AlfalfaGEDB | Msa0704780

M. sativa cultivar zhongmu-4 / Msa0704780

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704780	XP_039685180.1	90.452	199	13	2	1	198	1	194	3.86e-124	358

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704780	sp\|Q9SJ02\|STEP2_ARATH	56.566	198	74	5	1	192	1	192	6.24e-62	194

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704780	A0A396GPG0	90.452	199	13	2	1	198	1	194	1.84e-124	358

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0704780	-0.816661	4.929273e-52	-8.615850e-47
Msa0034700	Msa0704780	0.808433	3.104962e-50	-8.615850e-47
Msa0040090	Msa0704780	0.847617	1.032614e-59	-8.615850e-47
Msa0041780	Msa0704780	0.817749	2.805962e-52	-8.615850e-47
Msa0044530	Msa0704780	0.844715	6.366316e-59	-8.615850e-47
Msa0044780	Msa0704780	0.853594	2.154746e-61	-8.615850e-47
Msa0045620	Msa0704780	-0.854671	1.054116e-61	-8.615850e-47
Msa0050320	Msa0704780	0.831934	1.259330e-55	-8.615850e-47
Msa0050530	Msa0704780	-0.805608	1.229509e-49	-8.615850e-47
Msa0063190	Msa0704780	-0.812267	4.619365e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704780	MtrunA17_Chr8g0382991	90.452	199	13	2	1	198	1	194	3.55e-128	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0704780	AT2G21970.1	56.566	198	74	5	1	192	1	192	6.34e-63	194

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Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCAGTTTGTTTGTG+AGG	0.521674	4_4:-77282716	None:intergenic
AAAGTTTGAGACTTGAGAAG+TGG	0.510886	4_4:-77282692	None:intergenic
AAGAATCAGTTTGTTTGTGA+GGG	0.497960	4_4:-77282715	None:intergenic
AATGAATGAACGAACGTTGA+AGG	0.532387	4_4:-77282658	None:intergenic
AATGGATATTGCAGGGATAA+CGG	0.508574	4_4:+77283281	Msa0704780:CDS
ACAATCTATGAACATGCTCA+AGG	0.561369	4_4:-77283639	None:intergenic
ACGGAAAATTGAACCTGACC+AGG	0.573450	4_4:-77282818	None:intergenic
ACTTGAGAAGTGGTAGTTGT+AGG	0.364804	4_4:-77282682	None:intergenic
AGCAGTTGCGGAGAAGAAAT+TGG	0.350239	4_4:-77282584	None:intergenic
AGCGACGGTGACGGTGGAGT+TGG	0.587633	4_4:+77283233	Msa0704780:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTAGAACTCTCGATATATT+CGG	-	chr4_4:77283017-77283036	None:intergenic	30.0%
ATCAATTAGCGAATCAATGA+AGG	-	chr4_4:77283412-77283431	None:intergenic	30.0%
CTAATTGATCAAATCGTTGA+CGG	+	chr4_4:77283423-77283442	Msa0704780:CDS	30.0%
CATGTTCATAGATTGTAAGA+TGG	+	chr4_4:77283646-77283665	Msa0704780:three_prime_UTR	30.0%
CTTAGAACTCTCGATATATT+CGG	-	chr4_4:77283017-77283036	None:intergenic	30.0%
ATCAATTAGCGAATCAATGA+AGG	-	chr4_4:77283412-77283431	None:intergenic	30.0%
CTAATTGATCAAATCGTTGA+CGG	+	chr4_4:77283423-77283442	Msa0704780:CDS	30.0%
CATGTTCATAGATTGTAAGA+TGG	+	chr4_4:77283646-77283665	Msa0704780:three_prime_UTR	30.0%
AGGTATCAGACAAAACTATG+TGG	-	chr4_4:77282549-77282568	None:intergenic	35.0%
TAATAACGAGTAAGCAGTTG+CGG	-	chr4_4:77282599-77282618	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	77282540	77283795	77282540	ID=Msa0704780;Name=Msa0704780
chr4_4	mRNA	77282540	77283795	77282540	ID=Msa0704780-mRNA-1;Parent=Msa0704780;Name=Msa0704780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=200\|1\|1\|1\|1\|1\|2\|316\|198
chr4_4	exon	77282540	77283078	77282540	ID=Msa0704780-mRNA-1:exon:24409;Parent=Msa0704780-mRNA-1
chr4_4	exon	77283222	77283795	77283222	ID=Msa0704780-mRNA-1:exon:24410;Parent=Msa0704780-mRNA-1
chr4_4	five_prime_UTR	77282540	77282739	77282540	ID=Msa0704780-mRNA-1:five_prime_utr;Parent=Msa0704780-mRNA-1
chr4_4	CDS	77282740	77283078	77282740	ID=Msa0704780-mRNA-1:cds;Parent=Msa0704780-mRNA-1
chr4_4	CDS	77283222	77283479	77283222	ID=Msa0704780-mRNA-1:cds;Parent=Msa0704780-mRNA-1
chr4_4	three_prime_UTR	77283480	77283795	77283480	ID=Msa0704780-mRNA-1:three_prime_utr;Parent=Msa0704780-mRNA-1

Gene Sequence

>Msa0704780

ATGGCATCTGCAGCGCGTGTGACTAACTGCGAGCTCCGGCCACCAAAAGTATCATCGTCTCGTTCCCGCCCCAGAAAACCTGGTCAGGTTCAATTTTCCGTCACCAAACCCAAACCGACTGAACCAGAAGGCGCGAACACAAACATCGTTCTACAACCGCGGCTATGCACTCTCAGATCATACGGTTCCGATCCAGTCGGCGCCATAATCAAGACCCGTAAAGAAGAAGACATGCAAGTTACCGATGACGTGTCCTCCTTCTTCGCCACTCTTTCCGAATATATCGAGAGTTCTAAGAAAAGCCAGGATTTCGAAATCATCTCCGGCCGCCTCGCCATGATGGTGTTTGCAGCGACGGTGACGGTGGAGTTGGTGACGGGGAATTCGGTGTTCAGGAAAATGGATATTGCAGGGATAACGGAGGCGGGTGGGATTTGTTTGGGTGCGGTTACTATGGCGGCAATGTTTGCTTGGTTCTCAAGTGCTCGTACCAGAGTGGATCGAATCTTCACAGTCAGCTACAACTCCTTCATTGATTCGCTAATTGATCAAATCGTTGACGGTTTGTTCTATGATGATAGCGAGGGTGAACTCTGA

Protein sequence

>Msa0704780

MASAARVTNCELRPPKVSSSRSRPRKPGQVQFSVTKPKPTEPEGANTNIVLQPRLCTLRSYGSDPVGAIIKTRKEEDMQVTDDVSSFFATLSEYIESSKKSQDFEIISGRLAMMVFAATVTVELVTGNSVFRKMDIAGITEAGGICLGAVTMAAMFAWFSSARTRVDRIFTVSYNSFIDSLIDQIVDGLFYDDSEGEL*