:88141794-88141813 | None:intergenic | 30.0% | |
| !! | GATGAAATATGTTGGTTTAG+AGG | - | chr6_1:88141920-88141939 | Msa0896930:CDS | 30.0% |
| !! | TGAAATATGTTGGTTTAGAG+GGG | - | chr6_1:88141922-88141941 | Msa0896930:CDS | 30.0% |
| TTCCAAAGATAAAACCTTCT+GGG | + | chr6_1:88140760-88140779 | None:intergenic | 30.0% | |
| ACAATTAACAAAAGATAGGG+GGG | + | chr6_1:88141028-88141047 | None:intergenic | 30.0% | |
| CACAATTAACAAAAGATAGG+GGG | + | chr6_1:88141029-88141048 | None:intergenic | 30.0% | |
| GCACAATTAACAAAAGATAG+GGG | + | chr6_1:88141030-88141049 | None:intergenic | 30.0% | |
| CGCACAATTAACAAAAGATA+GGG | + | chr6_1:88141031-88141050 | None:intergenic | 30.0% | |
| TCGCACAATTAACAAAAGAT+AGG | + | chr6_1:88141032-88141051 | None:intergenic | 30.0% | |
| AAACACAACTGACAAAAGAT+GGG | + | chr6_1:88141092-88141111 | None:intergenic | 30.0% | |
| AAAACACAACTGACAAAAGA+TGG | + | chr6_1:88141093-88141112 | None:intergenic | 30.0% | |
| TCACTAAAAAAGAAGAAGAG+GGG | - | chr6_1:88141166-88141185 | Msa0896930:CDS | 30.0% | |
| TGCACAATTGACAAAAAGAT+AGG | - | chr6_1:88141198-88141217 | Msa0896930:CDS | 30.0% | |
| GCACAATTGACAAAAAGATA+GGG | - | chr6_1:88141199-88141218 | Msa0896930:CDS | 30.0% | |
| CACAATTGACAAAAAGATAG+GGG | - | chr6_1:88141200-88141219 | Msa0896930:CDS | 30.0% | |
| ACAATTGACAAAAAGATAGG+GGG | - | chr6_1:88141201-88141220 | Msa0896930:CDS | 30.0% | |
| AAGTGCAATTAAACACAAGA+AGG | - | chr6_1:88141227-88141246 | Msa0896930:CDS | 30.0% | |
| AAGGTTCATCTAACTAGAAA+GGG | - | chr6_1:88141246-88141265 | Msa0896930:intron | 30.0% | |
| AATCGCTCAAAAAATAAGAG+GGG | - | chr6_1:88141289-88141308 | Msa0896930:intron | 30.0% | |
| ! | ACTTTCACACATAATTTTCC+AGG | - | chr6_1:88141511-88141530 | Msa0896930:intron | 30.0% |
| CACGTTAGAAATTTGACAAT+AGG | + | chr6_1:88141794-88141813 | None:intergenic | 30.0% | |
| !! | GATGAAATATGTTGGTTTAG+AGG | - | chr6_1:88141920-88141939 | Msa0896930:CDS | 30.0% |
| !! | TGAAATATGTTGGTTTAGAG+GGG | - | chr6_1:88141922-88141941 | Msa0896930:CDS | 30.0% |
| ! | CTATATGTTTTTCTTCTCCC+AGG | - | chr6_1:88140641-88140660 | Msa0896930:CDS | 35.0% |
| TAAGAATCACAACGATTCCT+GGG | + | chr6_1:88140661-88140680 | None:intergenic | 35.0% | |
| CGTTGTGATTCTTAGTTATG+TGG | - | chr6_1:88140667-88140686 | Msa0896930:CDS | 35.0% | |
| !! | TTCCCAGAAGGTTTTATCTT+TGG | - | chr6_1:88140755-88140774 | Msa0896930:CDS | 35.0% |
| GTTCCAAAGATAAAACCTTC+TGG | + | chr6_1:88140761-88140780 | None:intergenic | 35.0% | |
| AATTAACAAAAGATAGGGGG+GGG | + | chr6_1:88141026-88141045 | None:intergenic | 35.0% | |
| CAATTAACAAAAGATAGGGG+GGG | + | chr6_1:88141027-88141046 | None:intergenic | 35.0% | |
