Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324900 | XP_003595440.1 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324900 | sp|Q9SBJ1|PDK_ARATH | 78.649 | 370 | 74 | 2 | 1 | 369 | 1 | 366 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324900 | G7ISS5 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0049670 | Msa0324900 | 0.809153 | 2.178245e-50 | -8.615850e-47 |
| Msa0056220 | Msa0324900 | 0.806231 | 9.093722e-50 | -8.615850e-47 |
| Msa0228360 | Msa0324900 | 0.810880 | 9.252051e-51 | -8.615850e-47 |
| Msa0285930 | Msa0324900 | 0.887850 | 9.926827e-73 | -8.615850e-47 |
| Msa0324900 | Msa0388790 | 0.800864 | 1.179682e-48 | -8.615850e-47 |
| Msa0324900 | Msa0577960 | 0.809089 | 2.247667e-50 | -8.615850e-47 |
| Msa0324900 | Msa0625550 | 0.809589 | 1.755826e-50 | -8.615850e-47 |
| Msa0324900 | Msa0707870 | 0.802369 | 5.796587e-49 | -8.615850e-47 |
| Msa0324900 | Msa0812230 | 0.803419 | 3.518492e-49 | -8.615850e-47 |
| Msa0324900 | Msa1011140 | 0.813630 | 2.322149e-51 | -8.615850e-47 |
| Msa0324900 | Msa1029190 | 0.803173 | 3.955282e-49 | -8.615850e-47 |
| Msa0324900 | Msa1071460 | 0.803974 | 2.698235e-49 | -8.615850e-47 |
| Msa0324900 | Msa1154750 | 0.805873 | 1.081804e-49 | -8.615850e-47 |
| Msa0324900 | Msa1160480 | 0.806575 | 7.696916e-50 | -8.615850e-47 |
| Msa0324900 | Msa1203210 | 0.807959 | 3.916956e-50 | -8.615850e-47 |
| Msa0324900 | Msa1211120 | 0.801820 | 7.516654e-49 | -8.615850e-47 |
| Msa0324900 | Msa1219530 | 0.824536 | 7.654633e-54 | -8.615850e-47 |
| Msa0324900 | Msa1262740 | 0.802608 | 5.176054e-49 | -8.615850e-47 |
| Msa0324900 | Msa1333220 | 0.821560 | 3.784378e-53 | -8.615850e-47 |
| Msa0324900 | Msa1374210 | 0.810700 | 1.011736e-50 | -8.615850e-47 |
| Msa0324900 | Msa1381720 | 0.806937 | 6.452088e-50 | -8.615850e-47 |
| Msa0324900 | Msa1393600 | 0.808027 | 3.788517e-50 | -8.615850e-47 |
| Msa0324900 | Msa1405190 | 0.808085 | 3.682059e-50 | -8.615850e-47 |
| Msa0324900 | Msa1409360 | 0.824717 | 6.937528e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324900 | MtrunA17_Chr2g0302461 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| Msa0324900 | MtrunA17_Chr7g0223211 | 85.753 | 365 | 51 | 1 | 6 | 369 | 3 | 367 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0324900 | AT3G06483.1 | 78.649 | 370 | 74 | 2 | 1 | 369 | 1 | 366 | 0.0 | 607 |
Find 96 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAACAAAGGTTACCTTTA+TGG | 0.101003 | 2_4:+30864047 | None:intergenic |
| CGTCTATATGCTCGGTATTT+TGG | 0.198289 | 2_4:-30863790 | Msa0324900:CDS |
| ATCAGCAACTATTATTCTTA+TGG | 0.199738 | 2_4:+30864086 | None:intergenic |
| AAATCTTGATTAATAATCTT+TGG | 0.200792 | 2_4:+30864711 | None:intergenic |
| TTAAGATACATGATGGATTT+TGG | 0.201092 | 2_4:-30866371 | Msa0324900:CDS |
| TACTTCTTCTATCAAGCTTT+TGG | 0.235373 | 2_4:+30866430 | None:intergenic |
| GTCCTTGTTTAGAATGAATA+AGG | 0.251737 | 2_4:-30862203 | Msa0324900:three_prime_UTR |
| AGAGCCATTACCTTGAAATT+AGG | 0.265928 | 2_4:-30862403 | Msa0324900:exon |
| TCCAGCTCACTTGCATCTTA+TGG | 0.267701 | 2_4:-30864181 | Msa0324900:CDS |
| GCAGAAATCAACAAATTCTT+TGG | 0.269784 | 2_4:+30866335 | None:intergenic |
| ATCTTTCGCAGACCACTTCT+TGG | 0.293648 | 2_4:+30863922 | None:intergenic |
| AATAAGGAAATTGATGTATA+TGG | 0.310097 | 2_4:-30862187 | Msa0324900:three_prime_UTR |
| ATAATCTCTATGGAAAATTA+TGG | 0.310911 | 2_4:-30863754 | Msa0324900:intron |
| TCAGCAACTATTATTCTTAT+GGG | 0.330890 | 2_4:+30864087 | None:intergenic |
| ACGACATGAGGAGGAGGATT+TGG | 0.339129 | 2_4:+30864488 | None:intergenic |
| AATCTTGATTAATAATCTTT+GGG | 0.339663 | 2_4:+30864712 | None:intergenic |
| TCTATATGCTCTCGTCAATA+TGG | 0.352011 | 2_4:-30864401 | Msa0324900:CDS |
| AGATGAAAAGATTGAGACTT+TGG | 0.358251 | 2_4:+30866690 | None:intergenic |
| TTCTGCACAGTTTCTTCATA+AGG | 0.369524 | 2_4:-30866318 | Msa0324900:CDS |
| TGATCTTCAAATAATCTCTA+TGG | 0.370398 | 2_4:-30863764 | Msa0324900:CDS |
| ATCGGAATCCGAATGCTTAT+AGG | 0.370497 | 2_4:-30864645 | Msa0324900:intron |
| CACTGAGTGGTTCATTGGAT+TGG | 0.371772 | 2_4:+30862132 | None:intergenic |
| AGTTACACTGAGTGGTTCAT+TGG | 0.382164 | 2_4:+30862127 | None:intergenic |
| TATCTACATCTGTCACGTTT+GGG | 0.396902 | 2_4:-30862435 | Msa0324900:CDS |
| AATTACATGTTCAAATTCCT+TGG | 0.401850 | 2_4:-30866519 | Msa0324900:five_prime_UTR |
| TATGGGAGGTGGATCTTTGT+CGG | 0.407094 | 2_4:+30864104 | None:intergenic |
| TTTGATTGTAGGTTAGAGAT+TGG | 0.407781 | 2_4:-30864893 | Msa0324900:intron |
| TTATCTACATCTGTCACGTT+TGG | 0.410428 | 2_4:-30862436 | Msa0324900:CDS |