| AACACAACTGACAAAAGATG+GGG | + | chr6_1:88141091-88141110 | None:intergenic | 35.0% | |
| CACTAAAAAAGAAGAAGAGG+GGG | - | chr6_1:88141167-88141186 | Msa0896930:CDS | 35.0% | |
| GAAGGTTCATCTAACTAGAA+AGG | - | chr6_1:88141245-88141264 | Msa0896930:intron | 35.0% | |
| TAGAAAGGGAGCAAAAAGAT+GGG | - | chr6_1:88141260-88141279 | Msa0896930:intron | 35.0% | |
| ATCGCTCAAAAAATAAGAGG+GGG | - | chr6_1:88141290-88141309 | Msa0896930:intron | 35.0% | |
| ! | CCTATCTTTTGCTAATTGTG+CGG | + | chr6_1:88141323-88141342 | None:intergenic | 35.0% |
| CGCACAATTAGCAAAAGATA+GGG | - | chr6_1:88141321-88141340 | Msa0896930:intron | 35.0% | |
| ACAATTAGCAAAAGATAGGG+AGG | - | chr6_1:88141324-88141343 | Msa0896930:intron | 35.0% | |
| !! | GTGAAAGTATCCCATATACT+TGG | + | chr6_1:88141499-88141518 | None:intergenic | 35.0% |
| ATGGATAAAGGAAAAAGACC+TGG | + | chr6_1:88141532-88141551 | None:intergenic | 35.0% | |
| ! | AGGAATGGTACTTATCGATT+AGG | - | chr6_1:88141615-88141634 | Msa0896930:intron | 35.0% |
| ! | ATGGTACTTATCGATTAGGT+TGG | - | chr6_1:88141619-88141638 | Msa0896930:intron | 35.0% |
| TCAAAATCGTGCAAAACGTA+GGG | + | chr6_1:88141702-88141721 | None:intergenic | 35.0% | |
| AACAATAACATCATCGCCTT+CGG | + | chr6_1:88141960-88141979 | None:intergenic | 35.0% | |
| ! | CTATATGTTTTTCTTCTCCC+AGG | - | chr6_1:88140641-88140660 | Msa0896930:CDS | 35.0% |
| TAAGAATCACAACGATTCCT+GGG | + | chr6_1:88140661-88140680 | None:intergenic | 35.0% | |
| CGTTGTGATTCTTAGTTATG+TGG | - | chr6_1:88140667-88140686 | Msa0896930:CDS | 35.0% | |
| !! | TTCCCAGAAGGTTTTATCTT+TGG | - | chr6_1:88140755-88140774 | Msa0896930:CDS | 35.0% |
| GTTCCAAAGATAAAACCTTC+TGG | + | chr6_1:88140761-88140780 | None:intergenic | 35.0% | |
| AATTAACAAAAGATAGGGGG+GGG | + | chr6_1:88141026-88141045 | None:intergenic | 35.0% | |
| CAATTAACAAAAGATAGGGG+GGG | + | chr6_1:88141027-88141046 | None:intergenic | 35.0% | |
| AACACAACTGACAAAAGATG+GGG | + | chr6_1:88141091-88141110 | None:intergenic | 35.0% | |
| CACTAAAAAAGAAGAAGAGG+GGG | - | chr6_1:88141167-88141186 | Msa0896930:CDS | 35.0% | |
| GAAGGTTCATCTAACTAGAA+AGG | - | chr6_1:88141245-88141264 | Msa0896930:intron | 35.0% | |
| TAGAAAGGGAGCAAAAAGAT+GGG | - | chr6_1:88141260-88141279 | Msa0896930:intron | 35.0% | |
| ATCGCTCAAAAAATAAGAGG+GGG | - | chr6_1:88141290-88141309 | Msa0896930:intron | 35.0% | |
| ! | CCTATCTTTTGCTAATTGTG+CGG | + | chr6_1:88141323-88141342 | None:intergenic | 35.0% |
| CGCACAATTAGCAAAAGATA+GGG | - | chr6_1:88141321-88141340 | Msa0896930:intron | 35.0% | |
| ACAATTAGCAAAAGATAGGG+AGG | - | chr6_1:88141324-88141343 | Msa0896930:intron | 35.0% | |
| !! | GTGAAAGTATCCCATATACT+TGG | + | chr6_1:88141499-88141518 | None:intergenic | 35.0% |