| TTGGATGAGCATGCCGATCT+TGG | 0.411149 | 2_4:-30863865 | Msa0324900:CDS |
| GCCCCTGACGTACATATATA+CGG | 0.411708 | 2_4:-30864374 | Msa0324900:CDS |
| ATCAACAAATTCTTTGGAGT+TGG | 0.419384 | 2_4:+30866341 | None:intergenic |
| AATTCACATTTCCCACTTTG+CGG | 0.419847 | 2_4:-30866718 | Msa0324900:five_prime_UTR |
| AATAGTTGCTGATGGATTAG+AGG | 0.424802 | 2_4:-30864076 | Msa0324900:CDS |
| GATAGAAGAAGTACACAAAT+GGG | 0.426839 | 2_4:-30866420 | Msa0324900:CDS |
| TGGGGTTGTTTCAAACAAAC+TGG | 0.432934 | 2_4:-30866401 | Msa0324900:CDS |
| ACAATGGCTGGATATGGATA+TGG | 0.434648 | 2_4:-30863826 | Msa0324900:CDS |
| CATGTTCTTGATCTCAGAAA+AGG | 0.444152 | 2_4:+30864842 | None:intergenic |
| AATGGCTTTCTTTGCAGCCA+TGG | 0.449337 | 2_4:+30866463 | None:intergenic |
| ACAACCTAATTTCAAGGTAA+TGG | 0.450463 | 2_4:+30862399 | None:intergenic |
| ATTAGAGGATGTTACCATAA+AGG | 0.451488 | 2_4:-30864061 | Msa0324900:intron |
| TGATAGAAGAAGTACACAAA+TGG | 0.452397 | 2_4:-30866421 | Msa0324900:CDS |
| AATGTGACAATGGCTGGATA+TGG | 0.453217 | 2_4:-30863832 | Msa0324900:CDS |
| CAAGAACATGAATGATGAAA+AGG | 0.453697 | 2_4:-30864829 | Msa0324900:CDS |
| AGCTCTTCTAGCAATTCTAA+TGG | 0.455069 | 2_4:+30866289 | None:intergenic |
| GCATCTTATGGTATTTGAGT+TGG | 0.457285 | 2_4:-30864169 | Msa0324900:CDS |
| TCGCCGTATATATGTACGTC+AGG | 0.457500 | 2_4:+30864371 | None:intergenic |
| GGCATTGTAGATTTCGGATG+AGG | 0.457844 | 2_4:-30863956 | Msa0324900:intron |
| TAGATTTCGGATGAGGGAGG+TGG | 0.462557 | 2_4:-30863949 | Msa0324900:CDS |
| TTCTCTCTCTTTCTTCAACA+TGG | 0.465713 | 2_4:-30866592 | Msa0324900:five_prime_UTR |
| CGAGCATATAGACGACTAAT+CGG | 0.467037 | 2_4:+30863799 | None:intergenic |
| AAGTAAACAACCTAATTTCA+AGG | 0.476695 | 2_4:+30862393 | None:intergenic |
| ACTATTATTCTTATGGGAGG+TGG | 0.487057 | 2_4:+30864093 | None:intergenic |
| GAAGAGCTGTTGAGCTTGAA+AGG | 0.489678 | 2_4:-30866274 | Msa0324900:CDS |
| ACTCACGGAAAAGTAAAATC+AGG | 0.492192 | 2_4:+30864347 | None:intergenic |
| GGCGATAATGTGACAATGGC+TGG | 0.493309 | 2_4:-30863838 | Msa0324900:CDS |
| AAGGGTACCTTCAAAACAGC+TGG | 0.500713 | 2_4:+30866227 | None:intergenic |
| ACCATAAGATGCAAGTGAGC+TGG | 0.502479 | 2_4:+30864180 | None:intergenic |
| TGAACACCTAAGGCCATTGT+AGG | 0.507319 | 2_4:+30864756 | None:intergenic |
| GGAACTAACCTATAAGCATT+CGG | 0.507924 | 2_4:+30864637 | None:intergenic |
| GTGGTACCTACAATGGCCTT+AGG | 0.513887 | 2_4:-30864762 | Msa0324900:CDS |
| TTTCAACTGCTGAACACCTA+AGG | 0.517968 | 2_4:+30864746 | None:intergenic |
| GCATTCCTTGCTACCTCCAC+CGG | 0.529975 | 2_4:+30864440 | None:intergenic |
| TTTCAGGACCACATAGAGAT+GGG | 0.530298 | 2_4:+30862161 | None:intergenic |
| GTAGGTTAGAGATTGGTACT+TGG | 0.540755 | 2_4:-30864886 | Msa0324900:intron |
| TATAGAGCGTGCATCGTCAA+CGG | 0.545656 | 2_4:+30864418 | None:intergenic |
| TATTGCAGTAAGAGAATGAA+AGG | 0.550689 | 2_4:-30862075 | Msa0324900:three_prime_UTR |
| TACAAGAATGTCTCCGGTGG+AGG | 0.553472 | 2_4:-30864453 | Msa0324900:CDS |
| TATACATACAAGAATGTCTC+CGG | 0.557684 | 2_4:-30864459 | Msa0324900:CDS |
| GAGCATGCCGATCTTGGAGT+TGG | 0.560266 | 2_4:-30863859 | Msa0324900:CDS |
| ATTATCGCCAACTCCAAGAT+CGG | 0.563220 | 2_4:+30863852 | None:intergenic |
| TAGTACTGCTAGAAATCCAT+TGG | 0.565118 | 2_4:-30863884 | Msa0324900:CDS |
| TTCCTTATTCATTCTAAACA+AGG | 0.567885 | 2_4:+30862201 | None:intergenic |
| ATAAGAATAATAGTTGCTGA+TGG | 0.570973 | 2_4:-30864084 | Msa0324900:CDS |
| GCATTGTAGATTTCGGATGA+GGG | 0.576459 | 2_4:-30863955 | Msa0324900:intron |
| TGTGAGTTTAAGATACATGA+TGG | 0.580924 | 2_4:-30866378 | Msa0324900:CDS |
| AGATCGGCATGCTCATCCAA+TGG | 0.584157 | 2_4:+30863868 | None:intergenic |
| CGATTAGTCGTCTATATGCT+CGG | 0.587059 | 2_4:-30863798 | Msa0324900:CDS |
| TGTCTCCGGTGGAGGTAGCA+AGG | 0.587639 | 2_4:-30864445 | Msa0324900:CDS |
| CGCCGTATATATGTACGTCA+GGG | 0.587762 | 2_4:+30864372 | None:intergenic |
| CATTAAAGAAAGAACGTGGT+AGG | 0.599986 | 2_4:-30862335 | Msa0324900:three_prime_UTR |
| GCAACTATTATTCTTATGGG+AGG | 0.606741 | 2_4:+30864090 | None:intergenic |
| CAACAATGTGGTACCTACAA+TGG | 0.612377 | 2_4:-30864769 | Msa0324900:CDS |
| AATCCTCCTCCTCATGTCGT+AGG | 0.616981 | 2_4:-30864485 | Msa0324900:CDS |
| TTGTAGATTTCGGATGAGGG+AGG | 0.626371 | 2_4:-30863952 | Msa0324900:intron |
| TAACCTACGACATGAGGAGG+AGG | 0.635529 | 2_4:+30864482 | None:intergenic |
| TATGGAGACCCATCTCTATG+TGG | 0.636629 | 2_4:-30862169 | Msa0324900:three_prime_UTR |
| TGTATATAACCTACGACATG+AGG | 0.637267 | 2_4:+30864476 | None:intergenic |
| GGAGGTGGAATACCAAGAAG+TGG | 0.641112 | 2_4:-30863934 | Msa0324900:CDS |