| ATGGATAAAGGAAAAAGACC+TGG | + | chr6_1:88141532-88141551 | None:intergenic | 35.0% | |
| ! | AGGAATGGTACTTATCGATT+AGG | - | chr6_1:88141615-88141634 | Msa0896930:intron | 35.0% |
| ! | ATGGTACTTATCGATTAGGT+TGG | - | chr6_1:88141619-88141638 | Msa0896930:intron | 35.0% |
| TCAAAATCGTGCAAAACGTA+GGG | + | chr6_1:88141702-88141721 | None:intergenic | 35.0% | |
| AACAATAACATCATCGCCTT+CGG | + | chr6_1:88141960-88141979 | None:intergenic | 35.0% | |
| CTAAGAATCACAACGATTCC+TGG | + | chr6_1:88140662-88140681 | None:intergenic | 40.0% | |
| TGGGAAACTACTACGATTGA+GGG | + | chr6_1:88140741-88140760 | None:intergenic | 40.0% | |
| AATCGTAGTAGTTTCCCAGA+AGG | - | chr6_1:88140743-88140762 | Msa0896930:CDS | 40.0% | |
| ! | TTGGAAATGATTGGAGTACC+TGG | + | chr6_1:88140799-88140818 | None:intergenic | 40.0% |
| AGGAGAAATTGGGCAAAAGA+TGG | - | chr6_1:88141134-88141153 | Msa0896930:intron | 40.0% | |
| GGAGAAATTGGGCAAAAGAT+GGG | - | chr6_1:88141135-88141154 | Msa0896930:intron | 40.0% | |
| GAGAAATTGGGCAAAAGATG+GGG | - | chr6_1:88141136-88141155 | Msa0896930:intron | 40.0% | |
| CTAGAAAGGGAGCAAAAAGA+TGG | - | chr6_1:88141259-88141278 | Msa0896930:intron | 40.0% | |
| AGAAAGGGAGCAAAAAGATG+GGG | - | chr6_1:88141261-88141280 | Msa0896930:intron | 40.0% | |
| CCGCACAATTAGCAAAAGAT+AGG | - | chr6_1:88141320-88141339 | Msa0896930:intron | 40.0% | |
| ! | TATGAAGGTGCAGCAAATGT+TGG | - | chr6_1:88141463-88141482 | Msa0896930:intron | 40.0% |
| TGGAAGAGGACCAAGTATAT+GGG | - | chr6_1:88141486-88141505 | Msa0896930:intron | 40.0% | |
| CTCAAAATCGTGCAAAACGT+AGG | + | chr6_1:88141703-88141722 | None:intergenic | 40.0% | |
| GCTAATGGGGGAAAAATGTA+GGG | + | chr6_1:88141761-88141780 | None:intergenic | 40.0% | |
| TAGGGACTATTCACGCTAAT+GGG | + | chr6_1:88141775-88141794 | None:intergenic | 40.0% | |
| ATAGGGACTATTCACGCTAA+TGG | + | chr6_1:88141776-88141795 | None:intergenic | 40.0% | |
| TTCTAACGTGATGCTGATGT+TGG | - | chr6_1:88141804-88141823 | Msa0896930:intron | 40.0% | |
| !! | TGAAGTTATCCGCTGTTTTC+TGG | + | chr6_1:88141843-88141862 | None:intergenic | 40.0% |
| ACGCTTCCGATGAAATATGT+TGG | - | chr6_1:88141912-88141931 | Msa0896930:intron | 40.0% | |
| TTGGTTTAGAGGGGAAGATT+TGG | - | chr6_1:88141931-88141950 | Msa0896930:CDS | 40.0% | |
| ! | TGGCTTGCGTTTCATCAATA+TGG | - | chr6_1:88142054-88142073 | Msa0896930:CDS | 40.0% |
| CTAAGAATCACAACGATTCC+TGG | + | chr6_1:88140662-88140681 | None:intergenic | 40.0% | |
| TGGGAAACTACTACGATTGA+GGG | + | chr6_1:88140741-88140760 | None:intergenic | 40.0% | |
| AATCGTAGTAGTTTCCCAGA+AGG | - | chr6_1:88140743-88140762 | Msa0896930:CDS | 40.0% | |