| CAGAAAAGGATCTAATATCG+CGG | 0.669135 | 2_4:+30864856 | None:intergenic |
| ACATACAAGAATGTCTCCGG+TGG | 0.674423 | 2_4:-30864456 | Msa0324900:CDS |
| ATATAACCTACGACATGAGG+AGG | 0.678302 | 2_4:+30864479 | None:intergenic |
| GCCGTATATATGTACGTCAG+GGG | 0.698307 | 2_4:+30864373 | None:intergenic |
| ATAGAAGAAGTACACAAATG+GGG | 0.700759 | 2_4:-30866419 | Msa0324900:CDS |
| AGTTGGCGATAATGTGACAA+TGG | 0.719596 | 2_4:-30863842 | Msa0324900:CDS |
| AAAAGTGAGACACAACAATG+TGG | 0.724994 | 2_4:-30864781 | Msa0324900:CDS |
| GCAACATTAAAGAAAGAACG+TGG | 0.730419 | 2_4:-30862339 | Msa0324900:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATGGAATGAAATAA+TGG | - | chr2_4:30862660-30862679 | Msa0324900:intron | 15.0% |
| !!! | TTTTTATGGAATGAAATAAT+GGG | - | chr2_4:30862661-30862680 | Msa0324900:intron | 15.0% |
| !!! | TATTAATAAAAAAGTGGTTT+TGG | - | chr2_4:30863159-30863178 | Msa0324900:intron | 15.0% |
| !!! | ATTAATAAAAAAGTGGTTTT+GGG | - | chr2_4:30863160-30863179 | Msa0324900:intron | 15.0% |
| !!! | TTCTAGTTTATTAATATTTG+TGG | - | chr2_4:30863225-30863244 | Msa0324900:intron | 15.0% |
| !! | AATCTTGATTAATAATCTTT+GGG | + | chr2_4:30864150-30864169 | None:intergenic | 15.0% |
| !! | AAATCTTGATTAATAATCTT+TGG | + | chr2_4:30864151-30864170 | None:intergenic | 15.0% |
| !!! | AATAGATATGTTTTTACAAT+AGG | - | chr2_4:30864650-30864669 | Msa0324900:CDS | 15.0% |
| !!! | TATTTGTTAATTGAATTTGT+AGG | - | chr2_4:30865459-30865478 | Msa0324900:intron | 15.0% |
| !!! | ATTTGTTAATTGAATTTGTA+GGG | - | chr2_4:30865460-30865479 | Msa0324900:intron | 15.0% |
| !! | ATACAAAAAAGTTAAAAACT+GGG | - | chr2_4:30865579-30865598 | Msa0324900:intron | 15.0% |
| !! | ATTTATATTTAGTATAATGG+TGG | + | chr2_4:30865706-30865725 | None:intergenic | 15.0% |
| !! | GCTATTTATATTTAGTATAA+TGG | + | chr2_4:30865709-30865728 | None:intergenic | 15.0% |
| !!! | AAAAACATTTTTCTTAACCA+TGG | - | chr2_4:30862379-30862398 | Msa0324900:three_prime_UTR | 20.0% |
| !! | ATTCCATAAAAAAACCAAAA+GGG | + | chr2_4:30862653-30862672 | None:intergenic | 20.0% |
| !!! | TTTCTGAAATTATTAGTAGT+TGG | - | chr2_4:30862948-30862967 | Msa0324900:intron | 20.0% |
| !!! | TTTTGTTTGTTTTAGTGTTT+TGG | - | chr2_4:30863094-30863113 | Msa0324900:intron | 20.0% |
| !!! | TTAATAAAAAAGTGGTTTTG+GGG | - | chr2_4:30863161-30863180 | Msa0324900:intron | 20.0% |
| !! | ATAATGTAGATTATTGCTTT+AGG | - | chr2_4:30863201-30863220 | Msa0324900:intron | 20.0% |
| !! | TTAAATTCAGTGATTCATTA+TGG | - | chr2_4:30863561-30863580 | Msa0324900:intron | 20.0% |
| !!! | TCATACACAGTTTTAAATAA+AGG | + | chr2_4:30863827-30863846 | None:intergenic | 20.0% |
| !!! | TTTTTTCGTTTTAAATCTGT+TGG | - | chr2_4:30864270-30864289 | Msa0324900:intron | 20.0% |
| !! | AACATAAACAAATGAATTCA+TGG | + | chr2_4:30864554-30864573 | None:intergenic | 20.0% |
| !!! | ATTTGTTTATGTTTTATGCT+AGG | - | chr2_4:30864561-30864580 | Msa0324900:intron | 20.0% |
| !! | ATAATCTCTATGGAAAATTA+TGG | - | chr2_4:30865105-30865124 | Msa0324900:intron | 20.0% |
| !! | TTAACACAAATTAACCTTAT+TGG | - | chr2_4:30865331-30865350 | Msa0324900:intron | 20.0% |
| !! | TTTGTTAATTGAATTTGTAG+GGG | - | chr2_4:30865461-30865480 | Msa0324900:intron | 20.0% |
| !! | GATACAAAAAAGTTAAAAAC+TGG | - | chr2_4:30865578-30865597 | Msa0324900:intron | 20.0% |
| !! | TTATATAAGCTATAAGAGTA+TGG | + | chr2_4:30866157-30866176 | None:intergenic | 20.0% |
| !! | AGGAAAATCACATTAAAAAA+AGG | - | chr2_4:30866544-30866563 | Msa0324900:five_prime_UTR | 20.0% |
| !!! | CATAAGATTGTTTTTAGTAA+AGG | - | chr2_4:30866634-30866653 | Msa0324900:five_prime_UTR | 20.0% |
| !! | AATAAGGAAATTGATGTATA+TGG | - | chr2_4:30866672-30866691 | Msa0324900:five_prime_UTR | 20.0% |
| ! | AATTACATGTTCAAATTCCT+TGG | - | chr2_4:30862340-30862359 | Msa0324900:three_prime_UTR | 25.0% |
| !!! | TTTTTTCTTTCTTCTAACCA+AGG | + | chr2_4:30862360-30862379 | None:intergenic | 25.0% |
| !!! | TTAAGATACATGATGGATTT+TGG | - | chr2_4:30862488-30862507 | Msa0324900:intron | 25.0% |
| ! | CATTCCATAAAAAAACCAAA+AGG | + | chr2_4:30862654-30862673 | None:intergenic | 25.0% |
| !! | GTTTATGTTGAAATGAGTTT+TGG | - | chr2_4:30862751-30862770 | Msa0324900:intron | 25.0% |
| !!! | TTGTTTTAGTGTTTTGGTTT+TGG | - | chr2_4:30863100-30863119 | Msa0324900:intron | 25.0% |
| ! | TGTTAAACCATATTTGCAAT+TGG | - | chr2_4:30863263-30863282 | Msa0324900:intron | 25.0% |
| !!! | TAACATTCAAGTTTTGATGT+TGG | + | chr2_4:30863393-30863412 | None:intergenic | 25.0% |
| ! | AGAGTTGAAACTATATTATC+CGG | - | chr2_4:30863472-30863491 | Msa0324900:intron | 25.0% |
| !!! | GACTATTATTTTTGATTGGT+TGG | + | chr2_4:30863503-30863522 | None:intergenic | 25.0% |
| ! | AATCAAAAATAATAGTCCTC+CGG | - | chr2_4:30863506-30863525 | Msa0324900:intron | 25.0% |
| !! | AGCAGGAAATTTCAATTTTT+CGG | + | chr2_4:30863540-30863559 | None:intergenic | 25.0% |
| !!! | TGCTACATTTTTTTGATTGT+AGG | - | chr2_4:30863955-30863974 | Msa0324900:intron | 25.0% |
| ! | AATGAAAAACACGCATAATA+AGG | + | chr2_4:30864314-30864333 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTGTTGGATTC+AGG | - | chr2_4:30864326-30864345 | Msa0324900:intron | 25.0% |
| !!! | TTTCATTTTTGTTGGATTCA+GGG | - | chr2_4:30864327-30864346 | Msa0324900:intron | 25.0% |
| !! | AGTAAAAAGTATGTAACTCA+CGG | + | chr2_4:30864530-30864549 | None:intergenic | 25.0% |
| ! | TCAGCAACTATTATTCTTAT+GGG | + | chr2_4:30864775-30864794 | None:intergenic | 25.0% |
| ! | ATCAGCAACTATTATTCTTA+TGG | + | chr2_4:30864776-30864795 | None:intergenic | 25.0% |
| ! | ATAAGAATAATAGTTGCTGA+TGG | - | chr2_4:30864775-30864794 | Msa0324900:CDS | 25.0% |
| ! | TGATCTTCAAATAATCTCTA+TGG | - | chr2_4:30865095-30865114 | Msa0324900:intron | 25.0% |
| !! | TTGATAACAATGGATACAAA+AGG | + | chr2_4:30865169-30865188 | None:intergenic | 25.0% |
| ! | TACAAACAGTTGTCAAATAA+CGG | + | chr2_4:30865777-30865796 | None:intergenic | 25.0% |
| ! | AATCCAAACAAGACTTATAT+TGG | + | chr2_4:30866026-30866045 | None:intergenic | 25.0% |
| ! | AAGTATTCTGATATGATCTT+TGG | - | chr2_4:30866379-30866398 | Msa0324900:CDS | 25.0% |
| ! | AAGTAAACAACCTAATTTCA+AGG | + | chr2_4:30866469-30866488 | None:intergenic | 25.0% |
| ! | TTCCTTATTCATTCTAAACA+AGG | + | chr2_4:30866661-30866680 | None:intergenic | 25.0% |
| !!! | ATTGGATTGGATTTTTTTTC+AGG | + | chr2_4:30866717-30866736 | None:intergenic | 25.0% |
| AGATGAAAAGATTGAGACTT+TGG | + | chr2_4:30862172-30862191 | None:intergenic | 30.0% | |
| ! | TACTTCTTCTATCAAGCTTT+TGG | + | chr2_4:30862432-30862451 | None:intergenic | 30.0% |
| ! | TGATAGAAGAAGTACACAAA+TGG | - | chr2_4:30862438-30862457 | Msa0324900:CDS | 30.0% |
| ! | GATAGAAGAAGTACACAAAT+GGG | - | chr2_4:30862439-30862458 | Msa0324900:CDS | 30.0% |
| ! | ATAGAAGAAGTACACAAATG+GGG | - | chr2_4:30862440-30862459 | Msa0324900:CDS | 30.0% |
| ! | TGTGAGTTTAAGATACATGA+TGG | - | chr2_4:30862481-30862500 | Msa0324900:intron | 30.0% |
| !! | ATCAACAAATTCTTTGGAGT+TGG | + | chr2_4:30862521-30862540 | None:intergenic | 30.0% |
| GCAGAAATCAACAAATTCTT+TGG | + | chr2_4:30862527-30862546 | None:intergenic | 30.0% | |
| !!! | GTACCCTTTTGGTTTTTTTA+TGG | - | chr2_4:30862647-30862666 | Msa0324900:intron | 30.0% |
| TTTGCTAATTAGTGTGTTTG+AGG | - | chr2_4:30862815-30862834 | Msa0324900:intron | 30.0% | |
| !!! | GGAGGACTATTATTTTTGAT+TGG | + | chr2_4:30863507-30863526 | None:intergenic | 30.0% |
| !! | CAATTTTTCGGAACAAAAAC+CGG | + | chr2_4:30863528-30863547 | None:intergenic | 30.0% |
| GAATCACTGAATTTAATAGC+AGG | + | chr2_4:30863557-30863576 | None:intergenic | 30.0% | |
| ! | ATCATAAACCTCTCATTTTC+AGG | + | chr2_4:30863640-30863659 | None:intergenic | 30.0% |
| AAATGAGAGGTTTATGATCA+CGG | - | chr2_4:30863642-30863661 | Msa0324900:intron | 30.0% | |
| !! | AGGTTTTAACATGTGCTATA+TGG | - | chr2_4:30863864-30863883 | Msa0324900:CDS | 30.0% |
| !!! | ATATGGTATTTTAGCGACAT+AGG | - | chr2_4:30863881-30863900 | Msa0324900:CDS | 30.0% |
| TTTGATTGTAGGTTAGAGAT+TGG | - | chr2_4:30863966-30863985 | Msa0324900:intron | 30.0% | |
| CAAGAACATGAATGATGAAA+AGG | - | chr2_4:30864030-30864049 | Msa0324900:intron | 30.0% | |
| !! | ATTGTTGTGTCTCACTTTTA+TGG | + | chr2_4:30864077-30864096 | None:intergenic | 30.0% |
| TTGACATGTAAAAACGATCT+AGG | + | chr2_4:30864192-30864211 | None:intergenic | 30.0% | |
| ! | CGTTTTTACATGTCAAGAAT+CGG | - | chr2_4:30864196-30864215 | Msa0324900:intron | 30.0% |
| GCAGAAAATTAAAACAGTCA+AGG | + | chr2_4:30864246-30864265 | None:intergenic | 30.0% | |
| AAACACGCATAATAAGGTAA+CGG | + | chr2_4:30864308-30864327 | None:intergenic | 30.0% | |
| !! | TGCGTGTTTTTCATTTTTGT+TGG | - | chr2_4:30864319-30864338 | Msa0324900:intron | 30.0% |
| TATACATACAAGAATGTCTC+CGG | - | chr2_4:30864400-30864419 | Msa0324900:CDS | 30.0% | |
| ! | TTTATGTTTTATGCTAGGAG+TGG | - | chr2_4:30864566-30864585 | Msa0324900:intron | 30.0% |
| ATTAGAGGATGTTACCATAA+AGG | - | chr2_4:30864798-30864817 | Msa0324900:CDS | 30.0% | |
| GTTAACAAAGGTTACCTTTA+TGG | + | chr2_4:30864815-30864834 | None:intergenic | 30.0% | |
| TGCATCATAATGGTTAACAA+AGG | + | chr2_4:30864827-30864846 | None:intergenic | 30.0% | |
| TGTTAACCATTATGATGCAT+CGG | - | chr2_4:30864828-30864847 | Msa0324900:CDS | 30.0% | |
| TGATTCTTTGTTAAAGCAGT+TGG | - | chr2_4:30864873-30864892 | Msa0324900:CDS | 30.0% | |