| ! | TTGGAAATGATTGGAGTACC+TGG | + | chr6_1:88140799-88140818 | None:intergenic | 40.0% |
| AGGAGAAATTGGGCAAAAGA+TGG | - | chr6_1:88141134-88141153 | Msa0896930:intron | 40.0% | |
| GGAGAAATTGGGCAAAAGAT+GGG | - | chr6_1:88141135-88141154 | Msa0896930:intron | 40.0% | |
| GAGAAATTGGGCAAAAGATG+GGG | - | chr6_1:88141136-88141155 | Msa0896930:intron | 40.0% | |
| CTAGAAAGGGAGCAAAAAGA+TGG | - | chr6_1:88141259-88141278 | Msa0896930:intron | 40.0% | |
| AGAAAGGGAGCAAAAAGATG+GGG | - | chr6_1:88141261-88141280 | Msa0896930:intron | 40.0% | |
| CCGCACAATTAGCAAAAGAT+AGG | - | chr6_1:88141320-88141339 | Msa0896930:intron | 40.0% | |
| ! | TATGAAGGTGCAGCAAATGT+TGG | - | chr6_1:88141463-88141482 | Msa0896930:intron | 40.0% |
| TGGAAGAGGACCAAGTATAT+GGG | - | chr6_1:88141486-88141505 | Msa0896930:intron | 40.0% | |
| CTCAAAATCGTGCAAAACGT+AGG | + | chr6_1:88141703-88141722 | None:intergenic | 40.0% | |
| GCTAATGGGGGAAAAATGTA+GGG | + | chr6_1:88141761-88141780 | None:intergenic | 40.0% | |
| TAGGGACTATTCACGCTAAT+GGG | + | chr6_1:88141775-88141794 | None:intergenic | 40.0% | |
| ATAGGGACTATTCACGCTAA+TGG | + | chr6_1:88141776-88141795 | None:intergenic | 40.0% | |
| TTCTAACGTGATGCTGATGT+TGG | - | chr6_1:88141804-88141823 | Msa0896930:intron | 40.0% | |
| !! | TGAAGTTATCCGCTGTTTTC+TGG | + | chr6_1:88141843-88141862 | None:intergenic | 40.0% |
| ACGCTTCCGATGAAATATGT+TGG | - | chr6_1:88141912-88141931 | Msa0896930:intron | 40.0% | |
| TTGGTTTAGAGGGGAAGATT+TGG | - | chr6_1:88141931-88141950 | Msa0896930:CDS | 40.0% | |
| ! | TGGCTTGCGTTTCATCAATA+TGG | - | chr6_1:88142054-88142073 | Msa0896930:CDS | 40.0% |
| CTGGGAAACTACTACGATTG+AGG | + | chr6_1:88140742-88140761 | None:intergenic | 45.0% | |
| AACAGCTTCATCAGCTTACC+AGG | - | chr6_1:88140778-88140797 | Msa0896930:CDS | 45.0% | |
| GTGGAAGAGGACCAAGTATA+TGG | - | chr6_1:88141485-88141504 | Msa0896930:intron | 45.0% | |
| CGCTAATGGGGGAAAAATGT+AGG | + | chr6_1:88141762-88141781 | None:intergenic | 45.0% | |
| AGGGACTATTCACGCTAATG+GGG | + | chr6_1:88141774-88141793 | None:intergenic | 45.0% | |
| TAACGTGATGCTGATGTTGG+CGG | - | chr6_1:88141807-88141826 | Msa0896930:intron | 45.0% | |
| TCAATCTCGCCAGAAAACAG+CGG | - | chr6_1:88141831-88141850 | Msa0896930:intron | 45.0% | |
| GTTTAGAGGGGAAGATTTGG+AGG | - | chr6_1:88141934-88141953 | Msa0896930:CDS | 45.0% | |
| !! | GTTGAAAGCGCTTGTTGTTG+CGG | - | chr6_1:88141977-88141996 | Msa0896930:CDS | 45.0% |
| !! | TTGAAAGCGCTTGTTGTTGC+GGG | - | chr6_1:88141978-88141997 | Msa0896930:CDS | 45.0% |
| !! | AAGGTGTTGTGGTGGAGATT+TGG | - | chr6_1:88142006-88142025 | Msa0896930:CDS | 45.0% |
| ! | TGTTGTGGTGGAGATTTGGT+GGG | - | chr6_1:88142010-88142029 | Msa0896930:CDS | 45.0% |