| CTAATTGGCATTGTAGATTT+CGG | - | chr2_4:30864897-30864916 | Msa0324900:intron | 30.0% | |
| ! | TGTTAGTGGTTTTTCCAATA+AGG | + | chr2_4:30865348-30865367 | None:intergenic | 30.0% |
| TTAATTGAATTTGTAGGGGT+GGG | - | chr2_4:30865465-30865484 | Msa0324900:intron | 30.0% | |
| TATTCCTGTAGAAGTTCAAA+AGG | + | chr2_4:30865890-30865909 | None:intergenic | 30.0% | |
| !! | TTGCCAATATAAGTCTTGTT+TGG | - | chr2_4:30866020-30866039 | Msa0324900:intron | 30.0% |
| TATAAGCACTTTATGCAAAC+AGG | - | chr2_4:30866253-30866272 | Msa0324900:CDS | 30.0% | |
| ATAAGCACTTTATGCAAACA+GGG | - | chr2_4:30866254-30866273 | Msa0324900:CDS | 30.0% | |
| ! | ATGATCTTTGGTTTCTTTGT+AGG | - | chr2_4:30866391-30866410 | Msa0324900:CDS | 30.0% |
| ! | TGATCTTTGGTTTCTTTGTA+GGG | - | chr2_4:30866392-30866411 | Msa0324900:CDS | 30.0% |
| ACAACCTAATTTCAAGGTAA+TGG | + | chr2_4:30866463-30866482 | None:intergenic | 30.0% | |
| TTAAAAAAAGGACCATGTGT+TGG | - | chr2_4:30866556-30866575 | Msa0324900:five_prime_UTR | 30.0% | |
| ATGAAAAAAATGCCAACACA+TGG | + | chr2_4:30866571-30866590 | None:intergenic | 30.0% | |
| ! | GTCCTTGTTTAGAATGAATA+AGG | - | chr2_4:30866656-30866675 | Msa0324900:five_prime_UTR | 30.0% |
| TATTGCAGTAAGAGAATGAA+AGG | - | chr2_4:30866784-30866803 | Msa0324900:five_prime_UTR | 30.0% | |
| AATTCACATTTCCCACTTTG+CGG | - | chr2_4:30862141-30862160 | Msa0324900:three_prime_UTR | 35.0% | |
| TTCTCTCTCTTTCTTCAACA+TGG | - | chr2_4:30862267-30862286 | Msa0324900:three_prime_UTR | 35.0% | |
| !! | GCTTTTGGAGAATGTTTCAA+TGG | + | chr2_4:30862417-30862436 | None:intergenic | 35.0% |
| TTCTGCACAGTTTCTTCATA+AGG | - | chr2_4:30862541-30862560 | Msa0324900:intron | 35.0% | |
| AGCTCTTCTAGCAATTCTAA+TGG | + | chr2_4:30862573-30862592 | None:intergenic | 35.0% | |
| ! | GGTTTTTGTGACAAATCACA+AGG | + | chr2_4:30862614-30862633 | None:intergenic | 35.0% |
| !! | ACAAAAACCAGCTGTTTTGA+AGG | - | chr2_4:30862625-30862644 | Msa0324900:intron | 35.0% |
| AACCATATTTGCAATTGGCT+TGG | - | chr2_4:30863268-30863287 | Msa0324900:intron | 35.0% | |
| AACCAAGCCAATTGCAAATA+TGG | + | chr2_4:30863273-30863292 | None:intergenic | 35.0% | |
| !! | TCAAGTTTTGATGTTGGTGA+AGG | + | chr2_4:30863387-30863406 | None:intergenic | 35.0% |
| !! | TTTTGATTGGTTGGTTGTTC+CGG | + | chr2_4:30863494-30863513 | None:intergenic | 35.0% |
| TGACAGATACTGTAACTCAT+TGG | - | chr2_4:30863584-30863603 | Msa0324900:intron | 35.0% | |
| GACAGATACTGTAACTCATT+GGG | - | chr2_4:30863585-30863604 | Msa0324900:intron | 35.0% | |
| CAATATCGAGAATCATGATG+TGG | + | chr2_4:30863699-30863718 | None:intergenic | 35.0% | |
| CATCATGATTCTCGATATTG+TGG | - | chr2_4:30863699-30863718 | Msa0324900:intron | 35.0% | |
| TGGAAAATCACAGTCAAATG+CGG | - | chr2_4:30863719-30863738 | Msa0324900:intron | 35.0% | |
| TATGATGTGCCTAATTTCAC+AGG | - | chr2_4:30863795-30863814 | Msa0324900:CDS | 35.0% | |
| AAAACTGTGTATGATGCTCT+TGG | - | chr2_4:30863833-30863852 | Msa0324900:CDS | 35.0% | |
| CAGAAAAGGATCTAATATCG+CGG | + | chr2_4:30864006-30864025 | None:intergenic | 35.0% | |
| CATGTTCTTGATCTCAGAAA+AGG | + | chr2_4:30864020-30864039 | None:intergenic | 35.0% | |
| AAAAGTGAGACACAACAATG+TGG | - | chr2_4:30864078-30864097 | Msa0324900:CDS | 35.0% | |
| TCAGCAGTTGAAAAAAGATG+TGG | - | chr2_4:30864123-30864142 | Msa0324900:CDS | 35.0% | |
| GGAACTAACCTATAAGCATT+CGG | + | chr2_4:30864225-30864244 | None:intergenic | 35.0% | |
| TGTATATAACCTACGACATG+AGG | + | chr2_4:30864386-30864405 | None:intergenic | 35.0% | |
| TCTATATGCTCTCGTCAATA+TGG | - | chr2_4:30864458-30864477 | Msa0324900:CDS | 35.0% | |
| ACTCACGGAAAAGTAAAATC+AGG | + | chr2_4:30864515-30864534 | None:intergenic | 35.0% | |
| GCATCTTATGGTATTTGAGT+TGG | - | chr2_4:30864690-30864709 | Msa0324900:CDS | 35.0% | |
| ACTATTATTCTTATGGGAGG+TGG | + | chr2_4:30864769-30864788 | None:intergenic | 35.0% | |
| GCAACTATTATTCTTATGGG+AGG | + | chr2_4:30864772-30864791 | None:intergenic | 35.0% | |
| !! | AATAGTTGCTGATGGATTAG+AGG | - | chr2_4:30864783-30864802 | Msa0324900:CDS | 35.0% |
| AAAGAACCGATGCATCATAA+TGG | + | chr2_4:30864837-30864856 | None:intergenic | 35.0% | |
| ! | GTTAAAGCAGTTGGTCTAAT+TGG | - | chr2_4:30864882-30864901 | Msa0324900:CDS | 35.0% |
| TAGTACTGCTAGAAATCCAT+TGG | - | chr2_4:30864975-30864994 | Msa0324900:intron | 35.0% | |
| ATCCATTGTTATCAATCGTG+TGG | - | chr2_4:30865174-30865193 | Msa0324900:intron | 35.0% | |
| TAACAAGTGCCAATTGAAGT+TGG | - | chr2_4:30865390-30865409 | Msa0324900:intron | 35.0% | |
| GTTAATTGAATTTGTAGGGG+TGG | - | chr2_4:30865464-30865483 | Msa0324900:intron | 35.0% | |
| TAATTGAATTTGTAGGGGTG+GGG | - | chr2_4:30865466-30865485 | Msa0324900:intron | 35.0% | |
| GGTATAATTATTGAGGTGTG+AGG | - | chr2_4:30865497-30865516 | Msa0324900:intron | 35.0% | |
| GAACTGTCTGTAATACTGAT+GGG | - | chr2_4:30865534-30865553 | Msa0324900:intron | 35.0% | |
| AAAAAGTTAAAAACTGGGCC+TGG | - | chr2_4:30865584-30865603 | Msa0324900:intron | 35.0% | |
| AAAAGTTAAAAACTGGGCCT+GGG | - | chr2_4:30865585-30865604 | Msa0324900:intron | 35.0% | |
| CTATTCTCCTCTTAGCATAA+AGG | - | chr2_4:30865798-30865817 | Msa0324900:intron | 35.0% | |
| ! | AGATCCTTTTGAACTTCTAC+AGG | - | chr2_4:30865883-30865902 | Msa0324900:intron | 35.0% |
| TAGAACCTCACAAAGTCTTA+CGG | + | chr2_4:30865955-30865974 | None:intergenic | 35.0% | |
| TTATCTACATCTGTCACGTT+TGG | - | chr2_4:30866423-30866442 | Msa0324900:CDS | 35.0% | |
| TATCTACATCTGTCACGTTT+GGG | - | chr2_4:30866424-30866443 | Msa0324900:CDS | 35.0% | |
| AGAGCCATTACCTTGAAATT+AGG | - | chr2_4:30866456-30866475 | Msa0324900:CDS | 35.0% | |
| GCAACATTAAAGAAAGAACG+TGG | - | chr2_4:30866520-30866539 | Msa0324900:five_prime_UTR | 35.0% | |
| CATTAAAGAAAGAACGTGGT+AGG | - | chr2_4:30866524-30866543 | Msa0324900:five_prime_UTR | 35.0% | |
| GAAAAAGAAGTTACACTGAG+TGG | + | chr2_4:30866743-30866762 | None:intergenic | 35.0% | |
| ! | TGGGGTTGTTTCAAACAAAC+TGG | - | chr2_4:30862458-30862477 | Msa0324900:intron | 40.0% |
| !!! | CTGTTTTGAAGGTACCCTTT+TGG | - | chr2_4:30862636-30862655 | Msa0324900:intron | 40.0% |
| TATGAAACACAGACACTCCT+TGG | - | chr2_4:30862850-30862869 | Msa0324900:intron | 40.0% | |
| !! | TTTTTCGGAACAAAAACCGG+AGG | + | chr2_4:30863525-30863544 | None:intergenic | 40.0% |
| ! | ACGGCTTTATATAGCAGTCA+TGG | - | chr2_4:30863661-30863680 | Msa0324900:intron | 40.0% |
| AGCAGTCATGGTAATAGTTG+CGG | - | chr2_4:30863673-30863692 | Msa0324900:intron | 40.0% | |
| CTGAAATGTGCTCGTGATTT+AGG | + | chr2_4:30863753-30863772 | None:intergenic | 40.0% | |
| TGTGTATGATGCTCTTGGAT+TGG | - | chr2_4:30863838-30863857 | Msa0324900:CDS | 40.0% | |
| ! | TTTTAGCGACATAGGCAGAA+TGG | - | chr2_4:30863889-30863908 | Msa0324900:CDS | 40.0% |
| GTAGGTTAGAGATTGGTACT+TGG | - | chr2_4:30863973-30863992 | Msa0324900:intron | 40.0% | |
| CAACAATGTGGTACCTACAA+TGG | - | chr2_4:30864090-30864109 | Msa0324900:CDS | 40.0% | |
| TTTCAACTGCTGAACACCTA+AGG | + | chr2_4:30864116-30864135 | None:intergenic | 40.0% | |
| ATCGGAATCCGAATGCTTAT+AGG | - | chr2_4:30864214-30864233 | Msa0324900:intron | 40.0% | |
| ATATAACCTACGACATGAGG+AGG | + | chr2_4:30864383-30864402 | None:intergenic | 40.0% | |
| GCATTGTAGATTTCGGATGA+GGG | - | chr2_4:30864904-30864923 | Msa0324900:intron | 40.0% | |
| ATTATCGCCAACTCCAAGAT+CGG | + | chr2_4:30865010-30865029 | None:intergenic | 40.0% | |
| AGTTGGCGATAATGTGACAA+TGG | - | chr2_4:30865017-30865036 | Msa0324900:intron | 40.0% | |
| AATGTGACAATGGCTGGATA+TGG | - | chr2_4:30865027-30865046 | Msa0324900:intron | 40.0% | |
| ACAATGGCTGGATATGGATA+TGG | - | chr2_4:30865033-30865052 | Msa0324900:intron | 40.0% | |
| CGAGCATATAGACGACTAAT+CGG | + | chr2_4:30865063-30865082 | None:intergenic | 40.0% | |
| ! | CGATTAGTCGTCTATATGCT+CGG | - | chr2_4:30865061-30865080 | Msa0324900:intron | 40.0% |
| ! | CGTCTATATGCTCGGTATTT+TGG | - | chr2_4:30865069-30865088 | Msa0324900:intron | 40.0% |
| !! | CTATATGCTCGGTATTTTGG+TGG | - | chr2_4:30865072-30865091 | Msa0324900:intron | 40.0% |
| ! | AGCCACACGATTGATAACAA+TGG | + | chr2_4:30865179-30865198 | None:intergenic | 40.0% |
| CTGGACTCACAATATTAGTG+AGG | - | chr2_4:30865212-30865231 | Msa0324900:intron | 40.0% | |
| AGGACTCATAGAGATGTTAG+TGG | + | chr2_4:30865362-30865381 | None:intergenic | 40.0% | |
| ! | TGGCACTTGTTACTTATGCT+AGG | + | chr2_4:30865382-30865401 | None:intergenic | 40.0% |
| TATCGCTCACCAACTTCAAT+TGG | + | chr2_4:30865402-30865421 | None:intergenic | 40.0% | |
| !! | AATTGAAGTTGGTGAGCGAT+AGG | - | chr2_4:30865401-30865420 | Msa0324900:intron | 40.0% |
| AATTGAATTTGTAGGGGTGG+GGG | - | chr2_4:30865467-30865486 | Msa0324900:intron | 40.0% | |
| TTGAGGTGTGAGGTAAAATC+AGG | - | chr2_4:30865507-30865526 | Msa0324900:intron | 40.0% | |
| GTGTGAGGTAAAATCAGGAA+AGG | - | chr2_4:30865512-30865531 | Msa0324900:intron | 40.0% | |
| GGAACTGTCTGTAATACTGA+TGG | - | chr2_4:30865533-30865552 | Msa0324900:intron | 40.0% | |
| TCTCACTCCTTTATGCTAAG+AGG | + | chr2_4:30865808-30865827 | None:intergenic | 40.0% | |
| TCTTTCCGTAAGACTTTGTG+AGG | - | chr2_4:30865947-30865966 | Msa0324900:intron | 40.0% | |
| ! | TGTGAGGTTCTATTTTGCTG+AGG | - | chr2_4:30865963-30865982 | Msa0324900:intron | 40.0% |