| !! | TGGGGTTGAACTTGTTACGA+TGG | - | chr6_1:88142034-88142053 | Msa0896930:CDS | 45.0% |
| CTGGGAAACTACTACGATTG+AGG | + | chr6_1:88140742-88140761 | None:intergenic | 45.0% | |
| AACAGCTTCATCAGCTTACC+AGG | - | chr6_1:88140778-88140797 | Msa0896930:CDS | 45.0% | |
| GTGGAAGAGGACCAAGTATA+TGG | - | chr6_1:88141485-88141504 | Msa0896930:intron | 45.0% | |
| CGCTAATGGGGGAAAAATGT+AGG | + | chr6_1:88141762-88141781 | None:intergenic | 45.0% | |
| AGGGACTATTCACGCTAATG+GGG | + | chr6_1:88141774-88141793 | None:intergenic | 45.0% | |
| TAACGTGATGCTGATGTTGG+CGG | - | chr6_1:88141807-88141826 | Msa0896930:intron | 45.0% | |
| TCAATCTCGCCAGAAAACAG+CGG | - | chr6_1:88141831-88141850 | Msa0896930:intron | 45.0% | |
| GTTTAGAGGGGAAGATTTGG+AGG | - | chr6_1:88141934-88141953 | Msa0896930:CDS | 45.0% | |
| !! | GTTGAAAGCGCTTGTTGTTG+CGG | - | chr6_1:88141977-88141996 | Msa0896930:CDS | 45.0% |
| !! | TTGAAAGCGCTTGTTGTTGC+GGG | - | chr6_1:88141978-88141997 | Msa0896930:CDS | 45.0% |
| !! | AAGGTGTTGTGGTGGAGATT+TGG | - | chr6_1:88142006-88142025 | Msa0896930:CDS | 45.0% |
| ! | TGTTGTGGTGGAGATTTGGT+GGG | - | chr6_1:88142010-88142029 | Msa0896930:CDS | 45.0% |
| !! | TGGGGTTGAACTTGTTACGA+TGG | - | chr6_1:88142034-88142053 | Msa0896930:CDS | 45.0% |
| ! | GAAGGTGCAGCAAATGTTGG+TGG | - | chr6_1:88141466-88141485 | Msa0896930:intron | 50.0% |
| ! | GCAGCAAATGTTGGTGGAAG+AGG | - | chr6_1:88141472-88141491 | Msa0896930:intron | 50.0% |
| GGGACTATTCACGCTAATGG+GGG | + | chr6_1:88141773-88141792 | None:intergenic | 50.0% | |
| ! | ATCGGAAGCGTGACGAACAT+CGG | + | chr6_1:88141903-88141922 | None:intergenic | 50.0% |
| ! | GTGTTGTGGTGGAGATTTGG+TGG | - | chr6_1:88142009-88142028 | Msa0896930:CDS | 50.0% |
| !! | GTTGTGGTGGAGATTTGGTG+GGG | - | chr6_1:88142011-88142030 | Msa0896930:CDS | 50.0% |
| ! | GAAGGTGCAGCAAATGTTGG+TGG | - | chr6_1:88141466-88141485 | Msa0896930:intron | 50.0% |
| ! | GCAGCAAATGTTGGTGGAAG+AGG | - | chr6_1:88141472-88141491 | Msa0896930:intron | 50.0% |
| GGGACTATTCACGCTAATGG+GGG | + | chr6_1:88141773-88141792 | None:intergenic | 50.0% | |
| ! | ATCGGAAGCGTGACGAACAT+CGG | + | chr6_1:88141903-88141922 | None:intergenic | 50.0% |
| ! | GTGTTGTGGTGGAGATTTGG+TGG | - | chr6_1:88142009-88142028 | Msa0896930:CDS | 50.0% |
| !! | GTTGTGGTGGAGATTTGGTG+GGG | - | chr6_1:88142011-88142030 | Msa0896930:CDS | 50.0% |
| GACGCTGTGGAGAAAGATCG+TGG | + | chr6_1:88141866-88141885 | None:intergenic | 55.0% | |
| TCTCCACAGCGTCGTAGATG+TGG | - | chr6_1:88141873-88141892 | Msa0896930:intron | 55.0% | |
| GATCCACATCTACGACGCTG+TGG | + | chr6_1:88141879-88141898 | None:intergenic | 55.0% | |