| ! | ACTTTTCAGTCACACTCAAG+AGG | - | chr2_4:30866489-30866508 | Msa0324900:five_prime_UTR | 40.0% |
| TTTCAGGACCACATAGAGAT+GGG | + | chr2_4:30866701-30866720 | None:intergenic | 40.0% | |
| !! | TTTTCAGGACCACATAGAGA+TGG | + | chr2_4:30866702-30866721 | None:intergenic | 40.0% |
| AGTTACACTGAGTGGTTCAT+TGG | + | chr2_4:30866735-30866754 | None:intergenic | 40.0% | |
| !!! | CTTTGGTTTTGCCGCAAAGT+GGG | + | chr2_4:30862155-30862174 | None:intergenic | 45.0% |
| !!! | ACTTTGGTTTTGCCGCAAAG+TGG | + | chr2_4:30862156-30862175 | None:intergenic | 45.0% |
| AATGGCTTTCTTTGCAGCCA+TGG | + | chr2_4:30862399-30862418 | None:intergenic | 45.0% | |
| GAAGAGCTGTTGAGCTTGAA+AGG | - | chr2_4:30862585-30862604 | Msa0324900:intron | 45.0% | |
| !! | AAGGGTACCTTCAAAACAGC+TGG | + | chr2_4:30862635-30862654 | None:intergenic | 45.0% |
| ACACAGACACTCCTTGGATT+AGG | - | chr2_4:30862856-30862875 | Msa0324900:intron | 45.0% | |
| TATATGTGTCAGCGTCGTGT+CGG | + | chr2_4:30862908-30862927 | None:intergenic | 45.0% | |
| GGAACTCGTGATCTTAAAGC+AGG | + | chr2_4:30863619-30863638 | None:intergenic | 45.0% | |
| CACGAGTTCCTGAAAATGAG+AGG | - | chr2_4:30863629-30863648 | Msa0324900:intron | 45.0% | |
| TGAACACCTAAGGCCATTGT+AGG | + | chr2_4:30864106-30864125 | None:intergenic | 45.0% | |
| ACATACAAGAATGTCTCCGG+TGG | - | chr2_4:30864403-30864422 | Msa0324900:CDS | 45.0% | |
| TATAGAGCGTGCATCGTCAA+CGG | + | chr2_4:30864444-30864463 | None:intergenic | 45.0% | |
| GCCCCTGACGTACATATATA+CGG | - | chr2_4:30864485-30864504 | Msa0324900:CDS | 45.0% | |
| GCCGTATATATGTACGTCAG+GGG | + | chr2_4:30864489-30864508 | None:intergenic | 45.0% | |
| CGCCGTATATATGTACGTCA+GGG | + | chr2_4:30864490-30864509 | None:intergenic | 45.0% | |
| TCGCCGTATATATGTACGTC+AGG | + | chr2_4:30864491-30864510 | None:intergenic | 45.0% | |
| TCCAGCTCACTTGCATCTTA+TGG | - | chr2_4:30864678-30864697 | Msa0324900:CDS | 45.0% | |
| ACCATAAGATGCAAGTGAGC+TGG | + | chr2_4:30864682-30864701 | None:intergenic | 45.0% | |
| TATGGGAGGTGGATCTTTGT+CGG | + | chr2_4:30864758-30864777 | None:intergenic | 45.0% | |
| GGCATTGTAGATTTCGGATG+AGG | - | chr2_4:30864903-30864922 | Msa0324900:intron | 45.0% | |
| TTGTAGATTTCGGATGAGGG+AGG | - | chr2_4:30864907-30864926 | Msa0324900:intron | 45.0% | |
| ATCTTTCGCAGACCACTTCT+TGG | + | chr2_4:30864940-30864959 | None:intergenic | 45.0% | |
| ! | TTATCAATCGTGTGGCTTGC+AGG | - | chr2_4:30865182-30865201 | Msa0324900:intron | 45.0% |
| ! | TATCAATCGTGTGGCTTGCA+GGG | - | chr2_4:30865183-30865202 | Msa0324900:intron | 45.0% |
| TTGGTGAGCGATAGGTGAAT+GGG | - | chr2_4:30865409-30865428 | Msa0324900:intron | 45.0% | |
| ! | CGTGGGGGGTATAATTATTG+AGG | - | chr2_4:30865490-30865509 | Msa0324900:intron | 45.0% |
| !! | GTAATACTGATGGGCTTGAC+TGG | - | chr2_4:30865543-30865562 | Msa0324900:intron | 45.0% |
| GAATTCTAACAAGCCACCAG+GGG | + | chr2_4:30865651-30865670 | None:intergenic | 45.0% | |
| GGAATTCTAACAAGCCACCA+GGG | + | chr2_4:30865652-30865671 | None:intergenic | 45.0% | |
| ACAATAGCACGGTTGTGTAG+CGG | + | chr2_4:30865673-30865692 | None:intergenic | 45.0% | |
| GCTATAGCAGCACAATAGCA+CGG | + | chr2_4:30865684-30865703 | None:intergenic | 45.0% | |
| TATGGAGACCCATCTCTATG+TGG | - | chr2_4:30866690-30866709 | Msa0324900:five_prime_UTR | 45.0% | |
| CACTGAGTGGTTCATTGGAT+TGG | + | chr2_4:30866730-30866749 | None:intergenic | 45.0% | |
| !!! | TTTTAATATTAATAAAAAAG+TGG | - | chr2_4:30863153-30863172 | Msa0324900:intron | 5.0% |
| GGTGTCAAATACGACACGTG+GGG | + | chr2_4:30862887-30862906 | None:intergenic | 50.0% | |
| ! | CGGTGTCAAATACGACACGT+GGG | + | chr2_4:30862888-30862907 | None:intergenic | 50.0% |
| !! | TCGGTGTCAAATACGACACG+TGG | + | chr2_4:30862889-30862908 | None:intergenic | 50.0% |
| GTGCCTAATTTCACAGGCGT+AGG | - | chr2_4:30863801-30863820 | Msa0324900:CDS | 50.0% | |
| AGGCCTACGCCTGTGAAATT+AGG | + | chr2_4:30863807-30863826 | None:intergenic | 50.0% | |
| !! | TGATGCTCTTGGATTGGCGT+AGG | - | chr2_4:30863844-30863863 | Msa0324900:CDS | 50.0% |
| GTGGTACCTACAATGGCCTT+AGG | - | chr2_4:30864097-30864116 | Msa0324900:CDS | 50.0% | |
| ACGACATGAGGAGGAGGATT+TGG | + | chr2_4:30864374-30864393 | None:intergenic | 50.0% | |
| AATCCTCCTCCTCATGTCGT+AGG | - | chr2_4:30864374-30864393 | Msa0324900:CDS | 50.0% | |
| TAACCTACGACATGAGGAGG+AGG | + | chr2_4:30864380-30864399 | None:intergenic | 50.0% | |
| TACAAGAATGTCTCCGGTGG+AGG | - | chr2_4:30864406-30864425 | Msa0324900:CDS | 50.0% | |
| TAGATTTCGGATGAGGGAGG+TGG | - | chr2_4:30864910-30864929 | Msa0324900:intron | 50.0% | |
| GGAGGTGGAATACCAAGAAG+TGG | - | chr2_4:30864925-30864944 | Msa0324900:intron | 50.0% | |
| AGATCGGCATGCTCATCCAA+TGG | + | chr2_4:30864994-30865013 | None:intergenic | 50.0% | |
| TTGGATGAGCATGCCGATCT+TGG | - | chr2_4:30864994-30865013 | Msa0324900:intron | 50.0% | |
| GGCGATAATGTGACAATGGC+TGG | - | chr2_4:30865021-30865040 | Msa0324900:intron | 50.0% | |
| ! | ATCAATCGTGTGGCTTGCAG+GGG | - | chr2_4:30865184-30865203 | Msa0324900:intron | 50.0% |
| ! | GTTGGTGAGCGATAGGTGAA+TGG | - | chr2_4:30865408-30865427 | Msa0324900:intron | 50.0% |
| CGGAATTCTAACAAGCCACC+AGG | + | chr2_4:30865653-30865672 | None:intergenic | 50.0% | |
| GTGGGGACATGCCTAATCCA+AGG | + | chr2_4:30862870-30862889 | None:intergenic | 55.0% | |
| GCATTCCTTGCTACCTCCAC+CGG | + | chr2_4:30864422-30864441 | None:intergenic | 55.0% | |
| GAGCATGCCGATCTTGGAGT+TGG | - | chr2_4:30865000-30865019 | Msa0324900:intron | 55.0% | |
| ! | ATGGGCTTGACTGGCTGTAG+TGG | - | chr2_4:30865552-30865571 | Msa0324900:intron | 55.0% |
| GTTAAAAACTGGGCCTGGGC+TGG | - | chr2_4:30865589-30865608 | Msa0324900:intron | 55.0% | |
| TGCCACTCCCTGCCTTAAAC+AGG | - | chr2_4:30865621-30865640 | Msa0324900:intron | 55.0% | |
| ! | GACCTGTTTAAGGCAGGGAG+TGG | + | chr2_4:30865626-30865645 | None:intergenic | 55.0% |
| TTCTAACAAGCCACCAGGGG+CGG | + | chr2_4:30865648-30865667 | None:intergenic | 55.0% | |
| TGTCTCCGGTGGAGGTAGCA+AGG | - | chr2_4:30864414-30864433 | Msa0324900:CDS | 60.0% | |
| ! | AATCGTGTGGCTTGCAGGGG+CGG | - | chr2_4:30865187-30865206 | Msa0324900:intron | 60.0% |
| AATTTGTAGGGGTGGGGGCG+TGG | - | chr2_4:30865472-30865491 | Msa0324900:intron | 60.0% | |
| ! | ATTTGTAGGGGTGGGGGCGT+GGG | - | chr2_4:30865473-30865492 | Msa0324900:intron | 60.0% |
| ! | GGGCGGACCTGTTTAAGGCA+GGG | + | chr2_4:30865631-30865650 | None:intergenic | 60.0% |
| ACCAGGGGCGGACCTGTTTA+AGG | + | chr2_4:30865636-30865655 | None:intergenic | 60.0% | |
| TTAAACAGGTCCGCCCCTGG+TGG | - | chr2_4:30865635-30865654 | Msa0324900:intron | 60.0% | |
| ! | TTTGTAGGGGTGGGGGCGTG+GGG | - | chr2_4:30865474-30865493 | Msa0324900:intron | 65.0% |
| !! | AAACTGGGCCTGGGCTGGTG+TGG | - | chr2_4:30865594-30865613 | Msa0324900:intron | 65.0% |
| GGCAATAGCCACACCAGCCC+AGG | + | chr2_4:30865605-30865624 | None:intergenic | 65.0% | |
| ! | GGGGCGGACCTGTTTAAGGC+AGG | + | chr2_4:30865632-30865651 | None:intergenic | 65.0% |
| GCCTTAAACAGGTCCGCCCC+TGG | - | chr2_4:30865632-30865651 | Msa0324900:intron | 65.0% | |
| ! | GTGGCTTGCAGGGGCGGATC+TGG | - | chr2_4:30865193-30865212 | Msa0324900:intron | 70.0% |
| ! | TTGTAGGGGTGGGGGCGTGG+GGG | - | chr2_4:30865475-30865494 | Msa0324900:intron | 70.0% |
| ! | TGTAGGGGTGGGGGCGTGGG+GGG | - | chr2_4:30865476-30865495 | Msa0324900:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 30862069 | 30866812 | 30862069 | ID=Msa0324900;Name=Msa0324900 |
| chr2_4 | mRNA | 30862069 | 30866812 | 30862069 | ID=Msa0324900-mRNA-1;Parent=Msa0324900;Name=Msa0324900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=329|1|1|1|1|1|6|341|369 |
| chr2_4 | exon | 30862069 | 30862468 | 30862069 | ID=Msa0324900-mRNA-1:exon:10339;Parent=Msa0324900-mRNA-1 |
| chr2_4 | exon | 30863755 | 30863968 | 30863755 | ID=Msa0324900-mRNA-1:exon:10338;Parent=Msa0324900-mRNA-1 |
| chr2_4 | exon | 30864062 | 30864209 | 30864062 | ID=Msa0324900-mRNA-1:exon:10337;Parent=Msa0324900-mRNA-1 |
| chr2_4 | exon | 30864353 | 30864533 | 30864353 | ID=Msa0324900-mRNA-1:exon:10336;Parent=Msa0324900-mRNA-1 |
| chr2_4 | exon | 30864646 | 30864904 | 30864646 | ID=Msa0324900-mRNA-1:exon:10335;Parent=Msa0324900-mRNA-1 |
| chr2_4 | exon | 30866235 | 30866812 | 30866235 | ID=Msa0324900-mRNA-1:exon:10334;Parent=Msa0324900-mRNA-1 |
| chr2_4 | five_prime_UTR | 30866484 | 30866812 | 30866484 | ID=Msa0324900-mRNA-1:five_prime_utr;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30866235 | 30866483 | 30866235 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30864646 | 30864904 | 30864646 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30864353 | 30864533 | 30864353 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30864062 | 30864209 | 30864062 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30863755 | 30863968 | 30863755 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | CDS | 30862410 | 30862468 | 30862410 | ID=Msa0324900-mRNA-1:cds;Parent=Msa0324900-mRNA-1 |
| chr2_4 | three_prime_UTR | 30862069 | 30862409 | 30862069 | ID=Msa0324900-mRNA-1:three_prime_utr;Parent=Msa0324900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