| !! | CTTGTTGTTGCGGGTGTGGA+AGG | - | chr6_1:88141987-88142006 | Msa0896930:CDS | 55.0% |
| !! | TGGTGGAGATTTGGTGGGGT+GGG | - | chr6_1:88142015-88142034 | Msa0896930:CDS | 55.0% |
| GACGCTGTGGAGAAAGATCG+TGG | + | chr6_1:88141866-88141885 | None:intergenic | 55.0% | |
| TCTCCACAGCGTCGTAGATG+TGG | - | chr6_1:88141873-88141892 | Msa0896930:intron | 55.0% | |
| GATCCACATCTACGACGCTG+TGG | + | chr6_1:88141879-88141898 | None:intergenic | 55.0% | |
| !! | CTTGTTGTTGCGGGTGTGGA+AGG | - | chr6_1:88141987-88142006 | Msa0896930:CDS | 55.0% |
| !! | TGGTGGAGATTTGGTGGGGT+GGG | - | chr6_1:88142015-88142034 | Msa0896930:CDS | 55.0% |
| GGGGAAGATTTGGAGGCCGA+AGG | - | chr6_1:88141941-88141960 | Msa0896930:CDS | 60.0% | |
| !! | AGCGCTTGTTGTTGCGGGTG+TGG | - | chr6_1:88141983-88142002 | Msa0896930:CDS | 60.0% |
| !! | TGCGGGTGTGGAAGGTGTTG+TGG | - | chr6_1:88141995-88142014 | Msa0896930:CDS | 60.0% |
| !! | GGGTGTGGAAGGTGTTGTGG+TGG | - | chr6_1:88141998-88142017 | Msa0896930:CDS | 60.0% |
| !! | GTGGTGGAGATTTGGTGGGG+TGG | - | chr6_1:88142014-88142033 | Msa0896930:CDS | 60.0% |
| !! | GGTGGAGATTTGGTGGGGTG+GGG | - | chr6_1:88142016-88142035 | Msa0896930:CDS | 60.0% |
| GGGGAAGATTTGGAGGCCGA+AGG | - | chr6_1:88141941-88141960 | Msa0896930:CDS | 60.0% | |
| !! | AGCGCTTGTTGTTGCGGGTG+TGG | - | chr6_1:88141983-88142002 | Msa0896930:CDS | 60.0% |
| !! | TGCGGGTGTGGAAGGTGTTG+TGG | - | chr6_1:88141995-88142014 | Msa0896930:CDS | 60.0% |
| !! | GGGTGTGGAAGGTGTTGTGG+TGG | - | chr6_1:88141998-88142017 | Msa0896930:CDS | 60.0% |
| !! | GTGGTGGAGATTTGGTGGGG+TGG | - | chr6_1:88142014-88142033 | Msa0896930:CDS | 60.0% |
| !! | GGTGGAGATTTGGTGGGGTG+GGG | - | chr6_1:88142016-88142035 | Msa0896930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 88140635 | 88142082 | 88140635 | ID=Msa0896930;Name=Msa0896930 |
| chr6_1 | mRNA | 88140635 | 88142082 | 88140635 | ID=Msa0896930-mRNA-1;Parent=Msa0896930;Name=Msa0896930-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|151 |
| chr6_1 | exon | 88141918 | 88142082 | 88141918 | ID=Msa0896930-mRNA-1:exon:14919;Parent=Msa0896930-mRNA-1 |
| chr6_1 | exon | 88141165 | 88141254 | 88141165 | ID=Msa0896930-mRNA-1:exon:14918;Parent=Msa0896930-mRNA-1 |
| chr6_1 | exon | 88140635 | 88140835 | 88140635 | ID=Msa0896930-mRNA-1:exon:14917;Parent=Msa0896930-mRNA-1 |
| chr6_1 | CDS | 88141918 | 88142082 | 88141918 | ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1 |
| chr6_1 | CDS | 88141165 | 88141254 | 88141165 | ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1 |
| chr6_1 | CDS | 88140635 | 88140835 | 88140635 | ID=Msa0896930-mRNA-1:cds;Parent=Msa0896930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
